Query psy6613
Match_columns 510
No_of_seqs 259 out of 1612
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 22:36:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3812|consensus 100.0 6.5E-77 1.4E-81 598.2 18.9 252 4-507 13-266 (475)
2 KOG0609|consensus 100.0 3.8E-55 8.3E-60 462.8 18.8 295 4-307 157-539 (542)
3 COG0194 Gmk Guanylate kinase [ 100.0 1.9E-31 4.1E-36 253.9 16.0 143 146-293 3-182 (191)
4 smart00072 GuKc Guanylate kina 100.0 6.8E-29 1.5E-33 233.9 16.3 145 147-294 2-183 (184)
5 PF00625 Guanylate_kin: Guanyl 100.0 4.5E-28 9.8E-33 227.6 14.9 144 147-294 2-183 (183)
6 PRK14737 gmk guanylate kinase; 99.9 3.4E-27 7.3E-32 224.7 16.0 141 147-292 4-183 (186)
7 PLN02772 guanylate kinase 99.9 1.2E-26 2.6E-31 243.0 16.3 144 146-291 134-316 (398)
8 KOG0708|consensus 99.9 9.2E-27 2E-31 239.6 12.9 248 46-306 65-358 (359)
9 KOG0707|consensus 99.9 1.9E-22 4.1E-27 197.5 13.2 149 144-294 34-222 (231)
10 KOG3812|consensus 99.9 4.5E-22 9.8E-27 202.0 15.5 161 145-306 206-366 (475)
11 PRK14738 gmk guanylate kinase; 99.9 9E-21 2E-25 182.5 17.4 147 144-294 10-195 (206)
12 KOG3580|consensus 99.8 4.5E-20 9.7E-25 197.4 17.5 274 15-306 450-788 (1027)
13 TIGR03263 guanyl_kin guanylate 99.8 8.7E-20 1.9E-24 169.3 15.6 137 151-292 7-179 (180)
14 PRK00300 gmk guanylate kinase; 99.8 1.8E-18 4E-23 163.9 16.1 143 147-294 5-185 (205)
15 PF12052 VGCC_beta4Aa_N: Volta 99.7 4.6E-18 9.9E-23 123.7 2.6 41 331-371 1-42 (42)
16 cd00071 GMPK Guanosine monopho 99.7 2.1E-16 4.6E-21 143.4 10.5 98 150-287 4-136 (137)
17 PF12052 VGCC_beta4Aa_N: Volta 99.4 6.7E-14 1.4E-18 102.2 3.0 41 4-44 1-42 (42)
18 PRK10078 ribose 1,5-bisphospho 99.3 2.2E-11 4.8E-16 115.1 14.6 133 151-291 8-174 (186)
19 TIGR02322 phosphon_PhnN phosph 99.3 1.1E-10 2.3E-15 108.8 15.1 134 151-291 7-176 (179)
20 PF00018 SH3_1: SH3 domain; I 99.1 1.1E-10 2.3E-15 88.1 4.9 48 51-106 1-48 (48)
21 PRK04040 adenylate kinase; Pro 99.0 2.7E-09 5.9E-14 102.2 12.6 139 151-291 8-187 (188)
22 PRK08356 hypothetical protein; 99.0 1.5E-08 3.3E-13 96.6 14.7 136 151-294 11-193 (195)
23 PF07653 SH3_2: Variant SH3 do 98.9 7.1E-10 1.5E-14 85.9 3.7 52 49-110 1-53 (55)
24 PF14604 SH3_9: Variant SH3 do 98.9 2E-09 4.4E-14 82.1 5.1 47 52-108 1-47 (49)
25 KOG2199|consensus 98.8 8.6E-10 1.9E-14 115.2 1.5 59 45-113 213-271 (462)
26 KOG4792|consensus 98.8 3.2E-09 7E-14 104.3 3.0 61 47-116 124-184 (293)
27 cd00227 CPT Chloramphenicol (C 98.7 2.1E-07 4.5E-12 87.1 12.9 136 147-290 2-173 (175)
28 smart00326 SH3 Src homology 3 98.7 5.5E-08 1.2E-12 72.9 6.3 53 48-109 3-55 (58)
29 cd00174 SH3 Src homology 3 dom 98.6 5.2E-08 1.1E-12 72.4 5.4 51 50-109 2-52 (54)
30 COG3709 Uncharacterized compon 98.6 1.2E-06 2.7E-11 83.2 13.6 140 146-291 4-180 (192)
31 KOG1029|consensus 98.4 8.8E-08 1.9E-12 106.5 2.6 54 48-111 1054-1107(1118)
32 KOG1118|consensus 98.4 8.6E-08 1.9E-12 97.8 2.0 52 47-108 306-357 (366)
33 KOG2070|consensus 98.4 3.1E-07 6.8E-12 98.4 5.5 61 43-113 13-73 (661)
34 PRK00698 tmk thymidylate kinas 98.1 3.1E-05 6.7E-10 73.0 12.3 144 147-295 3-204 (205)
35 KOG4226|consensus 98.1 1.2E-06 2.6E-11 88.4 2.7 64 39-111 183-248 (379)
36 PRK14731 coaE dephospho-CoA ki 97.9 0.00016 3.4E-09 70.2 11.6 68 227-296 136-205 (208)
37 PRK12339 2-phosphoglycerate ki 97.8 0.00024 5.2E-09 69.0 11.5 92 195-290 90-194 (197)
38 PRK00081 coaE dephospho-CoA ki 97.8 0.00035 7.7E-09 67.0 12.1 83 203-292 107-192 (194)
39 TIGR01360 aden_kin_iso1 adenyl 97.7 0.00038 8.3E-09 64.6 12.0 136 151-292 9-186 (188)
40 KOG3601|consensus 97.7 1.2E-05 2.7E-10 78.7 1.9 54 45-108 161-214 (222)
41 KOG0162|consensus 97.7 1.9E-05 4.1E-10 88.2 3.5 51 48-108 1052-1102(1106)
42 PRK14732 coaE dephospho-CoA ki 97.7 0.00057 1.2E-08 66.1 12.2 90 200-295 101-192 (196)
43 KOG2856|consensus 97.6 2.2E-05 4.7E-10 82.1 1.8 54 48-110 415-469 (472)
44 PRK00131 aroK shikimate kinase 97.6 0.00068 1.5E-08 61.8 11.4 139 151-296 10-174 (175)
45 PRK04182 cytidylate kinase; Pr 97.6 0.0024 5.2E-08 58.7 14.7 139 151-295 6-175 (180)
46 KOG4348|consensus 97.6 4.8E-05 1E-09 81.0 3.8 50 48-107 262-313 (627)
47 PRK06762 hypothetical protein; 97.6 0.00075 1.6E-08 62.1 11.3 132 151-288 8-159 (166)
48 PRK01184 hypothetical protein; 97.6 0.0012 2.7E-08 61.8 12.6 93 202-296 80-181 (184)
49 KOG3875|consensus 97.6 1.6E-05 3.5E-10 81.6 -0.3 72 30-109 250-327 (362)
50 KOG4225|consensus 97.5 5.7E-05 1.2E-09 80.5 3.5 54 48-111 231-284 (489)
51 PRK00091 miaA tRNA delta(2)-is 97.5 0.00036 7.8E-09 72.3 8.5 90 151-247 10-132 (307)
52 PRK13975 thymidylate kinase; P 97.5 0.0044 9.6E-08 58.3 14.8 140 151-292 8-189 (196)
53 PRK03839 putative kinase; Prov 97.4 0.0032 7E-08 58.9 13.7 135 149-292 3-152 (180)
54 PRK14532 adenylate kinase; Pro 97.4 0.0018 3.8E-08 61.0 11.5 141 149-292 3-186 (188)
55 TIGR01313 therm_gnt_kin carboh 97.4 0.005 1.1E-07 56.5 13.8 138 150-291 3-161 (163)
56 PRK14530 adenylate kinase; Pro 97.3 0.0026 5.7E-08 61.5 12.1 140 148-292 5-212 (215)
57 cd01672 TMPK Thymidine monopho 97.3 0.0061 1.3E-07 56.5 14.1 138 151-291 6-198 (200)
58 PRK14531 adenylate kinase; Pro 97.3 0.0054 1.2E-07 58.0 13.8 142 147-291 3-182 (183)
59 KOG2996|consensus 97.3 0.00014 3.1E-09 79.8 3.5 54 48-111 806-861 (865)
60 TIGR02173 cyt_kin_arch cytidyl 97.3 0.008 1.7E-07 54.9 14.1 129 151-288 6-167 (171)
61 KOG4348|consensus 97.3 8.3E-05 1.8E-09 79.3 0.8 58 44-111 97-154 (627)
62 KOG0515|consensus 97.3 0.00014 3.1E-09 79.1 2.6 51 50-110 686-739 (752)
63 TIGR01351 adk adenylate kinase 97.2 0.0042 9.2E-08 59.9 12.4 141 148-291 1-209 (210)
64 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0085 1.9E-07 55.8 14.0 137 151-290 5-181 (183)
65 PHA02530 pseT polynucleotide k 97.2 0.0054 1.2E-07 61.7 13.1 94 151-247 8-125 (300)
66 PTZ00451 dephospho-CoA kinase; 97.2 0.003 6.5E-08 63.6 10.8 85 203-293 118-207 (244)
67 PRK08233 hypothetical protein; 97.2 0.0053 1.1E-07 56.7 11.6 140 151-292 9-176 (182)
68 PRK00279 adk adenylate kinase; 97.1 0.0077 1.7E-07 58.3 13.0 142 148-292 2-213 (215)
69 KOG3655|consensus 97.1 0.00016 3.4E-09 77.9 1.4 53 47-108 427-479 (484)
70 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0032 6.9E-08 62.3 10.5 140 151-291 5-167 (249)
71 PRK13808 adenylate kinase; Pro 97.1 0.0094 2E-07 62.7 14.4 153 148-303 2-203 (333)
72 PRK05480 uridine/cytidine kina 97.1 0.012 2.6E-07 56.4 14.1 72 223-295 125-206 (209)
73 COG1936 Predicted nucleotide k 97.1 0.005 1.1E-07 59.4 11.0 131 151-293 6-156 (180)
74 PF13671 AAA_33: AAA domain; P 97.1 0.0015 3.2E-08 58.0 7.0 93 151-248 5-121 (143)
75 TIGR00152 dephospho-CoA kinase 97.1 0.0043 9.3E-08 58.7 10.4 82 200-288 103-187 (188)
76 KOG4226|consensus 97.0 0.00038 8.2E-09 70.8 2.9 51 53-113 113-163 (379)
77 KOG4225|consensus 97.0 0.00051 1.1E-08 73.5 3.8 58 43-108 428-485 (489)
78 PRK14734 coaE dephospho-CoA ki 97.0 0.01 2.2E-07 57.5 12.5 85 203-294 108-195 (200)
79 TIGR00235 udk uridine kinase. 97.0 0.014 2.9E-07 56.3 12.8 69 223-292 125-203 (207)
80 PLN02422 dephospho-CoA kinase 97.0 0.012 2.5E-07 59.0 12.6 91 203-304 108-202 (232)
81 KOG1264|consensus 96.9 0.00049 1.1E-08 78.0 2.7 56 47-111 774-829 (1267)
82 PRK05541 adenylylsulfate kinas 96.9 0.0019 4.1E-08 60.2 6.2 134 151-291 13-170 (176)
83 KOG2546|consensus 96.9 0.00049 1.1E-08 73.4 2.4 49 50-108 426-474 (483)
84 PLN02200 adenylate kinase fami 96.9 0.015 3.3E-07 57.8 12.9 142 151-295 49-226 (234)
85 PRK13946 shikimate kinase; Pro 96.9 0.018 3.9E-07 54.6 12.8 136 151-295 16-178 (184)
86 PRK14730 coaE dephospho-CoA ki 96.8 0.014 3.1E-07 56.2 11.8 85 202-291 107-192 (195)
87 PRK08154 anaerobic benzoate ca 96.8 0.018 3.8E-07 59.5 12.8 140 151-297 139-305 (309)
88 PRK14527 adenylate kinase; Pro 96.8 0.019 4.1E-07 54.5 12.0 139 151-291 12-190 (191)
89 PRK13947 shikimate kinase; Pro 96.8 0.016 3.5E-07 53.3 11.1 134 149-289 4-163 (171)
90 cd01428 ADK Adenylate kinase ( 96.7 0.015 3.3E-07 54.3 10.8 96 148-246 1-126 (194)
91 PRK05057 aroK shikimate kinase 96.7 0.022 4.7E-07 53.8 11.8 135 148-291 6-169 (172)
92 KOG3632|consensus 96.5 0.0021 4.6E-08 74.2 4.2 67 43-113 1135-1203(1335)
93 KOG4575|consensus 96.5 0.0027 5.8E-08 70.6 4.8 57 44-108 5-61 (874)
94 KOG1029|consensus 96.5 0.0012 2.6E-08 74.6 2.1 53 48-111 814-866 (1118)
95 cd02023 UMPK Uridine monophosp 96.5 0.019 4.2E-07 54.5 9.7 61 224-285 119-189 (198)
96 PRK13974 thymidylate kinase; P 96.4 0.034 7.3E-07 54.1 11.5 100 195-294 88-207 (212)
97 KOG0197|consensus 96.4 0.00083 1.8E-08 73.1 0.2 57 49-113 13-70 (468)
98 PRK14526 adenylate kinase; Pro 96.3 0.06 1.3E-06 52.9 12.7 141 149-292 3-208 (211)
99 PRK02496 adk adenylate kinase; 96.3 0.054 1.2E-06 50.8 11.9 141 148-291 3-182 (184)
100 KOG1843|consensus 96.3 0.002 4.2E-08 68.7 2.2 50 49-108 418-469 (473)
101 COG0563 Adk Adenylate kinase a 96.3 0.041 8.9E-07 52.8 11.0 134 148-289 2-175 (178)
102 cd00464 SK Shikimate kinase (S 96.3 0.041 8.9E-07 49.4 10.5 125 150-280 4-150 (154)
103 cd02022 DPCK Dephospho-coenzym 96.3 0.029 6.2E-07 53.0 9.9 70 203-279 104-175 (179)
104 PRK14733 coaE dephospho-CoA ki 96.3 0.099 2.1E-06 51.4 13.8 85 202-295 108-200 (204)
105 PRK13973 thymidylate kinase; P 96.3 0.071 1.5E-06 51.9 12.7 103 194-296 81-209 (213)
106 PRK13976 thymidylate kinase; P 96.2 0.044 9.6E-07 53.7 10.8 144 151-295 6-203 (209)
107 PRK13949 shikimate kinase; Pro 96.2 0.051 1.1E-06 51.3 10.8 20 148-167 3-23 (169)
108 PLN02842 nucleotide kinase 96.2 0.11 2.4E-06 57.6 14.7 147 149-298 1-207 (505)
109 PRK13948 shikimate kinase; Pro 96.1 0.074 1.6E-06 51.2 11.8 132 151-293 16-175 (182)
110 TIGR00041 DTMP_kinase thymidyl 96.0 0.064 1.4E-06 50.5 10.7 21 147-167 3-25 (195)
111 PLN02459 probable adenylate ki 96.0 0.099 2.1E-06 53.4 12.4 141 148-291 31-249 (261)
112 PRK12338 hypothetical protein; 96.0 0.1 2.3E-06 54.6 12.9 95 196-294 99-205 (319)
113 cd02020 CMPK Cytidine monophos 95.9 0.12 2.7E-06 45.7 11.6 121 151-277 5-146 (147)
114 PF07931 CPT: Chloramphenicol 95.9 0.061 1.3E-06 51.6 10.2 138 147-291 1-173 (174)
115 PRK06696 uridine kinase; Valid 95.9 0.023 4.9E-07 55.5 7.3 17 151-167 28-44 (223)
116 PF13238 AAA_18: AAA domain; P 95.9 0.011 2.5E-07 50.8 4.5 98 150-251 3-118 (129)
117 PLN02674 adenylate kinase 95.7 0.15 3.3E-06 51.4 12.6 142 147-291 32-243 (244)
118 PRK05416 glmZ(sRNA)-inactivati 95.7 0.15 3.2E-06 52.7 12.4 125 151-288 12-155 (288)
119 PRK00889 adenylylsulfate kinas 95.5 0.074 1.6E-06 49.5 8.9 137 151-292 10-169 (175)
120 PRK08118 topology modulation p 95.5 0.062 1.3E-06 50.6 8.2 83 148-238 3-93 (167)
121 PRK12337 2-phosphoglycerate ki 95.5 0.28 6.2E-06 54.0 14.2 97 195-294 352-462 (475)
122 PRK07261 topology modulation p 95.4 0.035 7.5E-07 52.3 6.4 90 148-243 2-98 (171)
123 PRK09825 idnK D-gluconate kina 95.4 0.23 4.9E-06 47.2 11.9 17 151-167 9-25 (176)
124 cd01673 dNK Deoxyribonucleosid 95.3 0.34 7.3E-06 45.7 12.7 97 151-247 5-147 (193)
125 PRK00625 shikimate kinase; Pro 95.3 0.03 6.5E-07 53.3 5.5 92 151-248 6-119 (173)
126 PRK04220 2-phosphoglycerate ki 95.3 0.19 4.1E-06 52.4 11.5 98 193-293 181-290 (301)
127 cd02021 GntK Gluconate kinase 95.2 0.19 4.1E-06 45.3 10.2 93 151-247 5-120 (150)
128 TIGR00174 miaA tRNA isopenteny 95.1 0.035 7.5E-07 57.3 5.8 62 150-211 4-97 (287)
129 KOG4278|consensus 95.1 0.032 7E-07 62.9 5.7 84 11-109 57-143 (1157)
130 PTZ00088 adenylate kinase 1; P 95.1 0.38 8.3E-06 47.9 12.9 20 148-167 8-28 (229)
131 PRK06217 hypothetical protein; 95.0 0.11 2.5E-06 49.0 8.6 89 148-245 3-104 (183)
132 PF02223 Thymidylate_kin: Thym 95.0 0.055 1.2E-06 50.8 6.3 91 193-286 71-185 (186)
133 KOG3771|consensus 95.0 0.012 2.5E-07 63.9 1.9 53 46-105 399-454 (460)
134 TIGR00455 apsK adenylylsulfate 95.0 0.084 1.8E-06 49.6 7.4 137 151-290 24-183 (184)
135 PRK14529 adenylate kinase; Pro 94.9 0.53 1.1E-05 46.9 13.2 95 148-245 2-126 (223)
136 PLN02924 thymidylate kinase 94.9 0.41 8.9E-06 47.3 12.3 145 145-296 14-206 (220)
137 PRK03846 adenylylsulfate kinas 94.7 0.2 4.3E-06 48.0 9.4 141 146-292 23-191 (198)
138 COG0703 AroK Shikimate kinase 94.7 0.21 4.5E-06 48.2 9.3 139 148-293 4-168 (172)
139 KOG1702|consensus 94.6 0.031 6.6E-07 55.2 3.4 53 48-108 208-260 (264)
140 PRK05537 bifunctional sulfate 94.6 0.14 3E-06 57.6 9.0 137 151-292 398-561 (568)
141 PF00406 ADK: Adenylate kinase 94.5 0.088 1.9E-06 47.9 6.2 102 150-257 1-132 (151)
142 PRK14528 adenylate kinase; Pro 94.5 0.55 1.2E-05 44.8 11.8 138 148-288 3-183 (186)
143 PRK11545 gntK gluconate kinase 94.4 0.76 1.6E-05 43.0 12.3 17 151-167 1-17 (163)
144 COG2019 AdkA Archaeal adenylat 94.4 0.86 1.9E-05 44.3 12.6 140 151-292 10-187 (189)
145 PRK09270 nucleoside triphospha 94.2 0.8 1.7E-05 44.9 12.4 55 224-280 161-223 (229)
146 COG1102 Cmk Cytidylate kinase 94.0 0.75 1.6E-05 44.4 11.4 137 151-297 6-172 (179)
147 COG4639 Predicted kinase [Gene 94.0 0.41 9E-06 45.8 9.6 124 151-281 8-152 (168)
148 COG1428 Deoxynucleoside kinase 93.9 1.1 2.5E-05 44.6 12.7 96 151-249 10-151 (216)
149 TIGR01663 PNK-3'Pase polynucle 93.8 0.58 1.3E-05 52.3 11.8 89 151-247 375-470 (526)
150 PHA00729 NTP-binding motif con 93.8 0.13 2.7E-06 51.6 6.0 24 225-248 119-142 (226)
151 PF06414 Zeta_toxin: Zeta toxi 93.7 0.47 1E-05 45.4 9.7 92 151-243 21-139 (199)
152 KOG3347|consensus 93.5 1.7 3.6E-05 41.8 12.6 94 149-249 10-117 (176)
153 COG0645 Predicted kinase [Gene 93.4 1.1 2.5E-05 43.1 11.4 136 151-288 7-166 (170)
154 KOG3557|consensus 93.3 0.028 6.2E-07 62.9 0.6 54 48-111 501-554 (721)
155 PRK03333 coaE dephospho-CoA ki 93.3 0.64 1.4E-05 49.9 10.7 69 223-295 123-194 (395)
156 KOG3354|consensus 93.2 1.2 2.5E-05 43.1 11.2 141 144-291 10-186 (191)
157 cd02030 NDUO42 NADH:Ubiquinone 93.2 2.6 5.7E-05 41.1 14.2 17 151-167 5-21 (219)
158 PF01121 CoaE: Dephospho-CoA k 93.2 0.25 5.5E-06 47.4 6.9 71 202-279 104-176 (180)
159 COG0125 Tmk Thymidylate kinase 93.2 0.98 2.1E-05 44.6 11.1 144 147-295 3-205 (208)
160 PRK07933 thymidylate kinase; V 93.1 1.3 2.8E-05 43.4 11.8 17 151-167 6-22 (213)
161 PRK03731 aroL shikimate kinase 93.0 0.54 1.2E-05 43.4 8.6 20 148-167 4-24 (171)
162 PRK14021 bifunctional shikimat 92.7 1.4 3E-05 49.3 12.7 138 148-292 8-175 (542)
163 PF13207 AAA_17: AAA domain; P 92.6 0.082 1.8E-06 45.7 2.3 17 151-167 5-21 (121)
164 KOG3079|consensus 92.4 1.3 2.8E-05 43.5 10.5 136 151-292 14-192 (195)
165 PRK00023 cmk cytidylate kinase 92.4 4.2 9E-05 40.2 14.4 88 202-293 122-221 (225)
166 KOG2222|consensus 92.4 0.06 1.3E-06 58.8 1.5 48 50-107 551-598 (848)
167 COG1618 Predicted nucleotide k 92.3 0.66 1.4E-05 44.8 8.1 51 190-241 118-170 (179)
168 cd02027 APSK Adenosine 5'-phos 92.2 0.98 2.1E-05 41.5 9.1 90 150-241 4-113 (149)
169 PRK12288 GTPase RsgA; Reviewed 92.2 0.097 2.1E-06 55.3 2.7 34 150-183 210-250 (347)
170 PRK00098 GTPase RsgA; Reviewed 92.1 0.12 2.7E-06 53.0 3.3 32 151-183 170-209 (298)
171 PRK08099 bifunctional DNA-bind 92.0 1.7 3.7E-05 46.9 12.0 143 144-297 216-396 (399)
172 PF01926 MMR_HSR1: 50S ribosom 92.0 0.15 3.2E-06 44.0 3.2 33 150-183 4-37 (116)
173 cd01128 rho_factor Transcripti 91.7 0.41 8.9E-06 48.4 6.5 18 150-167 21-38 (249)
174 TIGR00157 ribosome small subun 91.6 0.13 2.8E-06 51.5 2.8 17 151-167 126-142 (245)
175 PRK06620 hypothetical protein; 91.4 0.67 1.5E-05 45.5 7.5 95 150-244 49-158 (214)
176 PF08477 Miro: Miro-like prote 91.4 0.13 2.8E-06 44.0 2.2 20 148-167 1-21 (119)
177 PF00004 AAA: ATPase family as 91.3 0.24 5.2E-06 42.7 3.9 18 150-167 3-20 (132)
178 PRK12289 GTPase RsgA; Reviewed 91.2 0.16 3.5E-06 53.8 3.2 33 151-183 178-217 (352)
179 COG0237 CoaE Dephospho-CoA kin 91.2 2.1 4.5E-05 42.1 10.7 97 194-297 98-196 (201)
180 COG0572 Udk Uridine kinase [Nu 91.2 1.3 2.9E-05 44.2 9.3 73 222-295 126-208 (218)
181 KOG4773|consensus 91.1 0.049 1.1E-06 57.3 -0.8 48 50-107 178-225 (386)
182 PLN02199 shikimate kinase 91.0 2.5 5.4E-05 44.3 11.5 139 149-297 105-292 (303)
183 KOG3601|consensus 91.0 0.048 1E-06 54.0 -0.9 48 52-109 5-53 (222)
184 cd01858 NGP_1 NGP-1. Autoanti 91.0 0.16 3.5E-06 46.5 2.6 34 150-183 107-140 (157)
185 COG2074 2-phosphoglycerate kin 90.9 3.3 7.1E-05 42.8 11.9 93 195-293 179-287 (299)
186 cd02026 PRK Phosphoribulokinas 90.9 0.93 2E-05 46.3 8.2 55 223-278 115-177 (273)
187 TIGR00436 era GTP-binding prot 90.8 0.17 3.7E-06 50.9 2.7 37 147-183 1-38 (270)
188 PLN02840 tRNA dimethylallyltra 90.8 0.36 7.8E-06 52.5 5.3 61 151-211 27-119 (421)
189 PLN02165 adenylate isopentenyl 90.7 1.6 3.5E-05 46.2 10.0 22 146-167 42-65 (334)
190 PF00625 Guanylate_kin: Guanyl 90.5 0.36 7.8E-06 45.5 4.6 39 414-457 1-39 (183)
191 PF02492 cobW: CobW/HypB/UreG, 90.4 4.2 9E-05 38.4 11.6 85 151-235 6-126 (178)
192 PF03193 DUF258: Protein of un 90.3 0.22 4.8E-06 47.4 2.9 17 151-167 41-57 (161)
193 TIGR00017 cmk cytidylate kinas 90.0 6.8 0.00015 38.7 13.1 89 195-288 114-214 (217)
194 TIGR03015 pepcterm_ATPase puta 89.9 0.72 1.6E-05 45.4 6.3 17 151-167 49-65 (269)
195 PRK13342 recombination factor 89.5 1.4 2.9E-05 47.3 8.4 19 149-167 40-58 (413)
196 PRK13951 bifunctional shikimat 89.5 1.8 3.9E-05 47.9 9.5 89 151-247 6-114 (488)
197 KOG3632|consensus 89.4 0.21 4.6E-06 58.6 2.3 58 51-111 1248-1306(1335)
198 COG1162 Predicted GTPases [Gen 89.2 0.23 4.9E-06 51.8 2.2 17 151-167 170-186 (301)
199 cd04163 Era Era subfamily. Er 89.1 0.27 5.8E-06 43.1 2.3 21 148-168 5-26 (168)
200 PRK05506 bifunctional sulfate 89.0 2.2 4.7E-05 48.4 9.9 143 147-292 460-627 (632)
201 cd00009 AAA The AAA+ (ATPases 88.8 0.78 1.7E-05 39.0 4.9 18 150-167 24-41 (151)
202 PRK09087 hypothetical protein; 88.8 1.5 3.2E-05 43.5 7.5 93 151-244 50-164 (226)
203 PLN02318 phosphoribulokinase/u 88.8 1.5 3.3E-05 50.0 8.3 20 151-170 71-91 (656)
204 smart00382 AAA ATPases associa 88.7 0.32 6.8E-06 40.8 2.4 17 151-167 8-24 (148)
205 PF10662 PduV-EutP: Ethanolami 88.7 0.29 6.3E-06 45.8 2.3 21 147-167 2-23 (143)
206 PRK07429 phosphoribulokinase; 88.6 1.8 4E-05 45.5 8.4 17 151-167 14-30 (327)
207 COG3265 GntK Gluconate kinase 88.5 12 0.00026 35.8 12.9 136 151-291 1-157 (161)
208 cd01855 YqeH YqeH. YqeH is an 88.1 0.38 8.3E-06 45.3 2.8 40 144-183 125-173 (190)
209 KOG2996|consensus 88.1 0.26 5.5E-06 55.2 1.8 38 70-108 626-664 (865)
210 cd04164 trmE TrmE (MnmE, ThdF, 88.0 0.39 8.4E-06 42.1 2.6 32 151-182 7-38 (157)
211 TIGR00635 ruvB Holliday juncti 87.7 1.6 3.5E-05 44.0 7.2 19 149-167 34-52 (305)
212 COG1703 ArgK Putative periplas 87.7 4.4 9.5E-05 42.7 10.3 139 144-306 46-230 (323)
213 cd00876 Ras Ras family. The R 87.6 0.48 1E-05 41.8 2.9 18 150-167 4-21 (160)
214 cd01895 EngA2 EngA2 subfamily. 87.5 0.5 1.1E-05 42.0 3.0 36 148-183 4-40 (174)
215 PF05496 RuvB_N: Holliday junc 87.4 0.63 1.4E-05 46.9 4.0 65 148-212 53-139 (233)
216 PF08433 KTI12: Chromatin asso 87.4 2.2 4.8E-05 43.6 8.0 134 151-288 7-166 (270)
217 PF08303 tRNA_lig_kinase: tRNA 87.4 9.1 0.0002 37.0 11.5 20 151-170 5-25 (168)
218 cd01130 VirB11-like_ATPase Typ 87.3 7.6 0.00016 36.8 11.1 97 151-247 31-149 (186)
219 cd04119 RJL RJL (RabJ-Like) su 87.2 0.47 1E-05 42.2 2.7 20 148-167 2-22 (168)
220 cd01870 RhoA_like RhoA-like su 87.2 0.51 1.1E-05 42.9 2.9 21 147-167 2-23 (175)
221 PRK12608 transcription termina 86.8 0.99 2.1E-05 48.6 5.2 157 49-213 32-230 (380)
222 cd01881 Obg_like The Obg-like 86.7 0.39 8.4E-06 43.3 1.9 31 151-183 2-33 (176)
223 PRK00089 era GTPase Era; Revie 86.5 0.45 9.7E-06 48.0 2.4 33 151-183 11-43 (292)
224 COG1116 TauB ABC-type nitrate/ 86.5 0.5 1.1E-05 48.0 2.7 21 147-167 29-51 (248)
225 KOG1191|consensus 86.3 1 2.2E-05 50.0 5.0 61 151-211 274-358 (531)
226 cd01849 YlqF_related_GTPase Yl 86.2 0.7 1.5E-05 42.3 3.3 36 147-183 101-138 (155)
227 PRK13477 bifunctional pantoate 86.1 16 0.00035 40.9 14.4 17 151-167 290-306 (512)
228 cd04138 H_N_K_Ras_like H-Ras/N 85.8 0.53 1.1E-05 41.6 2.2 20 148-167 3-23 (162)
229 COG2256 MGS1 ATPase related to 85.6 2 4.4E-05 46.6 6.8 19 149-167 52-70 (436)
230 COG1100 GTPase SAR1 and relate 85.5 0.62 1.3E-05 44.1 2.7 20 148-167 7-27 (219)
231 PF13555 AAA_29: P-loop contai 85.5 0.66 1.4E-05 37.6 2.4 19 149-167 27-45 (62)
232 cd04127 Rab27A Rab27a subfamil 85.1 0.68 1.5E-05 42.4 2.7 20 148-167 6-26 (180)
233 COG3172 NadR Predicted ATPase/ 85.0 8.9 0.00019 37.3 10.1 145 144-297 5-184 (187)
234 cd04155 Arl3 Arl3 subfamily. 85.0 0.72 1.6E-05 41.8 2.7 21 147-167 15-36 (173)
235 cd01854 YjeQ_engC YjeQ/EngC. 84.8 0.77 1.7E-05 47.0 3.2 17 151-167 167-183 (287)
236 COG3840 ThiQ ABC-type thiamine 84.7 1.1 2.4E-05 44.4 4.0 37 147-183 25-68 (231)
237 PF07728 AAA_5: AAA domain (dy 84.6 0.94 2E-05 40.3 3.3 33 150-182 4-38 (139)
238 COG3839 MalK ABC-type sugar tr 84.6 0.67 1.5E-05 49.1 2.6 17 151-167 35-51 (338)
239 smart00173 RAS Ras subfamily o 84.5 0.66 1.4E-05 41.6 2.3 20 148-167 2-22 (164)
240 PF04665 Pox_A32: Poxvirus A32 84.5 0.73 1.6E-05 46.6 2.7 30 148-177 15-46 (241)
241 cd01898 Obg Obg subfamily. Th 84.4 0.87 1.9E-05 41.0 3.0 32 150-183 5-37 (170)
242 cd01894 EngA1 EngA1 subfamily. 84.4 0.6 1.3E-05 41.0 1.9 34 150-183 2-35 (157)
243 cd03115 SRP The signal recogni 84.4 2.8 6.1E-05 38.8 6.4 33 151-183 6-41 (173)
244 COG4185 Uncharacterized protei 84.3 0.51 1.1E-05 45.6 1.5 157 151-307 8-185 (187)
245 COG1126 GlnQ ABC-type polar am 84.3 0.74 1.6E-05 46.4 2.6 17 151-167 34-50 (240)
246 cd04113 Rab4 Rab4 subfamily. 84.2 0.7 1.5E-05 41.4 2.3 18 150-167 5-22 (161)
247 PRK05800 cobU adenosylcobinami 84.2 1.9 4.1E-05 41.0 5.3 17 151-167 7-23 (170)
248 PRK06761 hypothetical protein; 84.0 4.2 9.1E-05 42.1 8.1 95 151-245 9-127 (282)
249 smart00175 RAB Rab subfamily o 83.8 0.76 1.6E-05 40.9 2.3 20 148-167 2-22 (164)
250 PF00485 PRK: Phosphoribulokin 83.8 0.79 1.7E-05 43.7 2.6 55 224-279 127-189 (194)
251 cd04159 Arl10_like Arl10-like 83.8 0.8 1.7E-05 39.9 2.4 18 150-167 4-21 (159)
252 PRK13849 putative crown gall t 83.7 4.4 9.5E-05 40.3 7.9 21 200-220 28-49 (231)
253 cd04140 ARHI_like ARHI subfami 83.7 0.72 1.6E-05 41.9 2.2 20 148-167 3-23 (165)
254 KOG3523|consensus 83.7 0.43 9.3E-06 53.6 0.8 55 51-113 612-666 (695)
255 COG3842 PotA ABC-type spermidi 83.7 0.89 1.9E-05 48.4 3.1 21 150-170 36-58 (352)
256 PRK12678 transcription termina 83.6 2 4.4E-05 48.8 5.9 72 149-220 420-520 (672)
257 PRK14956 DNA polymerase III su 83.6 3.4 7.3E-05 45.9 7.6 19 149-167 44-62 (484)
258 cd01862 Rab7 Rab7 subfamily. 83.3 0.82 1.8E-05 41.1 2.3 20 148-167 2-22 (172)
259 PRK07764 DNA polymerase III su 83.3 2.9 6.2E-05 49.3 7.3 19 149-167 41-59 (824)
260 TIGR02528 EutP ethanolamine ut 83.2 0.83 1.8E-05 40.2 2.3 20 148-167 2-22 (142)
261 cd03238 ABC_UvrA The excision 83.2 0.93 2E-05 43.3 2.8 16 151-166 27-42 (176)
262 COG2884 FtsE Predicted ATPase 83.2 0.88 1.9E-05 45.2 2.6 20 151-170 34-55 (223)
263 PF14603 hSH3: Helically-exten 83.2 1.7 3.6E-05 37.8 3.9 41 69-111 31-71 (89)
264 PF00071 Ras: Ras family; Int 83.1 1 2.2E-05 40.2 2.9 18 150-167 4-21 (162)
265 PRK04195 replication factor C 83.1 21 0.00045 39.2 13.5 19 149-167 43-61 (482)
266 PF00005 ABC_tran: ABC transpo 82.9 1.1 2.4E-05 39.5 3.0 18 150-167 16-33 (137)
267 COG4619 ABC-type uncharacteriz 82.9 0.99 2.2E-05 44.3 2.8 24 144-167 28-51 (223)
268 cd04115 Rab33B_Rab33A Rab33B/R 82.9 1 2.2E-05 41.2 2.8 17 151-167 8-24 (170)
269 cd01860 Rab5_related Rab5-rela 82.9 0.86 1.9E-05 40.7 2.3 20 148-167 3-23 (163)
270 cd00154 Rab Rab family. Rab G 82.8 0.9 2E-05 39.4 2.4 20 148-167 2-22 (159)
271 cd04136 Rap_like Rap-like subf 82.8 0.99 2.1E-05 40.2 2.7 20 148-167 3-23 (163)
272 cd00820 PEPCK_HprK Phosphoenol 82.7 0.92 2E-05 40.5 2.3 17 150-166 20-36 (107)
273 cd04101 RabL4 RabL4 (Rab-like4 82.7 1.1 2.4E-05 40.1 3.0 19 149-167 3-22 (164)
274 cd00879 Sar1 Sar1 subfamily. 82.7 1.1 2.4E-05 41.5 3.1 21 147-167 20-41 (190)
275 cd00157 Rho Rho (Ras homology) 82.7 0.88 1.9E-05 40.9 2.3 20 148-167 2-22 (171)
276 cd01876 YihA_EngB The YihA (En 82.6 1.1 2.3E-05 39.4 2.8 18 150-167 4-21 (170)
277 cd04123 Rab21 Rab21 subfamily. 82.6 0.91 2E-05 40.1 2.3 18 150-167 5-22 (162)
278 cd01897 NOG NOG1 is a nucleola 82.5 1.1 2.4E-05 40.3 2.9 20 148-167 2-22 (168)
279 PRK07994 DNA polymerase III su 82.5 2.6 5.6E-05 48.4 6.4 19 149-167 42-60 (647)
280 PF13401 AAA_22: AAA domain; P 82.5 1 2.2E-05 39.1 2.5 17 151-167 10-26 (131)
281 PRK14961 DNA polymerase III su 82.5 4.9 0.00011 42.4 8.1 19 149-167 42-60 (363)
282 cd00878 Arf_Arl Arf (ADP-ribos 82.3 1.2 2.7E-05 39.6 3.1 18 150-167 4-21 (158)
283 cd04139 RalA_RalB RalA/RalB su 82.3 0.94 2E-05 40.2 2.3 20 148-167 2-22 (164)
284 COG1117 PstB ABC-type phosphat 82.1 0.96 2.1E-05 45.7 2.5 17 151-167 39-55 (253)
285 cd02025 PanK Pantothenate kina 82.0 0.84 1.8E-05 45.0 2.0 17 151-167 5-21 (220)
286 cd01864 Rab19 Rab19 subfamily. 82.0 1.1 2.4E-05 40.5 2.6 20 148-167 5-25 (165)
287 cd04107 Rab32_Rab38 Rab38/Rab3 81.9 1.2 2.5E-05 42.3 2.9 19 149-167 3-22 (201)
288 PF11302 DUF3104: Protein of u 81.7 1.4 3.1E-05 37.2 2.9 27 70-96 3-35 (75)
289 cd01861 Rab6 Rab6 subfamily. 81.7 1 2.2E-05 40.1 2.3 20 148-167 2-22 (161)
290 PRK14493 putative bifunctional 81.7 6.2 0.00013 40.5 8.2 17 151-167 7-23 (274)
291 cd04146 RERG_RasL11_like RERG/ 81.6 1.1 2.4E-05 40.5 2.5 18 150-167 4-21 (165)
292 COG1136 SalX ABC-type antimicr 81.3 1.1 2.5E-05 44.9 2.7 21 147-167 31-53 (226)
293 cd00877 Ran Ran (Ras-related n 81.2 1.2 2.7E-05 40.8 2.8 20 148-167 2-22 (166)
294 COG0283 Cmk Cytidylate kinase 81.2 13 0.00029 37.4 10.0 93 196-292 114-218 (222)
295 cd04160 Arfrp1 Arfrp1 subfamil 81.1 1.2 2.6E-05 40.0 2.6 18 150-167 4-21 (167)
296 TIGR01166 cbiO cobalt transpor 81.1 1.4 3E-05 41.5 3.1 17 151-167 24-40 (190)
297 cd03225 ABC_cobalt_CbiO_domain 81.1 1.2 2.6E-05 42.5 2.7 17 151-167 33-49 (211)
298 cd04134 Rho3 Rho3 subfamily. 81.1 1.3 2.8E-05 41.7 2.8 20 148-167 2-22 (189)
299 cd04156 ARLTS1 ARLTS1 subfamil 81.1 1.2 2.6E-05 39.7 2.5 19 149-167 2-21 (160)
300 PTZ00454 26S protease regulato 81.1 2.1 4.5E-05 46.2 4.7 22 146-167 180-201 (398)
301 PF01202 SKI: Shikimate kinase 81.0 7.1 0.00015 36.0 7.7 54 190-247 50-107 (158)
302 cd03255 ABC_MJ0796_Lo1CDE_FtsE 81.0 1.4 2.9E-05 42.4 3.0 18 150-167 35-52 (218)
303 TIGR00767 rho transcription te 81.0 3.1 6.6E-05 45.4 6.0 64 150-213 173-265 (415)
304 TIGR00231 small_GTP small GTP- 80.9 1.2 2.5E-05 38.2 2.3 20 148-167 3-23 (161)
305 cd01865 Rab3 Rab3 subfamily. 80.9 1.2 2.6E-05 40.4 2.5 20 148-167 3-23 (165)
306 cd03261 ABC_Org_Solvent_Resist 80.8 1.5 3.2E-05 42.8 3.3 17 151-167 32-48 (235)
307 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 80.8 1.1 2.4E-05 40.4 2.3 20 148-167 4-24 (166)
308 TIGR01242 26Sp45 26S proteasom 80.7 1.8 3.9E-05 45.5 4.0 22 146-167 157-178 (364)
309 TIGR00960 3a0501s02 Type II (G 80.7 1.3 2.8E-05 42.6 2.7 17 151-167 35-51 (216)
310 PRK14960 DNA polymerase III su 80.6 10 0.00023 43.9 10.3 19 149-167 41-59 (702)
311 cd02019 NK Nucleoside/nucleoti 80.6 1.2 2.5E-05 35.8 2.1 17 151-167 5-21 (69)
312 cd04137 RheB Rheb (Ras Homolog 80.6 1.2 2.5E-05 40.9 2.3 20 148-167 3-23 (180)
313 PTZ00132 GTP-binding nuclear p 80.6 1.3 2.8E-05 42.4 2.7 20 148-167 11-31 (215)
314 COG1131 CcmA ABC-type multidru 80.5 1.4 3.1E-05 45.2 3.2 21 147-167 31-53 (293)
315 cd04108 Rab36_Rab34 Rab34/Rab3 80.5 1.5 3.2E-05 40.6 3.0 20 148-167 2-22 (170)
316 PRK10751 molybdopterin-guanine 80.4 1.4 3.1E-05 42.3 3.0 17 151-167 12-28 (173)
317 KOG3220|consensus 80.3 21 0.00046 35.9 11.0 81 199-289 104-190 (225)
318 cd04122 Rab14 Rab14 subfamily. 80.3 1.4 3.1E-05 39.9 2.8 20 148-167 4-24 (166)
319 PRK12298 obgE GTPase CgtA; Rev 80.2 1.3 2.8E-05 47.6 2.8 31 151-183 165-196 (390)
320 PRK12323 DNA polymerase III su 80.2 4 8.7E-05 47.1 6.8 19 149-167 42-60 (700)
321 KOG0738|consensus 80.2 8 0.00017 42.3 8.6 83 148-257 248-332 (491)
322 COG3638 ABC-type phosphate/pho 80.2 1.3 2.8E-05 45.2 2.6 17 151-167 36-52 (258)
323 cd04110 Rab35 Rab35 subfamily. 80.2 1.4 3E-05 41.9 2.8 20 148-167 8-28 (199)
324 PRK15177 Vi polysaccharide exp 80.0 1.6 3.5E-05 42.4 3.2 17 151-167 19-35 (213)
325 PTZ00301 uridine kinase; Provi 80.0 1.2 2.5E-05 43.9 2.2 70 223-293 126-205 (210)
326 TIGR02211 LolD_lipo_ex lipopro 80.0 1.5 3.3E-05 42.1 3.1 18 150-167 36-53 (221)
327 PRK00454 engB GTP-binding prot 80.0 1.5 3.3E-05 40.6 2.9 20 148-167 26-46 (196)
328 COG1120 FepC ABC-type cobalami 80.0 1.6 3.4E-05 44.7 3.2 21 147-167 28-50 (258)
329 cd04145 M_R_Ras_like M-Ras/R-R 79.9 1.5 3.3E-05 39.0 2.8 20 148-167 4-24 (164)
330 cd00544 CobU Adenosylcobinamid 79.9 3.8 8.2E-05 39.0 5.6 18 150-167 4-21 (169)
331 PRK07993 DNA polymerase III su 79.8 3.7 8.1E-05 43.2 6.1 94 149-246 28-159 (334)
332 cd04129 Rho2 Rho2 subfamily. 79.8 1.3 2.8E-05 41.5 2.4 20 148-167 3-23 (187)
333 cd03263 ABC_subfamily_A The AB 79.7 1.6 3.6E-05 41.9 3.1 17 151-167 34-50 (220)
334 cd04157 Arl6 Arl6 subfamily. 79.6 1.4 3E-05 39.2 2.4 18 150-167 4-21 (162)
335 TIGR00450 mnmE_trmE_thdF tRNA 79.5 1.3 2.8E-05 48.3 2.6 36 148-183 205-241 (442)
336 PRK00149 dnaA chromosomal repl 79.5 4.1 8.9E-05 44.1 6.4 50 195-244 237-291 (450)
337 KOG3775|consensus 79.5 1.1 2.4E-05 48.0 2.0 54 50-111 265-318 (482)
338 cd03257 ABC_NikE_OppD_transpor 79.5 1.6 3.5E-05 42.0 3.0 17 151-167 37-53 (228)
339 cd03226 ABC_cobalt_CbiO_domain 79.4 1.8 3.8E-05 41.3 3.2 18 150-167 31-48 (205)
340 cd01867 Rab8_Rab10_Rab13_like 79.4 1.3 2.8E-05 40.3 2.2 20 148-167 5-25 (167)
341 TIGR02315 ABC_phnC phosphonate 79.3 1.6 3.5E-05 42.6 3.0 18 150-167 33-50 (243)
342 KOG0199|consensus 79.3 1.7 3.7E-05 50.3 3.5 53 50-110 377-430 (1039)
343 cd04118 Rab24 Rab24 subfamily. 79.3 1.4 3.1E-05 41.0 2.5 20 148-167 2-22 (193)
344 cd03262 ABC_HisP_GlnQ_permease 79.2 1.7 3.7E-05 41.5 3.1 17 151-167 32-48 (213)
345 PRK13341 recombination factor 79.2 4.6 9.9E-05 47.0 7.0 19 149-167 56-74 (725)
346 cd04135 Tc10 TC10 subfamily. 79.2 1.6 3.5E-05 39.6 2.8 18 150-167 5-22 (174)
347 cd04132 Rho4_like Rho4-like su 79.1 1.7 3.8E-05 40.1 3.0 20 148-167 2-22 (187)
348 PF05729 NACHT: NACHT domain 79.0 1.5 3.2E-05 39.1 2.4 17 151-167 6-22 (166)
349 PF13191 AAA_16: AAA ATPase do 78.9 1.3 2.9E-05 40.4 2.2 17 151-167 30-46 (185)
350 cd03222 ABC_RNaseL_inhibitor T 78.9 1.8 3.8E-05 41.5 3.0 17 151-167 31-47 (177)
351 PRK06647 DNA polymerase III su 78.9 5.4 0.00012 45.0 7.3 19 149-167 42-60 (563)
352 cd03259 ABC_Carb_Solutes_like 78.9 1.6 3.4E-05 41.8 2.7 18 150-167 31-48 (213)
353 cd04161 Arl2l1_Arl13_like Arl2 78.9 1.6 3.4E-05 40.2 2.6 18 150-167 4-21 (167)
354 cd03260 ABC_PstB_phosphate_tra 78.9 1.6 3.4E-05 42.2 2.8 17 151-167 32-48 (227)
355 KOG1969|consensus 78.9 9.5 0.00021 44.5 9.2 21 224-244 459-479 (877)
356 COG1121 ZnuC ABC-type Mn/Zn tr 78.9 1.8 3.8E-05 44.3 3.2 21 147-167 30-52 (254)
357 cd03258 ABC_MetN_methionine_tr 78.8 1.7 3.8E-05 42.1 3.0 18 150-167 36-53 (233)
358 cd03292 ABC_FtsE_transporter F 78.8 1.8 3.9E-05 41.4 3.1 18 150-167 32-49 (214)
359 cd01863 Rab18 Rab18 subfamily. 78.7 1.5 3.2E-05 39.2 2.3 19 149-167 3-22 (161)
360 cd03224 ABC_TM1139_LivF_branch 78.7 1.8 3.9E-05 41.6 3.1 18 150-167 31-48 (222)
361 cd01868 Rab11_like Rab11-like. 78.7 1.5 3.2E-05 39.5 2.3 20 148-167 5-25 (165)
362 cd03296 ABC_CysA_sulfate_impor 78.6 1.6 3.5E-05 42.7 2.8 17 151-167 34-50 (239)
363 cd03235 ABC_Metallic_Cations A 78.6 1.9 4.1E-05 41.3 3.2 17 151-167 31-47 (213)
364 PRK14962 DNA polymerase III su 78.6 14 0.0003 40.9 10.2 19 149-167 40-58 (472)
365 cd04124 RabL2 RabL2 subfamily. 78.6 1.5 3.2E-05 39.9 2.3 17 151-167 6-22 (161)
366 cd01131 PilT Pilus retraction 78.6 1.5 3.2E-05 42.3 2.4 21 147-167 2-23 (198)
367 TIGR01188 drrA daunorubicin re 78.6 1.8 4E-05 44.2 3.3 21 147-167 19-41 (302)
368 cd04114 Rab30 Rab30 subfamily. 78.5 1.5 3.2E-05 39.5 2.3 17 151-167 13-29 (169)
369 KOG3725|consensus 78.5 1.1 2.4E-05 45.9 1.6 51 49-109 319-371 (375)
370 cd04175 Rap1 Rap1 subgroup. T 78.4 1.8 3.8E-05 39.0 2.8 20 148-167 3-23 (164)
371 PRK06547 hypothetical protein; 78.4 1.7 3.6E-05 41.4 2.7 17 151-167 21-37 (172)
372 PRK14964 DNA polymerase III su 78.4 4.9 0.00011 44.7 6.7 19 149-167 39-57 (491)
373 TIGR02673 FtsE cell division A 78.3 2 4.4E-05 41.1 3.3 17 151-167 34-50 (214)
374 cd03256 ABC_PhnC_transporter A 78.2 1.8 4E-05 42.0 3.0 18 150-167 32-49 (241)
375 PTZ00361 26 proteosome regulat 78.2 2.9 6.3E-05 45.8 4.8 22 146-167 218-239 (438)
376 smart00174 RHO Rho (Ras homolo 78.2 1.9 4.2E-05 39.0 3.0 18 150-167 3-20 (174)
377 cd03293 ABC_NrtD_SsuB_transpor 78.2 1.7 3.7E-05 41.9 2.7 17 151-167 36-52 (220)
378 COG1125 OpuBA ABC-type proline 78.2 1.7 3.7E-05 45.0 2.8 19 149-167 31-49 (309)
379 PF13521 AAA_28: AAA domain; P 78.1 1.2 2.7E-05 40.8 1.7 21 148-168 1-22 (163)
380 TIGR03608 L_ocin_972_ABC putat 78.1 1.7 3.8E-05 41.2 2.7 18 150-167 29-46 (206)
381 PRK14949 DNA polymerase III su 78.1 5.5 0.00012 47.4 7.2 19 149-167 42-60 (944)
382 PRK00080 ruvB Holliday junctio 78.1 3.8 8.3E-05 42.3 5.5 19 149-167 55-73 (328)
383 PRK07940 DNA polymerase III su 78.0 6.2 0.00013 42.6 7.2 19 149-167 40-58 (394)
384 cd03269 ABC_putative_ATPase Th 78.0 1.9 4.2E-05 41.1 3.1 18 150-167 31-48 (210)
385 cd01866 Rab2 Rab2 subfamily. 78.0 1.6 3.4E-05 39.9 2.3 20 148-167 6-26 (168)
386 cd03298 ABC_ThiQ_thiamine_tran 78.0 2 4.3E-05 41.1 3.1 18 150-167 29-46 (211)
387 TIGR00362 DnaA chromosomal rep 77.9 6.1 0.00013 42.1 7.1 50 195-244 225-279 (405)
388 cd01878 HflX HflX subfamily. 77.9 1.9 4E-05 40.8 2.9 20 148-167 43-63 (204)
389 TIGR00150 HI0065_YjeE ATPase, 77.8 2.2 4.7E-05 39.5 3.2 17 151-167 28-44 (133)
390 cd04103 Centaurin_gamma Centau 77.7 1.8 4E-05 39.7 2.7 19 149-167 3-22 (158)
391 PRK14721 flhF flagellar biosyn 77.7 4.1 8.8E-05 44.5 5.7 38 146-183 190-235 (420)
392 cd01893 Miro1 Miro1 subfamily. 77.7 1.7 3.8E-05 39.5 2.5 20 148-167 2-22 (166)
393 cd03265 ABC_DrrA DrrA is the A 77.7 2.1 4.5E-05 41.3 3.2 18 150-167 31-48 (220)
394 PF03668 ATP_bind_2: P-loop AT 77.7 21 0.00045 37.3 10.5 73 222-297 80-156 (284)
395 PRK14086 dnaA chromosomal repl 77.6 5.8 0.00013 45.4 7.0 52 193-244 401-457 (617)
396 cd04116 Rab9 Rab9 subfamily. 77.6 2 4.3E-05 38.9 2.8 20 148-167 7-27 (170)
397 PF03266 NTPase_1: NTPase; In 77.5 1.5 3.3E-05 41.6 2.1 17 151-167 5-21 (168)
398 cd04178 Nucleostemin_like Nucl 77.4 1.8 3.9E-05 41.1 2.6 35 148-183 119-155 (172)
399 cd04117 Rab15 Rab15 subfamily. 77.4 2 4.4E-05 39.0 2.9 18 150-167 5-22 (161)
400 KOG4792|consensus 77.3 2.7 5.9E-05 42.5 3.9 53 47-107 227-279 (293)
401 cd03254 ABCC_Glucan_exporter_l 77.2 2.1 4.5E-05 41.4 3.0 18 150-167 34-51 (229)
402 cd03229 ABC_Class3 This class 77.2 2.2 4.7E-05 40.0 3.1 18 150-167 31-48 (178)
403 PF03205 MobB: Molybdopterin g 77.2 1.7 3.7E-05 40.0 2.3 17 151-167 6-22 (140)
404 PRK11248 tauB taurine transpor 77.2 2.2 4.8E-05 42.5 3.3 17 151-167 33-49 (255)
405 cd03301 ABC_MalK_N The N-termi 77.2 2.2 4.8E-05 40.8 3.2 18 150-167 31-48 (213)
406 PRK14952 DNA polymerase III su 77.1 7.3 0.00016 44.2 7.7 19 149-167 39-57 (584)
407 cd04106 Rab23_lke Rab23-like s 77.0 2.1 4.6E-05 38.1 2.8 17 151-167 6-22 (162)
408 PF07724 AAA_2: AAA domain (Cd 77.0 1.7 3.7E-05 41.3 2.4 17 151-167 9-25 (171)
409 PRK13796 GTPase YqeH; Provisio 77.0 1.8 4E-05 45.8 2.8 33 151-183 166-203 (365)
410 cd04154 Arl2 Arl2 subfamily. 76.9 1.7 3.6E-05 39.9 2.2 21 147-167 15-36 (173)
411 cd01129 PulE-GspE PulE/GspE Th 76.9 8.3 0.00018 39.1 7.4 96 150-246 85-197 (264)
412 PRK13537 nodulation ABC transp 76.9 2.2 4.7E-05 44.0 3.2 21 147-167 33-55 (306)
413 cd03219 ABC_Mj1267_LivG_branch 76.9 2 4.4E-05 41.7 2.9 18 150-167 31-48 (236)
414 KOG1451|consensus 76.8 2.5 5.4E-05 47.8 3.8 52 47-108 756-808 (812)
415 cd03264 ABC_drug_resistance_li 76.7 1.8 3.8E-05 41.5 2.4 17 151-167 31-47 (211)
416 PRK11629 lolD lipoprotein tran 76.7 2 4.3E-05 41.9 2.8 17 151-167 41-57 (233)
417 cd03295 ABC_OpuCA_Osmoprotecti 76.6 2.2 4.8E-05 41.8 3.1 18 150-167 32-49 (242)
418 TIGR01223 Pmev_kin_anim phosph 76.6 18 0.00038 35.5 9.1 17 151-167 5-21 (182)
419 TIGR03598 GTPase_YsxC ribosome 76.6 2.4 5.2E-05 39.4 3.2 20 148-167 20-40 (179)
420 cd03245 ABCC_bacteriocin_expor 76.6 2.2 4.8E-05 41.0 3.0 18 150-167 35-52 (220)
421 PRK13539 cytochrome c biogenes 76.5 2.8 6.1E-05 40.2 3.7 21 147-167 28-50 (207)
422 TIGR00101 ureG urease accessor 76.4 2.2 4.8E-05 41.3 3.0 17 151-167 7-23 (199)
423 PRK10584 putative ABC transpor 76.4 2.4 5.2E-05 41.1 3.2 21 147-167 36-58 (228)
424 cd03272 ABC_SMC3_euk Eukaryoti 76.3 1.8 3.9E-05 42.2 2.4 17 150-166 28-44 (243)
425 PLN02748 tRNA dimethylallyltra 76.3 5.3 0.00011 44.2 6.1 58 151-211 28-120 (468)
426 COG1127 Ttg2A ABC-type transpo 76.3 2.3 5.1E-05 43.5 3.1 26 146-171 33-62 (263)
427 cd01852 AIG1 AIG1 (avrRpt2-ind 76.2 2.2 4.8E-05 40.5 2.9 20 148-167 2-22 (196)
428 TIGR01978 sufC FeS assembly AT 76.2 2.1 4.5E-05 41.7 2.7 18 150-167 31-48 (243)
429 cd00882 Ras_like_GTPase Ras-li 76.1 1.5 3.3E-05 36.7 1.6 17 151-167 2-18 (157)
430 TIGR02868 CydC thiol reductant 76.1 2.2 4.9E-05 46.7 3.3 17 151-167 367-383 (529)
431 PRK03992 proteasome-activating 76.1 4 8.6E-05 43.7 5.0 39 423-466 334-372 (389)
432 PRK14267 phosphate ABC transpo 76.1 2.1 4.5E-05 42.2 2.7 17 151-167 36-52 (253)
433 cd03268 ABC_BcrA_bacitracin_re 76.1 2.1 4.6E-05 40.8 2.7 18 150-167 31-48 (208)
434 TIGR01288 nodI ATP-binding ABC 76.0 2.4 5.2E-05 43.4 3.3 17 151-167 36-52 (303)
435 cd03218 ABC_YhbG The ABC trans 76.0 2.5 5.4E-05 40.9 3.2 18 150-167 31-48 (232)
436 PRK14242 phosphate transporter 76.0 2.1 4.6E-05 42.2 2.8 18 150-167 37-54 (253)
437 TIGR03864 PQQ_ABC_ATP ABC tran 75.9 2.4 5.1E-05 41.5 3.0 18 150-167 32-49 (236)
438 cd03112 CobW_like The function 75.9 2.8 6.1E-05 38.9 3.4 17 151-167 6-22 (158)
439 PRK14088 dnaA chromosomal repl 75.9 5.9 0.00013 43.2 6.4 17 151-167 136-152 (440)
440 TIGR00176 mobB molybdopterin-g 75.9 2.1 4.6E-05 40.0 2.6 17 151-167 5-21 (155)
441 PRK15494 era GTPase Era; Provi 75.9 2 4.4E-05 45.0 2.7 34 148-183 54-90 (339)
442 cd04162 Arl9_Arfrp2_like Arl9/ 75.8 2.3 5E-05 39.0 2.8 18 150-167 4-21 (164)
443 cd01918 HprK_C HprK/P, the bif 75.8 2 4.3E-05 40.5 2.4 19 149-167 18-36 (149)
444 PRK13538 cytochrome c biogenes 75.8 3 6.5E-05 39.9 3.7 18 150-167 32-49 (204)
445 cd03266 ABC_NatA_sodium_export 75.7 2.4 5.2E-05 40.7 3.0 18 150-167 36-53 (218)
446 PRK05896 DNA polymerase III su 75.7 7.3 0.00016 44.5 7.2 19 149-167 42-60 (605)
447 TIGR03410 urea_trans_UrtE urea 75.6 2.4 5.2E-05 41.1 3.0 17 151-167 32-48 (230)
448 PRK10908 cell division protein 75.6 2.5 5.4E-05 40.8 3.1 18 150-167 33-50 (222)
449 PRK07667 uridine kinase; Provi 75.5 2 4.3E-05 41.1 2.4 17 151-167 23-39 (193)
450 PRK09493 glnQ glutamine ABC tr 75.5 2.6 5.7E-05 41.2 3.2 17 151-167 33-49 (240)
451 PRK13536 nodulation factor exp 75.5 2.5 5.4E-05 44.4 3.3 21 147-167 67-89 (340)
452 cd04105 SR_beta Signal recogni 75.5 2.7 5.8E-05 40.5 3.3 17 151-167 6-22 (203)
453 PRK13540 cytochrome c biogenes 75.4 2.8 6E-05 40.0 3.3 18 150-167 32-49 (200)
454 PRK14250 phosphate ABC transpo 75.4 2.7 5.8E-05 41.3 3.3 18 150-167 34-51 (241)
455 PF03029 ATP_bind_1: Conserved 75.4 1.8 4E-05 43.3 2.2 18 150-167 1-18 (238)
456 cd01120 RecA-like_NTPases RecA 75.3 2.1 4.6E-05 37.6 2.4 18 150-167 4-21 (165)
457 cd04131 Rnd Rnd subfamily. Th 75.3 2.4 5.2E-05 39.9 2.8 20 148-167 3-23 (178)
458 cd04158 ARD1 ARD1 subfamily. 75.2 2.2 4.8E-05 39.1 2.5 20 148-167 1-21 (169)
459 PRK11247 ssuB aliphatic sulfon 75.1 2.7 5.8E-05 42.2 3.3 17 151-167 44-60 (257)
460 PRK13541 cytochrome c biogenes 75.1 2.6 5.6E-05 40.0 3.0 18 150-167 31-48 (195)
461 cd03252 ABCC_Hemolysin The ABC 75.0 2.3 5.1E-05 41.4 2.8 18 150-167 33-50 (237)
462 PRK05564 DNA polymerase III su 75.0 10 0.00023 38.9 7.6 89 149-246 30-144 (313)
463 cd03274 ABC_SMC4_euk Eukaryoti 75.0 2 4.3E-05 42.0 2.2 16 151-166 31-46 (212)
464 PF00910 RNA_helicase: RNA hel 74.9 2.1 4.5E-05 37.2 2.1 18 150-167 3-20 (107)
465 cd03234 ABCG_White The White s 74.9 2.5 5.3E-05 41.1 2.9 17 151-167 39-55 (226)
466 PRK09376 rho transcription ter 74.9 6 0.00013 43.1 6.0 19 149-167 173-191 (416)
467 PRK13645 cbiO cobalt transport 74.9 2.5 5.4E-05 42.9 3.0 17 151-167 43-59 (289)
468 cd00880 Era_like Era (E. coli 74.9 1.9 4E-05 36.9 1.8 17 151-167 2-18 (163)
469 TIGR02323 CP_lyasePhnK phospho 74.8 2.6 5.6E-05 41.6 3.0 18 150-167 34-51 (253)
470 PF13173 AAA_14: AAA domain 74.8 2.3 5.1E-05 37.7 2.5 17 151-167 8-24 (128)
471 TIGR02770 nickel_nikD nickel i 74.8 2.4 5.1E-05 41.4 2.7 18 150-167 17-34 (230)
472 PF00350 Dynamin_N: Dynamin fa 74.8 2.9 6.2E-05 38.0 3.1 33 150-183 3-35 (168)
473 PF12775 AAA_7: P-loop contain 74.8 2.7 6E-05 42.9 3.3 26 147-172 33-62 (272)
474 PRK06645 DNA polymerase III su 74.7 8.8 0.00019 42.9 7.4 19 149-167 47-65 (507)
475 TIGR00554 panK_bact pantothena 74.7 2.3 4.9E-05 44.1 2.7 17 151-167 68-84 (290)
476 cd03232 ABC_PDR_domain2 The pl 74.6 2.4 5.2E-05 40.3 2.7 17 151-167 39-55 (192)
477 PRK11701 phnK phosphonate C-P 74.6 2.9 6.2E-05 41.5 3.3 18 150-167 37-54 (258)
478 TIGR03005 ectoine_ehuA ectoine 74.6 2.7 5.9E-05 41.4 3.1 18 150-167 31-48 (252)
479 cd01857 HSR1_MMR1 HSR1/MMR1. 74.6 2.9 6.3E-05 37.6 3.1 20 148-167 85-105 (141)
480 TIGR01184 ntrCD nitrate transp 74.5 2.8 6.1E-05 41.0 3.2 17 151-167 17-33 (230)
481 TIGR02314 ABC_MetN D-methionin 74.5 2.7 5.9E-05 44.3 3.3 21 147-167 31-53 (343)
482 cd04171 SelB SelB subfamily. 74.5 2.6 5.6E-05 37.3 2.7 17 151-167 6-22 (164)
483 PRK10895 lipopolysaccharide AB 74.4 2.8 6.1E-05 41.0 3.1 17 151-167 35-51 (241)
484 TIGR00972 3a0107s01c2 phosphat 74.4 2.5 5.3E-05 41.6 2.8 18 150-167 32-49 (247)
485 PRK15056 manganese/iron transp 74.4 2.8 6.1E-05 42.1 3.2 18 150-167 38-55 (272)
486 cd03237 ABC_RNaseL_inhibitor_d 74.4 2.8 6E-05 41.9 3.1 22 146-167 24-47 (246)
487 TIGR00073 hypB hydrogenase acc 74.3 2.7 5.8E-05 40.5 3.0 17 151-167 28-44 (207)
488 cd04125 RabA_like RabA-like su 74.3 2.2 4.8E-05 39.7 2.3 20 148-167 2-22 (188)
489 cd03223 ABCD_peroxisomal_ALDP 74.3 2.6 5.7E-05 39.2 2.8 18 150-167 32-49 (166)
490 cd04104 p47_IIGP_like p47 (47- 74.2 2.2 4.8E-05 40.7 2.3 17 151-167 7-23 (197)
491 cd04177 RSR1 RSR1 subgroup. R 74.2 2.2 4.8E-05 38.8 2.2 20 148-167 3-23 (168)
492 cd03216 ABC_Carb_Monos_I This 74.1 2.9 6.4E-05 38.8 3.1 18 150-167 31-48 (163)
493 cd04128 Spg1 Spg1p. Spg1p (se 74.1 2.5 5.5E-05 39.8 2.7 19 149-167 3-22 (182)
494 TIGR03594 GTPase_EngA ribosome 74.1 2.9 6.2E-05 44.5 3.4 34 150-183 4-37 (429)
495 PRK10247 putative ABC transpor 74.0 2.6 5.6E-05 41.0 2.8 18 150-167 38-55 (225)
496 TIGR02639 ClpA ATP-dependent C 74.0 9.6 0.00021 44.2 7.8 19 149-167 207-225 (731)
497 PRK11124 artP arginine transpo 74.0 2.6 5.6E-05 41.3 2.8 18 150-167 33-50 (242)
498 PRK11264 putative amino-acid A 73.9 2.6 5.6E-05 41.4 2.8 18 150-167 34-51 (250)
499 PRK08727 hypothetical protein; 73.9 9.4 0.0002 37.7 6.7 17 151-167 47-63 (233)
500 PF00448 SRP54: SRP54-type pro 73.9 2.4 5.2E-05 41.2 2.5 17 151-167 7-23 (196)
No 1
>KOG3812|consensus
Probab=100.00 E-value=6.5e-77 Score=598.25 Aligned_cols=252 Identities=70% Similarity=1.048 Sum_probs=220.6
Q ss_pred cCCCCCCCcCC--CCccchhhhHHHhHHHHHHHHHHHhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEE
Q psy6613 4 GSAESNFSQPS--SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHI 81 (510)
Q Consensus 4 ~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~a~~~L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V 81 (510)
||||||||||+ +|++||+|+|.+|+++|+||+.|||+|+.||++|.|||+.+|+|.-|+++|+++.+++|+..|+|||
T Consensus 13 ~sads~tS~pp~~sdv~leedre~~r~e~e~qA~~qLe~aK~KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHI 92 (475)
T KOG3812|consen 13 GSADSYTSRPPSDSDVSLEEDREARRREAERQALRQLERAKRKPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHI 92 (475)
T ss_pred ccccccccCCchhhhhhhhhhHHHHHHHHHHHHHHHHHhcccCCceEEEEeccccCCccCCCCCCCCceeeeccccceee
Confidence 79999999995 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCceEEEEccCCCceeeecChhHHHHHHHHhhhccCCCcccccCCCCCCCCCCCCCCCCCCCeEEecCcCChHHH
Q psy6613 82 KEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADISLA 161 (510)
Q Consensus 82 ~~~~d~~WWqar~v~~~~~~GlIPS~~~~Errr~~~~~kk~~~l~~sk~~s~~~~~~~~~d~Ps~~RpI~GPsGvGKsTL 161 (510)
.++++++||+||.|.++++.|||||+.++|..+++++++ ++++ .|. + . +|+.|
T Consensus 93 keKynnDWWIGRlVkeg~e~gFiPsp~rLen~r~~~e~~-------~~~~--~n~--------s---s-l~~vg------ 145 (475)
T KOG3812|consen 93 KEKYNNDWWIGRLVKEGCEIGFIPSPVRLENIRLQQEQS-------SKSS--GNS--------S---S-LGDVG------ 145 (475)
T ss_pred hhhcccchhHHHHhhcCCccccccchHHHHHHHhhhhhh-------cccC--CCc--------c---c-cCCcc------
Confidence 999999999999999999999999999999999887761 1110 000 0 0 01111
Q ss_pred HHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHH
Q psy6613 162 KRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRL 241 (510)
Q Consensus 162 ~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~r 241 (510)
||
T Consensus 146 ------------------~r------------------------------------------------------------ 147 (475)
T KOG3812|consen 146 ------------------SR------------------------------------------------------------ 147 (475)
T ss_pred ------------------cC------------------------------------------------------------
Confidence 11
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccccCCcc
Q psy6613 242 IKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQS 321 (510)
Q Consensus 242 Lr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~~~~~~~~~~~~~~~ 321 (510)
T Consensus 148 -------------------------------------------------------------------------------- 147 (475)
T KOG3812|consen 148 -------------------------------------------------------------------------------- 147 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCcccCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCCccCCCChhhhhhhccc
Q psy6613 322 VVIPPSPSMGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFK 401 (510)
Q Consensus 322 ~~~~~s~~~~s~~s~~s~ps~~~s~~~~~~~~~~~~e~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (510)
.+||++..+.|.- -
T Consensus 148 -----------------------------------------------------------------~stpp~ta~~kd~-~ 161 (475)
T KOG3812|consen 148 -----------------------------------------------------------------RSTPPSTADQKDK-S 161 (475)
T ss_pred -----------------------------------------------------------------CCCCCChhhhhhh-h
Confidence 0122222222210 1
Q ss_pred ccCCCCCccccCCCcceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEEEEEEecchhhHHhhccCCccccccccccCC
Q psy6613 402 KQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNS 481 (510)
Q Consensus 402 ~~~~~~~y~~~p~~rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 481 (510)
++|++||||||||||||||||||||||||||||||||||||||||+|||+||||||||||||||++|||+|++||||+|+
T Consensus 162 ~~E~~pPYdVVPSmRPvVLvGPsLkgyevTdmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~ 241 (475)
T KOG3812|consen 162 ITEHVPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNT 241 (475)
T ss_pred hcccCCccccCCCCCceEEecCccccccHHHHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccceeeeeeccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHhhcccccc
Q psy6613 482 RSSVLTEVQTEIERVYELASTLQVYY 507 (510)
Q Consensus 482 ~~~~~~~~~~e~~~i~~~~~~~~l~~ 507 (510)
|+| +||||+||||||||||+||||+
T Consensus 242 Rss-laevqsEiErIfelarsLqLvv 266 (475)
T KOG3812|consen 242 RSS-LAEVQSEIERIFELARSLQLVV 266 (475)
T ss_pred hhh-HHHHHHHHHHHHHHHhhceEEE
Confidence 988 9999999999999999999986
No 2
>KOG0609|consensus
Probab=100.00 E-value=3.8e-55 Score=462.83 Aligned_cols=295 Identities=20% Similarity=0.267 Sum_probs=246.3
Q ss_pred cCCCCCCCcCCCCccchhhhHHHhHHHHHHHHHHHhhhcc-------------CC-CeeEEEEeeccCCCCCCCCCCCCc
Q psy6613 4 GSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARA-------------KN-VAFAVRTNVKYDGSIDDDSPVHGY 69 (510)
Q Consensus 4 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~a~~~L~~a~~-------------k~-~~~~VRAlfdY~~~~D~~iPc~e~ 69 (510)
|.++--+.--.+|-++|.|+..+.+..=++.+..|..+.+ .. ...||||+|||||..|+.+||+|+
T Consensus 157 G~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~~~~~~~~~~vra~FdYdP~~D~~IPCkEa 236 (542)
T KOG0609|consen 157 GMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYRPPPQQQVVFVRALFDYDPKEDDLIPCKEA 236 (542)
T ss_pred CcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEcccccCCCceeeeeehhhcCcCcccCCcccchhc
Confidence 4444333333399999999999998888888888887761 11 238999999999999999999999
Q ss_pred cccccCCceEEEEeecCCCceEEEEccC--CCceeeecChhHHHHHHHHhh-------hc-------cCCC----ccccc
Q psy6613 70 AVSFDIHEFLHIKEKYDSNWWIGRLVKE--GSECGFIPSPVKLENLRLQQT-------QA-------RNPK----LYSSK 129 (510)
Q Consensus 70 ~LsF~~GDiL~V~~~~d~~WWqar~v~~--~~~~GlIPS~~~~Errr~~~~-------~k-------k~~~----l~~sk 129 (510)
||+|.+||||+|++++|.+||||+++++ ++.+|+|||+.++|||.+... .+ |+++ +|..+
T Consensus 237 gl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~ 316 (542)
T KOG0609|consen 237 GLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGK 316 (542)
T ss_pred CCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhh
Confidence 9999999999999999999999999984 468999999999999954311 10 1111 12222
Q ss_pred CCCCCCCCCCCCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-------------
Q psy6613 130 TSSTSNLGALSSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS------------- 183 (510)
Q Consensus 130 ~~s~~~~~~~~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p------------- 183 (510)
.+..++..++ |..+|++ +||.|||++.|+++|+. +|++|+++||||||+|
T Consensus 317 ----~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FV 392 (542)
T KOG0609|consen 317 ----HSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFV 392 (542)
T ss_pred ----cchhhhccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceee
Confidence 2333443332 6566765 99999999999999999 9999999999999999
Q ss_pred ----hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHH
Q psy6613 184 ----VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLI 242 (510)
Q Consensus 184 ----Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rL 242 (510)
|+++|+ |++++|+.++++||+||||+.||+ ++.+|+ +|.||||||+||+++.|++.+
T Consensus 393 Sk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqa--lk~lRt~Ef~PyVIFI~pP~~~~~r~~r 470 (542)
T KOG0609|consen 393 SKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQA--LKVLRTAEFKPYVIFIAPPSLEELRALR 470 (542)
T ss_pred ehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHH--hhhhhhhcccceEEEecCCCchhHHHHh
Confidence 666654 999999999999999999999999 999999 999999999999999999998
Q ss_pred HhcCC------CcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy6613 243 KSRGK------SQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQP 307 (510)
Q Consensus 243 r~Rgt------~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~~ 307 (510)
+.-.. -.+++..++| +.++.|++.|+|+||.||+|+|||+||++|+ .++..+..+|+|+|..
T Consensus 471 ~~~~~~~~~~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~---~~iekl~tepqWVPvs 539 (542)
T KOG0609|consen 471 KVAVMSTIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELK---TAIEKLRTEPQWVPVS 539 (542)
T ss_pred hhccccccccccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHH---HHHHHhccCCceeeee
Confidence 76542 2357778888 9999999999999999999999999999999 7888999999999973
No 3
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=253.91 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=127.9
Q ss_pred CCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613 146 PGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------------VLTEVQ----------------T 190 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T 190 (510)
+|+++ +|||||||+||+++|++.. .|.++||||||+| |+++|. |
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 35655 9999999999999999944 8999999999999 555442 9
Q ss_pred cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613 191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ 268 (510)
Q Consensus 191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~ 268 (510)
++..|.+++.+|++||||||+|| ++.+|. ....++|||.|||+++|++||++||+++.+.+.+|| .|..||+..
T Consensus 82 ~~~~ve~~~~~G~~vildId~qG--a~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~-- 157 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQG--ALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHA-- 157 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehHH--HHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999 666666 558899999999999999999999999999999999 888899887
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613 269 EMFDVILDENQLEDACEHIAEYLEA 293 (510)
Q Consensus 269 ~~FD~VIvNDdLd~A~~eL~~ilea 293 (510)
..|||||+|||++.|+.+|+.++.+
T Consensus 158 ~~fdyvivNdd~e~a~~~l~~ii~a 182 (191)
T COG0194 158 DEFDYVIVNDDLEKALEELKSIILA 182 (191)
T ss_pred HhCCEEEECccHHHHHHHHHHHHHH
Confidence 6799999999999999999966544
No 4
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.96 E-value=6.8e-29 Score=233.87 Aligned_cols=145 Identities=23% Similarity=0.317 Sum_probs=129.5
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T 190 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T 190 (510)
+|+| +||||+||+||+++|++ +|+.|.++++||||++ |+..++ |
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 5665 99999999999999999 8889999999999998 443332 9
Q ss_pred cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCC
Q psy6613 191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQE 269 (510)
Q Consensus 191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~ 269 (510)
++++|++++++|++||||++++| +..++. .++|++|||.|||.++|++||+.||.++.+.+.+||..+.++..++ +
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~--~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-~ 158 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQG--VKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-H 158 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHH--HHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-c
Confidence 99999999999999999999999 777776 7899999999999999999999999999999999995566656555 8
Q ss_pred CccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613 270 MFDVILDENQLEDACEHIAEYLEAY 294 (510)
Q Consensus 270 ~FD~VIvNDdLd~A~~eL~~ileai 294 (510)
+||++|+|+|++.|+++|+++|+..
T Consensus 159 ~fd~~I~n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 159 LFDYVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred cCCEEEECcCHHHHHHHHHHHHHhc
Confidence 8999999999999999999888764
No 5
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.95 E-value=4.5e-28 Score=227.56 Aligned_cols=144 Identities=19% Similarity=0.336 Sum_probs=125.5
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T 190 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T 190 (510)
+||| +||+|+||+||.++|++ +|++|.++++||||+| |++++. |
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 5666 99999999999999999 9999999999999998 444332 9
Q ss_pred cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613 191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ 268 (510)
Q Consensus 191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~ 268 (510)
++++|..++++|++||||++++| ++.++. .++|++|||.|||.++|++|++.||.++.+++..|+ .+..+++..
T Consensus 82 ~~~~i~~~~~~gk~~il~~~~~g--~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~-- 157 (183)
T PF00625_consen 82 SKSAIDKVLEEGKHCILDVDPEG--VKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHY-- 157 (183)
T ss_dssp EHHHHHHHHHTTTEEEEEETHHH--HHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGG--
T ss_pred ccchhhHhhhcCCcEEEEccHHH--HHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHh--
Confidence 99999999999999999999999 788777 899999999999999999999999988888888888 444444443
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613 269 EMFDVILDENQLEDACEHIAEYLEAY 294 (510)
Q Consensus 269 ~~FD~VIvNDdLd~A~~eL~~ileai 294 (510)
..||+||+|++++.|+.+|+++|+.+
T Consensus 158 ~~fd~vi~n~~le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 158 NEFDYVIVNDDLEEAVKELKEIIEQE 183 (183)
T ss_dssp GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCCEEEECcCHHHHHHHHHHHHHhC
Confidence 23999999999999999999998764
No 6
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.95 E-value=3.4e-27 Score=224.75 Aligned_cols=141 Identities=12% Similarity=0.155 Sum_probs=121.9
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T 190 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T 190 (510)
+++| +||||+||+||+++|++ +|+ +.++++||||+| |++++. |
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 3554 99999999999999999 775 778899999998 555542 9
Q ss_pred cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcC
Q psy6613 191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCP 267 (510)
Q Consensus 191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~ 267 (510)
++++|++++++|++||||+|++| ++.++. ...+ ++|||.|||.++|++||..|+..+.+++.+|| .+..+ ..+
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~g--~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e--~~~ 158 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQG--AKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIE--LDE 158 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHHH--HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--Hhh
Confidence 99999999999999999999999 888887 4454 89999999999999999999999888999999 44444 445
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHH
Q psy6613 268 QEMFDVILDENQLEDACEHIAEYLE 292 (510)
Q Consensus 268 ~~~FD~VIvNDdLd~A~~eL~~ile 292 (510)
.+.||+||+|+|+++|+.+|..+|.
T Consensus 159 ~~~~D~vI~N~dle~a~~ql~~ii~ 183 (186)
T PRK14737 159 ANEFDYKIINDDLEDAIADLEAIIC 183 (186)
T ss_pred hccCCEEEECcCHHHHHHHHHHHHh
Confidence 6899999999999999999996663
No 7
>PLN02772 guanylate kinase
Probab=99.94 E-value=1.2e-26 Score=242.95 Aligned_cols=144 Identities=20% Similarity=0.289 Sum_probs=129.0
Q ss_pred CCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ---------------- 189 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~---------------- 189 (510)
.+++| +|||||||+||+++|++ +|..|.++++||||+| |+.++.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 55666 89999999999999999 8888999999999999 444332
Q ss_pred ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHh-c
Q psy6613 190 TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQ-C 266 (510)
Q Consensus 190 TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq-~ 266 (510)
|++++|+.++++|++||||+|++| ++.++. .+.+++|||.|||+++|++||+.||+++.+.+.+|| .+..+|++ .
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qG--ar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~ 291 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQG--ARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGK 291 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHH--HHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999 777776 678999999999999999999999999999999999 66678875 4
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHH
Q psy6613 267 PQEMFDVILDENQLEDACEHIAEYL 291 (510)
Q Consensus 267 ~~~~FD~VIvNDdLd~A~~eL~~il 291 (510)
++++||++|+||||+.|+++|..+|
T Consensus 292 ~~~~fD~vIvNDdLe~A~~~L~~iL 316 (398)
T PLN02772 292 SSGIFDHILYNDNLEECYKNLKKLL 316 (398)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHH
Confidence 5789999999999999999999655
No 8
>KOG0708|consensus
Probab=99.94 E-value=9.2e-27 Score=239.57 Aligned_cols=248 Identities=17% Similarity=0.216 Sum_probs=193.6
Q ss_pred CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCC---ceeeecChhHHHHHHHHhhh---
Q psy6613 46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS---ECGFIPSPVKLENLRLQQTQ--- 119 (510)
Q Consensus 46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~~--- 119 (510)
...||+++|||+...+ .|-...+++|..||++++.+..+..||++|++..++ ..|++|+....++|......
T Consensus 65 ~~~~v~~~~d~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~~ 142 (359)
T KOG0708|consen 65 RCLYVDALFDYDLDRG--SPGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRDS 142 (359)
T ss_pred ceeEeeccccccccCC--CCCcchhhhhhhhhhhhccccccHHHHHhhccCCCccccccccccccccccccccccccccc
Confidence 3679999999999988 677788999999999999999999999999986544 68999999999887322111
Q ss_pred ---ccCCCcccccCCCCCCCCCC--CCC---C---------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCC
Q psy6613 120 ---ARNPKLYSSKTSSTSNLGAL--SSD---A---------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSN 179 (510)
Q Consensus 120 ---kk~~~l~~sk~~s~~~~~~~--~~d---~---------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshT 179 (510)
++....+.++.++....... ..+ . +...||| +||. .++ |.++|+. +|++|..|++||
T Consensus 143 f~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~-~d~--l~~~Lv~e~~~kF~~C~~~t 219 (359)
T KOG0708|consen 143 FNSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPL-LDR--LLDNLVNEFPDKFKSCLPET 219 (359)
T ss_pred ccccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccch-HHH--HHHHHHHhhhccccccchhh
Confidence 01111111222110000000 000 0 3466776 7887 454 8899999 899999999999
Q ss_pred Cchh---hhhhhc----------------ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHH
Q psy6613 180 SRSS---VLTEVQ----------------TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQ 239 (510)
Q Consensus 180 TR~p---Fe~~I~----------------TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~ 239 (510)
||+. |++.++ |++.+|++++++|+|||||+...| ++.++. .++||+|||+|-|.+.++
T Consensus 220 ~~~~~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~a--i~rLq~~~IyPIvIfIr~ks~~~i~ 297 (359)
T KOG0708|consen 220 LRPSREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDA--IRRLQRNQIYPIVIFIRVKSKKQIK 297 (359)
T ss_pred hcccHHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcch--HHHHHhcceeceEEEEEechHHHHH
Confidence 9988 665543 999999999999999999999998 888877 899999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613 240 RLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQ 306 (510)
Q Consensus 240 ~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~p~ 306 (510)
.+...+ +.++..+.++++.++|+.++.+|..||.-++++..|.+++ ..|+....+.+|+|.
T Consensus 298 e~~~~~---t~~~ake~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk---~~I~~Eq~k~iWVp~ 358 (359)
T KOG0708|consen 298 ERNLKI---TGEQAKELLERARKLEQELDRYFTLVVQGGSLEELLSQVK---DIIEDEQKKVIWVPA 358 (359)
T ss_pred HHhccc---chHHHHHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHH---HHHHHhhCCeEeeeC
Confidence 886332 2334333449999999999999999999999999999999 777888999999985
No 9
>KOG0707|consensus
Probab=99.88 E-value=1.9e-22 Score=197.47 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=129.8
Q ss_pred CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc--------------
Q psy6613 144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ-------------- 189 (510)
Q Consensus 144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~-------------- 189 (510)
|...+++ +||+|+||+|+.++|++ +|..|+++|+||||.| |+.++.
T Consensus 34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~ 113 (231)
T KOG0707|consen 34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNK 113 (231)
T ss_pred CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhccc
Confidence 4444544 99999999999999999 8988999999999999 444432
Q ss_pred --ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHh
Q psy6613 190 --TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-AAEKLAQ 265 (510)
Q Consensus 190 --TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-aa~eLEq 265 (510)
|++++|+++...|+.|++|||.+| .+.++. .+++++|||.||+...+++||+.||++..+++.+|+. +-.+++.
T Consensus 114 yGtsi~av~~~~~~gk~~ildId~qg--~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~ 191 (231)
T KOG0707|consen 114 YGTSIAAVQRLMLSGKVCILDIDLQG--VQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEI 191 (231)
T ss_pred CCchHHHHHHHHhcCCcceeehhhcC--ceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhcc
Confidence 899999999999999999999999 777777 8999999999999999999999999999999999995 4445543
Q ss_pred -cCCCCccEEEeC-CCHHHHHHHHHHHHHHH
Q psy6613 266 -CPQEMFDVILDE-NQLEDACEHIAEYLEAY 294 (510)
Q Consensus 266 -~~~~~FD~VIvN-DdLd~A~~eL~~ileai 294 (510)
..+..||++|+| +++++|+.+|..++-.=
T Consensus 192 ~~~~g~~d~~~~ns~~lee~~kel~~~~~~~ 222 (231)
T KOG0707|consen 192 LENSGSFDLVIVNSDRLEEAYKELEIFISSD 222 (231)
T ss_pred ccCCccccceecCCCchhhhhhhhhhhhhHH
Confidence 456789999999 99999999999776543
No 10
>KOG3812|consensus
Probab=99.88 E-value=4.5e-22 Score=202.05 Aligned_cols=161 Identities=80% Similarity=1.169 Sum_probs=152.2
Q ss_pred CCCCeEEecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCC
Q psy6613 145 SPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLS 224 (510)
Q Consensus 145 s~~RpI~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~ 224 (510)
+.||+.+....++.+..++.++++|.+..+.....||.. .++++++++.|++++++-+.|+||+|..+||.++.++.|.
T Consensus 206 F~grisitrVtaDIslakrS~lnnp~k~~~~eRsn~Rss-laevqsEiErIfelarsLqLvvlDadtInhPaql~ktsLa 284 (475)
T KOG3812|consen 206 FDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSS-LAEVQSEIERIFELARSLQLVVLDADTINHPAQLAKTSLA 284 (475)
T ss_pred cCCceeEEEEeechhhhhhhhccCccceeeeeeccchhh-HHHHHHHHHHHHHHHhhceEEEecCCcCCCHHHhccCCCc
Confidence 467887777788888888888889999999999999976 7888999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613 225 PCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAP 304 (510)
Q Consensus 225 PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~h~p~~~ 304 (510)
||+|||+..|.++|.+++++||+.+.++++.+|.++++++||.+..||+||..+.|++||++|.+|||+||+++|+|+..
T Consensus 285 PI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~~e~FdvildENqLedAcehla~yLEaYw~AtH~p~~~ 364 (475)
T KOG3812|consen 285 PIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEHLAEYLEAYWRATHPPSSD 364 (475)
T ss_pred ceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q psy6613 305 PQ 306 (510)
Q Consensus 305 p~ 306 (510)
|+
T Consensus 365 p~ 366 (475)
T KOG3812|consen 365 PP 366 (475)
T ss_pred cc
Confidence 84
No 11
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.86 E-value=9e-21 Score=182.49 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=124.1
Q ss_pred CCCCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------------hhhhhc---------------
Q psy6613 144 PSPGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------------VLTEVQ--------------- 189 (510)
Q Consensus 144 Ps~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------------Fe~~I~--------------- 189 (510)
|..+++| +||||+||+||++.|.+....|.++++||||++ |+.++.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 6666765 899999999999999883337999999999986 433331
Q ss_pred -ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhc
Q psy6613 190 -TEIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQC 266 (510)
Q Consensus 190 -TslesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~ 266 (510)
|++++|..++++|++||||++++| +..++. ..+.++||+.||+.++|.+|++.|+.++.+++.+|+ .+..++...
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~~g--~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~ 167 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDVQG--AASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL 167 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCHHH--HHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 777776 567799999999999999999999988888888999 555667655
Q ss_pred CCCCccEEEeC--CCHHHHHHHHHHHHHHH
Q psy6613 267 PQEMFDVILDE--NQLEDACEHIAEYLEAY 294 (510)
Q Consensus 267 ~~~~FD~VIvN--DdLd~A~~eL~~ileai 294 (510)
+.||++++| ++++++++++.++|..-
T Consensus 168 --~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 168 --PEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred --cCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 458999998 58999999999887654
No 12
>KOG3580|consensus
Probab=99.84 E-value=4.5e-20 Score=197.41 Aligned_cols=274 Identities=16% Similarity=0.197 Sum_probs=194.1
Q ss_pred CCccchhhhHHHhHHHHHHH-HHHHhhhc---------------------cCCCeeEEEEeeccCCCCCCCCCCCCcccc
Q psy6613 15 SDLSLDEEKETLRREKERQA-LSQLEKAR---------------------AKNVAFAVRTNVKYDGSIDDDSPVHGYAVS 72 (510)
Q Consensus 15 ~d~~~~~~~~~~~~~~~~~a-~~~L~~a~---------------------~k~~~~~VRAlfdY~~~~D~~iPc~e~~Ls 72 (510)
+|+||.-|.-..+|-..++| +.-|+-++ .-..+||+|++|.|++... .+|+
T Consensus 450 GDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P-------~gL~ 522 (1027)
T KOG3580|consen 450 GDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETP-------QGLA 522 (1027)
T ss_pred cceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCC-------cccc
Confidence 89999988877777663333 33333232 4457999999999998764 4899
Q ss_pred ccCCceEEEEeec-CC--CceEEEEccCCC---ceeeecChhHHHHHHHHhh-hccC-----------CCc-ccccCC--
Q psy6613 73 FDIHEFLHIKEKY-DS--NWWIGRLVKEGS---ECGFIPSPVKLENLRLQQT-QARN-----------PKL-YSSKTS-- 131 (510)
Q Consensus 73 F~~GDiL~V~~~~-d~--~WWqar~v~~~~---~~GlIPS~~~~Errr~~~~-~kk~-----------~~l-~~sk~~-- 131 (510)
|.+||||+|+++. |+ +-|.|-++|.+. +.|+||++.+.|+....+. +++. ..+ ..+|..
T Consensus 523 FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~Kknlr 602 (1027)
T KOG3580|consen 523 FTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLR 602 (1027)
T ss_pred ccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhh
Confidence 9999999999984 32 456666655432 6899999999999954322 2110 000 111111
Q ss_pred -CCCCCCCC--CCCC----------CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeec--CCCchhhhhh-hcccH
Q psy6613 132 -STSNLGAL--SSDA----------PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMER--SNSRSSVLTE-VQTEI 192 (510)
Q Consensus 132 -s~~~~~~~--~~d~----------Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVs--hTTR~pFe~~-I~Tsl 192 (510)
+...+.+. ...+ .+|.||| +||.. .-++++|.+ .|+.|.++-+ .+.-+ +.. -...+
T Consensus 603 kSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiA---DiAmeKLa~E~PD~fqiAkteprdag~--~~stg~irL 677 (1027)
T KOG3580|consen 603 KSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIA---DIAMEKLANELPDWFQIAKTEPRDAGS--EKSTGVIRL 677 (1027)
T ss_pred hhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHH---HHHHHHHhhhCcchhhhhccccccCCc--ccccceEEe
Confidence 11122111 1122 3577877 89984 456788998 9999987643 22111 100 11678
Q ss_pred HHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCC
Q psy6613 193 ERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEM 270 (510)
Q Consensus 193 esI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~ 270 (510)
.+|+.|+++.|+++||+.|.+ +..|+. ..+|||||+.|-|..-++.++....-.+. ...++| +.+++|...+.|+
T Consensus 678 ~TvrqiieqDKHALLDVTP~A--vdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr-~SsRkLy~~a~KL~K~~~HL 754 (1027)
T KOG3580|consen 678 NTVRQIIEQDKHALLDVTPKA--VDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSR-KSSRKLYDQANKLKKTCAHL 754 (1027)
T ss_pred hhhHHHHhcccchhhccCHHH--HhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccc-hhHHHHHHHHHHHhhhchhh
Confidence 999999999999999999998 999988 89999999999998888877666544333 345677 9999999999999
Q ss_pred ccEEE-eCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613 271 FDVIL-DENQLEDACEHIAEYLEAYWRATHPPAAPPQ 306 (510)
Q Consensus 271 FD~VI-vNDdLd~A~~eL~~ileai~~a~h~p~~~p~ 306 (510)
|+.+| .|.--|.+|..|+ +.|-+....++|+.-
T Consensus 755 FTaTInLNs~nD~Wyg~LK---~~iq~QQ~~~vWvsE 788 (1027)
T KOG3580|consen 755 FTATINLNSANDSWYGSLK---DTIQHQQGEAVWVSE 788 (1027)
T ss_pred eEeeeccCCCChhHHHHHH---HHHHHhcCceeEeec
Confidence 99999 5667788899999 566678899999977
No 13
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.83 E-value=8.7e-20 Score=169.33 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=115.9
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHHH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERVY 196 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI~ 196 (510)
+||+|+|||||.+.|.. ++. +.+++++|||+| |...+. ++.+.|.
T Consensus 7 ~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~ 85 (180)
T TIGR03263 7 SGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSPVE 85 (180)
T ss_pred ECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcHHHHH
Confidence 99999999999999999 664 778899999988 222111 6789999
Q ss_pred HHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEE
Q psy6613 197 ELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVI 274 (510)
Q Consensus 197 ~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~V 274 (510)
.++.+|++||+|+++.| .+.++. ...++.||+.||+.+++++|++.|+.++.+.+.+|| .+..+++ +.+.||++
T Consensus 86 ~~~~~g~~vi~d~~~~~--~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~--~~~~~d~~ 161 (180)
T TIGR03263 86 EALAAGKDVLLEIDVQG--ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIA--HADEFDYV 161 (180)
T ss_pred HHHHCCCeEEEECCHHH--HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh--ccccCcEE
Confidence 99999999999999998 776666 558899999999999999999999988888899999 4444444 35789999
Q ss_pred EeCCCHHHHHHHHHHHHH
Q psy6613 275 LDENQLEDACEHIAEYLE 292 (510)
Q Consensus 275 IvNDdLd~A~~eL~~ile 292 (510)
|+|+|+++++.+|++++.
T Consensus 162 i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 162 IVNDDLEKAVEELKSIIL 179 (180)
T ss_pred EECCCHHHHHHHHHHHHh
Confidence 999999999999997664
No 14
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.79 E-value=1.8e-18 Score=163.87 Aligned_cols=143 Identities=19% Similarity=0.276 Sum_probs=120.0
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------c
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------T 190 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------T 190 (510)
+++| +||+|+|||||.+.|.. .| .|.+.+++|||+| |.+.+. +
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 4554 99999999999999998 66 7999999999987 212111 5
Q ss_pred cHHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCC
Q psy6613 191 EIERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQ 268 (510)
Q Consensus 191 slesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~ 268 (510)
+...|..++..|++||+|++++| ...++. ...+++||+.||+.+++++|+..|+.++.+.+.+|+ .+..+++. .
T Consensus 84 ~~~~i~~~l~~g~~vi~dl~~~g--~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--~ 159 (205)
T PRK00300 84 PRSPVEEALAAGKDVLLEIDWQG--ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAH--A 159 (205)
T ss_pred cHHHHHHHHHcCCeEEEeCCHHH--HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--H
Confidence 68899999999999999999998 666666 458899999999999999999999988888888898 44444443 3
Q ss_pred CCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613 269 EMFDVILDENQLEDACEHIAEYLEAY 294 (510)
Q Consensus 269 ~~FD~VIvNDdLd~A~~eL~~ileai 294 (510)
+.||+||+|+++++++.+|..+++.-
T Consensus 160 ~~~d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 160 SEYDYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred HhCCEEEECCCHHHHHHHHHHHHHHH
Confidence 77999999999999999999888654
No 15
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=99.70 E-value=4.6e-18 Score=123.75 Aligned_cols=41 Identities=73% Similarity=1.034 Sum_probs=34.3
Q ss_pred CCcccCCCCCC-CCCChhHhHHHHHHHHHHHHHHHHHHhccC
Q psy6613 331 GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARVT 371 (510)
Q Consensus 331 ~s~~s~~s~ps-~~~s~~~~~~~~~~~~e~~a~~~l~~a~~~ 371 (510)
|||+||+|||| ||||||||||++|||+|+||+.||||||+|
T Consensus 1 GSaDS~~S~pSdsDlsldedrEalRre~erqA~~QLekAk~K 42 (42)
T PF12052_consen 1 GSADSNYSRPSDSDLSLDEDREALRREAERQALAQLEKAKTK 42 (42)
T ss_dssp -SSEE--SSS---EE-CHCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999 999999999999999999999999999986
No 16
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.67 E-value=2.1e-16 Score=143.44 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=87.9
Q ss_pred EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----------------hhhhhc----------------ccHHHH
Q psy6613 150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEIERV 195 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----------------Fe~~I~----------------TslesI 195 (510)
|+||+|+||+||.+.|.+ ++..|...++||||+| |.+++. +..+.|
T Consensus 4 i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~~~i 83 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSKAAV 83 (137)
T ss_pred EECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcHHHH
Confidence 389999999999999999 7888999999999988 222221 789999
Q ss_pred HHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEE
Q psy6613 196 YELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVI 274 (510)
Q Consensus 196 ~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~V 274 (510)
.+++++|++||||++.+| ++.++. .+++++|||.|| |+|
T Consensus 84 ~~~~~~g~~~il~~~~~~--~~~l~~~~~~~~~I~i~~~--------------------------------------~~~ 123 (137)
T cd00071 84 EEALAEGKIVILEIDVQG--ARQVKKSYPDAVSIFILPP--------------------------------------DYV 123 (137)
T ss_pred HHHHhCCCeEEEEecHHH--HHHHHHcCCCeEEEEEECC--------------------------------------CeE
Confidence 999999999999999999 888887 789999999999 999
Q ss_pred EeCCCHHHHHHHH
Q psy6613 275 LDENQLEDACEHI 287 (510)
Q Consensus 275 IvNDdLd~A~~eL 287 (510)
|+|||+|+|+++|
T Consensus 124 ~~~~~~~~~~~~~ 136 (137)
T cd00071 124 IVNDDLEKAYEEL 136 (137)
T ss_pred EeCCCHHHHHHhh
Confidence 9999999999987
No 17
>PF12052 VGCC_beta4Aa_N: Voltage gated calcium channel subunit beta domain 4Aa N terminal; InterPro: IPR000584 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. Co-expression of beta subunit mRNA with alpha-1 subunit mRNA in xenopus oocytes produces increased calcium currents, which are accompanied by a shift in the voltage-dependence of activation to more negative membrane potentials. Conversely, microinjection of antisense oligonucleotides to beta subunit mRNA produces decreased calcium currents and shifts voltage-dependent activation to more positive membrane potentials. There are four distinct beta subunits: beta-1, beta-2, beta-3 and beta-4; and the magnitude of the shift in the voltage-dependence of activation of change to membrane potentials varies with the particular subtype []. This entry represents the beta subunits found in L-type voltage-gated calcium channels.; GO: 0005245 voltage-gated calcium channel activity, 0006816 calcium ion transport, 0051925 regulation of calcium ion transport via voltage-gated calcium channel activity; PDB: 1T0J_A 1T0H_A 2D46_A 1T3S_A 1T3L_A 4DEY_A 4DEX_A 1VYT_B 1VYU_A.
Probab=99.43 E-value=6.7e-14 Score=102.16 Aligned_cols=41 Identities=76% Similarity=1.064 Sum_probs=34.0
Q ss_pred cCCCCCCCcCC-CCccchhhhHHHhHHHHHHHHHHHhhhccC
Q psy6613 4 GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAK 44 (510)
Q Consensus 4 ~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~a~~~L~~a~~k 44 (510)
||||||+|||| +||+|++|+|++|+|+|+||+.||++|+.|
T Consensus 1 GSaDS~~S~pSdsDlsldedrEalRre~erqA~~QLekAk~K 42 (42)
T PF12052_consen 1 GSADSNYSRPSDSDLSLDEDREALRREAERQALAQLEKAKTK 42 (42)
T ss_dssp -SSEE--SSS---EE-CHCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcccCCCCCccccchhhhhHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999 999999999999999999999999999875
No 18
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.34 E-value=2.2e-11 Score=115.06 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=94.9
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------------hhhhhc----------------ccHHHHHHHH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------------VLTEVQ----------------TEIERVYELA 199 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------------Fe~~I~----------------TslesI~~vi 199 (510)
+||+|+|||||.+.|.. .+..|....+.+||++ |..++. |+. +|.+.+
T Consensus 8 ~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~-~~~~~l 86 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI-EIDLWL 86 (186)
T ss_pred ECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-HHHHHH
Confidence 99999999999999987 4446778888888875 111211 777 599999
Q ss_pred HcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC
Q psy6613 200 STLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN 278 (510)
Q Consensus 200 ~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND 278 (510)
+.|+.||++...+. ...++. ...+++||+.++|.+++.+|+..|+..+.+++..||.... . | ..+|++|+|+
T Consensus 87 ~~g~~VI~~G~~~~--~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~-~---~-~~ad~~vi~~ 159 (186)
T PRK10078 87 HAGFDVLVNGSRAH--LPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARAA-R---Y-QPQDCHTLNN 159 (186)
T ss_pred hCCCEEEEeChHHH--HHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhh-h---h-ccCCEEEEeC
Confidence 99999998655433 333333 3356666677788999999999888777777888883221 1 1 2478666665
Q ss_pred C--HHHHHHHHHHHH
Q psy6613 279 Q--LEDACEHIAEYL 291 (510)
Q Consensus 279 d--Ld~A~~eL~~il 291 (510)
+ ++++++++..++
T Consensus 160 ~~s~ee~~~~i~~~l 174 (186)
T PRK10078 160 DGSLRQSVDTLLTLL 174 (186)
T ss_pred CCCHHHHHHHHHHHH
Confidence 4 899999888554
No 19
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.27 E-value=1.1e-10 Score=108.77 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=95.9
Q ss_pred EecCcCChHHHHHHHhc-CCC--CceeeecCCCchh--------------hhhhhc----------------ccHHHHHH
Q psy6613 151 ITRVTADISLAKRSLMS-NPS--KRAIMERSNSRSS--------------VLTEVQ----------------TEIERVYE 197 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~--~F~~sVshTTR~p--------------Fe~~I~----------------TslesI~~ 197 (510)
+||+|+||||+.+.|.. .+. .+.+.+++|||+. |..++. ++. .+..
T Consensus 7 ~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~i~~ 85 (179)
T TIGR02322 7 VGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA-EIDQ 85 (179)
T ss_pred ECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH-HHHH
Confidence 99999999999999877 432 3567789999986 222110 455 5788
Q ss_pred HHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEE-E
Q psy6613 198 LASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVI-L 275 (510)
Q Consensus 198 vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~V-I 275 (510)
.+.+|+.||+|.+... ....+. ....++||+. ++.+++.+|++.|+....+.+..+|..... ... ..+|++ |
T Consensus 86 ~~~~g~~vv~~g~~~~--~~~~~~~~~~~~~i~l~-~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~-~~~--~~~~~~vi 159 (179)
T TIGR02322 86 WLEAGDVVVVNGSRAV--LPEARQRYPNLLVVNIT-ASPDVLAQRLAARGRESREEIEERLARSAR-FAA--APADVTTI 159 (179)
T ss_pred HHhcCCEEEEECCHHH--HHHHHHHCCCcEEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHHhh-ccc--ccCCEEEE
Confidence 8899999999998655 444444 3355788887 578999999999987777777777732221 111 457888 4
Q ss_pred eCC-CHHHHHHHHHHHH
Q psy6613 276 DEN-QLEDACEHIAEYL 291 (510)
Q Consensus 276 vND-dLd~A~~eL~~il 291 (510)
+|+ ++++++.++.+++
T Consensus 160 ~~~~~~ee~~~~i~~~l 176 (179)
T TIGR02322 160 DNSGSLEVAGETLLRLL 176 (179)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 454 7999999998655
No 20
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.10 E-value=1.1e-10 Score=88.12 Aligned_cols=48 Identities=29% Similarity=0.579 Sum_probs=42.8
Q ss_pred EEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecC
Q psy6613 51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106 (510)
Q Consensus 51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS 106 (510)
||+|||.+..++ +|+|++||+|+|+++.+.+||.++..++ +..|+||+
T Consensus 1 ~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPD-------ELSFKKGDIIEVLEKSDDGWWKVRNEST-GKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTT-------BSEB-TTEEEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred CCCeeeCCCCCC-------EEeEECCCEEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence 699999999875 6999999999999999999999999754 79999996
No 21
>PRK04040 adenylate kinase; Provisional
Probab=99.03 E-value=2.7e-09 Score=102.20 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=88.4
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeec-------------CCCchhhhh-------hhc-ccHHHHHHHHHcCCeEEEE
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMER-------------SNSRSSVLT-------EVQ-TEIERVYELASTLQLVVLD 208 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVs-------------hTTR~pFe~-------~I~-TslesI~~vi~sGKi~ILD 208 (510)
.|++|+||||+.+.|.+ .+..+.+.-. +.+|..|.. .++ .-.+.|.+. ..++.+|+|
T Consensus 8 ~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~-~~~~~~~~~ 86 (188)
T PRK04040 8 TGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEM-AGEGPVIVD 86 (188)
T ss_pred EeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHh-hcCCCEEEe
Confidence 89999999999999987 5422332111 122222110 000 222333332 356779999
Q ss_pred ecc---------CCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHHHHH-HHHH--hcCCCCc
Q psy6613 209 CDT---------INHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQMVAA-EKLA--QCPQEMF 271 (510)
Q Consensus 209 ID~---------qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL~aa-~eLE--q~~~~~F 271 (510)
.+. .|.+..+++. ....+++|..||+ +.|++|++. |+.++.+.+..++..+ .+.. ..+.+.|
T Consensus 87 ~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~ 165 (188)
T PRK04040 87 THATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGAT 165 (188)
T ss_pred eeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 864 2334455554 4455666666666 889999864 8888888888888333 3322 2345679
Q ss_pred cEEEeCCC--HHHHHHHHHHHH
Q psy6613 272 DVILDENQ--LEDACEHIAEYL 291 (510)
Q Consensus 272 D~VIvNDd--Ld~A~~eL~~il 291 (510)
+++|+|+| ++.|+++|.++|
T Consensus 166 ~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 166 VKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred EEEEECCCCCHHHHHHHHHHHh
Confidence 99999999 999999999765
No 22
>PRK08356 hypothetical protein; Provisional
Probab=98.96 E-value=1.5e-08 Score=96.60 Aligned_cols=136 Identities=12% Similarity=0.151 Sum_probs=81.2
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------------hhhhhc----------------ccH---HH
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------------VLTEVQ----------------TEI---ER 194 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------------Fe~~I~----------------Tsl---es 194 (510)
+||+|+||+|+.+.|.++ .|. .+++++|.+ |+.++. |++ ..
T Consensus 11 ~G~~gsGK~t~a~~l~~~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~~~~ 87 (195)
T PRK08356 11 VGKIAAGKTTVAKFFEEK--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILIRLA 87 (195)
T ss_pred ECCCCCCHHHHHHHHHHC--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHHHHH
Confidence 999999999999999432 465 788998643 111110 331 22
Q ss_pred HHHHHHcCCeEEEEeccCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCCCc-----HHHHHHHH-HHHHHHHh-
Q psy6613 195 VYELASTLQLVVLDCDTINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGKSQ-----TRHLNVQM-VAAEKLAQ- 265 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~-----~e~i~kRL-~aa~eLEq- 265 (510)
+..+ +.+..+++| .... ....+. ....++|||.+|. +++.+|++.|+.+. +.+..+++ .+..++..
T Consensus 88 ~~~~-~~~~~ivid-G~r~--~~q~~~l~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~~~ 162 (195)
T PRK08356 88 VDKK-RNCKNIAID-GVRS--RGEVEAIKRMGGKVIYVEAKP-EIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLYHT 162 (195)
T ss_pred HHHh-ccCCeEEEc-CcCC--HHHHHHHHhcCCEEEEEECCH-HHHHHHHHhcCCccccccccHHHHHHHHHHHHHhhhh
Confidence 2222 222333333 2222 111111 2345889998874 88999999888753 22333555 33333322
Q ss_pred -cCCCCccEEEeC-CCHHHHHHHHHHHHHHH
Q psy6613 266 -CPQEMFDVILDE-NQLEDACEHIAEYLEAY 294 (510)
Q Consensus 266 -~~~~~FD~VIvN-DdLd~A~~eL~~ileai 294 (510)
.+...+|+||+| ++++++..+|..++..+
T Consensus 163 ~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 163 TKLKDKADFVIVNEGTLEELRKKVEEILREL 193 (195)
T ss_pred hhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 223679999998 69999999999777544
No 23
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=98.93 E-value=7.1e-10 Score=85.90 Aligned_cols=52 Identities=27% Similarity=0.515 Sum_probs=43.8
Q ss_pred EEEEeeccCCCCCCCCCCCCccccccCCceEEEE-eecCCCceEEEEccCCCceeeecChhHH
Q psy6613 49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIK-EKYDSNWWIGRLVKEGSECGFIPSPVKL 110 (510)
Q Consensus 49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~-~~~d~~WWqar~v~~~~~~GlIPS~~~~ 110 (510)
|+||++||.+..+. +|+|++||+|+|+ ++.+++||.++. +|..|+||+..+.
T Consensus 1 ~~~a~~d~~~~~~~-------~Ls~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~ 53 (55)
T PF07653_consen 1 YYRAIFDYVAEDPD-------ELSFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVE 53 (55)
T ss_dssp EEEESSSBESSSTT-------B-EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred CEEEeEEECCCCCC-------ceEEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEE
Confidence 68999999997654 5999999999999 888999999998 5789999998654
No 24
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=98.90 E-value=2e-09 Score=82.11 Aligned_cols=47 Identities=28% Similarity=0.601 Sum_probs=40.9
Q ss_pred EeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 52 TNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 52 AlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
|+|+|.+..++ +|+|++||+|.|+.+.+++||.|++ +++.|+||+..
T Consensus 1 Al~~y~~~~~d-------ELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~y 47 (49)
T PF14604_consen 1 ALYDYEAQDPD-------ELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPANY 47 (49)
T ss_dssp ESSCBCSSSTT-------B-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEGGG
T ss_pred CCccCCCCCcC-------EeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECHHh
Confidence 78999999875 5999999999999999999999997 57999999875
No 25
>KOG2199|consensus
Probab=98.84 E-value=8.6e-10 Score=115.15 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=51.2
Q ss_pred CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613 45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL 113 (510)
Q Consensus 45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err 113 (510)
++..-|||||||.+.++. +|+|++||||+|++..|+|||.|++ .+..|+|||+.-.-..
T Consensus 213 ~~~rkVRALYDFeAaE~n-------ELsFkaGdIItVLd~s~~~WWKG~~---~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDN-------ELSFKAGDIITVLDDSDPNWWKGEN---HRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCC-------ccceecCcEEEEcccCCcchhcccc---CCcccccchhhhhhhh
Confidence 344569999999999986 5999999999999999999999998 5689999998765554
No 26
>KOG4792|consensus
Probab=98.77 E-value=3.2e-09 Score=104.28 Aligned_cols=61 Identities=28% Similarity=0.500 Sum_probs=54.8
Q ss_pred eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHHHHH
Q psy6613 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQ 116 (510)
Q Consensus 47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Errr~~ 116 (510)
..||||+|||.|.+.+|+ .|++|+||.|+++.+..||.||+ ..|..|+||.+.-+..+...
T Consensus 124 ~~~vr~~fdF~G~deeDL-------PFkkGeiL~I~~K~eeqWW~Arn--s~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDL-------PFKKGEILRIRDKPEEQWWNARN--SEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hhheeeeeccCCCccccC-------CcccCcEEEEecCcHHHhhhhhc--cCCcccceechHHHhhhhhh
Confidence 679999999999998874 49999999999999999999998 46899999999999887554
No 27
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.71 E-value=2.1e-07 Score=87.12 Aligned_cols=136 Identities=16% Similarity=0.046 Sum_probs=84.7
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCce-eeec---CCCchhh----------------hh----hh-cccHHHHHHH
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRA-IMER---SNSRSSV----------------LT----EV-QTEIERVYEL 198 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~-~sVs---hTTR~pF----------------e~----~I-~TslesI~~v 198 (510)
+++| +||+|+||||+.+.|.+ .+..|. +.+- .+....+ .+ .+ .+..+.+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence 4555 89999999999999987 443221 1110 0111000 00 11 2677889999
Q ss_pred HHcCCeEEEEeccCCchhHhhh----c--CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCcc
Q psy6613 199 ASTLQLVVLDCDTINHPSQLAK----T--NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272 (510)
Q Consensus 199 i~sGKi~ILDID~qg~~lq~lk----s--~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD 272 (510)
+++|+.||+|....+ ...++ . ....++||+.+| .++|.+|+..|+.. ..++...+.-....+..||
T Consensus 82 l~~G~~VIvD~~~~~--~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~~R~~~-----~~~~~~~~~~~~~~~~~~d 153 (175)
T cd00227 82 ARAGANVIADDVFLG--RAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDR-----VPGQARKQARVVHAGVEYD 153 (175)
T ss_pred HhCCCcEEEeeeccC--CHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhcCCc-----cchHHHHHHHHhcCCCcce
Confidence 999999999988763 22222 2 223567888887 58999999998743 1334222111122247789
Q ss_pred EEEeCC--CHHHHHHHHHHH
Q psy6613 273 VILDEN--QLEDACEHIAEY 290 (510)
Q Consensus 273 ~VIvND--dLd~A~~eL~~i 290 (510)
++|.++ +.+++.+++...
T Consensus 154 l~iDts~~s~~e~a~~i~~~ 173 (175)
T cd00227 154 LEVDTTHKTPIECARAIAAR 173 (175)
T ss_pred EEEECCCCCHHHHHHHHHHh
Confidence 999876 588888888744
No 28
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.67 E-value=5.5e-08 Score=72.93 Aligned_cols=53 Identities=30% Similarity=0.525 Sum_probs=45.6
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK 109 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~ 109 (510)
.+++|+|+|.+..+ ..|+|++||++.|++..+++||.+++.+ ++.|+||+...
T Consensus 3 ~~~~a~~~~~~~~~-------~~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v 55 (58)
T smart00326 3 PQVRALYDYTAQDP-------DELSFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSNYV 55 (58)
T ss_pred cEEEEeeeeCCCCC-------CCCCCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchHHE
Confidence 46889999999654 3699999999999999999999999854 78999998753
No 29
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.64 E-value=5.2e-08 Score=72.35 Aligned_cols=51 Identities=35% Similarity=0.662 Sum_probs=44.5
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhH
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVK 109 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~ 109 (510)
++|+|+|.+..++ +|+|.+||++.|++..+++||.+++.+ ++.|+||....
T Consensus 2 ~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v 52 (54)
T cd00174 2 VRALYDYDARDPD-------ELSFKKGDIIEVLEKSDDGWWEGRLLG--GKRGLFPSNYV 52 (54)
T ss_pred EEEEEeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEECC--CCEEEEccccC
Confidence 6899999998874 699999999999999889999999853 28999998754
No 30
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.2e-06 Score=83.20 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=96.3
Q ss_pred CCCeE--EecCcCChHHHHHHHhc-CCC--CceeeecCCCchh--------------hhhh-----hc----------cc
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS-NPS--KRAIMERSNSRSS--------------VLTE-----VQ----------TE 191 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~-~P~--~F~~sVshTTR~p--------------Fe~~-----I~----------Ts 191 (510)
.+++| +||||+||.||+.-+.. .+. +|.++-...||+. |... +. --
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 36766 99999999999987665 433 4888888889987 2211 00 11
Q ss_pred HHHHHHHHHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCC
Q psy6613 192 IERVYELASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEM 270 (510)
Q Consensus 192 lesI~~vi~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~ 270 (510)
=.+|..-+..|.+||....=-. +-..+. +..-.+|.|. -++++|.+||..||.++.+++..||..+..... .-
T Consensus 84 p~eId~wl~~G~vvl~NgSRa~--Lp~arrry~~Llvv~it-a~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~---~~ 157 (192)
T COG3709 84 PAEIDLWLAAGDVVLVNGSRAV--LPQARRRYPQLLVVCIT-ASPEVLAQRLAERGRESREEILARLARAARYTA---GP 157 (192)
T ss_pred chhHHHHHhCCCEEEEeccHhh--hHHHHHhhhcceeEEEe-cCHHHHHHHHHHhccCCHHHHHHHHHhhccccc---CC
Confidence 2458888999999999886533 444444 2233333333 357899999999999999999999933332222 35
Q ss_pred ccEEEeCCC--HHHHHHHHHHHH
Q psy6613 271 FDVILDENQ--LEDACEHIAEYL 291 (510)
Q Consensus 271 FD~VIvNDd--Ld~A~~eL~~il 291 (510)
+|.+-+||+ ++.|.++|..-|
T Consensus 158 ~dv~~idNsG~l~~ag~~ll~~l 180 (192)
T COG3709 158 GDVTTIDNSGELEDAGERLLALL 180 (192)
T ss_pred CCeEEEcCCCcHHHHHHHHHHHH
Confidence 677666544 999999888444
No 31
>KOG1029|consensus
Probab=98.43 E-value=8.8e-08 Score=106.52 Aligned_cols=54 Identities=24% Similarity=0.534 Sum_probs=49.0
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
+-|-|+|||.++.|+ +|+|++||||-|+++++++||+|.+ +|..|||||++-+.
T Consensus 1054 ~qviamYdY~AqndD-------ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSNYV~k 1107 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDD-------ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSNYVQK 1107 (1118)
T ss_pred ceeEEeeccccCCcc-------cccccCCCEEEecCCCChhhhcccc---cCccccCccccccc
Confidence 457899999999987 5999999999999999999999987 57999999998754
No 32
>KOG1118|consensus
Probab=98.42 E-value=8.6e-08 Score=97.76 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=46.4
Q ss_pred eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
..+|||+|||+|..+ .+|.|+.||+|.++++-|+|||.|... |..|+||+++
T Consensus 306 ~p~cralYdFepenE-------gEL~fkeGDlI~l~~QIdenWyeG~~~---g~sG~FPvnY 357 (366)
T KOG1118|consen 306 QPCCRALYDFEPENE-------GELDFKEGDLITLTNQIDENWYEGEKH---GESGMFPVNY 357 (366)
T ss_pred chhheeeeccCCCCC-------CccCcccCceeeehhhcCcchhhheec---CccCccccce
Confidence 347999999999976 579999999999999999999999994 5699999875
No 33
>KOG2070|consensus
Probab=98.39 E-value=3.1e-07 Score=98.37 Aligned_cols=61 Identities=26% Similarity=0.553 Sum_probs=53.6
Q ss_pred cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613 43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL 113 (510)
Q Consensus 43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err 113 (510)
....++.|||-|.|.+...+ +|+|.+||||+|+...+++||.|.. +|+.|||||.+-.|-.
T Consensus 13 ~s~~pLvvrAkf~F~gsNnD-------ELsf~KgDvItVTq~eeGGWWEGTl---ng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 13 NSNNPLVVRAKFNFQGSNND-------ELSFSKGDVITVTQVEEGGWWEGTL---NGRTGWFPSNYVREIK 73 (661)
T ss_pred CCCCceEEEEEeecccCCCc-------eeccccCCEEEEEEeccCcceeccc---cCccCccchHHHHHHh
Confidence 34456789999999999876 5999999999999999999999998 6789999999987754
No 34
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.13 E-value=3.1e-05 Score=73.03 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=80.2
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchh--------hhhhh---------------------cccHHH
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS--------VLTEV---------------------QTEIER 194 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p--------Fe~~I---------------------~Tsles 194 (510)
+++| .||.|+||||+.+.|.+ ... .+.. .++++.| |...+ .+..+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ-QGRD-VVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEV 80 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCc-eeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444 89999999999998876 211 1111 1222222 10000 023344
Q ss_pred HHHHHHcCCeEEEE------eccCCch-------hHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCcH-----H
Q psy6613 195 VYELASTLQLVVLD------CDTINHP-------SQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQT-----R 251 (510)
Q Consensus 195 I~~vi~sGKi~ILD------ID~qg~~-------lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~-----e 251 (510)
|...+.+|+++|+| +..++.. ...+.. .+.| ++||+..|. +++.+|+..|+..+. .
T Consensus 81 i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~-~~~~~Rl~~R~~~~~~~~~~~ 159 (205)
T PRK00698 81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPP-EVGLARIRARGELDRIEQEGL 159 (205)
T ss_pred HHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhcCCcchhhhhhH
Confidence 55566789999999 4443300 011111 1334 567776665 888999998874321 1
Q ss_pred HHHHHH-HHHHHHHhcCCCCccEEEeC--CCHHHHHHHHHHHHHHHH
Q psy6613 252 HLNVQM-VAAEKLAQCPQEMFDVILDE--NQLEDACEHIAEYLEAYW 295 (510)
Q Consensus 252 ~i~kRL-~aa~eLEq~~~~~FD~VIvN--DdLd~A~~eL~~ileai~ 295 (510)
+..+++ ..-..+... ..++++++| .++++..+++..+|..+.
T Consensus 160 ~~~~~~~~~y~~~~~~--~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 160 DFFERVREGYLELAEK--EPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred HHHHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 334455 333444433 234566665 568989999987776653
No 35
>KOG4226|consensus
Probab=98.13 E-value=1.2e-06 Score=88.39 Aligned_cols=64 Identities=25% Similarity=0.475 Sum_probs=52.5
Q ss_pred hhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhHHH
Q psy6613 39 EKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 39 ~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
..+...-+.-.|.|||.|+...|. +|+|++||.|+|+++ .|++||.+|+. .|.+||+|.+..+.
T Consensus 183 ~n~~~s~vl~vVvaLYsFsssnde-------ELsFeKGerleivd~Pe~DPdWwkarn~--~G~vGLVPrNYv~v 248 (379)
T KOG4226|consen 183 SNGQGSRVLHVVVALYSFSSSNDE-------ELSFEKGERLEIVDKPENDPDWWKARNA--RGQVGLVPRNYVVV 248 (379)
T ss_pred cCCCCceEEEEEEEEecccCCChh-------hcccccCceeEeccCCCCCchHHhhccc--CCccceeecceEEE
Confidence 333344455568999999999986 599999999999997 68999999985 57999999887655
No 36
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.85 E-value=0.00016 Score=70.24 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=50.1
Q ss_pred EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-CHHHHHHHHHHHHHHHHH
Q psy6613 227 IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-QLEDACEHIAEYLEAYWR 296 (510)
Q Consensus 227 vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-dLd~A~~eL~~ileai~~ 296 (510)
.|++..++.+++.+|+..|+..+.+.+.+|+ .+....+.. ..+|+||+|+ ++++...++..+++.+..
T Consensus 136 ~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~--~~ad~vI~N~g~~e~l~~~i~~~~~~~~~ 205 (208)
T PRK14731 136 FIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKLI--ERADYVIYNNGTLDELKAQTEQLYQVLLQ 205 (208)
T ss_pred eEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHHH--HhCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 4444577788999999999888888888888 333222322 4689999985 789999999988776643
No 37
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.77 E-value=0.00024 Score=69.00 Aligned_cols=92 Identities=10% Similarity=0.154 Sum_probs=58.6
Q ss_pred HHHHHHcCCeEEEEeccCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcCCCc-----HHHHHH---HH--HHHHH
Q psy6613 195 VYELASTLQLVVLDCDTINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRGKSQ-----TRHLNV---QM--VAAEK 262 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rgt~~-----~e~i~k---RL--~aa~e 262 (510)
+...+..|..+|+|.-... -..+.. ....+++|+..++.+.+++|+..|+... .+.-.+ .+ -+..-
T Consensus 90 a~~~l~~G~sVIvEgv~l~--p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir~i~~~l 167 (197)
T PRK12339 90 IRRALLNGEDLVIESLYFH--PPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYRTIMDYS 167 (197)
T ss_pred HHHHHHcCCCEEEEecCcC--HHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHH
Confidence 5668889999999986655 233332 3346788888899999999999887533 121111 11 11111
Q ss_pred HHhcCCCCcc-EEEeCCCHHHHHHHHHHH
Q psy6613 263 LAQCPQEMFD-VILDENQLEDACEHIAEY 290 (510)
Q Consensus 263 LEq~~~~~FD-~VIvNDdLd~A~~eL~~i 290 (510)
++++ ..++ -||.|+|+|++.+.+.+.
T Consensus 168 ~~~a--~~~~i~~i~~~~~~~~~~~~~~~ 194 (197)
T PRK12339 168 IADA--RGYNIKVIDTDNYREARNPLLDP 194 (197)
T ss_pred HHHH--HHcCCCeecCccHHHHHHHHHHH
Confidence 2332 2233 366899999999988843
No 38
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.75 E-value=0.00035 Score=66.98 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=53.6
Q ss_pred CeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHhcCCCCccEEEeCC-C
Q psy6613 203 QLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-AAEKLAQCPQEMFDVILDEN-Q 279 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-aa~eLEq~~~~~FD~VIvND-d 279 (510)
+.||+|+..-- + ... .+.-.+|+|..| .++..+|+..|+..+.+....|+. +....+. ....|+||.|+ +
T Consensus 107 ~~vv~e~pll~---e-~~~~~~~D~vi~V~a~-~e~~~~Rl~~R~~~s~e~~~~ri~~Q~~~~~~--~~~ad~vI~N~g~ 179 (194)
T PRK00081 107 PYVVLDIPLLF---E-NGLEKLVDRVLVVDAP-PETQLERLMARDGLSEEEAEAIIASQMPREEK--LARADDVIDNNGD 179 (194)
T ss_pred CEEEEEehHhh---c-CCchhhCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHH--HHhCCEEEECCCC
Confidence 68898885521 1 111 223467777776 666777888887667777777773 2222222 24569999997 7
Q ss_pred HHHHHHHHHHHHH
Q psy6613 280 LEDACEHIAEYLE 292 (510)
Q Consensus 280 Ld~A~~eL~~ile 292 (510)
+++...++..+++
T Consensus 180 ~e~l~~qv~~i~~ 192 (194)
T PRK00081 180 LEELRKQVERLLQ 192 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888886654
No 39
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.75 E-value=0.00038 Score=64.61 Aligned_cols=136 Identities=7% Similarity=0.078 Sum_probs=73.3
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCC---Cc------hh--------hhhhhccc----H----HHHHHHHHcCCeE
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSN---SR------SS--------VLTEVQTE----I----ERVYELASTLQLV 205 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT---TR------~p--------Fe~~I~Ts----l----esI~~vi~sGKi~ 205 (510)
+||+|+||||+.++|.+... + ....+ .| .+ |......+ . +.+...+..|+.+
T Consensus 9 ~G~~GsGKsTl~~~l~~~~g-~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (188)
T TIGR01360 9 VGGPGSGKGTQCEKIVEKYG-F--THLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGF 85 (188)
T ss_pred ECCCCCCHHHHHHHHHHHhC-C--cEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeE
Confidence 89999999999999986211 1 11111 01 11 11000011 1 2233334568999
Q ss_pred EEEeccCCchhHhhh---cC-CCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHH-HHHH---HHhcCCCC
Q psy6613 206 VLDCDTINHPSQLAK---TN-LSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMV-AAEK---LAQCPQEM 270 (510)
Q Consensus 206 ILDID~qg~~lq~lk---s~-l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~-aa~e---LEq~~~~~ 270 (510)
|+|--+.. ..... .. ..| ++||+..| .+++.+|+..|+. ++.+.+.+|+. .-.+ +...|.+.
T Consensus 86 i~dg~~~~--~~q~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~ 162 (188)
T TIGR01360 86 LIDGYPRE--VKQGEEFERRIGPPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETK 162 (188)
T ss_pred EEeCCCCC--HHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 99987765 32222 22 235 45666665 6888888877763 23456677772 2222 22223222
Q ss_pred ccEEEeC--CCHHHHHHHHHHHHH
Q psy6613 271 FDVILDE--NQLEDACEHIAEYLE 292 (510)
Q Consensus 271 FD~VIvN--DdLd~A~~eL~~ile 292 (510)
=+++++| .+.++.++++..+|+
T Consensus 163 ~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 163 GKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHh
Confidence 2455554 346777777776554
No 40
>KOG3601|consensus
Probab=97.74 E-value=1.2e-05 Score=78.65 Aligned_cols=54 Identities=11% Similarity=0.333 Sum_probs=47.5
Q ss_pred CCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 45 ~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
+...|++|+|||++..+. +|.|++||+++|++..+..||.|+. .|+.|+||...
T Consensus 161 ~~~~yqQa~~df~~~pp~-------ql~f~~gq~~~v~~~ss~~ww~Gs~---lg~agiFpagy 214 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPG-------QLAFRRGQQIQVLDSSSPFWWFGSK---LGRAGIFPAGY 214 (222)
T ss_pred ccchhhhhcCCCCCCCch-------hhccccCCcceeecCCCcchhhccc---cCceeeecCcc
Confidence 467789999999988764 6999999999999999999999998 46899999754
No 41
>KOG0162|consensus
Probab=97.73 E-value=1.9e-05 Score=88.20 Aligned_cols=51 Identities=25% Similarity=0.543 Sum_probs=44.7
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
-.++|+|||.+++-+ +|+|++||||+|+..+-.+||+|+. +|..||+|...
T Consensus 1052 p~~~A~Y~y~gq~~d-------Els~~~~diIei~~edpSGWw~gk~---~~keG~~P~~Y 1102 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVD-------ELSFKKGDIIEIMREDPSGWWLGKL---NGKEGLFPGNY 1102 (1106)
T ss_pred cceeeeccCCCCCcc-------cccccCCCEEEEeccCCCcchhhcc---CCccccccccc
Confidence 357899999999543 6999999999999999999999995 67899999765
No 42
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.66 E-value=0.00057 Score=66.14 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=55.0
Q ss_pred HcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC
Q psy6613 200 STLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN 278 (510)
Q Consensus 200 ~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND 278 (510)
.+++.||+|+..-- +.--..+.-.+|||..|.-..++ |+..|+..+.+....|+ .+....+. ....|+||.|+
T Consensus 101 ~~~~~vi~e~pLL~---E~~~~~~~D~vi~V~a~~e~r~~-RL~~R~g~s~e~a~~ri~~Q~~~~~k--~~~aD~vI~N~ 174 (196)
T PRK14732 101 AEGKLVIWEVPLLF---ETDAYTLCDATVTVDSDPEESIL-RTISRDGMKKEDVLARIASQLPITEK--LKRADYIVRND 174 (196)
T ss_pred hcCCcEEEEeeeee---EcCchhhCCEEEEEECCHHHHHH-HHHHcCCCCHHHHHHHHHHcCCHHHH--HHhCCEEEECC
Confidence 35678998886521 11001334678999998655554 55555555667777787 32211122 25679999997
Q ss_pred -CHHHHHHHHHHHHHHHH
Q psy6613 279 -QLEDACEHIAEYLEAYW 295 (510)
Q Consensus 279 -dLd~A~~eL~~ileai~ 295 (510)
+++....++..+++.|.
T Consensus 175 ~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 175 GNREGLKEECKILYSTLL 192 (196)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 67777777776655543
No 43
>KOG2856|consensus
Probab=97.62 E-value=2.2e-05 Score=82.10 Aligned_cols=54 Identities=30% Similarity=0.477 Sum_probs=46.3
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-CceEEEEccCCCceeeecChhHH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPSPVKL 110 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-~WWqar~v~~~~~~GlIPS~~~~ 110 (510)
..|||||||.|++.+ +|+|+.||.|+++...|. +|-+||. +.|++||.|.+.-+
T Consensus 415 v~vraLYDY~gqE~D-------ElsfkaGd~l~kl~eeDeqGWC~Grl--~~G~vGLyPAnYVe 469 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGD-------ELSFKAGDELEKLEEEDEQGWCKGRL--DSGRVGLYPANYVE 469 (472)
T ss_pred eeEEeeeccCccccc-------chhhccccHhhhcCCccccccccccc--cCCcccccchhhhh
Confidence 569999999999976 599999999999998665 7889988 35899999987654
No 44
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.62 E-value=0.00068 Score=61.82 Aligned_cols=139 Identities=21% Similarity=0.195 Sum_probs=74.3
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeee---cCCCchh----hhhh----h-cccHHHHHHHHHcCCeEEEEeccCC----
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIME---RSNSRSS----VLTE----V-QTEIERVYELASTLQLVVLDCDTIN---- 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sV---shTTR~p----Fe~~----I-~TslesI~~vi~sGKi~ILDID~qg---- 213 (510)
+|++|+||||+.+.|-+ ..-.|.-.- ...+..+ +... . ....+.+.+++.... +|+......
T Consensus 10 ~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-~vi~~g~~~~~~~ 88 (175)
T PRK00131 10 IGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHN-LVISTGGGAVLRE 88 (175)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC-CEEEeCCCEeecH
Confidence 89999999999998877 321121110 0000000 1000 0 023345666665433 455543211
Q ss_pred chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC---C---cHHHHHHHH-HHHHHHHhcCCCCccEEEe--CCCHHHHH
Q psy6613 214 HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK---S---QTRHLNVQM-VAAEKLAQCPQEMFDVILD--ENQLEDAC 284 (510)
Q Consensus 214 ~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt---~---~~e~i~kRL-~aa~eLEq~~~~~FD~VIv--NDdLd~A~ 284 (510)
...+.++ -..++|||.. +.+.+.+|+..+.. . .......++ ..... .|...+|++|. +-+++++.
T Consensus 89 ~~r~~l~--~~~~~v~l~~-~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~dl~idt~~~~~~e~~ 162 (175)
T PRK00131 89 ENRALLR--ERGTVVYLDA-SFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDP---LYEEVADITVETDGRSPEEVV 162 (175)
T ss_pred HHHHHHH--hCCEEEEEEC-CHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH---HHHhhcCeEEeCCCCCHHHHH
Confidence 0012222 2457888877 46778888865442 1 111222223 22222 23356899996 45679999
Q ss_pred HHHHHHHHHHHH
Q psy6613 285 EHIAEYLEAYWR 296 (510)
Q Consensus 285 ~eL~~ileai~~ 296 (510)
+.+.++|+.||+
T Consensus 163 ~~I~~~v~~~~~ 174 (175)
T PRK00131 163 NEILEKLEAAWR 174 (175)
T ss_pred HHHHHHHHhhcc
Confidence 999999999996
No 45
>PRK04182 cytidylate kinase; Provisional
Probab=97.59 E-value=0.0024 Score=58.72 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=75.6
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCC-Cchh----------hhhhhc------ccH-HHHHHHHHcCCeEEEEeccC
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSN-SRSS----------VLTEVQ------TEI-ERVYELASTLQLVVLDCDTI 212 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT-TR~p----------Fe~~I~------Tsl-esI~~vi~sGKi~ILDID~q 212 (510)
+|++|+||||+.+.|.+... +.+.-... -|.. |.+... ..+ ..+..+...+..||++-...
T Consensus 6 ~G~~GsGKstia~~la~~lg-~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~g~~~ 84 (180)
T PRK04182 6 SGPPGSGKTTVARLLAEKLG-LKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVLEGRLA 84 (180)
T ss_pred ECCCCCCHHHHHHHHHHHcC-CcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 89999999999999986211 11111000 0110 100000 111 22334443566778775432
Q ss_pred CchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHH-----HHHHHHhcC------CCCccEEEeCC--C
Q psy6613 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMV-----AAEKLAQCP------QEMFDVILDEN--Q 279 (510)
Q Consensus 213 g~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~-----aa~eLEq~~------~~~FD~VIvND--d 279 (510)
+ -+++ ...-++|||.+| .+++.+|+..|+..+.......+. ........| .+.||++|.++ +
T Consensus 85 ~---~~~~-~~~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~ 159 (180)
T PRK04182 85 G---WMAK-DYADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWD 159 (180)
T ss_pred c---eEec-CCCCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCC
Confidence 2 1222 223477898886 777888887776544443333331 112223333 26899999864 6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6613 280 LEDACEHIAEYLEAYW 295 (510)
Q Consensus 280 Ld~A~~eL~~ileai~ 295 (510)
++++++.+.++++.+-
T Consensus 160 ~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 160 PEGVFDIILTAIDKLL 175 (180)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999887776543
No 46
>KOG4348|consensus
Probab=97.59 E-value=4.8e-05 Score=81.03 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=44.5
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecCh
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSP 107 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~ 107 (510)
-|+|.+|-|+++.|+ +|+|+.||||+.+.+ .|.+||.|.. +|+.|+||-+
T Consensus 262 eycrv~F~Ye~qndD-------ELt~KEgdil~lItK~cgdaGWweGEL---nGk~GvFPDN 313 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDD-------ELTLKEGDILILITKNCGDAGWWEGEL---NGKKGVFPDN 313 (627)
T ss_pred hheeeeeeecCCCcc-------ceeeccccEEEEecccccccceeeeee---cCccccCCch
Confidence 489999999999997 599999999999985 5789999998 6789999965
No 47
>PRK06762 hypothetical protein; Provisional
Probab=97.58 E-value=0.00075 Score=62.14 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=69.7
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhh------hc--ccHHHHHHHHHcCCeEEEEeccCCch----hH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTE------VQ--TEIERVYELASTLQLVVLDCDTINHP----SQ 217 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~------I~--TslesI~~vi~sGKi~ILDID~qg~~----lq 217 (510)
.|++|+||||+.+.|.+ .+..+.+.-...-|..+... .. .-...++..++.|..||+|.-..... .+
T Consensus 8 ~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~~~~~~~~ 87 (166)
T PRK06762 8 RGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSDRYGPMLK 87 (166)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccHhHHHHHH
Confidence 89999999999999987 54322222111112111000 00 11233445577899999987542200 11
Q ss_pred hhhcCC--CceEEEEeCCCHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhcCCCCccEEEeCCC--HHHHHHHHH
Q psy6613 218 LAKTNL--SPCIVYLKISSPKVLQRLIKSRGKS---QTRHLNVQMVAAEKLAQCPQEMFDVILDENQ--LEDACEHIA 288 (510)
Q Consensus 218 ~lks~l--~PivIFIkPPS~e~L~~rLr~Rgt~---~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDd--Ld~A~~eL~ 288 (510)
.+.... ...+||+.+| .++..+|+..|+.. ..+.+..++..-..+ +.+|++|++++ +++.++++.
T Consensus 88 ~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~i~ 159 (166)
T PRK06762 88 ELIHLFRGNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWWNPHDTL-----GVIGETIFTDNLSLKDIFDAIL 159 (166)
T ss_pred HHHHhcCCCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHHhhcCCc-----CCCCeEEecCCCCHHHHHHHHH
Confidence 122222 3367888876 66777777777542 233333333322222 34688887655 555555554
No 48
>PRK01184 hypothetical protein; Provisional
Probab=97.56 E-value=0.0012 Score=61.79 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCeEEEEeccCCchhHhhhcCC--CceEEEEeCCCHHHHHHHHHhcCCC----cHHHHHHHHHHHHH--HHhcCCCCccE
Q psy6613 202 LQLVVLDCDTINHPSQLAKTNL--SPCIVYLKISSPKVLQRLIKSRGKS----QTRHLNVQMVAAEK--LAQCPQEMFDV 273 (510)
Q Consensus 202 GKi~ILDID~qg~~lq~lks~l--~PivIFIkPPS~e~L~~rLr~Rgt~----~~e~i~kRL~aa~e--LEq~~~~~FD~ 273 (510)
|..||+|.-..-.-.+.++..+ ..++|||..| .++..+|+..|+.. +.+.+..|+..... ++..+ ..=|+
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~-~~ad~ 157 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVI-ALADY 157 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHH-HhcCE
Confidence 6788888642110022233222 2367888765 55666677767632 23455555522111 11111 34589
Q ss_pred EEeCC-CHHHHHHHHHHHHHHHHH
Q psy6613 274 ILDEN-QLEDACEHIAEYLEAYWR 296 (510)
Q Consensus 274 VIvND-dLd~A~~eL~~ileai~~ 296 (510)
+|.|+ ++++...++..+++.+..
T Consensus 158 vI~N~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 158 MIVNDSTLEEFRARVRKLLERILR 181 (184)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhc
Confidence 99876 799999999987776654
No 49
>KOG3875|consensus
Probab=97.55 E-value=1.6e-05 Score=81.59 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=54.2
Q ss_pred HHHHHHHH-HhhhccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC-----CceEEEEccCCCceee
Q psy6613 30 KERQALSQ-LEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-----NWWIGRLVKEGSECGF 103 (510)
Q Consensus 30 ~~~~a~~~-L~~a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~-----~WWqar~v~~~~~~Gl 103 (510)
.+.+|+++ -..|+.-.+..+.||+|||.+.+. .+|+|++||+|+|..++|. +||+.+.. +++..|+
T Consensus 250 ~s~~~q~~q~n~a~~~dp~~~arA~YdF~a~np-------~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~-dg~~tG~ 321 (362)
T KOG3875|consen 250 YSKEAQESQRNWAKGIDPHEFARALYDFVARNP-------VELSLKKGDMLAIASKEDQQGVRCEGWLLATR-DGGTTGL 321 (362)
T ss_pred HHHHHHHHhhCcCcCCChHHHHHHHhhhhcCCH-------HHhhhhcCchhhcccccccCCCCCcceeeeec-cCCeeee
Confidence 34555555 333433334467999999999865 4799999999999998654 69999987 5679999
Q ss_pred ecChhH
Q psy6613 104 IPSPVK 109 (510)
Q Consensus 104 IPS~~~ 109 (510)
||.+.-
T Consensus 322 iP~NYv 327 (362)
T KOG3875|consen 322 IPINYV 327 (362)
T ss_pred eehhhh
Confidence 998764
No 50
>KOG4225|consensus
Probab=97.53 E-value=5.7e-05 Score=80.52 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=47.9
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
...||+|+|.+++.. +|+|.+|||+.|+.+-|.||..|.. +|+.|++|....+-
T Consensus 231 ~~aralf~F~~qt~k-------EL~~~kGDIVyI~rkvD~nWyeGEh---hGr~GifP~sYvE~ 284 (489)
T KOG4225|consen 231 RAARALFDFEAQTPK-------ELPFNKGDIVYILRKVDQNWYEGEH---HGRVGIFPASYVEI 284 (489)
T ss_pred chhhheeccccCCcc-------ccccCCCCEEEEEeeccCceeeeee---cceecceechheee
Confidence 348999999999875 5899999999999999999999987 68999999887654
No 51
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.48 E-value=0.00036 Score=72.27 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=64.5
Q ss_pred EecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhhhhh-----------------c------ccHHHHHHH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVLTEV-----------------Q------TEIERVYEL 198 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe~~I-----------------~------TslesI~~v 198 (510)
+||+|+|||+|..+|.+ .... +...+++||++|-.+++ . --.+.|.++
T Consensus 10 ~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~~~i~~i 89 (307)
T PRK00091 10 VGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDALAAIADI 89 (307)
T ss_pred ECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHHHHHHHH
Confidence 99999999999999987 4332 56667899999922111 1 346678889
Q ss_pred HHcCCeEEEEeccCCchhHh-hhcCCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 199 ASTLQLVVLDCDTINHPSQL-AKTNLSPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 199 i~sGKi~ILDID~qg~~lq~-lks~l~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
+++|+++||+ -| ..+ ++.-+..+ +..||+.+.++.+++.+..
T Consensus 90 ~~~gk~pIlv---GG--t~~Y~~al~~g~--~~~p~~~~~~r~~l~~~~~ 132 (307)
T PRK00091 90 LARGKLPILV---GG--TGLYIKALLEGL--SPLPPADPELRAELEALAA 132 (307)
T ss_pred HhCCCCEEEE---Cc--HHHHHHHhccCC--CCCCCCCHHHHHHHHHHHH
Confidence 9999999998 34 344 34433333 2679999999999887644
No 52
>PRK13975 thymidylate kinase; Provisional
Probab=97.45 E-value=0.0044 Score=58.33 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=71.8
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCch--------------h------hhhhhcccHHHHHHHHHcCCeEEEEe
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS--------------S------VLTEVQTEIERVYELASTLQLVVLDC 209 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~--------------p------Fe~~I~TslesI~~vi~sGKi~ILDI 209 (510)
.|+.|+||||+.+.|-+ ....+ ...+..+-- + |...-......|...+.. .+||+|=
T Consensus 8 eG~~GsGKtT~~~~L~~~l~~~~-~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~~vi~DR 85 (196)
T PRK13975 8 EGIDGSGKTTQAKLLAEKLNAFW-TCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-RDVVCDR 85 (196)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCe-eECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CEEEEEC
Confidence 89999999999998887 33222 222221110 0 000000122334444444 6789982
Q ss_pred ccC---------CchhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHH-HHHHHHHh--cCCCCc
Q psy6613 210 DTI---------NHPSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQM-VAAEKLAQ--CPQEMF 271 (510)
Q Consensus 210 D~q---------g~~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL-~aa~eLEq--~~~~~F 271 (510)
-+- |...+.+.. .+.|-+||..-.+.+++.+|+..|+.+. ..+...++ ..-.++.. .+...+
T Consensus 86 y~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 165 (196)
T PRK13975 86 YVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKY 165 (196)
T ss_pred chhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcC
Confidence 111 111122111 2356556666668899999998887321 22333344 33333332 122344
Q ss_pred cEEEeC---CCHHHHHHHHHHHHH
Q psy6613 272 DVILDE---NQLEDACEHIAEYLE 292 (510)
Q Consensus 272 D~VIvN---DdLd~A~~eL~~ile 292 (510)
.++++| .+.++.++++.+.|.
T Consensus 166 ~~~~Id~~~~~~eev~~~I~~~i~ 189 (196)
T PRK13975 166 GFIVIDTTNKSIEEVFNEILNKIK 189 (196)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Confidence 455555 368888888885553
No 53
>PRK03839 putative kinase; Provisional
Probab=97.44 E-value=0.0032 Score=58.88 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=65.4
Q ss_pred eE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-----hhhhhcccHHHHHHHH---HcCCeEEEEeccCCchhHh
Q psy6613 149 II-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-----VLTEVQTEIERVYELA---STLQLVVLDCDTINHPSQL 218 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-----Fe~~I~TslesI~~vi---~sGKi~ILDID~qg~~lq~ 218 (510)
++ +|++|+||||+.++|.+ ..-.|. .....-+.. |..........+...+ ..+..+|+|..... .
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~i-d~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~----l 77 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYV-DLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSH----L 77 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE-ehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhccCCCEEEEecccc----c
Confidence 44 99999999999999887 221121 110000100 1111111222232222 13667899875432 1
Q ss_pred hhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHhcCCCCccEEEeC--CCHHHHHHHHHHHHH
Q psy6613 219 AKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR---HLNVQMVAAEKLAQCPQEMFDVILDE--NQLEDACEHIAEYLE 292 (510)
Q Consensus 219 lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e---~i~kRL~aa~eLEq~~~~~FD~VIvN--DdLd~A~~eL~~ile 292 (510)
.+ ..++||+. -+.+++.+|++.|+..... ....++.....++......-.++|.. .++++.+.++..+|.
T Consensus 78 ~~---~~~vi~L~-~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~ 152 (180)
T PRK03839 78 LP---VDYVIVLR-AHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIK 152 (180)
T ss_pred cC---CCEEEEEE-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 23456655 5678889999888754221 11122211100111101112245543 378999988885553
No 54
>PRK14532 adenylate kinase; Provisional
Probab=97.40 E-value=0.0018 Score=60.97 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=76.2
Q ss_pred eE-EecCcCChHHHHHHHhcCCCCceeeecCCCchhh----------hhhhc--------ccHHHHHHHH---HcCCeEE
Q psy6613 149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSV----------LTEVQ--------TEIERVYELA---STLQLVV 206 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pF----------e~~I~--------TslesI~~vi---~sGKi~I 206 (510)
++ +||+|+||+|+.++|.+....-.++....-|... ...+. +..+.+.+.+ ..|.-+|
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~v 82 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAI 82 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence 44 9999999999999998733222333323333310 00010 1122222222 2467799
Q ss_pred EEeccCCchhHh-------hhc-CCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH-HHHHH---HHhcC
Q psy6613 207 LDCDTINHPSQL-------AKT-NLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM-VAAEK---LAQCP 267 (510)
Q Consensus 207 LDID~qg~~lq~-------lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL-~aa~e---LEq~~ 267 (510)
||--|.. ... ++. ...| ++||+..| .+++.+|+.+|.. ++.+...+|+ .--.+ +...|
T Consensus 83 ldg~pr~--~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y 159 (188)
T PRK14532 83 FDGFPRT--VAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYY 159 (188)
T ss_pred EeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9976654 222 222 3556 56777776 6778888876642 2345566777 22222 22333
Q ss_pred CCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613 268 QEMFDVILD--ENQLEDACEHIAEYLE 292 (510)
Q Consensus 268 ~~~FD~VIv--NDdLd~A~~eL~~ile 292 (510)
...--++.+ +.++++.++++..+|+
T Consensus 160 ~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 160 AGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 221113333 4579999999886664
No 55
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.37 E-value=0.005 Score=56.49 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh---h-------hhh----hcccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613 150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS---V-------LTE----VQTEIERVYELASTLQLVVLDCDTINH 214 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p---F-------e~~----I~TslesI~~vi~sGKi~ILDID~qg~ 214 (510)
++||+|+||||+.+.|.. ....+--......+.. + ... +..-.+.+...+..|+.+|+|+..-..
T Consensus 3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~~~ 82 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSALKR 82 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEecccHH
Confidence 489999999999998887 3311211111111110 0 000 012234555677788888888865320
Q ss_pred h-hHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhcCCCCccEEEeC--CCHHHHHHHHH
Q psy6613 215 P-SQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKS--QTRHLNVQMVAAEKLAQCPQEMFDVILDE--NQLEDACEHIA 288 (510)
Q Consensus 215 ~-lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~--~~e~i~kRL~aa~eLEq~~~~~FD~VIvN--DdLd~A~~eL~ 288 (510)
. ...++. .....+||+.. +.+++.+|++.|+.. ..+.+..++. +++.-.....++++++ ...++..+++.
T Consensus 83 ~~r~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~~~---~~~~~~~~e~~~~~id~~~~~~~~~~~~~ 158 (163)
T TIGR01313 83 HYRDILREAEPNLHFIYLSG-DKDVILERMKARKGHFMKADMLESQFA---ALEEPLADETDVLRVDIDQPLEGVEEDCI 158 (163)
T ss_pred HHHHHHHhcCCCEEEEEEeC-CHHHHHHHHHhccCCCCCHHHHHHHHH---HhCCCCCCCCceEEEECCCCHHHHHHHHH
Confidence 0 111222 22334567765 488999999988642 1223332222 2222111223555554 44567777766
Q ss_pred HHH
Q psy6613 289 EYL 291 (510)
Q Consensus 289 ~il 291 (510)
++|
T Consensus 159 ~~~ 161 (163)
T TIGR01313 159 AVV 161 (163)
T ss_pred HHH
Confidence 443
No 56
>PRK14530 adenylate kinase; Provisional
Probab=97.33 E-value=0.0026 Score=61.52 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=74.1
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCCCceee-ec--------------CCC----chhhhh-h-hc--ccHHHHHHHHHcC
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPSKRAIM-ER--------------SNS----RSSVLT-E-VQ--TEIERVYELASTL 202 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s-Vs--------------hTT----R~pFe~-~-I~--TslesI~~vi~sG 202 (510)
+++ +||+|+||||+.+.|.+ +. +.+. .. .+. +.-+.. . +- ....-+.+.+.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~ 82 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDA 82 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence 555 99999999999999987 32 2111 10 000 000100 0 00 1223334445556
Q ss_pred CeEEEEeccCCchhHhhh---cCC-CceEEEEeCCCHHHHHHHHHhc---------------------------------
Q psy6613 203 QLVVLDCDTINHPSQLAK---TNL-SPCIVYLKISSPKVLQRLIKSR--------------------------------- 245 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~lk---s~l-~PivIFIkPPS~e~L~~rLr~R--------------------------------- 245 (510)
..+|+|--+.. ....+ ... .-++||+..| .+++.+|+.+|
T Consensus 83 ~~~IldG~pr~--~~q~~~l~~~~~~d~vI~Ld~~-~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R 159 (215)
T PRK14530 83 DGFVLDGYPRN--LEQAEYLESITDLDVVLYLDVS-EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR 159 (215)
T ss_pred CCEEEcCCCCC--HHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence 66788865544 22222 112 2345556555 45555665444
Q ss_pred CCCcHHHHHHHH----HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613 246 GKSQTRHLNVQM----VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLE 292 (510)
Q Consensus 246 gt~~~e~i~kRL----~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ile 292 (510)
+.+..+.+.+|| +....+..+|.+..-++.+ +.++++.++++..+|+
T Consensus 160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 445667888998 2223455556443223333 4678999998886653
No 57
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.33 E-value=0.0061 Score=56.52 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=69.3
Q ss_pred EecCcCChHHHHHHHhc-C-CCCceeee---cCCCchh------hhh------------hh------cccHHHHHHHHHc
Q psy6613 151 ITRVTADISLAKRSLMS-N-PSKRAIME---RSNSRSS------VLT------------EV------QTEIERVYELAST 201 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~-P~~F~~sV---shTTR~p------Fe~------------~I------~TslesI~~vi~s 201 (510)
.|+.|+||||+.++|.+ . ...+...+ +.++... +.. .. ....+.+......
T Consensus 6 eG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (200)
T cd01672 6 EGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKPALAR 85 (200)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999886 3 22222221 1122101 110 00 0122334555678
Q ss_pred CCeEEEEe------ccCCc-------hhHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCcH-----HHHHHHH-
Q psy6613 202 LQLVVLDC------DTINH-------PSQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQT-----RHLNVQM- 257 (510)
Q Consensus 202 GKi~ILDI------D~qg~-------~lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~-----e~i~kRL- 257 (510)
|+++|+|= -.++. -...+.. .+.| ++||+.. +.+++.+|+..|+.... .+..+++
T Consensus 86 ~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 164 (200)
T cd01672 86 GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDI-DPEVGLARIEARGRDDRDEQEGLEFHERVR 164 (200)
T ss_pred CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeC-CHHHHHHHHHhcCCcchhhhhhHHHHHHHH
Confidence 99999992 22210 0111111 2345 4555555 45888889888876432 2333444
Q ss_pred HHHHHHHhcCCCCccEEEeCC--CHHHHHHHHHHHH
Q psy6613 258 VAAEKLAQCPQEMFDVILDEN--QLEDACEHIAEYL 291 (510)
Q Consensus 258 ~aa~eLEq~~~~~FD~VIvND--dLd~A~~eL~~il 291 (510)
..-.++...+ ..+.+++|. ++++.++++.+.|
T Consensus 165 ~~y~~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i 198 (200)
T cd01672 165 EGYLELAAQE--PERIIVIDASQPLEEVLAEILKAI 198 (200)
T ss_pred HHHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHH
Confidence 2223333322 234565553 3556666665433
No 58
>PRK14531 adenylate kinase; Provisional
Probab=97.33 E-value=0.0054 Score=58.01 Aligned_cols=142 Identities=14% Similarity=0.093 Sum_probs=76.4
Q ss_pred CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc--------ccHHHHHHHHH--cCCeE
Q psy6613 147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ--------TEIERVYELAS--TLQLV 205 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~--------TslesI~~vi~--sGKi~ 205 (510)
.|++ +||+|+||+|+.++|.+....-.++....-|. + ....+. .-...+.+.+. .++-+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ 82 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW 82 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence 3566 99999999999999987222112221111111 1 011011 11122332222 35668
Q ss_pred EEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhcCC--CcHHHHHHHH----HHHHHHHhcCCCC
Q psy6613 206 VLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSRGK--SQTRHLNVQM----VAAEKLAQCPQEM 270 (510)
Q Consensus 206 ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~Rgt--~~~e~i~kRL----~aa~eLEq~~~~~ 270 (510)
|||--|.. ....+. ...+ .+||+..| .+++.+|+.+|+. ++.+.+.+|+ .....+.+.|...
T Consensus 83 ilDGfpr~--~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~ 159 (183)
T PRK14531 83 LLDGFPRT--VAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQR 159 (183)
T ss_pred EEeCCCCC--HHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988766 333221 1233 36777774 7889999988765 3456677888 2223344444322
Q ss_pred cc-EEEeC-CCHHHHHHHHHHHH
Q psy6613 271 FD-VILDE-NQLEDACEHIAEYL 291 (510)
Q Consensus 271 FD-~VIvN-DdLd~A~~eL~~il 291 (510)
-= ++|.+ .+.++.+.++..+|
T Consensus 160 ~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 160 GLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 11 33333 47888888887543
No 59
>KOG2996|consensus
Probab=97.33 E-value=0.00014 Score=79.78 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=43.7
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhHHH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
+...|.|||.+.+- .+|||+.|||+.|.++ .|.+||.|.. +|++||+|+..-.|
T Consensus 806 g~AvarYdf~ard~-------~eLSlk~GDvV~i~~k~g~d~GWWkGev---ngrvGwFPstYVee 861 (865)
T KOG2996|consen 806 GTAVARYDFCARDM-------RELSLKEGDVVKIYDKVGEDQGWWKGEV---NGRVGWFPSTYVEE 861 (865)
T ss_pred eeeeeccccCCCch-------hhcccccCCEEEEehhccccCceeccee---cCcccccccccccc
Confidence 34557788877654 3699999999999997 5789999998 68999999987544
No 60
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.29 E-value=0.008 Score=54.92 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=70.0
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCC---Cchh----------hhhhh------cc-cHHHHHHHHHcCCeEEEEec
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSN---SRSS----------VLTEV------QT-EIERVYELASTLQLVVLDCD 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT---TR~p----------Fe~~I------~T-slesI~~vi~sGKi~ILDID 210 (510)
.|++|+||||+.+.|.+.. .|. +-++ -+.. |.... .. -.+.+.+.+..+..||+|.-
T Consensus 6 ~G~~GSGKstia~~la~~l-g~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~g~ 82 (171)
T TIGR02173 6 SGPPGSGKTTVAKILAEKL-SLK--LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLESR 82 (171)
T ss_pred ECCCCCCHHHHHHHHHHHc-CCc--eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 8999999999999997621 111 1111 0100 11110 01 11224445546778888865
Q ss_pred cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----HHhc------CCCCccEEEeCCC
Q psy6613 211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEK-----LAQC------PQEMFDVILDENQ 279 (510)
Q Consensus 211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~e-----LEq~------~~~~FD~VIvNDd 279 (510)
..+ . .++ ...-++|||.+| .+...+|+..|+..+.+...+++...++ .... ....||++|..+.
T Consensus 83 ~~~--~-~~~-~~~d~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~ 157 (171)
T TIGR02173 83 LAG--W-IVR-EYADVKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINTSN 157 (171)
T ss_pred ccc--e-eec-CCcCEEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCC
Confidence 433 1 122 222378999986 6767777777766666666666522211 1111 2367998887665
Q ss_pred --HHHHHHHHH
Q psy6613 280 --LEDACEHIA 288 (510)
Q Consensus 280 --Ld~A~~eL~ 288 (510)
.|+ ++.+.
T Consensus 158 ~~~~~-~~~i~ 167 (171)
T TIGR02173 158 WDPNN-VDIIL 167 (171)
T ss_pred CCHHH-HHHHH
Confidence 455 54444
No 61
>KOG4348|consensus
Probab=97.26 E-value=8.3e-05 Score=79.27 Aligned_cols=58 Identities=21% Similarity=0.496 Sum_probs=48.6
Q ss_pred CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
++..-.+.+.|.|.++.|+ +|.|+.||||+|+..-.++||.|.. +|..|+|||+---|
T Consensus 97 q~~~r~c~v~f~Y~pqndD-------ELelkVGDiIeli~eVEeGWw~G~L---ngk~GmFPsNFVke 154 (627)
T KOG4348|consen 97 QPQARICVVTFAYSPQNDD-------ELELKVGDIIELISEVEEGWWKGKL---NGKVGMFPSNFVKE 154 (627)
T ss_pred CccceeEEEEEeecCCCCc-------eeeeeeccHHHhhhHhhhhhhhcee---cCcccccchhhcee
Confidence 3334445689999999987 5999999999999998899999998 57999999986544
No 62
>KOG0515|consensus
Probab=97.26 E-value=0.00014 Score=79.13 Aligned_cols=51 Identities=29% Similarity=0.581 Sum_probs=42.9
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCC---CceEEEEccCCCceeeecChhHH
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS---NWWIGRLVKEGSECGFIPSPVKL 110 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~---~WWqar~v~~~~~~GlIPS~~~~ 110 (510)
|=|+|||+++.++ +|+|+.||-|.|+..+|+ +||-|++ +++.|++|...+.
T Consensus 686 vYAlwdYeaqf~D-------ELsf~eGd~lTvirr~d~~eteWWwa~l---ng~eGyVPRnylg 739 (752)
T KOG0515|consen 686 VYALWDYEAQFED-------ELSFDEGDELTVIRRDDEVETEWWWARL---NGEEGYVPRNYLG 739 (752)
T ss_pred eEEeecccccccc-------cccccCCceeEEEecCCcchhhhhhHhh---cCcccccchhhhh
Confidence 6699999999887 599999999999998665 8999996 5678888877653
No 63
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.25 E-value=0.0042 Score=59.89 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=78.1
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------hh----hhhhc--------ccHHHHHHHHHc----CCe
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------SV----LTEVQ--------TEIERVYELAST----LQL 204 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------pF----e~~I~--------TslesI~~vi~s----GKi 204 (510)
|++ +||+|+||+|+.++|.+...-..++...--|. +. .+.+. .-.+-+.+.+.+ ++.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 355 99999999999999886222222222111121 10 01111 112334444443 678
Q ss_pred EEEEeccCCchhHhhhc---CC--Cc-eEEEEeCCCHHHHHHHHHhcC--------------------------------
Q psy6613 205 VVLDCDTINHPSQLAKT---NL--SP-CIVYLKISSPKVLQRLIKSRG-------------------------------- 246 (510)
Q Consensus 205 ~ILDID~qg~~lq~lks---~l--~P-ivIFIkPPS~e~L~~rLr~Rg-------------------------------- 246 (510)
.|||--|.. ....+. .+ .| ++||+..|. +++.+|+.+|.
T Consensus 81 ~ilDGfPrt--~~Qa~~l~~~~~~~~~~vi~L~~~~-~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R 157 (210)
T TIGR01351 81 FILDGFPRT--LSQAEALDALLKEKIDAVIELDVPD-EELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQR 157 (210)
T ss_pred EEEeCCCCC--HHHHHHHHHHhccCCCEEEEEECCH-HHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccC
Confidence 999987776 333322 22 23 567777765 77777776663
Q ss_pred -CCcHHHHHHHH----HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHH
Q psy6613 247 -KSQTRHLNVQM----VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYL 291 (510)
Q Consensus 247 -t~~~e~i~kRL----~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~il 291 (510)
.++.+.+.+|| +....+...|....-++.+ +.+.++.+++|..+|
T Consensus 158 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 158 EDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 23457788888 2334455555443223333 467888888887544
No 64
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.25 E-value=0.0085 Score=55.79 Aligned_cols=137 Identities=7% Similarity=0.090 Sum_probs=69.8
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----cc----HHHHHHHHHc--CCeEEEEec
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TE----IERVYELAST--LQLVVLDCD 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----Ts----lesI~~vi~s--GKi~ILDID 210 (510)
+||+|+||||+.++|.+...--.++....-|.. .+..+. .+ .+-+.+.+.+ ++.+|||--
T Consensus 5 ~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~vlDg~ 84 (183)
T TIGR01359 5 LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFLIDGF 84 (183)
T ss_pred ECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEEEeCC
Confidence 899999999999999873222222222222322 011111 11 2223333332 678999998
Q ss_pred cCCchhHhhh-------cCCCc-eEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHHHH----HHHHhcCCCCcc
Q psy6613 211 TINHPSQLAK-------TNLSP-CIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMVAA----EKLAQCPQEMFD 272 (510)
Q Consensus 211 ~qg~~lq~lk-------s~l~P-ivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~aa----~eLEq~~~~~FD 272 (510)
|.. ....+ ....| ++||+..| .+++.+|+..|+. ++.+.+.+|+..- ..+...|...--
T Consensus 85 p~~--~~q~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~ 161 (183)
T TIGR01359 85 PRN--EENLEAWEKLMDNKVNFKFVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGK 161 (183)
T ss_pred CCC--HHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 765 22221 12334 56666665 4777788877754 2345566666211 122222221112
Q ss_pred EEEeC--CCHHHHHHHHHHH
Q psy6613 273 VILDE--NQLEDACEHIAEY 290 (510)
Q Consensus 273 ~VIvN--DdLd~A~~eL~~i 290 (510)
++.+| .+.++.++++.++
T Consensus 162 ~~~Id~~~~~~~v~~~i~~~ 181 (183)
T TIGR01359 162 VKEINAEGSVEEVFEDVEKI 181 (183)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 33333 4577777776644
No 65
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.20 E-value=0.0054 Score=61.75 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=57.1
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchh-h--------------hhhhc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-V--------------LTEVQ-TEIERVYELASTLQLVVLDCDTIN 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-F--------------e~~I~-TslesI~~vi~sGKi~ILDID~qg 213 (510)
+||+|+||||+.+.|.+ ++..+.++. ..-|.. + +..+. .-.+.+.+.+..|..||+|..+..
T Consensus 8 ~G~pGSGKSTla~~L~~~~~~~~~l~~-D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~~~~~ 86 (300)
T PHA02530 8 VGVPGSGKSTWAREFAAKNPKAVNVNR-DDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISDTNLN 86 (300)
T ss_pred EcCCCCCHHHHHHHHHHHCCCCEEEec-cHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 89999999999999988 543222221 111111 0 00011 223445667788999999987654
Q ss_pred chhHh------hhc-CCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 214 HPSQL------AKT-NLSPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 214 ~~lq~------lks-~l~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
+.+. .+. .....+||+.+ +.+++.+|+..|+.
T Consensus 87 -~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~ 125 (300)
T PHA02530 87 -PERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGE 125 (300)
T ss_pred -HHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCc
Confidence 1211 111 23445677776 79999999999964
No 66
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.17 E-value=0.003 Score=63.57 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=56.3
Q ss_pred CeEEEEeccCCchhHh-hhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--
Q psy6613 203 QLVVLDCDTINHPSQL-AKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-- 278 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~-lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-- 278 (510)
..||+|+..- .+. +...+.-.+|||.+ +.++..+|+..|+..+.+++.+|+ .+....+. ....|+||.|+
T Consensus 118 ~~vv~evPLL---~E~~~~~~~~D~iv~V~a-~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~~ek--~~~aD~VI~N~~~ 191 (244)
T PTZ00451 118 LIVVLDAPTL---FETKTFTYFVSASVVVSC-SEERQIERLRKRNGFSKEEALQRIGSQMPLEEK--RRLADYIIENDSA 191 (244)
T ss_pred CEEEEEechh---hccCchhhcCCeEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHH--HHhCCEEEECCCC
Confidence 4899999652 111 01123456788855 466666777777666778888888 32222222 36789999999
Q ss_pred -CHHHHHHHHHHHHHH
Q psy6613 279 -QLEDACEHIAEYLEA 293 (510)
Q Consensus 279 -dLd~A~~eL~~ilea 293 (510)
|+++...++..++..
T Consensus 192 g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 192 DDLDELRGSVCDCVAW 207 (244)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 899999988866643
No 67
>PRK08233 hypothetical protein; Provisional
Probab=97.16 E-value=0.0053 Score=56.70 Aligned_cols=140 Identities=12% Similarity=0.124 Sum_probs=66.0
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecC---CCch----h-------hhh-hhcccHHHHHHHHHcC--CeEEEEeccC
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERS---NSRS----S-------VLT-EVQTEIERVYELASTL--QLVVLDCDTI 212 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh---TTR~----p-------Fe~-~I~TslesI~~vi~sG--Ki~ILDID~q 212 (510)
.|++|+||||+.+.|.. .+..-.+.... .+.+ . ++. .+..-.+.+....+.+ ..+|+|...-
T Consensus 9 ~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vivd~~~~ 88 (182)
T PRK08233 9 AAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYIIVDYPFA 88 (182)
T ss_pred ECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEEEEeeehh
Confidence 79999999999999987 44221111110 0000 0 100 0001223444444444 4455554321
Q ss_pred CchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC-CcHHHHHHHH----HHHHH----HHhcCCCCccEEEeCC-CHHH
Q psy6613 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK-SQTRHLNVQM----VAAEK----LAQCPQEMFDVILDEN-QLED 282 (510)
Q Consensus 213 g~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt-~~~e~i~kRL----~aa~e----LEq~~~~~FD~VIvND-dLd~ 282 (510)
. -...+. ...-++|||..|.-..++++++.... .+.+.+.+++ ..... +.+.+...-+++|.++ ++++
T Consensus 89 ~-~~~~~~-~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~ 166 (182)
T PRK08233 89 Y-LNSEMR-QFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEE 166 (182)
T ss_pred h-ccHHHH-HHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHH
Confidence 1 011111 33458899998765556555533211 1112222222 11111 1122223457777554 6888
Q ss_pred HHHHHHHHHH
Q psy6613 283 ACEHIAEYLE 292 (510)
Q Consensus 283 A~~eL~~ile 292 (510)
.++++..++.
T Consensus 167 i~~~i~~~l~ 176 (182)
T PRK08233 167 IINQIEEELY 176 (182)
T ss_pred HHHHHHHHHH
Confidence 8888886554
No 68
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.15 E-value=0.0077 Score=58.32 Aligned_cols=142 Identities=10% Similarity=0.055 Sum_probs=79.8
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc---CCeE
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST---LQLV 205 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s---GKi~ 205 (510)
|++ +||+|+||+|+.++|.+....-.+++..--|.- ....+. ...+.|.+.+.+ +..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~ 81 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF 81 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence 455 999999999999988873222222222222221 000011 223344444433 3478
Q ss_pred EEEeccCCchhHh---hh----c-CCCc-eEEEEeCCCHHHHHHHHHhcC------------------------------
Q psy6613 206 VLDCDTINHPSQL---AK----T-NLSP-CIVYLKISSPKVLQRLIKSRG------------------------------ 246 (510)
Q Consensus 206 ILDID~qg~~lq~---lk----s-~l~P-ivIFIkPPS~e~L~~rLr~Rg------------------------------ 246 (510)
|||--|.. ... +. . ...+ ++||+..| .+++.+|+..|.
T Consensus 82 VlDGfPr~--~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 82 LLDGFPRT--IPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred EEecCCCC--HHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 99987765 322 21 1 2344 67777777 466777776663
Q ss_pred ---CCcHHHHHHHH----HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHH
Q psy6613 247 ---KSQTRHLNVQM----VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLE 292 (510)
Q Consensus 247 ---t~~~e~i~kRL----~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ile 292 (510)
.++.+.+.+|| .....+...|.+..=++-+ +.+.++.++++..+|.
T Consensus 159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 159 QRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 24467788888 2234455666443223434 4668888888886654
No 69
>KOG3655|consensus
Probab=97.14 E-value=0.00016 Score=77.91 Aligned_cols=53 Identities=25% Similarity=0.554 Sum_probs=46.5
Q ss_pred eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
.-..||+|||++.+|. +|+|..+|+|..++.-|.+||+|+. .+|..||||.++
T Consensus 427 ~q~A~A~~dyqAAddt-------Eisf~p~d~it~Id~vdegww~g~~--pdG~~glfPaNy 479 (484)
T KOG3655|consen 427 PQTARALYDYQAADDT-------EISFDPPDAITLIDQVDEGWWTGQG--PDGEVGLFPANY 479 (484)
T ss_pred CCCccccccccccCCc-------ccccCCccccccccccCCccccccC--CCCCcCcccccc
Confidence 3357899999999986 5889999999999999999999987 467999999864
No 70
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.14 E-value=0.0032 Score=62.29 Aligned_cols=140 Identities=17% Similarity=0.113 Sum_probs=75.3
Q ss_pred EecCcCChHHHHHHHhc-CCC-Cceee-ec-CCCchhh-------hhhhc-ccHHHHHHHHHcCCeEEEEeccCCc-h-h
Q psy6613 151 ITRVTADISLAKRSLMS-NPS-KRAIM-ER-SNSRSSV-------LTEVQ-TEIERVYELASTLQLVVLDCDTINH-P-S 216 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~-~F~~s-Vs-hTTR~pF-------e~~I~-TslesI~~vi~sGKi~ILDID~qg~-~-l 216 (510)
+|++|+||||+.+.|.+ ... .+... ++ ..-|..| +..+. .....|...++.|..||+|-..-.. . .
T Consensus 5 ~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~~~r~ 84 (249)
T TIGR03574 5 TGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYNSMRR 84 (249)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHHHHHH
Confidence 99999999999998876 221 12111 11 1112212 11111 3345688888999999999743110 0 0
Q ss_pred Hh---hhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhcC-CCCccEEEeCC---CHHHHHHHH
Q psy6613 217 QL---AKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEK-LAQCP-QEMFDVILDEN---QLEDACEHI 287 (510)
Q Consensus 217 q~---lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~e-LEq~~-~~~FD~VIvND---dLd~A~~eL 287 (510)
++ .+. ...-++||+.+ +.+++.+|...|+....++...+|....+ -...| ....+++|..+ ++++.+++|
T Consensus 85 ~l~~~ak~~~~~~~~I~l~~-p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i 163 (249)
T TIGR03574 85 DLINIAKEYNKNYIIIYLKA-PLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEI 163 (249)
T ss_pred HHHHHHHhCCCCEEEEEecC-CHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHHHHHH
Confidence 11 122 22334567765 46888888888876544455555521111 11122 23466777543 456777777
Q ss_pred HHHH
Q psy6613 288 AEYL 291 (510)
Q Consensus 288 ~~il 291 (510)
.+++
T Consensus 164 ~~~~ 167 (249)
T TIGR03574 164 LEIS 167 (249)
T ss_pred HHHh
Confidence 6444
No 71
>PRK13808 adenylate kinase; Provisional
Probab=97.13 E-value=0.0094 Score=62.66 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=83.0
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----ccHHHHH----HHHH---cCCeE
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----TEIERVY----ELAS---TLQLV 205 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----TslesI~----~vi~---sGKi~ 205 (510)
|+| +||+|+||+|+..+|.+..+...+++-.--|. + +...+. .+-+.|. +.+. ...-.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ 81 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF 81 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence 455 99999999999999987222222222110011 1 011111 1222222 2221 13457
Q ss_pred EEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc-------C-----CCcHHHHHHHHHH-H---
Q psy6613 206 VLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR-------G-----KSQTRHLNVQMVA-A--- 260 (510)
Q Consensus 206 ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R-------g-----t~~~e~i~kRL~a-a--- 260 (510)
|||--|.. ..+... .+.| ++||+.. +.+++.+|+..| | .++.+.+.+||.. .
T Consensus 82 ILDGFPRt--~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t 158 (333)
T PRK13808 82 ILDGFPRT--VPQAEALDALLKDKQLKLDAVVELRV-NEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQT 158 (333)
T ss_pred EEeCCCCC--HHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHh
Confidence 99988766 433331 2455 4555555 557777777665 2 2345667777721 1
Q ss_pred HHHHhcCCCCccEEEeC--CCHHHHHHHHHHHHHHHHHhcCCCCC
Q psy6613 261 EKLAQCPQEMFDVILDE--NQLEDACEHIAEYLEAYWRATHPPAA 303 (510)
Q Consensus 261 ~eLEq~~~~~FD~VIvN--DdLd~A~~eL~~ileai~~a~h~p~~ 303 (510)
..|...|...--++.+| .++|+.+++|..+|+.++.+.....-
T Consensus 159 ~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~~~~~~~ 203 (333)
T PRK13808 159 EPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAANAKKAA 203 (333)
T ss_pred HHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCCCccccc
Confidence 12334443321234444 46899999999999998877755543
No 72
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.13 E-value=0.012 Score=56.44 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCceEEEEeCCCHHHHHHHHHhc----CCCcHHHHHHHH-HHHHH----HHhcCCCCccEEEeCCC-HHHHHHHHHHHHH
Q psy6613 223 LSPCIVYLKISSPKVLQRLIKSR----GKSQTRHLNVQM-VAAEK----LAQCPQEMFDVILDENQ-LEDACEHIAEYLE 292 (510)
Q Consensus 223 l~PivIFIkPPS~e~L~~rLr~R----gt~~~e~i~kRL-~aa~e----LEq~~~~~FD~VIvNDd-Ld~A~~eL~~ile 292 (510)
+.-++|||.+|.-..+++++... |. +.++...++ ..... ....+....|+||.|+. -+.+++.|.+.|+
T Consensus 125 ~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~-~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~ 203 (209)
T PRK05480 125 LMDIKIFVDTPLDIRLIRRLKRDVNERGR-SLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIR 203 (209)
T ss_pred hhceeEEEeCChhHHHHHHHhhcchhcCC-CHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHH
Confidence 44578999999887777766543 44 344455565 33222 11223467899998774 4556666666665
Q ss_pred HHH
Q psy6613 293 AYW 295 (510)
Q Consensus 293 ai~ 295 (510)
.+|
T Consensus 204 ~~~ 206 (209)
T PRK05480 204 QLL 206 (209)
T ss_pred HHh
Confidence 655
No 73
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.005 Score=59.38 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=77.0
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh------h--hh---hhcccHHHHHHHHH---cCCeEEEEeccCCchh
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------V--LT---EVQTEIERVYELAS---TLQLVVLDCDTINHPS 216 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------F--e~---~I~TslesI~~vi~---sGKi~ILDID~qg~~l 216 (510)
.|.+|+||||++++|-. +++-+-|-..-- + .+ .+-...+.++..+. ....+|+|.+..+
T Consensus 6 TGTPGvGKTT~~~~L~~----lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~h--- 78 (180)
T COG1936 6 TGTPGVGKTTVCKLLRE----LGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSH--- 78 (180)
T ss_pred eCCCCCchHHHHHHHHH----hCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhh---
Confidence 89999999999998874 221122211110 0 01 01144555555555 5678899988754
Q ss_pred HhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH--HHHHHH--Hh--cCCCCccEEEeCCCHHHHHHHHHHH
Q psy6613 217 QLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM--VAAEKL--AQ--CPQEMFDVILDENQLEDACEHIAEY 290 (510)
Q Consensus 217 q~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL--~aa~eL--Eq--~~~~~FD~VIvNDdLd~A~~eL~~i 290 (510)
++. .+=+|||.--.+++|.+||+.||-+.. .+...+ +...-+ |+ .+...+-+=+.|.+.+++.+++..+
T Consensus 79 -l~~---~~dlVvVLR~~p~~L~~RLk~RGy~~e-KI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~i 153 (180)
T COG1936 79 -LLP---DCDLVVVLRADPEVLYERLKGRGYSEE-KILENVEAEILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDI 153 (180)
T ss_pred -cCC---CCCEEEEEcCCHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHH
Confidence 222 245677877888999999999996643 333333 111111 11 1233333344688899999999866
Q ss_pred HHH
Q psy6613 291 LEA 293 (510)
Q Consensus 291 lea 293 (510)
++.
T Consensus 154 i~~ 156 (180)
T COG1936 154 IGG 156 (180)
T ss_pred Hcc
Confidence 653
No 74
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.09 E-value=0.0015 Score=57.97 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=55.0
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecC-CCchh--------------hhhhhc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERS-NSRSS--------------VLTEVQ-TEIERVYELASTLQLVVLDCDTIN 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR~p--------------Fe~~I~-TslesI~~vi~sGKi~ILDID~qg 213 (510)
+||+|+||||+.+.|.+ .. + ..++. +.+.. ...... .-.+.+...+..|..+|+|-..-.
T Consensus 5 ~G~pgsGKSt~a~~l~~~~~--~-~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~~ 81 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLAKRLG--A-VVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNLS 81 (143)
T ss_dssp EESTTSSHHHHHHHHHHHST--E-EEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--S
T ss_pred ECCCCCCHHHHHHHHHHHCC--C-EEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcCC
Confidence 99999999999999997 43 2 22221 11111 000001 233667778899999999854433
Q ss_pred chhH------hhhc-CCCceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613 214 HPSQ------LAKT-NLSPCIVYLKISSPKVLQRLIKSRGKS 248 (510)
Q Consensus 214 ~~lq------~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~ 248 (510)
... .++. .....+|++.+ +.+++.+|+..|+..
T Consensus 82 -~~~r~~~~~~~~~~~~~~~~v~l~~-~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 82 -REERARLRELARKHGYPVRVVYLDA-PEETLRERLAQRNRE 121 (143)
T ss_dssp -HHHHHHHHHHHHHCTEEEEEEEECH-HHHHHHHHHHTTHCC
T ss_pred -HHHHHHHHHHHHHcCCeEEEEEEEC-CHHHHHHHHHhcCCc
Confidence 111 1112 23456677766 568899999888665
No 75
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.08 E-value=0.0043 Score=58.75 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=51.2
Q ss_pred HcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeC
Q psy6613 200 STLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDE 277 (510)
Q Consensus 200 ~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvN 277 (510)
..|..||+++..-- . ... .+.-.+|||..| .++..+|+..|+..+.+.+.+|+ .+....+. ....|+||.|
T Consensus 103 ~~~~~vvi~~pll~---e-~~~~~~~D~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~~~~--~~~ad~vI~N 175 (188)
T TIGR00152 103 SKLAYVLLDVPLLF---E-NKLRSLCDRVIVVDVS-PQLQLERLMQRDNLTEEEVQKRLASQMDIEER--LARADDVIDN 175 (188)
T ss_pred cCCCEEEEEchHhh---h-CCcHHhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHH--HHhCCEEEEC
Confidence 34668888875421 1 111 234567787775 77777888888766778888888 33222222 2568999999
Q ss_pred C-CHHHHHHHHH
Q psy6613 278 N-QLEDACEHIA 288 (510)
Q Consensus 278 D-dLd~A~~eL~ 288 (510)
+ ++++...++.
T Consensus 176 ~~~~e~l~~~~~ 187 (188)
T TIGR00152 176 SATLADLVKQLE 187 (188)
T ss_pred CCCHHHHHHHHh
Confidence 7 4666655553
No 76
>KOG4226|consensus
Probab=97.04 E-value=0.00038 Score=70.76 Aligned_cols=51 Identities=24% Similarity=0.512 Sum_probs=45.2
Q ss_pred eeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613 53 NVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL 113 (510)
Q Consensus 53 lfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err 113 (510)
-|.|.+...+ +|++.+|+.+.|+++..++||.|.. +|++|+|||+...|..
T Consensus 113 Kf~Y~a~~eD-------ELsLtKGtrv~vmEKssDGWWrG~~---ng~VGWFPSNYv~E~~ 163 (379)
T KOG4226|consen 113 KFNYVAERED-------ELSLTKGTRVTVMEKSSDGWWRGSY---NGQVGWFPSNYVTEEV 163 (379)
T ss_pred EEeecccccc-------ccccccCcEEEEEEeccCcceeccc---CCeeccccccceehhc
Confidence 5888887765 6999999999999999999999987 6899999999988855
No 77
>KOG4225|consensus
Probab=97.01 E-value=0.00051 Score=73.46 Aligned_cols=58 Identities=17% Similarity=0.401 Sum_probs=47.3
Q ss_pred cCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 43 ~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
.....+-+||||.|.|+.++ +|.|..||||.|+++=|++|..|.-.. .|..|.||-..
T Consensus 428 t~~~~l~yrAly~Y~pqned-------eLEl~egDii~VmeKcddgWfvGts~r-tg~fGtFPgny 485 (489)
T KOG4225|consen 428 TSSEPLKYRALYSYRPQNED-------ELELREGDIIDVMEKCDDGWFVGTSRR-TGKFGTFPGNY 485 (489)
T ss_pred CCCCcccceeccccCCCCch-------hheeccCCEEeeeecccCcceecccee-cccccccCccc
Confidence 33456669999999999877 499999999999999999999993221 46899999754
No 78
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.01 E-value=0.01 Score=57.48 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=50.3
Q ss_pred CeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-C
Q psy6613 203 QLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDEN-Q 279 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND-d 279 (510)
..|++++..-- -... .+.-.+|||.+|.-. ..+|+..|+.-+.++...|+ .+...-+.. ..-|+||.|+ +
T Consensus 108 ~~vv~e~plL~----e~g~~~~~D~vi~V~a~~e~-ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~--~~ad~vI~N~g~ 180 (200)
T PRK14734 108 KVAVYDMPLLV----EKGLDRKMDLVVVVDVDVEE-RVRRLVEKRGLDEDDARRRIAAQIPDDVRL--KAADIVVDNNGT 180 (200)
T ss_pred CEEEEEeecee----EcCccccCCeEEEEECCHHH-HHHHHHHcCCCCHHHHHHHHHhcCCHHHHH--HhCCEEEECcCC
Confidence 67888876522 0111 234678999996544 45555555334556677777 222111111 3458899986 6
Q ss_pred HHHHHHHHHHHHHHH
Q psy6613 280 LEDACEHIAEYLEAY 294 (510)
Q Consensus 280 Ld~A~~eL~~ileai 294 (510)
++..+.++..+++.+
T Consensus 181 ~e~l~~~v~~~~~~~ 195 (200)
T PRK14734 181 REQLLAQVDGLIAEI 195 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888666554
No 79
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.96 E-value=0.014 Score=56.27 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHH-HHHH----HHHhcCCCCccEEEe-CCCHHHHHHHHHHHHH
Q psy6613 223 LSPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQM-VAAE----KLAQCPQEMFDVILD-ENQLEDACEHIAEYLE 292 (510)
Q Consensus 223 l~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL-~aa~----eLEq~~~~~FD~VIv-NDdLd~A~~eL~~ile 292 (510)
+.-++|||.+|....+.++++. ||.... ....+. .... +.........|+||. +.+.|.+++-|...|.
T Consensus 125 ~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~-~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~ 203 (207)
T TIGR00235 125 LMDLKIFVDTPLDIRLIRRIERDINERGRSLD-SVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK 203 (207)
T ss_pred hCCEEEEEECChhHHHHHHHHHHHHhhCCCHH-HHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence 4458899999988888877654 454433 333333 2111 111233578899996 5778888887775443
No 80
>PLN02422 dephospho-CoA kinase
Probab=96.96 E-value=0.012 Score=58.99 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=57.6
Q ss_pred CeEEEEeccCCchhHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-
Q psy6613 203 QLVVLDCDTINHPSQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN- 278 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND- 278 (510)
+.+|+|+..- ..+ .+.-.+|||..| .++..+|+..|+.-+.++...|+++..-.+. ....-|+||.|+
T Consensus 108 ~~vv~eipLL------~E~~~~~~~D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~ee-k~~~AD~VI~N~g 179 (232)
T PLN02422 108 KVIVLDIPLL------FETKMDKWTKPVVVVWVD-PETQLERLMARDGLSEEQARNRINAQMPLDW-KRSKADIVIDNSG 179 (232)
T ss_pred CEEEEEehhh------hhcchhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChhH-HHhhCCEEEECCC
Confidence 5888888552 122 234567888884 5667777777765667777778722211111 114568999997
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6613 279 QLEDACEHIAEYLEAYWRATHPPAAP 304 (510)
Q Consensus 279 dLd~A~~eL~~ileai~~a~h~p~~~ 304 (510)
++++...++..+++.+. +|--|.
T Consensus 180 s~e~L~~qv~~ll~~l~---~~~~~~ 202 (232)
T PLN02422 180 SLEDLKQQFQKVLEKIR---APLTWK 202 (232)
T ss_pred CHHHHHHHHHHHHHHHh---cchHHH
Confidence 78888888887776663 444443
No 81
>KOG1264|consensus
Probab=96.92 E-value=0.00049 Score=78.04 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=49.8
Q ss_pred eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
.+.|||||||-+..++ +|||-+|-||+.+.++.++||.|+.. +.-.|++||..-+|
T Consensus 774 ~vt~kAL~~Yka~r~D-------ELSFpk~aiItnv~keeg~wWrGdYG--g~iq~wfPsnyVee 829 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSD-------ELSFPKGAIITNVSKEEGGWWRGDYG--GRIQQWFPSNYVEE 829 (1267)
T ss_pred chhhhhhhccccCCcc-------cccccccceeEeeeccCCceeecccc--cceeeeccHHHhhh
Confidence 4779999999999887 59999999999999999999999983 23679999999888
No 82
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.91 E-value=0.0019 Score=60.21 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=63.1
Q ss_pred EecCcCChHHHHHHHhc-CCCC-ce-eeec-CCCchhhhh---------hhcccHHHHHH-HHHcCCeEEEEeccCCchh
Q psy6613 151 ITRVTADISLAKRSLMS-NPSK-RA-IMER-SNSRSSVLT---------EVQTEIERVYE-LASTLQLVVLDCDTINHPS 216 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~-F~-~sVs-hTTR~pFe~---------~I~TslesI~~-vi~sGKi~ILDID~qg~~l 216 (510)
+|++|+||||+.+.|.. .... .. ..+. ..-|..|.. +....+..+.+ +...|.+||.|.-. +.
T Consensus 13 ~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~~~~---~~ 89 (176)
T PRK05541 13 TGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVTTIS---MF 89 (176)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCC---cH
Confidence 89999999999998876 2211 11 1121 111221110 00011222333 44689999998532 12
Q ss_pred Hhhh----cCCCc-eEEEEeCCCHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCC---HHHHHHH
Q psy6613 217 QLAK----TNLSP-CIVYLKISSPKVLQRLIKSRG--KSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQ---LEDACEH 286 (510)
Q Consensus 217 q~lk----s~l~P-ivIFIkPPS~e~L~~rLr~Rg--t~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDd---Ld~A~~e 286 (510)
.-++ ..+.+ ++||+..| .+++.+|+.... ....+.+...+.+- ...|....|+||.|++ ++.++++
T Consensus 90 ~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~~~---~~~~~~~Ad~vI~~~~~~~~~~~v~~ 165 (176)
T PRK05541 90 DEIYAYNRKHLPNYFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVGVD---IPFDEPKADLVIDNSCRTSLDEKVDL 165 (176)
T ss_pred HHHHHHHHhhcCCeEEEEEeCC-HHHHHHhchhhHHHHHHcCcccccccCC---CcccCCCCCEEEeCCCCCCHHHHHHH
Confidence 2121 12333 45677655 677777764310 00000011011000 0123234699999874 5555555
Q ss_pred HHHHH
Q psy6613 287 IAEYL 291 (510)
Q Consensus 287 L~~il 291 (510)
+..++
T Consensus 166 i~~~l 170 (176)
T PRK05541 166 ILNKL 170 (176)
T ss_pred HHHHH
Confidence 55443
No 83
>KOG2546|consensus
Probab=96.90 E-value=0.00049 Score=73.38 Aligned_cols=49 Identities=27% Similarity=0.450 Sum_probs=44.1
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
|+|+|||.+..|+ +|+|..|-||+|+.++|++||.|-. ++-.||||.+.
T Consensus 426 Vv~iydy~~~Kdd-------eLsf~E~ailyv~kknddgw~EgV~---~~VTglFpgny 474 (483)
T KOG2546|consen 426 VVAIYDYTADKDD-------ELSFAEGAILYVLKKNDDGWYEGVQ---DGVTGLFPGNY 474 (483)
T ss_pred HHhhccccccccc-------ccccccccEEEEEEecCCcchhhee---cCcceeccCcc
Confidence 7899999999886 5999999999999999999999977 46799999765
No 84
>PLN02200 adenylate kinase family protein
Probab=96.90 E-value=0.015 Score=57.76 Aligned_cols=142 Identities=5% Similarity=0.074 Sum_probs=74.4
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc----cc----HHHHHHHHH--cCCeEEEEec
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ----TE----IERVYELAS--TLQLVVLDCD 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~----Ts----lesI~~vi~--sGKi~ILDID 210 (510)
+||+|+||+|+.++|.+..+...++...-=|.. +...+. .+ ...+.+.+. .+..+|||-.
T Consensus 49 ~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~~~ILDG~ 128 (234)
T PLN02200 49 LGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNKFLIDGF 128 (234)
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCeEEecCC
Confidence 899999999999999873222222221111211 001110 11 112232222 2456899988
Q ss_pred cCCchhHhhh---c--CCCc-eEEEEeCCCHHHHHHHHHhcCC----CcHHHHHHHHH----HHHHHHhcCCCCccEEEe
Q psy6613 211 TINHPSQLAK---T--NLSP-CIVYLKISSPKVLQRLIKSRGK----SQTRHLNVQMV----AAEKLAQCPQEMFDVILD 276 (510)
Q Consensus 211 ~qg~~lq~lk---s--~l~P-ivIFIkPPS~e~L~~rLr~Rgt----~~~e~i~kRL~----aa~eLEq~~~~~FD~VIv 276 (510)
|.. ..... . ...| ++||+..|. +++.+|+.+|+. ++.+.+.+|++ ..+.+.+.|...-.++.+
T Consensus 129 Prt--~~q~~~l~~~~~~~pd~vi~Ld~~~-e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~I 205 (234)
T PLN02200 129 PRT--EENRIAFERIIGAEPNVVLFFDCPE-EEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTI 205 (234)
T ss_pred ccc--HHHHHHHHHHhccCCCEEEEEECCH-HHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 765 33322 1 2345 566676654 667777777642 23455666662 223333433322233433
Q ss_pred C--CCHHHHHHHHHHHHHHHH
Q psy6613 277 E--NQLEDACEHIAEYLEAYW 295 (510)
Q Consensus 277 N--DdLd~A~~eL~~ileai~ 295 (510)
| .+.++.++++..++....
T Consensus 206 Da~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 206 NAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred ECCCCHHHHHHHHHHHHHHcC
Confidence 3 478988888886665444
No 85
>PRK13946 shikimate kinase; Provisional
Probab=96.89 E-value=0.018 Score=54.58 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=72.7
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCch-----h----hhh----hhc-ccHHHHHHHHHcCCeEEEEecc---CC
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRS-----S----VLT----EVQ-TEIERVYELASTLQLVVLDCDT---IN 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~-----p----Fe~----~I~-TslesI~~vi~sGKi~ILDID~---qg 213 (510)
+|.+|+||||+-+.|-+.- .+.+.-...... + |.. .+. ...+.+.+++..+. ||+.+.. ..
T Consensus 16 ~G~~GsGKsti~~~LA~~L-g~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~-~Vi~~ggg~~~~ 93 (184)
T PRK13946 16 VGLMGAGKSTVGRRLATML-GLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGP-LVLATGGGAFMN 93 (184)
T ss_pred ECCCCCCHHHHHHHHHHHc-CCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC-eEEECCCCCcCC
Confidence 8999999999999887621 121111111000 0 110 000 33456667776665 4555421 11
Q ss_pred -chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC------cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHH
Q psy6613 214 -HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS------QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDA 283 (510)
Q Consensus 214 -~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~------~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A 283 (510)
...+.++ -..++|||..| .+++.+|+..|..- ...+..+++ ..-..+ |. .+|++|..+ +++++
T Consensus 94 ~~~r~~l~--~~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~---y~-~~dl~i~~~~~~~~~~ 166 (184)
T PRK13946 94 EETRAAIA--EKGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEERYPV---YA-EADLTVASRDVPKEVM 166 (184)
T ss_pred HHHHHHHH--cCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH---HH-hCCEEEECCCCCHHHH
Confidence 0012222 24678999875 67788888776532 122333444 222222 32 378888544 46788
Q ss_pred HHHHHHHHHHHH
Q psy6613 284 CEHIAEYLEAYW 295 (510)
Q Consensus 284 ~~eL~~ileai~ 295 (510)
++.+.++|..+.
T Consensus 167 ~~~i~~~i~~~~ 178 (184)
T PRK13946 167 ADEVIEALAAYL 178 (184)
T ss_pred HHHHHHHHHHhh
Confidence 888887776654
No 86
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.84 E-value=0.014 Score=56.23 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=49.4
Q ss_pred CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCC-CH
Q psy6613 202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDEN-QL 280 (510)
Q Consensus 202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvND-dL 280 (510)
...|++|+..-- -.-+. .+.-.+|||..| .++-.+|+..|+..+.++..+|+....-++. ....-|+||.|+ ++
T Consensus 107 ~~~vv~e~pll~--E~~~~-~~~D~ii~V~a~-~e~r~~Rl~~R~g~s~e~~~~ri~~Q~~~~~-k~~~aD~vI~N~g~~ 181 (195)
T PRK14730 107 NPIVVLVIPLLF--EAKLT-DLCSEIWVVDCS-PEQQLQRLIKRDGLTEEEAEARINAQWPLEE-KVKLADVVLDNSGDL 181 (195)
T ss_pred CCEEEEEeHHhc--CcchH-hCCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHH-HHhhCCEEEECCCCH
Confidence 468888886532 00011 233467888876 4555556666654566677777722111111 124679999986 67
Q ss_pred HHHHHHHHHHH
Q psy6613 281 EDACEHIAEYL 291 (510)
Q Consensus 281 d~A~~eL~~il 291 (510)
++...++..++
T Consensus 182 e~l~~qv~~~l 192 (195)
T PRK14730 182 EKLYQQVDQLL 192 (195)
T ss_pred HHHHHHHHHHH
Confidence 77777777443
No 87
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.79 E-value=0.018 Score=59.48 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=75.8
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCch----h---hh---hhhc--ccHHHHHHHHHcCCeEEEEeccCCchhH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRS----S---VL---TEVQ--TEIERVYELASTLQLVVLDCDTINHPSQ 217 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~----p---Fe---~~I~--TslesI~~vi~sGKi~ILDID~qg~~lq 217 (510)
+|++|+||||+-+.|.+ .--.|.-......+. . |. .... ...+.+.+++.....+|+.... | ++.
T Consensus 139 ~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~Gg-g-~v~ 216 (309)
T PRK08154 139 IGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATGG-G-IVS 216 (309)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECCC-c-hhC
Confidence 99999999999999876 221122111000000 0 10 0001 3445567766655556666532 2 111
Q ss_pred h---hhc-CCCceEEEEeCCCHHHHHHHHHhcCCC----c---HHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHHH
Q psy6613 218 L---AKT-NLSPCIVYLKISSPKVLQRLIKSRGKS----Q---TRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLEDA 283 (510)
Q Consensus 218 ~---lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~----~---~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~A 283 (510)
. .+. .-..++|||..| .+++.+|+..++.. . ..+..+.+ ..-..+. ..+|++|.++ +++++
T Consensus 217 ~~~~~~~l~~~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y----~~ad~~I~t~~~s~ee~ 291 (309)
T PRK08154 217 EPATFDLLLSHCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLY----ARADAVVDTSGLTVAQS 291 (309)
T ss_pred CHHHHHHHHhCCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH----HhCCEEEECCCCCHHHH
Confidence 1 111 114578999876 77788888765421 1 11222333 2222222 2489999886 47899
Q ss_pred HHHHHHHHHHHHHh
Q psy6613 284 CEHIAEYLEAYWRA 297 (510)
Q Consensus 284 ~~eL~~ileai~~a 297 (510)
++++..++..+...
T Consensus 292 ~~~I~~~l~~~~~~ 305 (309)
T PRK08154 292 LARLRELVRPALGL 305 (309)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999777766543
No 88
>PRK14527 adenylate kinase; Provisional
Probab=96.78 E-value=0.019 Score=54.52 Aligned_cols=139 Identities=11% Similarity=0.056 Sum_probs=71.1
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----c----cHHHHHHHHHc--CCeEEEEec
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----T----EIERVYELAST--LQLVVLDCD 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----T----slesI~~vi~s--GKi~ILDID 210 (510)
+||+|+||+|+.+.|.+....-.++...--|. + ....+. . -...+.+.+.+ +..+|||--
T Consensus 12 ~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~~VlDGf 91 (191)
T PRK14527 12 LGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVRVIFDGF 91 (191)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCcEEEcCC
Confidence 99999999999999886111111111000010 0 000011 1 22333444443 456899976
Q ss_pred cCCchhHh--hh----c-CCCce-EEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHH----HHHHHHHhcCCCCcc
Q psy6613 211 TINHPSQL--AK----T-NLSPC-IVYLKISSPKVLQRLIKSRGK------SQTRHLNVQM----VAAEKLAQCPQEMFD 272 (510)
Q Consensus 211 ~qg~~lq~--lk----s-~l~Pi-vIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL----~aa~eLEq~~~~~FD 272 (510)
|.. ..+. +. . ...+. +||+..| .+++.+|+.+|+. ++.+.+.+|+ +....+...|.+.-=
T Consensus 92 pr~-~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~ 169 (191)
T PRK14527 92 PRT-LAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGH 169 (191)
T ss_pred CCC-HHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 644 2222 11 1 23454 4555554 5788888877652 3456677777 222334444433211
Q ss_pred -EEE-eCCCHHHHHHHHHHHH
Q psy6613 273 -VIL-DENQLEDACEHIAEYL 291 (510)
Q Consensus 273 -~VI-vNDdLd~A~~eL~~il 291 (510)
++| .+.+.++.++++..+|
T Consensus 170 ~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 170 LKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred EEEEECCCCHHHHHHHHHHhh
Confidence 223 3467999999888554
No 89
>PRK13947 shikimate kinase; Provisional
Probab=96.76 E-value=0.016 Score=53.34 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=66.5
Q ss_pred eE-EecCcCChHHHHHHHhc-CCCCceeeecCC---Cchh----hhhh----hc-ccHHHHHHHHHcCCeEEEEecc---
Q psy6613 149 II-ITRVTADISLAKRSLMS-NPSKRAIMERSN---SRSS----VLTE----VQ-TEIERVYELASTLQLVVLDCDT--- 211 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshT---TR~p----Fe~~----I~-TslesI~~vi~sGKi~ILDID~--- 211 (510)
++ +|++|+||||+.++|-+ ..-.|.-.-... +-.+ |+.. +. .....++++...+ .||+.+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~-~~vi~~g~g~v 82 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLK-NLVIATGGGVV 82 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcC-CeEEECCCCCc
Confidence 55 89999999999998876 322232111110 0001 1110 11 2333455554443 45554321
Q ss_pred ---CCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC---cHHHHHHHH-HHHHHHHhcCCCCccEEEeC--CCHHH
Q psy6613 212 ---INHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS---QTRHLNVQM-VAAEKLAQCPQEMFDVILDE--NQLED 282 (510)
Q Consensus 212 ---qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~---~~e~i~kRL-~aa~eLEq~~~~~FD~VIvN--DdLd~ 282 (510)
.. .+.++. ..++||+.. +.+.+.+|+..|+.. .......++ +.-.+....| ..+|++|.. .+.++
T Consensus 83 l~~~~--~~~l~~--~~~vv~L~~-~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y-~~ad~~Idt~~~~~~~ 156 (171)
T PRK13947 83 LNPEN--VVQLRK--NGVVICLKA-RPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFY-DFADYTIDTGDMTIDE 156 (171)
T ss_pred CCHHH--HHHHHh--CCEEEEEEC-CHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH-HhcCEEEECCCCCHHH
Confidence 11 222322 236889887 578888888765421 111222333 1111112222 246888874 46778
Q ss_pred HHHHHHH
Q psy6613 283 ACEHIAE 289 (510)
Q Consensus 283 A~~eL~~ 289 (510)
+++++.+
T Consensus 157 i~~~I~~ 163 (171)
T PRK13947 157 VAEEIIK 163 (171)
T ss_pred HHHHHHH
Confidence 8888774
No 90
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.73 E-value=0.015 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=51.8
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh------hhhhhc------------ccHHHHHHHHHc---CCeE
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------VLTEVQ------------TEIERVYELAST---LQLV 205 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------Fe~~I~------------TslesI~~vi~s---GKi~ 205 (510)
|++ +||+|+||||+.+.|.+......+++...-|.. ....+. .-.+-+...+.. ++.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 355 999999999999999873322233332222221 001110 112334444443 5778
Q ss_pred EEEeccCCchhHh---hhcCC----Cc-eEEEEeCCCHHHHHHHHHhcC
Q psy6613 206 VLDCDTINHPSQL---AKTNL----SP-CIVYLKISSPKVLQRLIKSRG 246 (510)
Q Consensus 206 ILDID~qg~~lq~---lks~l----~P-ivIFIkPPS~e~L~~rLr~Rg 246 (510)
|+|--|.. ... +...+ .| ++||+..| .+++.+|+..|+
T Consensus 81 vldg~Pr~--~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~ 126 (194)
T cd01428 81 ILDGFPRT--VDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRR 126 (194)
T ss_pred EEeCCCCC--HHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCC
Confidence 99976654 222 22211 34 45555554 678888887775
No 91
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.72 E-value=0.022 Score=53.77 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=71.8
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh---------hhh----hhc-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS---------VLT----EVQ-TEIERVYELASTLQLVVLDCDTI 212 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p---------Fe~----~I~-TslesI~~vi~sGKi~ILDID~q 212 (510)
+++ +||+|+||||+.+.|.... .+.+......+.. |+. .+. -..+.+.++...+ .+++.+...
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~-~~vi~~ggg 83 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQ-GIVLATGGG 83 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc-CCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCC-CEEEEcCCc
Confidence 354 9999999999999987621 2333333322221 110 000 2344555555544 455655321
Q ss_pred Cch-----hHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC------cHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC-
Q psy6613 213 NHP-----SQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS------QTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ- 279 (510)
Q Consensus 213 g~~-----lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~------~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd- 279 (510)
. + .+.++. .-++||+..| .+++.+|++.++.- ...+....| ..-. ..|....|++|.+++
T Consensus 84 ~-v~~~~~~~~l~~--~~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~---~~Y~~~Ad~~idt~~~ 156 (172)
T PRK05057 84 S-VKSRETRNRLSA--RGVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEALANERN---PLYEEIADVTIRTDDQ 156 (172)
T ss_pred h-hCCHHHHHHHHh--CCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHhhCCEEEECCCC
Confidence 1 1 122332 3478998886 67777777653211 112334444 2222 234456789997665
Q ss_pred -HHHHHHHHHHHH
Q psy6613 280 -LEDACEHIAEYL 291 (510)
Q Consensus 280 -Ld~A~~eL~~il 291 (510)
.++.++++.+.+
T Consensus 157 s~~ei~~~i~~~l 169 (172)
T PRK05057 157 SAKVVANQIIHML 169 (172)
T ss_pred CHHHHHHHHHHHH
Confidence 667777776544
No 92
>KOG3632|consensus
Probab=96.52 E-value=0.0021 Score=74.23 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=50.3
Q ss_pred cCCCeeEEEEeeccCCCCCCCCC-CCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613 43 AKNVAFAVRTNVKYDGSIDDDSP-VHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLENL 113 (510)
Q Consensus 43 ~k~~~~~VRAlfdY~~~~D~~iP-c~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~Err 113 (510)
+-|..+|| |+||||+-.=+-.| .-|-+|.|+.|+||.|... +-.++++|.. +++.|+||++..+|.-
T Consensus 1135 ~lparifV-AlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~---ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1135 ALPARIFV-ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGEL---NGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred cCcceeeE-eeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccc---cccccccccccccccc
Confidence 34556667 99999997643222 2345899999999999985 4457888876 6799999998887643
No 93
>KOG4575|consensus
Probab=96.52 E-value=0.0027 Score=70.63 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=48.5
Q ss_pred CCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 44 k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
+...|.|||+|.+.|+... .|.|..||+++++.-.|+-||.++..+. ...|++||+-
T Consensus 5 ~q~p~~vrA~y~w~ge~eG-------dl~f~egDlie~trI~dgkwwi~lhrNk-~~~g~fpsNF 61 (874)
T KOG4575|consen 5 KQLPCMVRALYAWPGEREG-------DLKFTEGDLIEQTRIEDGKWWILLHRNK-DEDGLFPSNF 61 (874)
T ss_pred cCCCceEEeeccCCCCccc-------ccceecccceeEEeeccceeeeeeeecc-cccccCcccc
Confidence 3457889999999999864 5999999999999999999999998643 4789999953
No 94
>KOG1029|consensus
Probab=96.50 E-value=0.0012 Score=74.58 Aligned_cols=53 Identities=23% Similarity=0.517 Sum_probs=45.7
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
.+..|+|.|.+..|.+ |+|.+||+|.|+++. +.||.|.. .|+.|+||+.+-.|
T Consensus 814 lq~iA~y~wrakke~d-------LsFskgd~I~Vlekq-emwW~G~v---~g~~GwFPksYVk~ 866 (1118)
T KOG1029|consen 814 LQAIALYPWRAKKEND-------LSFSKGDTITVLEKQ-EMWWFGEV---AGEIGWFPKSYVKE 866 (1118)
T ss_pred hhHHhhcccccccccc-------ccccCCCeeeeehhc-cceecccc---cCccCcCcHHhhhh
Confidence 4567999999998865 999999999999985 56999955 57899999988776
No 95
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.46 E-value=0.019 Score=54.50 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=34.9
Q ss_pred CceEEEEeCCCHHHHHHHHH----hcCCCcHHHHHHHH-HHHH----HHHhcCCCCccEEEeCCC-HHHHHH
Q psy6613 224 SPCIVYLKISSPKVLQRLIK----SRGKSQTRHLNVQM-VAAE----KLAQCPQEMFDVILDENQ-LEDACE 285 (510)
Q Consensus 224 ~PivIFIkPPS~e~L~~rLr----~Rgt~~~e~i~kRL-~aa~----eLEq~~~~~FD~VIvNDd-Ld~A~~ 285 (510)
.-++|||..|.-..+++|+. .||.+. +....++ .... +....+...+|+||.|++ .+.+..
T Consensus 119 ~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~-~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~ 189 (198)
T cd02023 119 MDLKIFVDTDADVRLIRRIERDIVERGRDL-ESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAID 189 (198)
T ss_pred cCeEEEEECChhHHHHHHHHHHhhhcCCCH-HHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHH
Confidence 34789999987666776663 345432 3333444 2222 112335678999998654 444444
No 96
>PRK13974 thymidylate kinase; Provisional
Probab=96.45 E-value=0.034 Score=54.07 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=50.9
Q ss_pred HHHHHHcCCeEEEEecc------CCch-------hHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH
Q psy6613 195 VYELASTLQLVVLDCDT------INHP-------SQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM 257 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~------qg~~-------lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL 257 (510)
|...+..|++||.|=-+ +|.+ +..+.. .+.|-++|..=-+.+++.+|+..|+.+.-+......
T Consensus 88 i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y 167 (212)
T PRK13974 88 IRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIEAEGIEF 167 (212)
T ss_pred HHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchhhhhHHH
Confidence 56667889998866421 1100 112211 245655554444577888888777654333222222
Q ss_pred -HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHH
Q psy6613 258 -VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAY 294 (510)
Q Consensus 258 -~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai 294 (510)
..-.+....|....-++.+ +.+.++.++++..+|...
T Consensus 168 ~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 168 LERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN 207 (212)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2222221111111233333 346888889998777654
No 97
>KOG0197|consensus
Probab=96.42 E-value=0.00083 Score=73.10 Aligned_cols=57 Identities=25% Similarity=0.441 Sum_probs=49.4
Q ss_pred EEEEeeccCCCCCCCCCCCCccccccCCce-EEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613 49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEF-LHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL 113 (510)
Q Consensus 49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDi-L~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err 113 (510)
.+-|+|||.+..+. .|+|.+||+ ++|+++.+.+||.+|... .+..|+||++...+.+
T Consensus 13 ~~valyd~~s~~~~-------dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~-~~~~g~ip~N~v~~~~ 70 (468)
T KOG0197|consen 13 IVVALYDYASRTPE-------DLSFRKGDVVLILLETTNGDWWRARSLQ-LGQEGYIPSNYVARNR 70 (468)
T ss_pred eEEEeccccCCCcc-------ccccccCceEEEeeccCChhHHHHHHhh-cCCCCcCcCceeeccc
Confidence 35599999999865 499999999 999999999999999864 4688999999988763
No 98
>PRK14526 adenylate kinase; Provisional
Probab=96.35 E-value=0.06 Score=52.87 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=75.9
Q ss_pred eE-EecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc--------ccHHHHHHHHH---cCCeEE
Q psy6613 149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ--------TEIERVYELAS---TLQLVV 206 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~--------TslesI~~vi~---sGKi~I 206 (510)
++ +||+|+||+|+.+.|........++.-.--|. + ....+. .-.+-|.+.++ .++..|
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~i 82 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFI 82 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEE
Confidence 44 99999999999998876221111111111111 1 111111 11222333332 246688
Q ss_pred EEeccCCchhHhhhc--C-C-CceEEEEeCCCHHHHHHHHHhcC---------------------------------CCc
Q psy6613 207 LDCDTINHPSQLAKT--N-L-SPCIVYLKISSPKVLQRLIKSRG---------------------------------KSQ 249 (510)
Q Consensus 207 LDID~qg~~lq~lks--~-l-~PivIFIkPPS~e~L~~rLr~Rg---------------------------------t~~ 249 (510)
||-=|.. ...... . + ...+|++..| .+++.+|+.+|. .++
T Consensus 83 lDGfPR~--~~Qa~~l~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 83 LDGFPRN--INQAKALDKFLPNIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred EECCCCC--HHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 8987766 444443 2 2 2456666654 578888877653 344
Q ss_pred HHHHHHHH----HHHHHHHhcCCC--CccEEEeCCCHHHHHHHHHHHHH
Q psy6613 250 TRHLNVQM----VAAEKLAQCPQE--MFDVILDENQLEDACEHIAEYLE 292 (510)
Q Consensus 250 ~e~i~kRL----~aa~eLEq~~~~--~FD~VIvNDdLd~A~~eL~~ile 292 (510)
.+.+.+|| +....+...|.. .+-.|=-+.+.++.+++|..+|+
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~ 208 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS 208 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 67888888 222334444432 22222234678999999986664
No 99
>PRK02496 adk adenylate kinase; Provisional
Probab=96.34 E-value=0.054 Score=50.82 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=71.1
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchhh----------hhhhc----cc----HHHHHHHHH---cCCe
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSV----------LTEVQ----TE----IERVYELAS---TLQL 204 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pF----------e~~I~----Ts----lesI~~vi~---sGKi 204 (510)
|++ +||+|+||||+.+.|.+ +. .-.++....-|..+ ...+. .+ .+-+.+.+. ....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~-~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH-IPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 455 99999999999998876 32 11222111112110 00010 11 122233222 2345
Q ss_pred EEEEeccCCchhHh--hhc-----CCCceE-EEEeCCCHHHHHHHHHhcCCC--cHHHHHHHHHHH----HHHHhcCCCC
Q psy6613 205 VVLDCDTINHPSQL--AKT-----NLSPCI-VYLKISSPKVLQRLIKSRGKS--QTRHLNVQMVAA----EKLAQCPQEM 270 (510)
Q Consensus 205 ~ILDID~qg~~lq~--lks-----~l~Piv-IFIkPPS~e~L~~rLr~Rgt~--~~e~i~kRL~aa----~eLEq~~~~~ 270 (510)
.|||--|.. ..+. +.. ...|.. ||+.+ +.+++.+|+..|+.. ..+.+.+|+..= ..+...|...
T Consensus 82 ~vldGfPr~-~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~ 159 (184)
T PRK02496 82 WILDGFPRK-VTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDR 159 (184)
T ss_pred EEEeCCCCC-HHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788877654 2221 111 234544 55555 588899999888753 345566666221 2233333222
Q ss_pred ccEEEeC--CCHHHHHHHHHHHH
Q psy6613 271 FDVILDE--NQLEDACEHIAEYL 291 (510)
Q Consensus 271 FD~VIvN--DdLd~A~~eL~~il 291 (510)
--++.++ .++++.++++..+|
T Consensus 160 ~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 160 QKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 2234443 56888888777443
No 100
>KOG1843|consensus
Probab=96.32 E-value=0.002 Score=68.67 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=42.8
Q ss_pred EEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC--CCceEEEEccCCCceeeecChh
Q psy6613 49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD--SNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d--~~WWqar~v~~~~~~GlIPS~~ 108 (510)
.+.|+|+|.+..-. .|+|++||||.|+++.+ ++||.|+. ++..|++|-+.
T Consensus 418 ~a~a~ysfage~~G-------Dl~f~kgDii~il~ks~s~~dwwtgr~---~~~egifPany 469 (473)
T KOG1843|consen 418 IATALYSFAGEQPG-------DLSFQKGDIITILKKSDSANDWWTGRG---NGYEGIFPANY 469 (473)
T ss_pred eeeeeehhccCCCC-------CcccccCceEEEecCCcchhhHHHhhc---cccccccccce
Confidence 57899999998765 48999999999999865 58999997 57899999764
No 101
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.041 Score=52.77 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=70.7
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----------hhhhhc------------ccHHHHHHHHHcC-
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----------VLTEVQ------------TEIERVYELASTL- 202 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----------Fe~~I~------------TslesI~~vi~sG- 202 (510)
|++ +||+|+||+|+.++|.+. +.++|-+.-- +...++ .-...|.+-+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~-----~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK-----LGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-----hCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 444 999999999999999882 1255544211 111111 1112222222222
Q ss_pred --CeEEEEeccCCchhHh---hhc---C---CCceEEEEeCCCHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhcCC
Q psy6613 203 --QLVVLDCDTINHPSQL---AKT---N---LSPCIVYLKISSPKVLQRLIKSRG---KSQTRHLNVQMVAAEKLAQCPQ 268 (510)
Q Consensus 203 --Ki~ILDID~qg~~lq~---lks---~---l~PivIFIkPPS~e~L~~rLr~Rg---t~~~e~i~kRL~aa~eLEq~~~ 268 (510)
..+|+|--|.. +.+ ++. . -...++.+..|. +.+-.|+..|. .+..+.+.+|+..-++-..---
T Consensus 77 ~~~~~I~dg~PR~--~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli 153 (178)
T COG0563 77 CKAGFILDGFPRT--LCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLI 153 (178)
T ss_pred ccCeEEEeCCCCc--HHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccccccCCHHHHHHHHHHHHhcccchh
Confidence 26777777655 333 332 1 124678888888 88888887764 3455667777722222111111
Q ss_pred CCccEEEe-CCCHHHHHHHHHH
Q psy6613 269 EMFDVILD-ENQLEDACEHIAE 289 (510)
Q Consensus 269 ~~FD~VIv-NDdLd~A~~eL~~ 289 (510)
.+|.+.|. ...+++.++++..
T Consensus 154 ~~y~~~id~~~~i~~v~~~i~~ 175 (178)
T COG0563 154 EYYSVTIDGSGEIEEVLADILK 175 (178)
T ss_pred hhheeeccCCCCHHHHHHHHHH
Confidence 23333333 2446666666653
No 102
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.31 E-value=0.041 Score=49.36 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=62.0
Q ss_pred EEecCcCChHHHHHHHhc-CCCCceeeecC----CCch--h-hhhh---hc--ccHHHHHHHHHcCCeEEEEeccCCchh
Q psy6613 150 IITRVTADISLAKRSLMS-NPSKRAIMERS----NSRS--S-VLTE---VQ--TEIERVYELASTLQLVVLDCDTINHPS 216 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVsh----TTR~--p-Fe~~---I~--TslesI~~vi~sGKi~ILDID~qg~~l 216 (510)
|+|++|+||+|+.+.|.+ ..-.|--.-.. +... . |+.. .. ...+.+..+...+ .+|++..... ..
T Consensus 4 l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~vi~~g~~~-i~ 81 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKE-NAVIATGGGA-VL 81 (154)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccC-CcEEECCCCc-cC
Confidence 389999999999999876 32222111100 0000 0 1100 00 2223445555555 5566543211 11
Q ss_pred Hh--hhc-CCCceEEEEeCCCHHHHHHHHHhcCC-----CcH-HHHHHHHHHHHHHHhcCCCCccEEEeCCCH
Q psy6613 217 QL--AKT-NLSPCIVYLKISSPKVLQRLIKSRGK-----SQT-RHLNVQMVAAEKLAQCPQEMFDVILDENQL 280 (510)
Q Consensus 217 q~--lks-~l~PivIFIkPPS~e~L~~rLr~Rgt-----~~~-e~i~kRL~aa~eLEq~~~~~FD~VIvNDdL 280 (510)
.. .+. .-.-++|||..| .+++.+|+..|+. ... +.....+..-.+ .|....|++|..+++
T Consensus 82 ~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~---~Y~~~ad~~i~~~~~ 150 (154)
T cd00464 82 REENRRLLLENGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLEEREP---LYREVADLTIDTDEL 150 (154)
T ss_pred cHHHHHHHHcCCeEEEEeCC-HHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHH---HHHHhCcEEEECCCC
Confidence 11 111 224578999887 8888888877631 111 122222232222 233458999987765
No 103
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.31 E-value=0.029 Score=52.99 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=40.7
Q ss_pred CeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC
Q psy6613 203 QLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ 279 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd 279 (510)
..+|+|+..-- + ... .+.-.+|||..|.... .+|+..|+..+.++...|+ .+...-+ +....|+||.|+.
T Consensus 104 ~~vive~plL~---e-~~~~~~~D~vv~V~a~~~~r-i~Rl~~Rd~~s~~~~~~r~~~Q~~~~~--~~~~aD~vI~N~~ 175 (179)
T cd02022 104 KVVVLDIPLLF---E-TGLEKLVDRVIVVDAPPEIQ-IERLMKRDGLSEEEAEARIASQMPLEE--KRARADFVIDNSG 175 (179)
T ss_pred CEEEEEehHhh---c-CCcHHhCCeEEEEECCHHHH-HHHHHHcCCCCHHHHHHHHHhcCCHHH--HHHhCCEEEECcC
Confidence 57888875421 1 111 2345779999875544 4455556555667777777 3221111 2357799999974
No 104
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.30 E-value=0.099 Score=51.36 Aligned_cols=85 Identities=9% Similarity=0.182 Sum_probs=51.1
Q ss_pred CCeEEEEeccCCchhHh-hh-cCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HH---HHHHHhcCCCCccEEE
Q psy6613 202 LQLVVLDCDTINHPSQL-AK-TNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VA---AEKLAQCPQEMFDVIL 275 (510)
Q Consensus 202 GKi~ILDID~qg~~lq~-lk-s~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~a---a~eLEq~~~~~FD~VI 275 (510)
...|++|+..-- +. .+ ..+.-.+|+|..|--..+++. ..|+.-+.++...|+ .+ .++++ .-|+||
T Consensus 108 ~~~vv~eipLL~---E~~~~~~~~~D~vi~V~a~~e~ri~Rl-~~Rd~~s~~~a~~ri~~Q~~~eek~~-----~aD~VI 178 (204)
T PRK14733 108 TVMTIVDIPLLG---PYNFRHYDYLKKVIVIKADLETRIRRL-MERDGKNRQQAVAFINLQISDKEREK-----IADFVI 178 (204)
T ss_pred CCeEEEEechhh---hccCchhhhCCEEEEEECCHHHHHHHH-HHcCCCCHHHHHHHHHhCCCHHHHHH-----hCCEEE
Confidence 357888885421 11 00 122345788887755555544 445444566777777 22 22333 449999
Q ss_pred eCCC--HHHHHHHHHHHHHHHH
Q psy6613 276 DENQ--LEDACEHIAEYLEAYW 295 (510)
Q Consensus 276 vNDd--Ld~A~~eL~~ileai~ 295 (510)
.|+. ++..-.++.++++.+-
T Consensus 179 ~N~g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 179 DNTELTDQELESKLITTINEIT 200 (204)
T ss_pred ECcCCCHHHHHHHHHHHHHHHH
Confidence 9865 6888888887777663
No 105
>PRK13973 thymidylate kinase; Provisional
Probab=96.28 E-value=0.071 Score=51.85 Aligned_cols=103 Identities=13% Similarity=-0.023 Sum_probs=56.2
Q ss_pred HHHHHHHcCCeEEEEecc------CCc-------hhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCc----HH-
Q psy6613 194 RVYELASTLQLVVLDCDT------INH-------PSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQ----TR- 251 (510)
Q Consensus 194 sI~~vi~sGKi~ILDID~------qg~-------~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~----~e- 251 (510)
.|...+++|++||+|=-. ||. .+..+.. .+.|=.||+.=-+.+++.+|+..|+... .+
T Consensus 81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~ 160 (213)
T PRK13973 81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEK 160 (213)
T ss_pred HHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhh
Confidence 367778899999999654 220 0112211 1346444444445778888887775422 11
Q ss_pred ---HHHHHH-HHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHH
Q psy6613 252 ---HLNVQM-VAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWR 296 (510)
Q Consensus 252 ---~i~kRL-~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~ 296 (510)
+..++. +.-.++...+++.|..|=-+.++++.+.++..+|..++.
T Consensus 161 ~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 161 EDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 122222 333334333433332222346689999999988877655
No 106
>PRK13976 thymidylate kinase; Provisional
Probab=96.20 E-value=0.044 Score=53.66 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=77.2
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchh----hhhhhc-----------------------ccH-HHHHHHHHc
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS----VLTEVQ-----------------------TEI-ERVYELAST 201 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p----Fe~~I~-----------------------Tsl-esI~~vi~s 201 (510)
-|.-|+||||+.+.|.+ ....++..-.++||.| +-+.|. -.+ +.|...+++
T Consensus 6 EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p~l~~ 85 (209)
T PRK13976 6 EGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILPALLQ 85 (209)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 69999999999998876 2221121111244544 111110 122 235666789
Q ss_pred CCeEEEEeccCCch-------------hHhhhc---CCCc-eEEEEeCCCHHHHHHHHHhcCCCc-HHHHHHHH-HHHHH
Q psy6613 202 LQLVVLDCDTINHP-------------SQLAKT---NLSP-CIVYLKISSPKVLQRLIKSRGKSQ-TRHLNVQM-VAAEK 262 (510)
Q Consensus 202 GKi~ILDID~qg~~-------------lq~lks---~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~-~e~i~kRL-~aa~e 262 (510)
|++||.|=-+.++. +..+.. .+.| ++||+.. +.++..+|++.++-+. ..+-..++ ++=.+
T Consensus 86 G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv-~~e~a~~Ri~~~~~e~~~~~~l~~v~~~Y~~ 164 (209)
T PRK13976 86 GKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDI-DIELSLSRADKNGYEFMDLEFYDKVRKGFRE 164 (209)
T ss_pred CCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeC-CHHHHHHHhcccchhcccHHHHHHHHHHHHH
Confidence 99999995432211 111111 1245 4555555 5677777776554332 23444556 44455
Q ss_pred HHhcCCCCccEEEeC---CC---HHHHHHHHHHHHHHHH
Q psy6613 263 LAQCPQEMFDVILDE---NQ---LEDACEHIAEYLEAYW 295 (510)
Q Consensus 263 LEq~~~~~FD~VIvN---Dd---Ld~A~~eL~~ileai~ 295 (510)
+...+++.|..+--+ ++ +++..+++.++|....
T Consensus 165 l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 165 IVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred HHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 655554444444331 24 8888888887776554
No 107
>PRK13949 shikimate kinase; Provisional
Probab=96.19 E-value=0.051 Score=51.26 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=17.4
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+||||+.+.|-+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 455 99999999999998876
No 108
>PLN02842 nucleotide kinase
Probab=96.15 E-value=0.11 Score=57.57 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=77.6
Q ss_pred eEEecCcCChHHHHHHHhcCCCCceeeecCCCch------h----hhhhhc----ccHHHHHH----HHH----cCCeEE
Q psy6613 149 IIITRVTADISLAKRSLMSNPSKRAIMERSNSRS------S----VLTEVQ----TEIERVYE----LAS----TLQLVV 206 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~------p----Fe~~I~----TslesI~~----vi~----sGKi~I 206 (510)
+|+||.|+||+|++++|-+......++....-|. + ..+.+. ++-+.+.. -+. ..+-.|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 3589999999999999887222222221111121 0 001111 12122211 111 123477
Q ss_pred EEeccCCchhHhhh---c-CCCc-eEEEEeCCCHHHHHHHHHhcC-----------------------------CCcHHH
Q psy6613 207 LDCDTINHPSQLAK---T-NLSP-CIVYLKISSPKVLQRLIKSRG-----------------------------KSQTRH 252 (510)
Q Consensus 207 LDID~qg~~lq~lk---s-~l~P-ivIFIkPPS~e~L~~rLr~Rg-----------------------------t~~~e~ 252 (510)
||--|.. ....+ . ...| ++||+..|. +++.+|+.+|. .++.+.
T Consensus 81 LDGfPRt--~~Qa~~Le~~~~~PDlVI~LDvpd-evlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~ 157 (505)
T PLN02842 81 LDGYPRS--FAQAQSLEKLKIRPDIFILLDVPD-EILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEK 157 (505)
T ss_pred EeCCCCc--HHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHH
Confidence 7876665 33332 2 2345 566666654 56666665442 345678
Q ss_pred HHHHH-H---HHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHhc
Q psy6613 253 LNVQM-V---AAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRAT 298 (510)
Q Consensus 253 i~kRL-~---aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a~ 298 (510)
+.+|| . ....+...|++.+..|=.+.+.++.++++..+|..+....
T Consensus 158 IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~ 207 (505)
T PLN02842 158 VKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDA 207 (505)
T ss_pred HHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence 88998 2 2334455665543221123569999999998887665443
No 109
>PRK13948 shikimate kinase; Provisional
Probab=96.12 E-value=0.074 Score=51.18 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=69.3
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh---------hhhh----hc-ccHHHHHHHHHcCCeEEEEe------c
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS---------VLTE----VQ-TEIERVYELASTLQLVVLDC------D 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p---------Fe~~----I~-TslesI~~vi~sGKi~ILDI------D 210 (510)
+|.+|+||||+-+.|-+.- .+.+.-+..-+.. |... +. -..+.+.+++..+. +|+.+ +
T Consensus 16 iG~~GsGKSTvg~~La~~l-g~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~-~VIa~GgG~v~~ 93 (182)
T PRK13948 16 AGFMGTGKSRIGWELSRAL-MLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDY-AVISLGGGTFMH 93 (182)
T ss_pred ECCCCCCHHHHHHHHHHHc-CCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC-eEEECCCcEEcC
Confidence 9999999999999887621 1222222221111 1110 00 34445666665543 45553 2
Q ss_pred cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcC--CC---cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC--CHHH
Q psy6613 211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRG--KS---QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN--QLED 282 (510)
Q Consensus 211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rg--t~---~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND--dLd~ 282 (510)
+.+ .+.++. ...+||+. -+.++|.+|+...+ .- ...+...++ ++-..+ | ...|++|.++ +.++
T Consensus 94 ~~n--~~~l~~--~g~vV~L~-~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~---Y-~~a~~~i~t~~~~~~e 164 (182)
T PRK13948 94 EEN--RRKLLS--RGPVVVLW-ASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPV---Y-RQATIHVSTDGRRSEE 164 (182)
T ss_pred HHH--HHHHHc--CCeEEEEE-CCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHH---H-HhCCEEEECCCCCHHH
Confidence 222 233332 35688888 45789999985432 11 111112222 322222 3 2368899765 4778
Q ss_pred HHHHHHHHHHH
Q psy6613 283 ACEHIAEYLEA 293 (510)
Q Consensus 283 A~~eL~~ilea 293 (510)
.++++.+.+..
T Consensus 165 i~~~i~~~l~~ 175 (182)
T PRK13948 165 VVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHHHHH
Confidence 88887755544
No 110
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.03 E-value=0.064 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=17.9
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
+.+| .|+.|+||||+.++|.+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 4444 89999999999999887
No 111
>PLN02459 probable adenylate kinase
Probab=95.98 E-value=0.099 Score=53.39 Aligned_cols=141 Identities=10% Similarity=0.025 Sum_probs=77.4
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc-----CC
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST-----LQ 203 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s-----GK 203 (510)
++| +||+|+||+|+..+|.+....-.++....-|.- ....+. .-..-|.+-+.+ .+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~ 110 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGES 110 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCc
Confidence 344 999999999999999872222222222222221 111111 222333333332 36
Q ss_pred eEEEEeccCCchhHhhhc--C-CC-ceEEEEeCCCHHHHHHHHHhc----------------------------------
Q psy6613 204 LVVLDCDTINHPSQLAKT--N-LS-PCIVYLKISSPKVLQRLIKSR---------------------------------- 245 (510)
Q Consensus 204 i~ILDID~qg~~lq~lks--~-l~-PivIFIkPPS~e~L~~rLr~R---------------------------------- 245 (510)
-.|||-=|.. ..+.+. . .. -.+|++..| -++|.+|+.+|
T Consensus 111 g~iLDGFPRt--~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~ 187 (261)
T PLN02459 111 GFILDGFPRT--VRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP 187 (261)
T ss_pred eEEEeCCCCC--HHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence 6899998877 554443 2 22 357777777 46677776654
Q ss_pred ----------CCCcHHHHHHHH----HHHHHHHhcCCCCccEEE--eCCCHHHHHHHHHHHH
Q psy6613 246 ----------GKSQTRHLNVQM----VAAEKLAQCPQEMFDVIL--DENQLEDACEHIAEYL 291 (510)
Q Consensus 246 ----------gt~~~e~i~kRL----~aa~eLEq~~~~~FD~VI--vNDdLd~A~~eL~~il 291 (510)
..++.+.+.+|| +....+...|.+.-=++. .+.++++.+++|..+|
T Consensus 188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l 249 (261)
T PLN02459 188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQAL 249 (261)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHh
Confidence 234457788888 222334444433211222 3457888888888443
No 112
>PRK12338 hypothetical protein; Provisional
Probab=95.97 E-value=0.1 Score=54.65 Aligned_cols=95 Identities=9% Similarity=0.154 Sum_probs=54.2
Q ss_pred HHHHHcCCeEEEEeccCCchhHhhh-c---CCCceEEEEeCCCHHHHHHHHHhcCCCcHH--HH---HHHH--HHHHHHH
Q psy6613 196 YELASTLQLVVLDCDTINHPSQLAK-T---NLSPCIVYLKISSPKVLQRLIKSRGKSQTR--HL---NVQM--VAAEKLA 264 (510)
Q Consensus 196 ~~vi~sGKi~ILDID~qg~~lq~lk-s---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e--~i---~kRL--~aa~eLE 264 (510)
...++.|..+|++--.-- | ..++ . .-.++..|+.-|+.+..++|...|...... .- ...+ -...-++
T Consensus 99 ~r~~~~g~svIiEGvhl~-P-~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~ 176 (319)
T PRK12338 99 ERAVTDSDDIVIEGVHLV-P-GLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDHLVE 176 (319)
T ss_pred HHHhcCCCeEEEEecccc-H-HHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHHHHH
Confidence 334568989999865432 1 2222 1 112455555568999999998885532210 00 1111 1111122
Q ss_pred hcCCCCccEE-EeCCCHHHHHHHHHHHHHHH
Q psy6613 265 QCPQEMFDVI-LDENQLEDACEHIAEYLEAY 294 (510)
Q Consensus 265 q~~~~~FD~V-IvNDdLd~A~~eL~~ileai 294 (510)
+ ...++.. |.|+|+|+|++++.++|..+
T Consensus 177 ~--A~e~~VpvI~N~did~Tv~~ile~I~e~ 205 (319)
T PRK12338 177 Q--AREHNVPVIKNDDIDCTVKKMLSYIREV 205 (319)
T ss_pred h--HhhCCCceeCCCcHHHHHHHHHHHHHhh
Confidence 2 2455666 68999999999999887644
No 113
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.94 E-value=0.12 Score=45.65 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=58.9
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhh---------hc-ccHHHHHHHHHcCCeEEEEeccCCchhHhh
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTE---------VQ-TEIERVYELASTLQLVVLDCDTINHPSQLA 219 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~---------I~-TslesI~~vi~sGKi~ILDID~qg~~lq~l 219 (510)
+|++|+||||+.+.|.. ..-.|. ....-....+... +. .....+.++.. +..||+|...-+ . .+
T Consensus 5 ~G~~GsGKst~a~~la~~~~~~~~-~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~Vidg~~~~--~-~~ 79 (147)
T cd02020 5 DGPAGSGKSTVAKLLAKKLGLPYL-DTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAK-KPGIVLEGRDIG--T-VV 79 (147)
T ss_pred ECCCCCCHHHHHHHHHHHhCCcee-ccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhh-CCCEEEEeeeee--e-EE
Confidence 89999999999999987 321111 1111111111110 01 11122333333 456888865433 1 11
Q ss_pred hcCCCceEEEEeCCCHHHHHHHHH---h-cCCCcHHHHHHHHHHHHHHH-hcC-----CCCccEEEeC
Q psy6613 220 KTNLSPCIVYLKISSPKVLQRLIK---S-RGKSQTRHLNVQMVAAEKLA-QCP-----QEMFDVILDE 277 (510)
Q Consensus 220 ks~l~PivIFIkPPS~e~L~~rLr---~-Rgt~~~e~i~kRL~aa~eLE-q~~-----~~~FD~VIvN 277 (510)
....-++|||..|-...++++.+ . +...+.+++.+++....+-+ ..| ...||.+|..
T Consensus 80 -~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 80 -FPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred -cCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence 12234678888775555454444 1 33345667777773333221 222 3456666643
No 114
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.93 E-value=0.061 Score=51.63 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCC-ceeeecCC---Cchh--------------------hhhhhcccHHHHHHHH
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSK-RAIMERSN---SRSS--------------------VLTEVQTEIERVYELA 199 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~-F~~sVshT---TR~p--------------------Fe~~I~TslesI~~vi 199 (510)
+++| =|+|.+|||||.+.|.+ .+.- +.+++-+= ..+. |...+..-...|...+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3555 59999999999999988 6654 44443210 1111 1111125567888899
Q ss_pred HcCCeEEEEeccCCch--hHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-hcCCCCccE
Q psy6613 200 STLQLVVLDCDTINHP--SQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLA-QCPQEMFDV 273 (510)
Q Consensus 200 ~sGKi~ILDID~qg~~--lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLE-q~~~~~FD~ 273 (510)
+.|..||+|-=..+-. .+.++. .+..++|=|.+| .++|++|-+.||.-..- .+....+ -+.+..||+
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G------~a~~q~~~Vh~~~~YDl 153 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIG------LAAWQAEHVHEGGRYDL 153 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTT------HHHHHTTGGGTT---SE
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchH------HHHHHHhhcccCCCCCE
Confidence 9999999993322211 234433 445566777776 88999999998852111 2222223 233567999
Q ss_pred EEeC--CCHHHHHHHHHHHH
Q psy6613 274 ILDE--NQLEDACEHIAEYL 291 (510)
Q Consensus 274 VIvN--DdLd~A~~eL~~il 291 (510)
.|.. .+.++|.+++.+.+
T Consensus 154 eVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 154 EVDTSATSPEECAREILARL 173 (174)
T ss_dssp EEETTSS-HHHHHHHHHTT-
T ss_pred EEECCCCCHHHHHHHHHHHh
Confidence 9975 45777777776443
No 115
>PRK06696 uridine kinase; Validated
Probab=95.90 E-value=0.023 Score=55.50 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+||||+.++|.+
T Consensus 28 ~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 28 DGITASGKTTFADELAE 44 (223)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999887
No 116
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.87 E-value=0.011 Score=50.79 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=51.2
Q ss_pred EEecCcCChHHHHHHHhcCCC----------CceeeecCC---Cchh-hhhhhc-ccHHHHHH---HHHcCCeEEEEecc
Q psy6613 150 IITRVTADISLAKRSLMSNPS----------KRAIMERSN---SRSS-VLTEVQ-TEIERVYE---LASTLQLVVLDCDT 211 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~----------~F~~sVshT---TR~p-Fe~~I~-TslesI~~---vi~sGKi~ILDID~ 211 (510)
|.|++|+|||||.+.|.+.-. .+.....+. .... +..+.. .-+..+.+ ....+..+|+|-..
T Consensus 3 i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~ 82 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDGIL 82 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEeccc
Confidence 389999999999998877210 001111110 0000 000000 12222222 35678999999876
Q ss_pred CCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHH
Q psy6613 212 INHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR 251 (510)
Q Consensus 212 qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e 251 (510)
.. ........... |||..|. +++.+|+..|+.....
T Consensus 83 ~~--~~~~~~~~~~~-i~L~~~~-e~~~~R~~~R~~~~~~ 118 (129)
T PF13238_consen 83 SN--LELERLFDIKF-IFLDCSP-EELRKRLKKRGRKEEK 118 (129)
T ss_dssp EE--ECETTEEEESS-EEEE--H-HHHHHHHHCTTTSCHH
T ss_pred ch--hcccccceeeE-EEEECCH-HHHHHHHHhCCCCCCC
Confidence 44 11111111111 8888876 9999999999877643
No 117
>PLN02674 adenylate kinase
Probab=95.74 E-value=0.15 Score=51.43 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc---CCe
Q psy6613 147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST---LQL 204 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s---GKi 204 (510)
.+++ +||+|+||+|+.++|.++..-..++.-..=|.- ..+.+. .-.+-|.+.+.+ ++-
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g 111 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKG 111 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCc
Confidence 4566 999999999999999873222222211111111 001111 222334444433 466
Q ss_pred EEEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc------------------------------
Q psy6613 205 VVLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR------------------------------ 245 (510)
Q Consensus 205 ~ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R------------------------------ 245 (510)
.|||-=|.. ....+. ...+ .+||+..| -+++.+|+.+|
T Consensus 112 ~ilDGfPRt--~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L 188 (244)
T PLN02674 112 FILDGFPRT--VVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 188 (244)
T ss_pred EEEeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence 899988866 333331 2333 46777765 56777777665
Q ss_pred ---CCCcHHHHHHHH-H---HHHHHHhcCCC--CccEEEeCCCHHHHHHHHHHHH
Q psy6613 246 ---GKSQTRHLNVQM-V---AAEKLAQCPQE--MFDVILDENQLEDACEHIAEYL 291 (510)
Q Consensus 246 ---gt~~~e~i~kRL-~---aa~eLEq~~~~--~FD~VIvNDdLd~A~~eL~~il 291 (510)
..++.+.+.+|| . ....+...|.. .+-.|=.+.+.++.++++..+|
T Consensus 189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 223467788888 2 22234444432 2211113457888888877443
No 118
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.68 E-value=0.15 Score=52.66 Aligned_cols=125 Identities=22% Similarity=0.197 Sum_probs=60.9
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHc-----CCeEEEEeccCCc------hhHhh
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELAST-----LQLVVLDCDTINH------PSQLA 219 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~s-----GKi~ILDID~qg~------~lq~l 219 (510)
+|++|+||||+.+.|-.. .| +++ ...... .+..+.+.+.+ .-.+++|+-..+. .+..+
T Consensus 12 ~G~~GsGKtt~~~~l~~~--g~-~~~-d~~~~~-------L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L 80 (288)
T PRK05416 12 TGLSGAGKSVALRALEDL--GY-YCV-DNLPPS-------LLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDEL 80 (288)
T ss_pred ECCCCCcHHHHHHHHHHc--CC-eEE-CCcCHH-------HHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHH
Confidence 899999999999988532 12 122 221111 11222222222 2356666642220 12222
Q ss_pred hc-CCCceEEEEeCCCHHHHHHHHHhcC----CCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC--HHHHHHHHH
Q psy6613 220 KT-NLSPCIVYLKISSPKVLQRLIKSRG----KSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ--LEDACEHIA 288 (510)
Q Consensus 220 ks-~l~PivIFIkPPS~e~L~~rLr~Rg----t~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd--Ld~A~~eL~ 288 (510)
+. .....+||+..+ .++|.+|+..+. ..........+ ...+.++.. ....|++|.+++ .++..+++.
T Consensus 81 ~~~g~~~~iI~L~a~-~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl-~~~ADivIDTs~ls~~el~e~I~ 155 (288)
T PRK05416 81 RERGIDVRVLFLDAS-DEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPL-RERADLVIDTSELSVHQLRERIR 155 (288)
T ss_pred HHcCCcEEEEEEECC-HHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhH-HHhCCEEEECCCCCHHHHHHHHH
Confidence 33 344566888774 688888876421 11112222223 222222211 234689998765 555555555
No 119
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.54 E-value=0.074 Score=49.53 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=65.1
Q ss_pred EecCcCChHHHHHHHhc-C-CCCceee-ecC-CCchhhhh-------hhcccH---HHHHH-HHHcCCeEEEEeccCC-c
Q psy6613 151 ITRVTADISLAKRSLMS-N-PSKRAIM-ERS-NSRSSVLT-------EVQTEI---ERVYE-LASTLQLVVLDCDTIN-H 214 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~-P~~F~~s-Vsh-TTR~pFe~-------~I~Tsl---esI~~-vi~sGKi~ILDID~qg-~ 214 (510)
+|++|+||||+.+.|.. . +...... +.. +-|..+.. +....+ ..+.. +...|.+|++|.-... .
T Consensus 10 ~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~~~~~~~~~ 89 (175)
T PRK00889 10 TGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLVSAISPYRE 89 (175)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCHH
Confidence 89999999999998876 2 2222222 221 11222110 000111 11222 3456998888864211 0
Q ss_pred hhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhcC-CCCccEEEeC--CCHHHHHHHH
Q psy6613 215 PSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQ---TRHLNVQMVAAEKLAQCP-QEMFDVILDE--NQLEDACEHI 287 (510)
Q Consensus 215 ~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~---~e~i~kRL~aa~eLEq~~-~~~FD~VIvN--DdLd~A~~eL 287 (510)
..+.++. .-..++|||..| .+++.+|. .++... .+++...+.. -...| +..-|++|.. .+++++++++
T Consensus 90 ~~~~l~~~~~~~~~v~l~~~-~e~~~~R~-~~~l~~~~~~~~i~~~~~~---~~~~~~p~~ad~~i~~~~~~~~~~~~~i 164 (175)
T PRK00889 90 TREEVRANIGNFLEVFVDAP-LEVCEQRD-VKGLYAKARAGEIKHFTGI---DDPYEPPLNPEVECRTDLESLEESVDKV 164 (175)
T ss_pred HHHHHHhhcCCeEEEEEcCC-HHHHHHhC-cccHHHHHHcCCCCCCccc---CCCCCCCCCCcEEEECCCCCHHHHHHHH
Confidence 0122222 223467888887 66777663 111000 0000000100 01223 2445777754 3588888888
Q ss_pred HHHHH
Q psy6613 288 AEYLE 292 (510)
Q Consensus 288 ~~ile 292 (510)
.++|+
T Consensus 165 ~~~l~ 169 (175)
T PRK00889 165 LQKLE 169 (175)
T ss_pred HHHHH
Confidence 86664
No 120
>PRK08118 topology modulation protein; Reviewed
Probab=95.47 E-value=0.062 Score=50.58 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=44.4
Q ss_pred CeE-EecCcCChHHHHHHHhc-C-CCCceee-e---c-CCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhh
Q psy6613 148 MII-ITRVTADISLAKRSLMS-N-PSKRAIM-E---R-SNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLA 219 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~-P~~F~~s-V---s-hTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~l 219 (510)
|++ +||+|+||||+.++|-+ . ...+.+- + + .+.++. + .....+.+++ ++...|+|-...+ ..-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~--~---~~~~~~~~~~-~~~~wVidG~~~~--~~~~ 74 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPK--E---EQITVQNELV-KEDEWIIDGNYGG--TMDI 74 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCH--H---HHHHHHHHHh-cCCCEEEeCCcch--HHHH
Confidence 565 99999999999999887 2 1111110 0 0 111111 0 1112233344 3456888876654 1111
Q ss_pred hcCCCceEEEEeCCCHHHH
Q psy6613 220 KTNLSPCIVYLKISSPKVL 238 (510)
Q Consensus 220 ks~l~PivIFIkPPS~e~L 238 (510)
+....-.+||+.+|-...+
T Consensus 75 ~l~~~d~vi~Ld~p~~~~~ 93 (167)
T PRK08118 75 RLNAADTIIFLDIPRTICL 93 (167)
T ss_pred HHHhCCEEEEEeCCHHHHH
Confidence 2233557899999865333
No 121
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.46 E-value=0.28 Score=53.95 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=58.7
Q ss_pred HHHHHHcCCeEEEEeccCCchhHhhh-c---CCCceEEEEeCCCHHHHHHHHHhcCCCcH-----HHH---HHHH--HHH
Q psy6613 195 VYELASTLQLVVLDCDTINHPSQLAK-T---NLSPCIVYLKISSPKVLQRLIKSRGKSQT-----RHL---NVQM--VAA 260 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~lq~lk-s---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~-----e~i---~kRL--~aa 260 (510)
|.+.+..|..+|+|.-.-- | ..+. . ...-+.++|..++.++.++|...|+.... +.- +..+ -+.
T Consensus 352 I~r~l~eG~SvIIEGVHl~-P-~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQd 429 (475)
T PRK12337 352 QERSAQEGTSLVLEGVHLV-P-GYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEEIRLIQD 429 (475)
T ss_pred HHHHHHcCCeEEEECCCCC-H-HHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHHHHHHHH
Confidence 4667889999999986543 2 2222 1 22334468888999999999988765441 111 1112 112
Q ss_pred HHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHH
Q psy6613 261 EKLAQCPQEMFDVILDENQLEDACEHIAEYLEAY 294 (510)
Q Consensus 261 ~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai 294 (510)
.-+++...+.. -||.|.|+|++.+.+.+.|-..
T Consensus 430 yLv~~A~~~~i-pvI~n~nid~tv~~~l~~i~~~ 462 (475)
T PRK12337 430 HLLRLARQEGV-PVLPGEDLDESIDKALEVVLRR 462 (475)
T ss_pred HHHHHHHHcCC-CeecCccHHHHHHHHHHHHHHH
Confidence 22333322222 3568999999999988766443
No 122
>PRK07261 topology modulation protein; Provisional
Probab=95.44 E-value=0.035 Score=52.34 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=50.1
Q ss_pred CeE-EecCcCChHHHHHHHhc-C-CCCceee-ecCC---CchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhh
Q psy6613 148 MII-ITRVTADISLAKRSLMS-N-PSKRAIM-ERSN---SRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAK 220 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~-P~~F~~s-VshT---TR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lk 220 (510)
|++ +|++|+|||||.+.|.. . ...+..- +.+. +..+ ...-+..+.+++.++. .|+|-.... ...-..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-wIidg~~~~-~~~~~~ 75 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD----DDDMIADISNFLLKHD-WIIDGNYSW-CLYEER 75 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC----HHHHHHHHHHHHhCCC-EEEcCcchh-hhHHHH
Confidence 454 99999999999999876 2 1111100 0000 1111 0123455666777777 888887643 111111
Q ss_pred cCCCceEEEEeCCCHHHHHHHHH
Q psy6613 221 TNLSPCIVYLKISSPKVLQRLIK 243 (510)
Q Consensus 221 s~l~PivIFIkPPS~e~L~~rLr 243 (510)
....-.+||+.+|-...+.+.++
T Consensus 76 l~~ad~vI~Ld~p~~~~~~R~lk 98 (171)
T PRK07261 76 MQEADQIIFLNFSRFNCLYRAFK 98 (171)
T ss_pred HHHCCEEEEEcCCHHHHHHHHHH
Confidence 12345689999996655554443
No 123
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.41 E-value=0.23 Score=47.23 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+||||+.+.|..
T Consensus 9 ~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 9 MGVSGSGKSLIGSKIAA 25 (176)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999998876
No 124
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.34 E-value=0.34 Score=45.65 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=53.4
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCC---Cchh----hhhh-----------hc-ccHHHHHHHHH---cCCeEEEE
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSN---SRSS----VLTE-----------VQ-TEIERVYELAS---TLQLVVLD 208 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshT---TR~p----Fe~~-----------I~-TslesI~~vi~---sGKi~ILD 208 (510)
.|+.|+||||+.+.|-++.....+..|.. ...+ |..+ +. +..+.+.+++. +|++||+|
T Consensus 5 eG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~vI~D 84 (193)
T cd01673 5 EGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQGVILE 84 (193)
T ss_pred ECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCceEEE
Confidence 79999999999998876332222222210 0111 1111 11 34444555544 89999999
Q ss_pred eccCCch----------------h----Hhhhc----CCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 209 CDTINHP----------------S----QLAKT----NLSPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 209 ID~qg~~----------------l----q~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
=.+..+. . ++... ...|-.+|..--+.++..+|++.|+.
T Consensus 85 R~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 85 RSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred cChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 6443211 0 01111 13465555555578888999988875
No 125
>PRK00625 shikimate kinase; Provisional
Probab=95.30 E-value=0.03 Score=53.35 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=47.7
Q ss_pred EecCcCChHHHHHHHhcCCCCcee-eecC-----CCc----hh---hhhhh----c-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAI-MERS-----NSR----SS---VLTEV----Q-TEIERVYELASTLQLVVLDCDTI 212 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~-sVsh-----TTR----~p---Fe~~I----~-TslesI~~vi~sGKi~ILDID~q 212 (510)
+|.+|+||||+.+.|-++-+ +.+ ...+ +-. .. |...- . ...+.++++.. + .+|+.+..-
T Consensus 6 iG~pGsGKTT~~k~La~~l~-~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~-~~VIs~GGg 82 (173)
T PRK00625 6 CGLPTVGKTSFGKALAKFLS-LPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-I-PSIVALGGG 82 (173)
T ss_pred ECCCCCCHHHHHHHHHHHhC-CCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-C-CeEEECCCC
Confidence 99999999999998866221 111 1110 111 11 22110 0 23344555443 3 334444311
Q ss_pred C----chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613 213 N----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKS 248 (510)
Q Consensus 213 g----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~ 248 (510)
. ...+.++ -..++||+..| .+++.+|+..|+..
T Consensus 83 ~~~~~e~~~~l~--~~~~Vv~L~~~-~e~l~~Rl~~R~~~ 119 (173)
T PRK00625 83 TLMIEPSYAHIR--NRGLLVLLSLP-IATIYQRLQKRGLP 119 (173)
T ss_pred ccCCHHHHHHHh--cCCEEEEEECC-HHHHHHHHhcCCCC
Confidence 1 0022222 24678888876 88999999888653
No 126
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.25 E-value=0.19 Score=52.41 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCeEEEEeccCCchhHhhhc----CCCceEEEEeCCCHHHHHHHHHhcCCCcH---H---HHHHHH--HHH
Q psy6613 193 ERVYELASTLQLVVLDCDTINHPSQLAKT----NLSPCIVYLKISSPKVLQRLIKSRGKSQT---R---HLNVQM--VAA 260 (510)
Q Consensus 193 esI~~vi~sGKi~ILDID~qg~~lq~lks----~l~PivIFIkPPS~e~L~~rLr~Rgt~~~---e---~i~kRL--~aa 260 (510)
.-|.+.+++|+.+|++--..- -..++. ...-+.+++...+.+..+.|...|+.... + .-..++ ...
T Consensus 181 ~~I~~~~~~g~s~IiEGvhl~--P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~y~~~~~~ir~iq~ 258 (301)
T PRK04220 181 AVIERALKEGISVIIEGVHIV--PGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRRPAERYLKNFEIIREIND 258 (301)
T ss_pred HHHHHHHHhCCcEEEecCCCC--HHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhhHHHHHHHHHHHHH
Confidence 346677889999999865543 233332 33445566677899999988766543221 1 112223 223
Q ss_pred HHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHH
Q psy6613 261 EKLAQCPQEMFDVILDENQLEDACEHIAEYLEA 293 (510)
Q Consensus 261 ~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ilea 293 (510)
.-++++-.+.+.+ |.|.|+|++.+.+.++|..
T Consensus 259 ~l~~~a~~~~ip~-I~n~~i~~s~~~~~~~i~~ 290 (301)
T PRK04220 259 YIVEKAKKHGVPV-IENISIEETVDKILEIITE 290 (301)
T ss_pred HHHHHHHHhCCCe-ecCccHHHHHHHHHHHHHH
Confidence 3344444455555 7899999999998877643
No 127
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.23 E-value=0.19 Score=45.35 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=51.1
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----hh-------h----hhcccHHHHH-HHHHcCCeEEEEeccCC
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----VL-------T----EVQTEIERVY-ELASTLQLVVLDCDTIN 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----Fe-------~----~I~TslesI~-~vi~sGKi~ILDID~qg 213 (510)
+|++|+||||+.+.|.+..+. .+.-..+=|.. +. . .+..-.+... .+...|..||+|...-.
T Consensus 5 ~G~~GsGKST~a~~l~~~~~~-~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~~~~ 83 (150)
T cd02021 5 MGVSGSGKSTVGKALAERLGA-PFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACSALK 83 (150)
T ss_pred EcCCCCCHHHHHHHHHhhcCC-EEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEecccc
Confidence 899999999999988773321 11111112221 00 0 0001111222 23358999999987643
Q ss_pred chhHhhhc--CC----CceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 214 HPSQLAKT--NL----SPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 214 ~~lq~lks--~l----~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
...... .+ ...+|++..| .+++++|++.|..
T Consensus 84 --~~~r~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (150)
T cd02021 84 --RIYRDILRGGAANPRVRFVHLDGP-REVLAERLAARKG 120 (150)
T ss_pred --HHHHHHHHhcCCCCCEEEEEEECC-HHHHHHHHHhccc
Confidence 222211 22 3456777775 7788999988853
No 128
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.14 E-value=0.035 Score=57.30 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=46.0
Q ss_pred EEecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhhhhh-----------------------cccHHHHHH
Q psy6613 150 IITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVLTEV-----------------------QTEIERVYE 197 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe~~I-----------------------~TslesI~~ 197 (510)
|+||+|+|||+|..+|.+ ++.. +....+.+|++|-.++. .+..+.|.+
T Consensus 4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i~~ 83 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAIAD 83 (287)
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHHHH
Confidence 399999999999999988 5432 33345889998822111 168888999
Q ss_pred HHHcCCeEEEEecc
Q psy6613 198 LASTLQLVVLDCDT 211 (510)
Q Consensus 198 vi~sGKi~ILDID~ 211 (510)
+.+.|+++||---.
T Consensus 84 ~~~~g~~pi~vGGT 97 (287)
T TIGR00174 84 ITARGKIPLLVGGT 97 (287)
T ss_pred HHhCCCCEEEEcCc
Confidence 99999999995543
No 129
>KOG4278|consensus
Probab=95.12 E-value=0.032 Score=62.92 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=59.5
Q ss_pred CcCC-CCccchhhhHHHhHHHHHHHHHHHhh-hccCCCeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEee-cCC
Q psy6613 11 SQPS-SDLSLDEEKETLRREKERQALSQLEK-ARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDS 87 (510)
Q Consensus 11 ~~~~-~d~~~~~~~~~~~~~~~~~a~~~L~~-a~~k~~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~-~d~ 87 (510)
+||. .|+--..+-|+.| -...+-|-. +....+.+|| |||||.+.-|. .|+..+||-|+|+.. .|+
T Consensus 57 ~RP~~~dfePq~lsea~R----wsSkEnLla~~sendpNLFV-ALYDFvasGdn-------tLSitKGeklRvLGYN~Ng 124 (1157)
T KOG4278|consen 57 HRPYGCDFEPQSLSEAIR----WSSKENLLACSSENDPNLFV-ALYDFVASGDN-------TLSITKGEKLRVLGYNKNG 124 (1157)
T ss_pred cCccccccCcchhHHHHh----ccchhhhhcccccCCCceeE-eeeeeeccccc-------eeeeecCceEEEeeecCCC
Confidence 3666 5555545556666 445555655 3333456666 99999999885 699999999999997 466
Q ss_pred CceEEEEccCCCceeeecChhH
Q psy6613 88 NWWIGRLVKEGSECGFIPSPVK 109 (510)
Q Consensus 88 ~WWqar~v~~~~~~GlIPS~~~ 109 (510)
.|-.||- .+..|++||+.-
T Consensus 125 EWcEart---KNGqGWVPSNyI 143 (1157)
T KOG4278|consen 125 EWCEART---KNGQGWVPSNYI 143 (1157)
T ss_pred cceeecc---cCCCcccccccc
Confidence 7888885 234499998764
No 130
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.12 E-value=0.38 Score=47.92 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
|++ +||+|+||+|+.++|.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 455 99999999999999887
No 131
>PRK06217 hypothetical protein; Validated
Probab=95.05 E-value=0.11 Score=48.96 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=47.9
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCC------CceeeecC---CCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchh
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPS------KRAIMERS---NSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPS 216 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~------~F~~sVsh---TTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~l 216 (510)
+|+ +|++|+||||+.++|-+ ..- .+...... .++.+.+ .....+.+.+..+..+|+|--+ .
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~vi~G~~----~ 74 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPE----ERLRLLLEDLRPREGWVLSGSA----L 74 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHH----HHHHHHHHHHhcCCCEEEEccH----H
Confidence 455 99999999999999987 211 11110000 1111111 1123334445567778998444 3
Q ss_pred Hhhhc--CCCceEEEEeCCCHHHHHHHHHhc
Q psy6613 217 QLAKT--NLSPCIVYLKISSPKVLQRLIKSR 245 (510)
Q Consensus 217 q~lks--~l~PivIFIkPPS~e~L~~rLr~R 245 (510)
..... ...-.+||+..| .++...|+.+|
T Consensus 75 ~~~~~~~~~~d~~i~Ld~~-~~~~~~Rl~~R 104 (183)
T PRK06217 75 GWGDPLEPLFDLVVFLTIP-PELRLERLRLR 104 (183)
T ss_pred HHHHHHHhhCCEEEEEECC-HHHHHHHHHcC
Confidence 33222 334467888775 55566666554
No 132
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.02 E-value=0.055 Score=50.78 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCeEEEEeccCCc-------------hhHhhhc-CC--CceEEEEeCCCHHHHHHHHHhcCC-Cc----HH
Q psy6613 193 ERVYELASTLQLVVLDCDTINH-------------PSQLAKT-NL--SPCIVYLKISSPKVLQRLIKSRGK-SQ----TR 251 (510)
Q Consensus 193 esI~~vi~sGKi~ILDID~qg~-------------~lq~lks-~l--~PivIFIkPPS~e~L~~rLr~Rgt-~~----~e 251 (510)
..|...+++|++||+|=-...+ .+..+.. -+ .|=++|+.--+.++..+|+..|+. .. ..
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~ 150 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDL 150 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHH
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHH
Confidence 4567778899999999632110 0111111 22 665555544567888899988877 11 12
Q ss_pred HHHHHH-HHHHHHHhcCCCCccEEEe--CCCHHHHHHH
Q psy6613 252 HLNVQM-VAAEKLAQCPQEMFDVILD--ENQLEDACEH 286 (510)
Q Consensus 252 ~i~kRL-~aa~eLEq~~~~~FD~VIv--NDdLd~A~~e 286 (510)
+...++ ..-.++.. ..+ ..+|+ +.++++..++
T Consensus 151 ~~~~~~~~~y~~l~~-~~~--~~~iid~~~~~e~v~~~ 185 (186)
T PF02223_consen 151 EYLRRVREAYLELAK-DPN--NWVIIDASRSIEEVHEQ 185 (186)
T ss_dssp HHHHHHHHHHHHHHH-TTT--TEEEEETTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCC--CEEEEECCCCHHHHHhh
Confidence 333344 33344444 233 34444 4556555544
No 133
>KOG3771|consensus
Probab=95.00 E-value=0.012 Score=63.88 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=41.5
Q ss_pred CeeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecC-CCceEEEEccCCC--ceeeec
Q psy6613 46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGS--ECGFIP 105 (510)
Q Consensus 46 ~~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~--~~GlIP 105 (510)
..+.|.|+|||...+-+ .|+|+.||+|.|+...+ ++||.|++.|..+ .-|++|
T Consensus 399 ~~~~v~a~~dy~a~~~d-------eLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 399 FLYKVKALHDYAAQDTD-------ELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred Cccceeccccccccccc-------cccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 46679999999999876 49999999999999644 5899999975422 245554
No 134
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.95 E-value=0.084 Score=49.65 Aligned_cols=137 Identities=13% Similarity=0.060 Sum_probs=65.5
Q ss_pred EecCcCChHHHHHHHhc-CC-CCce-eeec-CCCchhhhh-------h----hcccHHHHHHHHHcCCeEEEEeccCCch
Q psy6613 151 ITRVTADISLAKRSLMS-NP-SKRA-IMER-SNSRSSVLT-------E----VQTEIERVYELASTLQLVVLDCDTINHP 215 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P-~~F~-~sVs-hTTR~pFe~-------~----I~TslesI~~vi~sGKi~ILDID~qg~~ 215 (510)
+|++|+||||+.+.|.. .+ .... ..+. ..-|..+.. + +..-......++.+|.+||+|.-.....
T Consensus 24 ~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~VI~d~~~~~~~ 103 (184)
T TIGR00455 24 TGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVITSFISPYRA 103 (184)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCHH
Confidence 89999999999998876 32 1111 2221 112221100 0 0011123355778999999997532200
Q ss_pred -hHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeCC--CHHHHHHHH
Q psy6613 216 -SQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDEN--QLEDACEHI 287 (510)
Q Consensus 216 -lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvND--dLd~A~~eL 287 (510)
.+.++. ...-++||+..| .+++.+|-. ++.- .......+.....+...| +..-|++|.++ +++++++++
T Consensus 104 ~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~-~~l~-~~~~~~~~~~l~~~~~~y~~p~~adl~Idt~~~~~~~~~~~i 180 (184)
T TIGR00455 104 DRQMVRELIEKGEFIEVFVDCP-LEVCEQRDP-KGLY-KKARNGEIKGFTGIDSPYEAPENPEVVLDTDQNDREECVGQI 180 (184)
T ss_pred HHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCc-hhHH-HHHhcCCccCcccccCCCCCCCCCcEEEECCCCCHHHHHHHH
Confidence 011122 122355777766 666666621 1100 000000110001112222 35668888754 688888877
Q ss_pred HHH
Q psy6613 288 AEY 290 (510)
Q Consensus 288 ~~i 290 (510)
.++
T Consensus 181 ~~~ 183 (184)
T TIGR00455 181 IEK 183 (184)
T ss_pred HHh
Confidence 644
No 135
>PRK14529 adenylate kinase; Provisional
Probab=94.90 E-value=0.53 Score=46.94 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=53.8
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHHc--CCeEE
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAST--LQLVV 206 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~s--GKi~I 206 (510)
+++ +||+|+||+|+.++|.+....-.++.....|.. +.+.+. ...+-|.+.+.+ .+-.|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i 81 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL 81 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence 355 999999999999998872211223333344432 111111 233334444332 46689
Q ss_pred EEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc
Q psy6613 207 LDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR 245 (510)
Q Consensus 207 LDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R 245 (510)
||-=|.. ..+... ...| ++|++..|. ++|.+|+..|
T Consensus 82 LDGfPRt--~~Qa~~l~~~l~~~~~~~~~vi~l~~~~-~~l~~Rl~~R 126 (223)
T PRK14529 82 LDGFPRN--KVQAEKLWEALQKEGMKLDYVIEILLPR-EVAKNRIMGR 126 (223)
T ss_pred EeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHhhCC
Confidence 9998877 444332 2233 467777665 7777777665
No 136
>PLN02924 thymidylate kinase
Probab=94.87 E-value=0.41 Score=47.35 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=76.1
Q ss_pred CCCCeE--EecCcCChHHHHHHHhcCCCCceeeecCCCchh----------------------------hhhhhcccHHH
Q psy6613 145 SPGMII--ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------------------------VLTEVQTEIER 194 (510)
Q Consensus 145 s~~RpI--~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------------------------Fe~~I~Tsles 194 (510)
..+++| -|+-|+||||+.+.|.++-..-++.+ .+||.| |.++....++.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~ 92 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL 92 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356655 79999999999998887211112222 122222 11111133566
Q ss_pred HHHHHHcCCeEEEEeccCCc---------hhHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCCc-HHHHHHHH-H
Q psy6613 195 VYELASTLQLVVLDCDTINH---------PSQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKSQ-TRHLNVQM-V 258 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~---------~lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~-~e~i~kRL-~ 258 (510)
|...+++|++||+|=-.-.+ ..+.+.. .+.| ++||+.. +.++..+|...++..- ..+..+++ .
T Consensus 93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~-~~~~a~~R~~~~~~~~E~~~~~~rv~~ 171 (220)
T PLN02924 93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDI-SPEEAAERGGYGGERYEKLEFQKKVAK 171 (220)
T ss_pred HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeC-CHHHHHHHhccCccccccHHHHHHHHH
Confidence 88888999999999754411 0122222 2356 4555554 4555555643321111 12333444 2
Q ss_pred HHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHHHH
Q psy6613 259 AAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAYWR 296 (510)
Q Consensus 259 aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai~~ 296 (510)
+=.++.. . .++++ +.++++..+++.++|.....
T Consensus 172 ~Y~~la~---~--~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 172 RFQTLRD---S--SWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred HHHHHhh---c--CEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2233432 1 23333 34688888888877766543
No 137
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.72 E-value=0.2 Score=47.95 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCCeE--EecCcCChHHHHHHHhc--CCCCc-eeeec-CCCchh------h--h---hhhcccHHHHHHHHHcCCeEEEE
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS--NPSKR-AIMER-SNSRSS------V--L---TEVQTEIERVYELASTLQLVVLD 208 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~--~P~~F-~~sVs-hTTR~p------F--e---~~I~TslesI~~vi~sGKi~ILD 208 (510)
.+.+| +|++|+|||||.+.|.. .+..+ ...+. ..-|.. + + ..+..-.+....++..|.+||.+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~ 102 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTA 102 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 34454 89999999999998876 22222 22221 111111 0 0 00011112344567789999876
Q ss_pred eccCC-chhHhhhcCC--Cce-EEEEeCCCHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhcCC--CCccEEEeC--
Q psy6613 209 CDTIN-HPSQLAKTNL--SPC-IVYLKISSPKVLQRLIKSRGKSQ---TRHLNVQMVAAEKLAQCPQ--EMFDVILDE-- 277 (510)
Q Consensus 209 ID~qg-~~lq~lks~l--~Pi-vIFIkPPS~e~L~~rLr~Rgt~~---~e~i~kRL~aa~eLEq~~~--~~FD~VIvN-- 277 (510)
.--.. ...+.++..+ .++ +||+..| .+++.+|.. |+.-. .+++ ..+ .+....|. ..-|++|.+
T Consensus 103 ~~~~~~~~R~~~r~~l~~~~~i~V~L~~~-~e~~~~R~~-r~l~~~~~~~~~-~~l---~~~r~~Y~~p~~ad~~Idt~~ 176 (198)
T PRK03846 103 FISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDP-KGLYKKARAGEI-RNF---TGIDSVYEAPESPEIHLDTGE 176 (198)
T ss_pred eCCCCHHHHHHHHHHcccCCEEEEEEcCC-HHHHHhcCc-hhHHHHhhcCCc-cCc---ccccccCCCCCCCCEEEECCC
Confidence 53211 0012233212 244 7888887 556665511 11000 0000 001 00111233 446788874
Q ss_pred CCHHHHHHHHHHHHH
Q psy6613 278 NQLEDACEHIAEYLE 292 (510)
Q Consensus 278 DdLd~A~~eL~~ile 292 (510)
.++++.++++.++|.
T Consensus 177 ~~~~~vv~~Il~~l~ 191 (198)
T PRK03846 177 QLVTNLVEQLLDYLR 191 (198)
T ss_pred CCHHHHHHHHHHHHH
Confidence 457888888876553
No 138
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.69 E-value=0.21 Score=48.18 Aligned_cols=139 Identities=22% Similarity=0.159 Sum_probs=73.9
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCCCceee---ecCCCchh----hhhh----hc-ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPSKRAIM---ERSNSRSS----VLTE----VQ-TEIERVYELASTLQLVVLDCDTIN 213 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s---VshTTR~p----Fe~~----I~-TslesI~~vi~sGKi~ILDID~qg 213 (510)
.+| +|+.||||||+-+.|-+ ---.|.=+ |...+..+ |+.+ +. .+.+.|.+++..+ .+|+-.---.
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~-~~ViaTGGG~ 82 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEED-NAVIATGGGA 82 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEECCCcc
Confidence 355 99999999999998865 22123211 11112222 3321 11 5667788888887 4555443321
Q ss_pred chhHhh--hc--CCCceEEEEeCCCHHHHHHHHHh---cCCCc---HHHHHHHH-HHHHHHHhcCCCCccEEEeCCCH-H
Q psy6613 214 HPSQLA--KT--NLSPCIVYLKISSPKVLQRLIKS---RGKSQ---TRHLNVQM-VAAEKLAQCPQEMFDVILDENQL-E 281 (510)
Q Consensus 214 ~~lq~l--ks--~l~PivIFIkPPS~e~L~~rLr~---Rgt~~---~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDdL-d 281 (510)
...- +. .-..++||+..| +++|.+|++. |..-. ..+....+ +.-.-+.+ ..=|+++..++- +
T Consensus 83 --v~~~enr~~l~~~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~---e~a~~~~~~~~~~~ 156 (172)
T COG0703 83 --VLSEENRNLLKKRGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR---EVADFIIDTDDRSE 156 (172)
T ss_pred --ccCHHHHHHHHhCCeEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH---HhCcEEecCCCCcH
Confidence 1111 11 124589999985 8899999873 22111 11223333 33333333 335777766554 4
Q ss_pred HHHHHHHHHHHH
Q psy6613 282 DACEHIAEYLEA 293 (510)
Q Consensus 282 ~A~~eL~~ilea 293 (510)
...+++...+..
T Consensus 157 ~v~~~i~~~l~~ 168 (172)
T COG0703 157 EVVEEILEALEG 168 (172)
T ss_pred HHHHHHHHHHHH
Confidence 555666644443
No 139
>KOG1702|consensus
Probab=94.57 E-value=0.031 Score=55.18 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=44.4
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChh
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
-..||.|||.+++.+ +++|.-||.|--+..-|.+|.-|.++.. |..|+.|.+.
T Consensus 208 ktyra~ydysaqded-------evsF~dgd~ivnvq~iddGWmygtv~rt-g~tGmlpaNy 260 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDED-------EVSFVDGDYIVNVQSIDDGWMYGTVVRT-GWTGMLPANY 260 (264)
T ss_pred ccchhhccCcccCcc-------eeEEecCCeEEEEEeccCCceeeEEEec-cccCCCchhh
Confidence 357999999998865 5999999998888888888988888764 7899999764
No 140
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.55 E-value=0.14 Score=57.56 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=71.3
Q ss_pred EecCcCChHHHHHHHhc--CC--CC-ceeeecCCCchhhhhhh-------c---ccH-HHHHHHHHcCCeEEEEeccCC-
Q psy6613 151 ITRVTADISLAKRSLMS--NP--SK-RAIMERSNSRSSVLTEV-------Q---TEI-ERVYELASTLQLVVLDCDTIN- 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~--~P--~~-F~~sVshTTR~pFe~~I-------~---Tsl-esI~~vi~sGKi~ILDID~qg- 213 (510)
+|++|+|||||.+.|.. .. .. +.+.-...-|..+..+. . ..+ .....+++.|..||+|.-.--
T Consensus 398 ~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~ 477 (568)
T PRK05537 398 TGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYR 477 (568)
T ss_pred ECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchH
Confidence 89999999999999876 22 11 12222222232211110 0 112 233558889999999964211
Q ss_pred ----chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHH-HHHHHHHhcC-CCCccEEEeCC--CHHHH
Q psy6613 214 ----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQM-VAAEKLAQCP-QEMFDVILDEN--QLEDA 283 (510)
Q Consensus 214 ----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL-~aa~eLEq~~-~~~FD~VIvND--dLd~A 283 (510)
...++++..-..++||+..| .+++.+|.+. +.-. .....+.+ ..- ...| +..-|++|.++ +.+++
T Consensus 478 ~~R~~nr~llk~~g~fivV~L~~p-~e~l~~R~rr-~Ll~~~~~~~i~~l~~~R---~~yy~p~~Adl~IDt~~~s~~ei 552 (568)
T PRK05537 478 ATRREVREMIEAYGGFIEVHVATP-LEVCEQRDRK-GLYAKAREGKIKGFTGIS---DPYEPPANPELVIDTTNVTPDEC 552 (568)
T ss_pred HHHHHHHHHHhhcCCEEEEEEcCC-HHHHHHhccc-cccccchhchhhcccccc---ccccCCCCCcEEEECCCCCHHHH
Confidence 00222222112257888877 8888888642 2110 00111111 100 1122 24568888765 58888
Q ss_pred HHHHHHHHH
Q psy6613 284 CEHIAEYLE 292 (510)
Q Consensus 284 ~~eL~~ile 292 (510)
++++.++|+
T Consensus 553 v~~Il~~L~ 561 (568)
T PRK05537 553 AHKILLYLE 561 (568)
T ss_pred HHHHHHHHH
Confidence 888886664
No 141
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.53 E-value=0.088 Score=47.93 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=56.2
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeecCCCchh----------hhhhhc--------ccHHHHHHHHH---cCCeEEEE
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS----------VLTEVQ--------TEIERVYELAS---TLQLVVLD 208 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p----------Fe~~I~--------TslesI~~vi~---sGKi~ILD 208 (510)
|+||+|+||+|+.++|.+...--.+++..--|.- ..+.+. .-.+-|..-+. ..+..|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 4799999999999999882222223322211111 111111 11122222222 46889999
Q ss_pred eccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH
Q psy6613 209 CDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM 257 (510)
Q Consensus 209 ID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL 257 (510)
-=|.. ....+. ...| .+|++..| .+.+.+|+.. ++.+.+.+||
T Consensus 81 GfPrt--~~Qa~~l~~~~~~~~~~~~~vi~L~~~-~~~~~~R~~~---d~~~~i~~Rl 132 (151)
T PF00406_consen 81 GFPRT--LEQAEALEEILEEEGIPPDLVIFLDCP-DETLIERLSQ---DNEEVIKKRL 132 (151)
T ss_dssp SB-SS--HHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT---GSHHHHHHHH
T ss_pred ecccc--HHHHHHHHHHHhhcccchheeeccccc-hhhhhhhccc---CCHHHHHHHH
Confidence 99987 443332 2445 55666655 4677777766 6667788887
No 142
>PRK14528 adenylate kinase; Provisional
Probab=94.52 E-value=0.55 Score=44.80 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=68.7
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh------hh----hhhc--------ccHHHHHHHHHc---CCeE
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS------VL----TEVQ--------TEIERVYELAST---LQLV 205 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p------Fe----~~I~--------TslesI~~vi~s---GKi~ 205 (510)
+++ +||+|+||+|+.+.|.++...-.++...--|.- +- ..+. .....+.+.+.+ ....
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~ 82 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGF 82 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 455 999999999999988762211111111111211 00 0000 111233333332 3457
Q ss_pred EEEeccCCchhHhhhc--------CCCc-eEEEEeCCCHHHHHHHHHhc------CCCcHHHHHHHH----HHHHHHHhc
Q psy6613 206 VLDCDTINHPSQLAKT--------NLSP-CIVYLKISSPKVLQRLIKSR------GKSQTRHLNVQM----VAAEKLAQC 266 (510)
Q Consensus 206 ILDID~qg~~lq~lks--------~l~P-ivIFIkPPS~e~L~~rLr~R------gt~~~e~i~kRL----~aa~eLEq~ 266 (510)
|+|--|.. ....+. ...| .+|++..|. +++.+|+..| ..++.+.+.+|| .....+..+
T Consensus 83 viDG~Pr~--~~qa~~l~~~~~~~~~~~d~vI~Ld~~~-~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~ 159 (186)
T PRK14528 83 LLDGFPRT--VEQADALDALLKNEGKSIDKAINLEVPD-GELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDF 159 (186)
T ss_pred EEeCCCCC--HHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 88887765 322221 1233 456666654 4566666654 245678888998 222334444
Q ss_pred CC--CCccEEEeCCCHHHHHHHHH
Q psy6613 267 PQ--EMFDVILDENQLEDACEHIA 288 (510)
Q Consensus 267 ~~--~~FD~VIvNDdLd~A~~eL~ 288 (510)
|. +.+-.|=-+.+.++.+.+|.
T Consensus 160 y~~~~~~~~i~~~~~~~~v~~~~~ 183 (186)
T PRK14528 160 YAAQKKLSQVNGVGSLEEVTSLIQ 183 (186)
T ss_pred HHhCCCEEEEECCCCHHHHHHHHH
Confidence 42 22222223456777776665
No 143
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.42 E-value=0.76 Score=42.97 Aligned_cols=17 Identities=6% Similarity=-0.036 Sum_probs=15.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||||+||||+.+.|..
T Consensus 1 ~G~sGsGKSTla~~la~ 17 (163)
T PRK11545 1 MGVSGSGKSAVASEVAH 17 (163)
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 59999999999998876
No 144
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.86 Score=44.30 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=71.4
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCC--------------chhhh---hhhc--ccHHHHHHHHHcCCeEEEEecc
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNS--------------RSSVL---TEVQ--TEIERVYELASTLQLVVLDCDT 211 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTT--------------R~pFe---~~I~--TslesI~~vi~sGKi~ILDID~ 211 (510)
.|-+||||||+++-+.+.- -+...|.+-+ |..+- -+.| .-..+.+++.+.+..+|+|.+.
T Consensus 10 tGVpGvGKTTVl~~~~~~l-~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iivDtH~ 88 (189)
T COG2019 10 TGVPGVGKTTVLKIALKEL-VKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIVDTHA 88 (189)
T ss_pred EcCCCCChHHHHHHHHHHH-hhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEEeccc
Confidence 8999999999988766511 0111121111 11000 0001 3445667777777778888863
Q ss_pred ---------CCchhHhhhcCCCceEEEEeCCCHHHHH-HHHHh----cCCCcHHHHHHHH--HHHHHHHh-cCCCCccEE
Q psy6613 212 ---------INHPSQLAKTNLSPCIVYLKISSPKVLQ-RLIKS----RGKSQTRHLNVQM--VAAEKLAQ-CPQEMFDVI 274 (510)
Q Consensus 212 ---------qg~~lq~lks~l~PivIFIkPPS~e~L~-~rLr~----Rgt~~~e~i~kRL--~aa~eLEq-~~~~~FD~V 274 (510)
.|.|.-++. .++|=+|+|.--+.+++. +|++. |.-++.+++..-+ .....+.. ...+--=.|
T Consensus 89 ~IkTP~GylpgLP~~Vl~-~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkI 167 (189)
T COG2019 89 TIKTPAGYLPGLPSWVLE-ELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKI 167 (189)
T ss_pred eecCCCccCCCCcHHHHH-hcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 121211222 356666666666665554 44433 3334455544332 21222221 111222345
Q ss_pred EeCC--CHHHHHHHHHHHHH
Q psy6613 275 LDEN--QLEDACEHIAEYLE 292 (510)
Q Consensus 275 IvND--dLd~A~~eL~~ile 292 (510)
|.|+ +++.|..++...|+
T Consensus 168 V~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 168 VENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred EeCCCCCHHHHHHHHHHHHh
Confidence 5665 79999999886553
No 145
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.15 E-value=0.8 Score=44.89 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=31.5
Q ss_pred CceEEEEeCCCHHHHHHHHHhcC---CCcHHHHHHHHHHH----HH-HHhcCCCCccEEEeCCCH
Q psy6613 224 SPCIVYLKISSPKVLQRLIKSRG---KSQTRHLNVQMVAA----EK-LAQCPQEMFDVILDENQL 280 (510)
Q Consensus 224 ~PivIFIkPPS~e~L~~rLr~Rg---t~~~e~i~kRL~aa----~e-LEq~~~~~FD~VIvNDdL 280 (510)
.-.+|||.+|... ..+|+..|+ .-+.+++.+++... .+ ++. ....=|+||.|+..
T Consensus 161 ~D~vi~v~~~~~~-~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~-~~~~ad~vI~n~~~ 223 (229)
T PRK09270 161 FDFTIFLDAPAEV-LRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLE-TSRPADLVLEMTAT 223 (229)
T ss_pred CCEEEEEECCHHH-HHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHh-cCCCCCEEEEecCC
Confidence 3478999987654 445554552 22445666666221 11 222 23677999998764
No 146
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.75 Score=44.44 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=71.3
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeec--CCCchh----------hhhh------hcccHHHH-HHHHHcCCeEEEEecc
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMER--SNSRSS----------VLTE------VQTEIERV-YELASTLQLVVLDCDT 211 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVs--hTTR~p----------Fe~~------I~TslesI-~~vi~sGKi~ILDID~ 211 (510)
+||+|+||||+.++|-++-. +.+ |+ .+=|.. |.+. +--.++.- .+++. ...|||+-..
T Consensus 6 sG~pGsG~TTva~~lAe~~g-l~~-vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVlegrL 82 (179)
T COG1102 6 SGLPGSGKTTVARELAEHLG-LKL-VSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVLEGRL 82 (179)
T ss_pred ccCCCCChhHHHHHHHHHhC-Cce-eeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEEhhhh
Confidence 89999999999998887221 111 22 122333 1110 00222222 23344 7778888877
Q ss_pred CCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH---HHHHHHH--hcC------CCCccEEEeCCCH
Q psy6613 212 INHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM---VAAEKLA--QCP------QEMFDVILDENQL 280 (510)
Q Consensus 212 qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL---~aa~eLE--q~~------~~~FD~VIvNDdL 280 (510)
-|. +.+ ....+-||++.|=.-.. +|...|..-+-++....+ +.+++.. ..| =..||.||....+
T Consensus 83 A~W---i~k-~~adlkI~L~Apl~vRa-~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~ 157 (179)
T COG1102 83 AGW---IVR-EYADLKIWLKAPLEVRA-ERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKW 157 (179)
T ss_pred HHH---Hhc-cccceEEEEeCcHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccC
Confidence 552 222 34556799999843333 444444433333444444 2222211 112 2468999977666
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy6613 281 EDACEHIAEYLEAYWRA 297 (510)
Q Consensus 281 d~A~~eL~~ileai~~a 297 (510)
+. +++..+|..-+..
T Consensus 158 ~~--~~v~~il~~aid~ 172 (179)
T COG1102 158 DP--EEVFLILLDAIDA 172 (179)
T ss_pred CH--HHHHHHHHHHHHh
Confidence 55 5566555544443
No 147
>COG4639 Predicted kinase [General function prediction only]
Probab=94.02 E-value=0.41 Score=45.84 Aligned_cols=124 Identities=9% Similarity=0.017 Sum_probs=69.2
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----hhhhhc--------ccHHHHHHHHHcCCeEEEEeccCCchh-
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----VLTEVQ--------TEIERVYELASTLQLVVLDCDTINHPS- 216 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----Fe~~I~--------TslesI~~vi~sGKi~ILDID~qg~~l- 216 (510)
+|++|+||+|..+.... +.+..++..+ |.- -.+..+ .-.+..+..+++|++.|+|...-- +.
T Consensus 8 ~G~~~sGKsT~ak~n~~--~~~~lsld~~-r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn~r-r~~ 83 (168)
T COG4639 8 RGASGSGKSTFAKENFL--QNYVLSLDDL-RLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATNLR-RED 83 (168)
T ss_pred ecCCCCchhHHHHHhCC--CcceecHHHH-HHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcccCC-HHH
Confidence 99999999998886543 2233333322 221 011111 344566778899999999997622 11
Q ss_pred -Hhhh----c-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCCHH
Q psy6613 217 -QLAK----T-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQLE 281 (510)
Q Consensus 217 -q~lk----s-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDdLd 281 (510)
+.+. . .+.+++|.+.-| .+.+.+|.+.|...-.+++..+| .....++- +..|-++..+..-+
T Consensus 84 r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~~r~~~~~l~--~e~~~~~~~~~s~e 152 (168)
T COG4639 84 RRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRMLRETIDLLE--KEPFRYVWTLSSPE 152 (168)
T ss_pred HHHHHHHHHHhCCeEEEEEEeCC-HHHHHHHhhccchhCCHHHHHHHHHHHHhhcc--CCCeEEEEecCCHH
Confidence 1111 1 456677766665 45666665544434445566666 44333222 24566666665543
No 148
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.87 E-value=1.1 Score=44.64 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=54.4
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchhh----hhhhc------------ccHHHHHHHHHcCCeEEEEec----
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSV----LTEVQ------------TEIERVYELASTLQLVVLDCD---- 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pF----e~~I~------------TslesI~~vi~sGKi~ILDID---- 210 (510)
.||.|+|||||.++|-++-. +....-..+--|| .++.+ ...+.+..+.+.+- .|+|-.
T Consensus 10 ~G~IG~GKSTLa~~La~~l~-~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~-~i~drsI~eD 87 (216)
T COG1428 10 EGMIGAGKSTLAQALAEHLG-FKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKN-NILDRSIFED 87 (216)
T ss_pred ecccccCHHHHHHHHHHHhC-CceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccc-cccCcchhhh
Confidence 79999999999999988322 2222222222353 32221 45566677666655 555511
Q ss_pred c---------CCc---------------hhHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhcCCCc
Q psy6613 211 T---------INH---------------PSQLAKT-NLSP-CIVYLKISSPKVLQRLIKSRGKSQ 249 (510)
Q Consensus 211 ~---------qg~---------------~lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~Rgt~~ 249 (510)
. +|| +++.+-. ...| .+|||.. |+++|++|+..||.+-
T Consensus 88 ~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~-~~e~~l~RI~~RgR~~ 151 (216)
T COG1428 88 YFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDA-SLETLLRRIAKRGRPF 151 (216)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeC-CHHHHHHHHHHhCCCc
Confidence 1 110 0111111 1133 5677776 8999999999998643
No 149
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.79 E-value=0.58 Score=52.29 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=56.0
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHh------hhc-CC
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQL------AKT-NL 223 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~------lks-~l 223 (510)
+|++|+||||+.++++... .+...-+.+ ....+.-++.+.+.+++|+.||+|-.--. ...+ .+. ..
T Consensus 375 ~G~pGSGKST~A~~l~~~~-g~~~vn~D~-----lg~~~~~~~~a~~~L~~G~sVVIDaTn~~-~~~R~~~i~lAk~~gv 447 (526)
T TIGR01663 375 VGFPGAGKSHFCKKFFQPA-GYKHVNADT-----LGSTQNCLTACERALDQGKRCAIDNTNPD-AASRAKFLQCARAAGI 447 (526)
T ss_pred ECCCCCCHHHHHHHHHHHc-CCeEECcHH-----HHHHHHHHHHHHHHHhCCCcEEEECCCCC-HHHHHHHHHHHHHcCC
Confidence 9999999999999988721 122221111 11112345678889999999999986533 2111 112 23
Q ss_pred CceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 224 SPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 224 ~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
..++||+.. +.+++++|++.|..
T Consensus 448 ~v~~i~~~~-p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 448 PCRCFLFNA-PLAQAKHNIAFREL 470 (526)
T ss_pred eEEEEEeCC-CHHHHHHHHHhhcc
Confidence 344556665 48899999888754
No 150
>PHA00729 NTP-binding motif containing protein
Probab=93.75 E-value=0.13 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.5
Q ss_pred ceEEEEeCCCHHHHHHHHHhcCCC
Q psy6613 225 PCIVYLKISSPKVLQRLIKSRGKS 248 (510)
Q Consensus 225 PivIFIkPPS~e~L~~rLr~Rgt~ 248 (510)
..+|.+.+++.++|..+++.||-.
T Consensus 119 ~~l~il~~ls~edL~~~Lr~Rg~~ 142 (226)
T PHA00729 119 VSAVIFTTPSPEDLAFYLREKGWY 142 (226)
T ss_pred CcEEEEecCCHHHHHHHHHhCCCc
Confidence 456788888999999999999874
No 151
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.72 E-value=0.47 Score=45.45 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=47.4
Q ss_pred EecCcCChHHHHHHHhc-C-CCCceeeecCCCchh---hhhh-----------hc-----ccHHHHHHHHHcCCeEEEEe
Q psy6613 151 ITRVTADISLAKRSLMS-N-PSKRAIMERSNSRSS---VLTE-----------VQ-----TEIERVYELASTLQLVVLDC 209 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~-P~~F~~sVshTTR~p---Fe~~-----------I~-----TslesI~~vi~sGKi~ILDI 209 (510)
.|++|+||||+...++. . ...+...-+..-|.. +.+. .+ ..-..+..+++.|.++|+|.
T Consensus 21 aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~nii~E~ 100 (199)
T PF06414_consen 21 AGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENRYNIIFEG 100 (199)
T ss_dssp ES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT--EEEE-
T ss_pred eCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEec
Confidence 79999999999999888 5 444554444444433 1110 00 23345677889999999998
Q ss_pred ccCC--chh---Hhhhc-CCCceEEEEeCCCHHHHHHHHH
Q psy6613 210 DTIN--HPS---QLAKT-NLSPCIVYLKISSPKVLQRLIK 243 (510)
Q Consensus 210 D~qg--~~l---q~lks-~l~PivIFIkPPS~e~L~~rLr 243 (510)
.... .+. +.++. .+...++||..| .+.-..|..
T Consensus 101 tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~ 139 (199)
T PF06414_consen 101 TLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVR 139 (199)
T ss_dssp -TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHH
Confidence 6643 011 12233 566667777765 344444443
No 152
>KOG3347|consensus
Probab=93.51 E-value=1.7 Score=41.76 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred eE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh-----hhhhhc-------ccHHHHHHHHHcCCeEEEEeccCCch
Q psy6613 149 II-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-----VLTEVQ-------TEIERVYELASTLQLVVLDCDTINHP 215 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-----Fe~~I~-------TslesI~~vi~sGKi~ILDID~qg~~ 215 (510)
|+ .|-+|+||||+..+|-+.-+--.+.++.--+.. |.+... .-++.+...+.+|- +|+|-+.-+
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg-~IVDyHgCd-- 86 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG-NIVDYHGCD-- 86 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC-cEEeecccC--
Confidence 44 899999999999999873323344565544444 112211 45677777777765 455554433
Q ss_pred hHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCc
Q psy6613 216 SQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQ 249 (510)
Q Consensus 216 lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~ 249 (510)
+... -|+. ||+.--...+|-.||++||-+.
T Consensus 87 --~Fperwfdl--VvVLr~~~s~LY~RL~sRgY~e 117 (176)
T KOG3347|consen 87 --FFPERWFDL--VVVLRTPNSVLYDRLKSRGYSE 117 (176)
T ss_pred --ccchhheeE--EEEEecCchHHHHHHHHcCCCH
Confidence 3333 2333 4444444678999999999654
No 153
>COG0645 Predicted kinase [General function prediction only]
Probab=93.36 E-value=1.1 Score=43.12 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=82.6
Q ss_pred EecCcCChHHHHHHHhc-CCCCce---------eeecCCCchhh-------hhhhc-ccHHHHHHHHHcCCeEEEEeccC
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRA---------IMERSNSRSSV-------LTEVQ-TEIERVYELASTLQLVVLDCDTI 212 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~---------~sVshTTR~pF-------e~~I~-TslesI~~vi~sGKi~ILDID~q 212 (510)
.|=+|+||+|+...|-+ .+...- .-+|.-||.|+ ...++ .-...-..++..|..||||.-..
T Consensus 7 ~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VVlDa~~~ 86 (170)
T COG0645 7 GGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVVLDATFD 86 (170)
T ss_pred ecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEEEecccC
Confidence 78999999999999887 432211 12566677762 22222 33444567889999999999775
Q ss_pred CchhHhhh------cCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHH
Q psy6613 213 NHPSQLAK------TNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEH 286 (510)
Q Consensus 213 g~~lq~lk------s~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~e 286 (510)
- +.+.-. ..--++++|-..-..++++.|+..|.-+..+....=+ ..+..+....-.++.+.++...+....+
T Consensus 87 r-~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il-~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
T COG0645 87 R-PQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDIL-RVQLAEDEPWTEWETADTDTARTRDVSQ 164 (170)
T ss_pred C-HHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHH-HHHHhhhCCcccccchhhcccccccHHH
Confidence 4 222211 1223677777777899999999998653332222111 1122223334566777766665555666
Q ss_pred HH
Q psy6613 287 IA 288 (510)
Q Consensus 287 L~ 288 (510)
|.
T Consensus 165 l~ 166 (170)
T COG0645 165 LA 166 (170)
T ss_pred HH
Confidence 65
No 154
>KOG3557|consensus
Probab=93.32 E-value=0.028 Score=62.94 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=45.7
Q ss_pred eEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 48 ~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
-++..+|||.+.... +|+..+||+|+|++.. .+||..++. .|++|++|+.-+..
T Consensus 501 k~~~~~Ydf~arNs~-------ELsV~k~E~LEvl~d~-R~WW~~kn~--~G~~GyvP~nIL~~ 554 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSS-------ELSVKKGEVLEVLDDG-RKWWKVKNG--HGRAGYVPSNILAP 554 (721)
T ss_pred eeeeeehhhhcccch-------hhhhhhhhhhhhhhcc-ccceeccCc--cCCCCCcchhhhcc
Confidence 378899999999864 6999999999999864 579999873 57899999988765
No 155
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=93.25 E-value=0.64 Score=49.88 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=40.2
Q ss_pred CCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHH--HHHHHhcCCCCccEEEeCC-CHHHHHHHHHHHHHHHH
Q psy6613 223 LSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVA--AEKLAQCPQEMFDVILDEN-QLEDACEHIAEYLEAYW 295 (510)
Q Consensus 223 l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~a--a~eLEq~~~~~FD~VIvND-dLd~A~~eL~~ileai~ 295 (510)
+.-.+|||..|.-..+++.+..||.+ .+....++.. ..+-. ...-|+||.|+ +++....++..+++.+.
T Consensus 123 ~~D~iI~V~ap~e~ri~Rl~~rRg~s-~~~a~~ri~~Q~~~e~k---~~~AD~vIdN~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 123 LFHLVVVVDADVEVRVRRLVEQRGMA-EADARARIAAQASDEQR---RAVADVWLDNSGTPDELVEAVRALWADRL 194 (395)
T ss_pred hCCEEEEEECCHHHHHHHHHhcCCCC-HHHHHHHHHhcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 44688999997655555444445643 4444555522 11111 12348999876 57777777776665543
No 156
>KOG3354|consensus
Probab=93.24 E-value=1.2 Score=43.05 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=72.9
Q ss_pred CCCCCeE-EecCcCChHHHHHHHhc-CCCCceee-----------------ecCCCchhhhhhhcccHHHHHHHHHcCCe
Q psy6613 144 PSPGMII-ITRVTADISLAKRSLMS-NPSKRAIM-----------------ERSNSRSSVLTEVQTEIERVYELASTLQL 204 (510)
Q Consensus 144 Ps~~RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s-----------------VshTTR~pFe~~I~TslesI~~vi~sGKi 204 (510)
|...-++ .|++|+||||+-+.|.+ .--.|.-. ....-|=|....++ ...+..+.+|+.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~---~~~~~~l~~~q~ 86 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIA---VELRKALASGQG 86 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHH---HHHHHHhhcCCe
Confidence 5544555 99999999999998876 22122211 11111111222221 122333448999
Q ss_pred EEEEeccCC-chhHhhhcC-----------CCceEEEEeCCCHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHh--cC-
Q psy6613 205 VVLDCDTIN-HPSQLAKTN-----------LSPCIVYLKISSPKVLQRLIKSRGKSQ--TRHLNVQMVAAEKLAQ--CP- 267 (510)
Q Consensus 205 ~ILDID~qg-~~lq~lks~-----------l~PivIFIkPPS~e~L~~rLr~Rgt~~--~e~i~kRL~aa~eLEq--~~- 267 (510)
+||-|..-- ..-.+++.. -.-.+||+.. |.+++.+|+.+|..-- .+=+..++ .-||. +.
T Consensus 87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf---~~LE~p~~~e 162 (191)
T KOG3354|consen 87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQF---ATLEAPDADE 162 (191)
T ss_pred EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHH---HhccCCCCCc
Confidence 999886411 001122221 1235677777 9999999999885421 11111111 22332 11
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHH
Q psy6613 268 QEMFDVILDENQLEDACEHIAEYL 291 (510)
Q Consensus 268 ~~~FD~VIvNDdLd~A~~eL~~il 291 (510)
...|..-+.|-+.++.+..+.+.+
T Consensus 163 ~div~isv~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 163 EDIVTISVKTYSVEEIVDTIVKMV 186 (191)
T ss_pred cceEEEeeccCCHHHHHHHHHHHH
Confidence 134444555677777777666443
No 157
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=93.23 E-value=2.6 Score=41.11 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=15.6
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
-|..|+||||+.+.|.+
T Consensus 5 EG~~GsGKSTl~~~L~~ 21 (219)
T cd02030 5 DGNIASGKGKLAKELAE 21 (219)
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999998876
No 158
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=93.20 E-value=0.25 Score=47.44 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=36.2
Q ss_pred CCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCccEEEeCCC
Q psy6613 202 LQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFDVILDENQ 279 (510)
Q Consensus 202 GKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD~VIvNDd 279 (510)
.+.|++|+..-- +. .. .+.-.+|+|..|.-..+++.++++| -+.+.+..|+ .+...-+.. ..-|+||.|+.
T Consensus 104 ~~~~v~e~pLL~---E~-~~~~~~D~vi~V~a~~e~ri~Rl~~R~~-~~~~~~~~ri~~Q~~~~~k~--~~ad~vI~N~g 176 (180)
T PF01121_consen 104 EKVVVVEIPLLF---ES-GLEKLCDEVIVVYAPEEIRIKRLMERDG-LSEEEAEARIASQMPDEEKR--KRADFVIDNNG 176 (180)
T ss_dssp TSEEEEE-TTTT---TT-TGGGGSSEEEEEE--HHHHHHHHHHHHT-STHHHHHHHHHTS--HHHHH--HH-SEEEE-SS
T ss_pred CCEEEEEcchhh---hh-hHhhhhceEEEEECCHHHHHHHHHhhCC-CcHHHHHHHHHhCCCHHHHH--HhCCEEEECCC
Confidence 378999987521 11 11 3345788888875544555444444 4556677777 222211111 24599999975
No 159
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.98 Score=44.62 Aligned_cols=144 Identities=19% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCeE--EecCcCChHHHHHHHhc-CCCCceeeecCCCchhh----hh-----------hhc--------------ccHHH
Q psy6613 147 GMII--ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSV----LT-----------EVQ--------------TEIER 194 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pF----e~-----------~I~--------------Tsles 194 (510)
+..| =|.-|+||||+.+.|.+ .... ++.| .+||.|. -+ .+. .-.+.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~-g~~v-~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEER-GIKV-VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeE-EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444 49999999999998877 3222 1122 2566660 00 010 13344
Q ss_pred HHHHHHcCCeEEEEeccCCch-------------hHhhhc----CCCc-eEEEEeCCCHHHHHHHHHhcCCC-cH---HH
Q psy6613 195 VYELASTLQLVVLDCDTINHP-------------SQLAKT----NLSP-CIVYLKISSPKVLQRLIKSRGKS-QT---RH 252 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~-------------lq~lks----~l~P-ivIFIkPPS~e~L~~rLr~Rgt~-~~---e~ 252 (510)
|.-.++.|++||+|=-.-+.. +..++. .+.| ++||+..| .++-.+|+.+|+.. +. +.
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~~~~r~E~~~ 159 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGELRDRFEKED 159 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcCCccchhhhHH
Confidence 566778899999996432100 111111 2355 45555554 56666666666543 21 11
Q ss_pred --HHHHH-HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHHHHHHHH
Q psy6613 253 --LNVQM-VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAEYLEAYW 295 (510)
Q Consensus 253 --i~kRL-~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ileai~ 295 (510)
...+. +.-.++...+++ -++++ +.++++-.+++..+|...+
T Consensus 160 ~~f~~kvr~~Y~~la~~~~~--r~~vIda~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 160 DEFLEKVREGYLELAAKFPE--RIIVIDASRPLEEVHEEILKILKERL 205 (208)
T ss_pred HHHHHHHHHHHHHHHhhCCC--eEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 24444 444556655444 23333 4558888888887766554
No 160
>PRK07933 thymidylate kinase; Validated
Probab=93.12 E-value=1.3 Score=43.39 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
-|+-|+||||+.++|.+
T Consensus 6 EG~dGsGKST~~~~L~~ 22 (213)
T PRK07933 6 EGVDGAGKRTLTEALRA 22 (213)
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 79999999999998887
No 161
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.03 E-value=0.54 Score=43.41 Aligned_cols=20 Identities=5% Similarity=0.007 Sum_probs=17.2
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+||||+.+.|-+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 344 89999999999998876
No 162
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.72 E-value=1.4 Score=49.29 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=73.0
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCCCceee----ecCCCchh---hhh----hhc-ccHHHHHHHHHcCCeEEEEec---
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPSKRAIM----ERSNSRSS---VLT----EVQ-TEIERVYELASTLQLVVLDCD--- 210 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~s----VshTTR~p---Fe~----~I~-TslesI~~vi~sGKi~ILDID--- 210 (510)
+++ +|.+|+||||+-+.|-+ .--.|.-. ...+-++. |.+ .++ .+.+.+.+++... .||+-+-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~-~~VIs~GGG~ 86 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDF-DGIFSLGGGA 86 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEECCCch
Confidence 455 99999999999998876 21112211 11111111 221 111 4556667766543 4555442
Q ss_pred ---cCCchhHhhhc--CCCceEEEEeCCCHHHHHHHHHhcC---CC--cHHHHHHHH-HHHHHHHhcCCCCccEEEeCC-
Q psy6613 211 ---TINHPSQLAKT--NLSPCIVYLKISSPKVLQRLIKSRG---KS--QTRHLNVQM-VAAEKLAQCPQEMFDVILDEN- 278 (510)
Q Consensus 211 ---~qg~~lq~lks--~l~PivIFIkPPS~e~L~~rLr~Rg---t~--~~e~i~kRL-~aa~eLEq~~~~~FD~VIvND- 278 (510)
+++ .+.++. .-.-++||+..+ ++++.+|+.... .- ...+..+++ +.-..+ |....|++|.++
T Consensus 87 v~~~~n--~~~L~~~~~~~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~---Y~~~Ad~~i~~~~ 160 (542)
T PRK14021 87 PMTPST--QHALASYIAHGGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPV---FRQVANVHVHTRG 160 (542)
T ss_pred hCCHHH--HHHHHHHHhcCCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHH---HHhhCCEEEECCC
Confidence 233 333322 113478999885 788888875432 11 112223334 333333 334578888754
Q ss_pred -CHHHHHHHHHHHHH
Q psy6613 279 -QLEDACEHIAEYLE 292 (510)
Q Consensus 279 -dLd~A~~eL~~ile 292 (510)
+.+++++++.+++.
T Consensus 161 ~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 161 LTPQAAAKKLIDMVA 175 (542)
T ss_pred CCHHHHHHHHHHHHH
Confidence 57788888776554
No 163
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.56 E-value=0.082 Score=45.66 Aligned_cols=17 Identities=12% Similarity=-0.034 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+||||+.+.|.+
T Consensus 5 ~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999987
No 164
>KOG3079|consensus
Probab=92.45 E-value=1.3 Score=43.48 Aligned_cols=136 Identities=8% Similarity=0.156 Sum_probs=76.7
Q ss_pred EecCcCChHHHHHHHhc-CCCCce-eee---------c-CCCchhh-hhhhc----c----cHHHHHHHHHcCCe---EE
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRA-IME---------R-SNSRSSV-LTEVQ----T----EIERVYELASTLQL---VV 206 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~-~sV---------s-hTTR~pF-e~~I~----T----slesI~~vi~sGKi---~I 206 (510)
+|.+|+||.|.+.++.. ++ |+ ++. + ++++-.+ .+.+. . -++-+++.+.+-.. -|
T Consensus 14 lGGPGsgKgTqC~kiv~ky~--ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fL 91 (195)
T KOG3079|consen 14 LGGPGSGKGTQCEKIVEKYG--FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFL 91 (195)
T ss_pred EcCCCCCcchHHHHHHHHcC--ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 89999999999999998 54 32 111 0 2222211 11111 2 22333333333222 78
Q ss_pred EEeccCCchhHhhhc---CC---CceEEEEeCCCHHHHHHHHHhcCC------CcHHHHHHHHHHHHH-----HHh--cC
Q psy6613 207 LDCDTINHPSQLAKT---NL---SPCIVYLKISSPKVLQRLIKSRGK------SQTRHLNVQMVAAEK-----LAQ--CP 267 (510)
Q Consensus 207 LDID~qg~~lq~lks---~l---~PivIFIkPPS~e~L~~rLr~Rgt------~~~e~i~kRL~aa~e-----LEq--~~ 267 (510)
+|--|.. .+.... .+ .-+++|+-.| .++..+|+..||+ ++.+++.+|++.-.+ |+. .-
T Consensus 92 IDGyPR~--~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~k 168 (195)
T KOG3079|consen 92 IDGYPRN--VDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKK 168 (195)
T ss_pred ecCCCCC--hHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHcc
Confidence 8888877 555543 23 3578888886 4555556655554 456889999822211 222 11
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHH
Q psy6613 268 QEMFDVILDENQLEDACEHIAEYLE 292 (510)
Q Consensus 268 ~~~FD~VIvNDdLd~A~~eL~~ile 292 (510)
++.. .|=-+.+.|+.|.++...+.
T Consensus 169 g~l~-~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 169 GKLL-KINAERSVDDVFEEVVTAID 192 (195)
T ss_pred CcEE-EecCCCCHHHHHHHHHHHhh
Confidence 3333 33356789999999985543
No 165
>PRK00023 cmk cytidylate kinase; Provisional
Probab=92.41 E-value=4.2 Score=40.23 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=47.1
Q ss_pred CCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhc---C-CCcHHHHHHHHHHHHHHH--hcCC---CCcc
Q psy6613 202 LQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSR---G-KSQTRHLNVQMVAAEKLA--QCPQ---EMFD 272 (510)
Q Consensus 202 GKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~R---g-t~~~e~i~kRL~aa~eLE--q~~~---~~FD 272 (510)
...||++---.| .-++.. ..+.|||..|.....++|.+.+ | ..+.++..+.|...++.+ ..+. ..-|
T Consensus 122 ~~~~Vi~GR~~~--~~vl~~--a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d 197 (225)
T PRK00023 122 EPGLVMDGRDIG--TVVFPD--AELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAED 197 (225)
T ss_pred CCCEEEEecChh--eEEeCC--CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCC
Confidence 346777765333 222222 5678999998766655554432 2 233445555663333322 1111 1234
Q ss_pred EEEe-CC--CHHHHHHHHHHHHHH
Q psy6613 273 VILD-EN--QLEDACEHIAEYLEA 293 (510)
Q Consensus 273 ~VIv-ND--dLd~A~~eL~~ilea 293 (510)
++++ +. +++++++.+.+|++.
T Consensus 198 ~l~IDTs~l~~ee~v~~I~~~i~~ 221 (225)
T PRK00023 198 ALLLDTSGLSIEEVVEKILALVEE 221 (225)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Confidence 4444 44 578888888877753
No 166
>KOG2222|consensus
Probab=92.40 E-value=0.06 Score=58.80 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=41.2
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecCh
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~ 107 (510)
.||+.||.-.+|+ +|.|+++||+.|+...|+.+|-|.. +|-.|++|.+
T Consensus 551 akal~df~r~ddd-------elgfrkndiitiisekdehcwvgel---nglrgwfpak 598 (848)
T KOG2222|consen 551 AKALHDFAREDDD-------ELGFRKNDIITIISEKDEHCWVGEL---NGLRGWFPAK 598 (848)
T ss_pred HHHHhhhhhcccc-------ccccccccEEEEeecCCcceeeecc---ccccccchHH
Confidence 4677788777665 5999999999999999999999988 5788999965
No 167
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.28 E-value=0.66 Score=44.84 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHcCCeEEEEeccCC-ch-hHhhhcCCCceEEEEeCCCHHHHHHH
Q psy6613 190 TEIERVYELASTLQLVVLDCDTIN-HP-SQLAKTNLSPCIVYLKISSPKVLQRL 241 (510)
Q Consensus 190 TslesI~~vi~sGKi~ILDID~qg-~~-lq~lks~l~PivIFIkPPS~e~L~~r 241 (510)
.=.+.|++++.+++.+|.-++-.. || ++.++ .+..++|||.|-+.+.+-..
T Consensus 118 ~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik-~~~~v~v~lt~~NR~~i~~~ 170 (179)
T COG1618 118 KFREAVEEVLKSGKPLIATLHRRSRHPLVQRIK-KLGGVYVFLTPENRNRILNE 170 (179)
T ss_pred HHHHHHHHHhcCCCcEEEEEecccCChHHHHhh-hcCCEEEEEccchhhHHHHH
Confidence 345788999999999998888542 12 22222 46678888998887754433
No 168
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.24 E-value=0.98 Score=41.54 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=47.8
Q ss_pred EEecCcCChHHHHHHHhc-C--CCCceeeec-CCCchh------hh-----hhhcccHHHHHHHHHcCCeEEEEeccCCc
Q psy6613 150 IITRVTADISLAKRSLMS-N--PSKRAIMER-SNSRSS------VL-----TEVQTEIERVYELASTLQLVVLDCDTINH 214 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~--P~~F~~sVs-hTTR~p------Fe-----~~I~TslesI~~vi~sGKi~ILDID~qg~ 214 (510)
|+|++|+||||+.+.|.. . +..-.+.+. ..-|.. +. +.+..-....+.+.++|.+||+|.-...
T Consensus 4 i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~~~- 82 (149)
T cd02027 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFISPY- 82 (149)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCCCC-
Confidence 389999999999998877 3 221122221 111211 00 0000111223346678999999975432
Q ss_pred hhHh--hhc---CCCceEEEEeCCCHHHHHHH
Q psy6613 215 PSQL--AKT---NLSPCIVYLKISSPKVLQRL 241 (510)
Q Consensus 215 ~lq~--lks---~l~PivIFIkPPS~e~L~~r 241 (510)
.... ++. ...-.+||+.+| .+++.+|
T Consensus 83 ~~~R~~~~~l~~~~~~~~i~l~~~-~e~~~~R 113 (149)
T cd02027 83 REDREAARKIIGGGDFLEVFVDTP-LEVCEQR 113 (149)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHh
Confidence 1111 111 234567888887 6666666
No 169
>PRK12288 GTPase RsgA; Reviewed
Probab=92.18 E-value=0.097 Score=55.30 Aligned_cols=34 Identities=6% Similarity=-0.024 Sum_probs=24.0
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeec-------CCCchh
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMER-------SNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVs-------hTTR~p 183 (510)
|+|+||||||||++.|+.....-.-.|| |||+..
T Consensus 210 ~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~ 250 (347)
T PRK12288 210 FVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAA 250 (347)
T ss_pred EECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeE
Confidence 3999999999999999973222222343 677764
No 170
>PRK00098 GTPase RsgA; Reviewed
Probab=92.06 E-value=0.12 Score=53.02 Aligned_cols=32 Identities=9% Similarity=-0.127 Sum_probs=23.8
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeec-------CCCchh
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMER-------SNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVs-------hTTR~p 183 (510)
+|++|||||||.+.|+. .... .-.|+ ||||..
T Consensus 170 ~G~sgvGKStlin~l~~~~~~~-~g~v~~~~~~G~htT~~~ 209 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDLELK-TGEISEALGRGKHTTTHV 209 (298)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC-CcceeccCCCCCcccccE
Confidence 99999999999999987 3322 22333 788865
No 171
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.05 E-value=1.7 Score=46.90 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCCC-eE-EecCcCChHHHHHHHhcC-CCCceeeecCCCchhhhhh---------------h-cccHHHH-HHHHHcCC
Q psy6613 144 PSPGM-II-ITRVTADISLAKRSLMSN-PSKRAIMERSNSRSSVLTE---------------V-QTEIERV-YELASTLQ 203 (510)
Q Consensus 144 Ps~~R-pI-~GPsGvGKsTL~~rLL~~-P~~F~~sVshTTR~pFe~~---------------I-~TslesI-~~vi~sGK 203 (510)
|++.+ ++ +|++|+|||||.+.|..+ .-. .++--.|.-.++. + .....++ ..+....+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~---~v~E~~R~~~~~~~~~~~~~l~~~D~~~ia~~~~~~~~~~~~~a~~ 292 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT---SAWEYGREYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANK 292 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC---eeeeccHHHHHHhhcCCccCCChhhhHHHHhhhHHHHHHHHHhcCC
Confidence 34444 43 999999999999999872 211 1222233221110 0 0111122 23344588
Q ss_pred eEEEEeccCCchhHh-hhc---CCCc----------e-EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHH-HHhc
Q psy6613 204 LVVLDCDTINHPSQL-AKT---NLSP----------C-IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEK-LAQC 266 (510)
Q Consensus 204 i~ILDID~qg~~lq~-lks---~l~P----------i-vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~e-LEq~ 266 (510)
++++|.|.-. ... .+. .-.| + .||+.+|+..-...=++.. ..++....+ ..-.+ ++.
T Consensus 293 ~~f~Dt~~~~--t~~y~~~y~g~~~p~l~~~~~~~ryDlvlll~pd~Pwv~DGlR~~---~D~e~R~~f~~~l~~~l~~- 366 (399)
T PRK08099 293 VAFIDTDFVT--TQAFCKKYEGREHPFVQALIDEYRFDLTILLENNTPWVADGLRSL---GSSVDRKRFQNLLKEMLKE- 366 (399)
T ss_pred eEEEeCChHH--HHHHHHHhCCCCCHHHHHHHHhCCCCEEEEcCCCCCcccCCcccC---CCHHHHHHHHHHHHHHHHH-
Confidence 9999998644 221 111 0011 1 4566655432222211111 123333344 22222 333
Q ss_pred CCCCccEEEeC-CCHHHHHHHHHHHHHHHHHh
Q psy6613 267 PQEMFDVILDE-NQLEDACEHIAEYLEAYWRA 297 (510)
Q Consensus 267 ~~~~FD~VIvN-DdLd~A~~eL~~ileai~~a 297 (510)
..+.+++++ .+.++=+.+-.++|+.+...
T Consensus 367 --~g~~~v~l~~g~~~eR~~~a~~~i~~~l~~ 396 (399)
T PRK08099 367 --NNIEYVHVESPDYDKRYLRCVELVDQMLGE 396 (399)
T ss_pred --cCCCEEEECCCCHHHHHHHHHHHHHHHhhc
Confidence 467899995 79888888888777776554
No 172
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.99 E-value=0.15 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=24.2
Q ss_pred EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613 150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p 183 (510)
|+|++|+|||||.+.|+. +. .-....+.||+.+
T Consensus 4 iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~ 37 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDP 37 (116)
T ss_dssp EEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSE
T ss_pred EECCCCCCHHHHHHHHhcccc-ccccccccceeee
Confidence 399999999999999997 32 1233346777765
No 173
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.69 E-value=0.41 Score=48.37 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+++.+
T Consensus 21 I~G~~G~GKTTLlr~I~n 38 (249)
T cd01128 21 IVAPPKAGKTTLLQSIAN 38 (249)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 499999999999999997
No 174
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=91.63 E-value=0.13 Score=51.46 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+||||||||++.|+.
T Consensus 126 ~G~sgvGKStLiN~L~~ 142 (245)
T TIGR00157 126 AGQSGVGKSSLINALDP 142 (245)
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 99999999999999996
No 175
>PRK06620 hypothetical protein; Validated
Probab=91.39 E-value=0.67 Score=45.49 Aligned_cols=95 Identities=7% Similarity=0.077 Sum_probs=51.4
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeecCCCchh-------hhhhhc----ccH-HHHHHHHHcCCeEEEEeccCCchh-
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS-------VLTEVQ----TEI-ERVYELASTLQLVVLDCDTINHPS- 216 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p-------Fe~~I~----Tsl-esI~~vi~sGKi~ILDID~qg~~l- 216 (510)
+.||+|+|||+|.+-+.+.+..+........... +..+|+ ..+ .-+..+.+.|+.+|+-.+....-+
T Consensus 49 l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 49 IKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFT 128 (214)
T ss_pred EECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccc
Confidence 3999999999999865554433221111001100 112222 112 223344578888888887433112
Q ss_pred -HhhhcCC-CceEEEEeCCCHHHHHHHHHh
Q psy6613 217 -QLAKTNL-SPCIVYLKISSPKVLQRLIKS 244 (510)
Q Consensus 217 -q~lks~l-~PivIFIkPPS~e~L~~rLr~ 244 (510)
.-+++-+ .-.++=|.||+.+.+...+++
T Consensus 129 l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 129 LPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred hHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 2244433 355778888888776666643
No 176
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.38 E-value=0.13 Score=44.00 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=18.0
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
|++ +|+.|||||||+++|+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhc
Confidence 345 99999999999999998
No 177
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.33 E-value=0.24 Score=42.67 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
+.||+|+|||++.+.|.+
T Consensus 3 l~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EESSTTSSHHHHHHHHHH
T ss_pred EECcCCCCeeHHHHHHHh
Confidence 489999999999999988
No 178
>PRK12289 GTPase RsgA; Reviewed
Probab=91.24 E-value=0.16 Score=53.81 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=23.6
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeec-------CCCchh
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMER-------SNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVs-------hTTR~p 183 (510)
+|+||||||||++.|+.....-...|| ||||..
T Consensus 178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~ 217 (352)
T PRK12289 178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV 217 (352)
T ss_pred EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee
Confidence 999999999999999962222223344 588865
No 179
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.23 E-value=2.1 Score=42.07 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=57.0
Q ss_pred HHHHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCCCcc
Q psy6613 194 RVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQEMFD 272 (510)
Q Consensus 194 sI~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~~FD 272 (510)
.+.+..+++ .|++|+..-- +.-....-.++|.|-.|.--.++ |+..|+..+.+....++ .+...-|.. ..=|
T Consensus 98 ~~~~~~~~~-~~~~eiplL~---e~~~~~~~d~Vi~V~a~~e~r~e-Rl~~R~~~~~e~~~~~~~~Q~~~~ek~--~~ad 170 (201)
T COG0237 98 VVIDGARSP-YVVLEIPLLF---EAGGEKYFDKVIVVYAPPEIRLE-RLMKRDGLDEEDAEARLASQRDLEEKL--ALAD 170 (201)
T ss_pred HHHHHhhCC-ceEEEchHHH---hccccccCCEEEEEECCHHHHHH-HHHhcCCCCHHHHHHHHHhcCCHHHHH--hhcC
Confidence 344445555 8999986521 11111223467777776554444 55566656656666666 333222332 4558
Q ss_pred EEEeCC-CHHHHHHHHHHHHHHHHHh
Q psy6613 273 VILDEN-QLEDACEHIAEYLEAYWRA 297 (510)
Q Consensus 273 ~VIvND-dLd~A~~eL~~ileai~~a 297 (510)
+||.|| ++++.++++...+..+...
T Consensus 171 ~vi~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 171 VVIDNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred ChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 999875 5888888988777776654
No 180
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.17 E-value=1.3 Score=44.24 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=38.9
Q ss_pred CCCceEEEEeCCCHHHHHHHHH----hcCCCcHHHHHHHH-HHHHHHHhc----CCCCccEEEe-CCCHHHHHHHHHHHH
Q psy6613 222 NLSPCIVYLKISSPKVLQRLIK----SRGKSQTRHLNVQM-VAAEKLAQC----PQEMFDVILD-ENQLEDACEHIAEYL 291 (510)
Q Consensus 222 ~l~PivIFIkPPS~e~L~~rLr----~Rgt~~~e~i~kRL-~aa~eLEq~----~~~~FD~VIv-NDdLd~A~~eL~~il 291 (510)
.+.-+-|||-.|.-..|.+|+. .||.+-+ ....+. ....-+... ..++=|.+|- ...=..|+..|...|
T Consensus 126 ~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e-~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I 204 (218)
T COG0572 126 DLMDLKIFVDTDADVRLIRRIKRDVQERGRDLE-SVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKI 204 (218)
T ss_pred hhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHH-HHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHH
Confidence 4556789999998777777764 4665543 333343 222222221 1344566663 223344555566555
Q ss_pred HHHH
Q psy6613 292 EAYW 295 (510)
Q Consensus 292 eai~ 295 (510)
+.++
T Consensus 205 ~~~~ 208 (218)
T COG0572 205 ASSL 208 (218)
T ss_pred HHHh
Confidence 5544
No 181
>KOG4773|consensus
Probab=91.09 E-value=0.049 Score=57.34 Aligned_cols=48 Identities=10% Similarity=0.403 Sum_probs=41.3
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecCh
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~ 107 (510)
.+|.|||.+... .+|.|.+|||..++..++.+||.|+. .+.+|++|-.
T Consensus 178 ~~a~~df~gns~-------~EL~l~agdV~~~~~r~ek~W~~gk~---R~~~g~yp~s 225 (386)
T KOG4773|consen 178 AEASFDFPGNSK-------LELNLVAGDVEFLLSRDEKYWLLGKV---RGLTGYYPDS 225 (386)
T ss_pred HHhhccCCCCcc-------ceeeeehhhHHHHHhhcccceeeeee---ccccccccHH
Confidence 568899999875 47999999999999999999999987 4678998854
No 182
>PLN02199 shikimate kinase
Probab=91.02 E-value=2.5 Score=44.26 Aligned_cols=139 Identities=8% Similarity=0.017 Sum_probs=73.6
Q ss_pred eE-EecCcCChHHHHHHHhc-CCCCceee---ecC-CCchh----hhh---hhc--ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613 149 II-ITRVTADISLAKRSLMS-NPSKRAIM---ERS-NSRSS----VLT---EVQ--TEIERVYELASTLQLVVLDCDTIN 213 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~-~P~~F~~s---Vsh-TTR~p----Fe~---~I~--TslesI~~vi~sGKi~ILDID~qg 213 (510)
++ +|.+|+||||+.+.|-+ .--.|.-+ +-+ ++... |+. ... .+.+.+.++.... .||+-+-. |
T Consensus 105 I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~-~~VIStGG-G 182 (303)
T PLN02199 105 MYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY-QVVVSTGG-G 182 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-CEEEECCC-c
Confidence 44 99999999999998875 21112211 111 11111 211 111 4555666665544 56665533 2
Q ss_pred ch-----hHhhhcCCCceEEEEeCCCHHHHHHHHHh-----cCCC---cHH------HHHHHH-HHHHHHHhcCCCCccE
Q psy6613 214 HP-----SQLAKTNLSPCIVYLKISSPKVLQRLIKS-----RGKS---QTR------HLNVQM-VAAEKLAQCPQEMFDV 273 (510)
Q Consensus 214 ~~-----lq~lks~l~PivIFIkPPS~e~L~~rLr~-----Rgt~---~~e------~i~kRL-~aa~eLEq~~~~~FD~ 273 (510)
.+ .+.++ .-++||+..| +++|.+|+.. |..- +.+ ....+| +.-..+ |.. -|+
T Consensus 183 ~V~~~~n~~~L~---~G~vV~Ldas-~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl---Y~~-Ad~ 254 (303)
T PLN02199 183 AVIRPINWKYMH---KGISIWLDVP-LEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA---YTN-ANA 254 (303)
T ss_pred ccCCHHHHHHHh---CCeEEEEECC-HHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH---HHh-CCE
Confidence 01 11122 4688999986 7888888874 2211 111 112222 222222 333 688
Q ss_pred EEe--------------CCCHHHHHHHHHHHHHHHHHh
Q psy6613 274 ILD--------------ENQLEDACEHIAEYLEAYWRA 297 (510)
Q Consensus 274 VIv--------------NDdLd~A~~eL~~ileai~~a 297 (510)
+|. +-+.++.+.++.+.+..+.+-
T Consensus 255 ~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~ 292 (303)
T PLN02199 255 RVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK 292 (303)
T ss_pred EEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 887 455667777877777766653
No 183
>KOG3601|consensus
Probab=91.02 E-value=0.048 Score=53.96 Aligned_cols=48 Identities=29% Similarity=0.443 Sum_probs=39.0
Q ss_pred EeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhH
Q psy6613 52 TNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVK 109 (510)
Q Consensus 52 AlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~ 109 (510)
|++++-...++ +|+|.+||+|.|++.+ +.||..+.. +|..|+||++.-
T Consensus 5 a~n~f~a~i~d-------ELsFlkg~~lk~l~~~d~~nw~~ael---~g~~g~~P~Nai 53 (222)
T KOG3601|consen 5 AKNDFLAGIRD-------ELSFLKGDNLKILNMEDDINWYKAEL---DGPEGFIPKNAI 53 (222)
T ss_pred hhhhhhhcCcc-------cceeecCCceEecchHHhhhhhhHhh---cCccccCccccc
Confidence 56777777665 5999999999999985 458999987 568899998765
No 184
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.97 E-value=0.16 Score=46.46 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=25.6
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
++|++|||||||.+.|+....-....+|.|||..
T Consensus 107 ~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~ 140 (157)
T cd01858 107 FIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW 140 (157)
T ss_pred EEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE
Confidence 3999999999999999873323444567778764
No 185
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=90.90 E-value=3.3 Score=42.81 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=58.6
Q ss_pred HHHHHHcCCeEEEEeccCCchhHhhhc-C--CCceEEEEeCCCHHHHHHHHHhcCCCcH-----H------HHHHHH-HH
Q psy6613 195 VYELASTLQLVVLDCDTINHPSQLAKT-N--LSPCIVYLKISSPKVLQRLIKSRGKSQT-----R------HLNVQM-VA 259 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~lq~lks-~--l~PivIFIkPPS~e~L~~rLr~Rgt~~~-----e------~i~kRL-~a 259 (510)
|.+.+..|..+|++-=.-- =.+++. . .+.+..|+..++.+..+.|...|...+. . ...+.| +-
T Consensus 179 I~RAi~eG~~lIIEGvHlV--Pg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dy 256 (299)
T COG2074 179 IERAIEEGEDLIIEGVHLV--PGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDY 256 (299)
T ss_pred HHHHHhcCcceEEEeeeec--cccccHhhhccceEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 5678899999999864322 123343 2 3456788889999999999987765431 1 111122 22
Q ss_pred HHHHHhcCCCCccE-EEeCCCHHHHHHHHHHHHHH
Q psy6613 260 AEKLAQCPQEMFDV-ILDENQLEDACEHIAEYLEA 293 (510)
Q Consensus 260 a~eLEq~~~~~FD~-VIvNDdLd~A~~eL~~ilea 293 (510)
..+.. ..|+. ||.|+|++.|..++.++|..
T Consensus 257 l~~~A----re~gVPvI~n~di~etv~~il~~i~~ 287 (299)
T COG2074 257 LVERA----REHGVPVIENDDIDETVDRILEDIRK 287 (299)
T ss_pred HHHHH----HhcCCCeeccccHHHHHHHHHHHHHH
Confidence 22222 23343 67899999999999877643
No 186
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.90 E-value=0.93 Score=46.26 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCceEEEEeCCCHHHHHHHH----HhcCCCcHHHHHHHHHHHHHHHhc----CCCCccEEEeCC
Q psy6613 223 LSPCIVYLKISSPKVLQRLI----KSRGKSQTRHLNVQMVAAEKLAQC----PQEMFDVILDEN 278 (510)
Q Consensus 223 l~PivIFIkPPS~e~L~~rL----r~Rgt~~~e~i~kRL~aa~eLEq~----~~~~FD~VIvND 278 (510)
+.-+.|||.+|.-..+++++ +.||. +.+++..++.+....... ....-|+||.++
T Consensus 115 ~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~-s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 115 LLDFSVYLDISDEVKFAWKIQRDMAERGH-SLEDVLASIEARKPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hccEEEEEECChhHHHHHHHHHHHHHhCC-CHHHHHHHHHhhchhHHHHhccccccCcEEEEcc
Confidence 45688999999877655433 23453 445566666322211111 135668888554
No 187
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=90.80 E-value=0.17 Score=50.87 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=26.8
Q ss_pred CCeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 147 GMII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
|++. +|++|||||||.+.|+...-......++|||..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~ 38 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR 38 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc
Confidence 3455 999999999999999972112233467899875
No 188
>PLN02840 tRNA dimethylallyltransferase
Probab=90.78 E-value=0.36 Score=52.50 Aligned_cols=61 Identities=13% Similarity=-0.015 Sum_probs=42.0
Q ss_pred EecCcCChHHHHHHHhc-CCCC--------ceeeecCCCchhhhhh---h--------------------cccHHHHHHH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSK--------RAIMERSNSRSSVLTE---V--------------------QTEIERVYEL 198 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~--------F~~sVshTTR~pFe~~---I--------------------~TslesI~~v 198 (510)
+||+|+|||||...|.+ .... +..-.+.+|.+|-.++ | ..-.+.|.++
T Consensus 27 ~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A~~~I~~i 106 (421)
T PLN02840 27 SGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDARRATQDI 106 (421)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHHHHHHHHH
Confidence 89999999999999987 4322 2223445677771111 0 0467888999
Q ss_pred HHcCCeEEEEecc
Q psy6613 199 ASTLQLVVLDCDT 211 (510)
Q Consensus 199 i~sGKi~ILDID~ 211 (510)
.+.|+++||---.
T Consensus 107 ~~rgkiPIvVGGT 119 (421)
T PLN02840 107 LNRGRVPIVAGGT 119 (421)
T ss_pred HhcCCCEEEEcCc
Confidence 9999999985533
No 189
>PLN02165 adenylate isopentenyltransferase
Probab=90.74 E-value=1.6 Score=46.18 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=18.2
Q ss_pred CCCeE--EecCcCChHHHHHHHhc
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
.+.+| +||+|+|||+|...|..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 44444 99999999999998877
No 190
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.55 E-value=0.36 Score=45.46 Aligned_cols=39 Identities=33% Similarity=0.590 Sum_probs=29.9
Q ss_pred CCcceEEeCCCCCCchhHHHHHHHHHHHHhhhcCCcEEEEEEec
Q psy6613 414 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTA 457 (510)
Q Consensus 414 ~~rp~~~~gp~~~~~~~~~~m~~al~~~l~~~f~~~i~~~~~~~ 457 (510)
..|||||+|||-.| .+.+.++|+.-+.++|. ..|+..|.
T Consensus 1 ~~r~ivl~Gpsg~G---K~~l~~~L~~~~~~~~~--~~v~~TTR 39 (183)
T PF00625_consen 1 KRRPIVLVGPSGSG---KSTLAKRLIQEFPDKFG--RVVSHTTR 39 (183)
T ss_dssp SSSEEEEESSTTSS---HHHHHHHHHHHSTTTEE--EEEEEESS
T ss_pred CCCEEEEECCCCCC---HHHHHHHHHHhcccccc--cceeeccc
Confidence 36999999999999 67777777777777773 45556554
No 191
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=90.39 E-value=4.2 Score=38.38 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=50.3
Q ss_pred EecCcCChHHHHHHHh-c-CCC-CceeeecCCCchhhhhh--------hc---------c----cHHHHHHHHHcC----
Q psy6613 151 ITRVTADISLAKRSLM-S-NPS-KRAIMERSNSRSSVLTE--------VQ---------T----EIERVYELASTL---- 202 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL-~-~P~-~F~~sVshTTR~pFe~~--------I~---------T----slesI~~vi~sG---- 202 (510)
.|..|+||||+.++|+ . ..+ +.++.+-.--....++. +. | -...+.++....
T Consensus 6 ~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~~ 85 (178)
T PF02492_consen 6 TGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEERP 85 (178)
T ss_dssp EESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC-
T ss_pred EcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCCc
Confidence 8999999999999999 4 333 33333332222221110 00 2 346777777777
Q ss_pred CeEEEEeccCCchhHhh------hc--CCCceEEEEeCCCH
Q psy6613 203 QLVVLDCDTINHPSQLA------KT--NLSPCIVYLKISSP 235 (510)
Q Consensus 203 Ki~ILDID~qg~~lq~l------ks--~l~PivIFIkPPS~ 235 (510)
..+|++..--++|..++ .. .+.+++.-|-+.++
T Consensus 86 d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~ 126 (178)
T PF02492_consen 86 DRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF 126 (178)
T ss_dssp SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH
T ss_pred CEEEECCccccccchhhhccccccccccccceeEEeccccc
Confidence 66777776666665552 11 45667777777776
No 192
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.34 E-value=0.22 Score=47.41 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+||||||||++.|+.
T Consensus 41 ~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLP 57 (161)
T ss_dssp ECSTTSSHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999999997
No 193
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=90.01 E-value=6.8 Score=38.68 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=46.8
Q ss_pred HHHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC---C-cHHHHHHHHHHHHHH------H
Q psy6613 195 VYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK---S-QTRHLNVQMVAAEKL------A 264 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt---~-~~e~i~kRL~aa~eL------E 264 (510)
++++++.| .||+|---.| .-++. -..+.||+..|-....++|...... + +.+++.+.+..-+++ .
T Consensus 114 qr~~a~~~-~~Vi~Gr~~~--~~v~~--~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~ 188 (217)
T TIGR00017 114 QQALAKND-GIIADGRDIG--TVVFP--NAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVA 188 (217)
T ss_pred HHHHhhcC-CEEEEEcCcc--eEEeC--CCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccC
Confidence 44445444 6888876545 12222 2568899999887777766544321 2 235555555333222 1
Q ss_pred hcCCCCccEEEeCCC--HHHHHHHHH
Q psy6613 265 QCPQEMFDVILDENQ--LEDACEHIA 288 (510)
Q Consensus 265 q~~~~~FD~VIvNDd--Ld~A~~eL~ 288 (510)
-.....++.+|.+++ ++++++.+.
T Consensus 189 ~~~~a~~~i~Idts~l~ieevv~~I~ 214 (217)
T TIGR00017 189 PLKKADDALYLDTSNLSIDEVVEKIL 214 (217)
T ss_pred cccCCCCeEEEECCCCCHHHHHHHHH
Confidence 111233445555443 666666665
No 194
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.92 E-value=0.72 Score=45.39 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+||||+.+.+..
T Consensus 49 ~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 49 TGEVGAGKTTLIRNLLK 65 (269)
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 99999999999999987
No 195
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.54 E-value=1.4 Score=47.34 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.8
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||+|+||||+.+.|.+
T Consensus 40 lL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 40 ILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999998887
No 196
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=89.51 E-value=1.8 Score=47.93 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=46.4
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecC------CCchh---hhh---hhc--ccHHHHHHHHHcCCeEEEEec------
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERS------NSRSS---VLT---EVQ--TEIERVYELASTLQLVVLDCD------ 210 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVsh------TTR~p---Fe~---~I~--TslesI~~vi~sGKi~ILDID------ 210 (510)
+|++|+||||+.+.|-+.- .+.+.-.. +-.+. |.. ... .+.+.+++++..+ .+|+.+.
T Consensus 6 ~G~~GsGKSTv~~~La~~l-g~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~-~~Vis~Gggvv~~ 83 (488)
T PRK13951 6 VGMMGSGKSTIGKRVSEVL-DLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERD-NVVVATGGGVVID 83 (488)
T ss_pred ECCCCCCHHHHHHHHHHHc-CCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcC-CEEEECCCccccC
Confidence 8999999999999887521 12211111 00000 111 001 3445555555443 4555543
Q ss_pred cCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 211 TINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 211 ~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
..+ .+.++. -.+||+.. +.+++.+|+..++.
T Consensus 84 ~~~--r~~l~~---~~vI~L~a-s~e~l~~Rl~~~~R 114 (488)
T PRK13951 84 PEN--RELLKK---EKTLFLYA-PPEVLMERVTTENR 114 (488)
T ss_pred hHH--HHHHhc---CeEEEEEC-CHHHHHHHhccCCC
Confidence 112 333432 23666555 48999999976543
No 197
>KOG3632|consensus
Probab=89.44 E-value=0.21 Score=58.57 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=46.2
Q ss_pred EEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhHHH
Q psy6613 51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
-|.|||++++.+--=--++.|.|..|||+.|..+. |++++-|.+ +|..|++||.-+.+
T Consensus 1248 vaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGel---ngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1248 VAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGEL---NGQKGLVPSNFLEA 1306 (1335)
T ss_pred hhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccccccc---CCccCccccccccC
Confidence 38899999987644345689999999999999985 556777766 57899999987655
No 198
>COG1162 Predicted GTPases [General function prediction only]
Probab=89.17 E-value=0.23 Score=51.79 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=16.1
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+||||||||.++|..
T Consensus 170 ~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 170 LGQSGVGKSTLINALLP 186 (301)
T ss_pred ECCCCCcHHHHHHhhCc
Confidence 99999999999999985
No 199
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=89.12 E-value=0.27 Score=43.07 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.0
Q ss_pred CeE-EecCcCChHHHHHHHhcC
Q psy6613 148 MII-ITRVTADISLAKRSLMSN 168 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~ 168 (510)
++. +|+.|+||||+.++|+..
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 344 999999999999999873
No 200
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=88.95 E-value=2.2 Score=48.42 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCeE--EecCcCChHHHHHHHhcC--CCC--ceeeecCCCchhhh-------h----hhcccHHHHHHHHHcCCeEEEEe
Q psy6613 147 GMII--ITRVTADISLAKRSLMSN--PSK--RAIMERSNSRSSVL-------T----EVQTEIERVYELASTLQLVVLDC 209 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~~--P~~--F~~sVshTTR~pFe-------~----~I~TslesI~~vi~sGKi~ILDI 209 (510)
+.+| .|.+|+||||+.+.|... ... ..+.-..+-|+.+. + .+..-.+......+.|.++|+|.
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vivda 539 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVLVSF 539 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4444 899999999999887752 111 11222233333211 0 01112233344568899999997
Q ss_pred ccCC-chhHhhhcCC--Cc-eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC--CCCccEEEeCC--CHH
Q psy6613 210 DTIN-HPSQLAKTNL--SP-CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP--QEMFDVILDEN--QLE 281 (510)
Q Consensus 210 D~qg-~~lq~lks~l--~P-ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~eLEq~~--~~~FD~VIvND--dLd 281 (510)
-..- ...+..+... .+ ++||+..| .+++.+|. .|+--... ....+.....+...| +..-|++|.++ +++
T Consensus 540 ~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~-~r~L~~~~-~~~~l~~l~~~r~~y~~P~~a~~~Id~~~~s~~ 616 (632)
T PRK05506 540 ISPFREERELARALHGEGEFVEVFVDTP-LEVCEARD-PKGLYAKA-RAGEIKNFTGIDSPYEAPENPELRLDTTGRSPE 616 (632)
T ss_pred CCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhC-Ccchhhhc-cccccccccccccCCCCCCCCeEEEeCCCCCHH
Confidence 4211 0112222212 24 56666665 67777773 23321100 000110000111112 24467888764 588
Q ss_pred HHHHHHHHHHH
Q psy6613 282 DACEHIAEYLE 292 (510)
Q Consensus 282 ~A~~eL~~ile 292 (510)
++++++.++|.
T Consensus 617 e~v~~Ii~~l~ 627 (632)
T PRK05506 617 ELAEQVLELLR 627 (632)
T ss_pred HHHHHHHHHHH
Confidence 88888875553
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.84 E-value=0.78 Score=39.00 Aligned_cols=18 Identities=6% Similarity=0.062 Sum_probs=16.6
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|.||+|+|||++.+.+..
T Consensus 24 i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 24 LYGPPGTGKTTLARAIAN 41 (151)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 399999999999999887
No 202
>PRK09087 hypothetical protein; Validated
Probab=88.77 E-value=1.5 Score=43.47 Aligned_cols=93 Identities=8% Similarity=0.076 Sum_probs=53.5
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeec--CCCch-------h-hhhhhc-------ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMER--SNSRS-------S-VLTEVQ-------TEIERVYELASTLQLVVLDCDTIN 213 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVs--hTTR~-------p-Fe~~I~-------TslesI~~vi~sGKi~ILDID~qg 213 (510)
.||+|+|||+|.+-+.+... ..+.-+ .+... . ...+++ .-.+.+..+.+.|+.+|+-.+...
T Consensus 50 ~G~~GsGKThLl~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p 128 (226)
T PRK09087 50 AGPVGSGKTHLASIWREKSD-ALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWP 128 (226)
T ss_pred ECCCCCCHHHHHHHHHHhcC-CEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCCh
Confidence 99999999999997765321 111111 01100 0 001111 223445566677999999887432
Q ss_pred ch----hHhhhcCC-CceEEEEeCCCHHHHHHHHHh
Q psy6613 214 HP----SQLAKTNL-SPCIVYLKISSPKVLQRLIKS 244 (510)
Q Consensus 214 ~~----lq~lks~l-~PivIFIkPPS~e~L~~rLr~ 244 (510)
.- ..-+++.+ ...+|=|.||+.+.+...+++
T Consensus 129 ~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 129 SSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred HHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 10 12244423 567899999998887777654
No 203
>PLN02318 phosphoribulokinase/uridine kinase
Probab=88.76 E-value=1.5 Score=49.97 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.8
Q ss_pred EecCcCChHHHHHHHhc-CCC
Q psy6613 151 ITRVTADISLAKRSLMS-NPS 170 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~ 170 (510)
.||+|+||||+.+.|.. .|.
T Consensus 71 aGpSGSGKTTLAk~LaglLp~ 91 (656)
T PLN02318 71 AGPSGAGKTVFTEKVLNFMPS 91 (656)
T ss_pred ECCCCCcHHHHHHHHHhhCCC
Confidence 89999999999999988 553
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=88.72 E-value=0.32 Score=40.77 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+||||+.+.|..
T Consensus 8 ~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 8 VGPPGSGKTTLARALAR 24 (148)
T ss_pred ECCCCCcHHHHHHHHHh
Confidence 99999999999999987
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=88.72 E-value=0.29 Score=45.82 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.7
Q ss_pred CCeE-EecCcCChHHHHHHHhc
Q psy6613 147 GMII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+|++ +||+|+|||||++.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4666 99999999999999987
No 206
>PRK07429 phosphoribulokinase; Provisional
Probab=88.63 E-value=1.8 Score=45.46 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+||||+.+.|..
T Consensus 14 ~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 14 AGDSGCGKTTFLRGLAD 30 (327)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 89999999999999887
No 207
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=88.48 E-value=12 Score=35.84 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=72.4
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchhhhhhhc--------------ccHHHHHHHHHcCCeEEEEeccCC-c
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSSVLTEVQ--------------TEIERVYELASTLQLVVLDCDTIN-H 214 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~pFe~~I~--------------TslesI~~vi~sGKi~ILDID~qg-~ 214 (510)
.|.+|+||||+-..|.. .--.|.-.-.--++..-+.+-. +--+.+......|+++|+-|..-- .
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~ 80 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS 80 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence 38999999999999887 3323433322112221111100 233555666678998888886411 0
Q ss_pred hhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH--HHHHHHHhcCCCCccEEEe--CCCHHHHHHHHHH
Q psy6613 215 PSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM--VAAEKLAQCPQEMFDVILD--ENQLEDACEHIAE 289 (510)
Q Consensus 215 ~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL--~aa~eLEq~~~~~FD~VIv--NDdLd~A~~eL~~ 289 (510)
--.++|. ...-.+||+.. +++.+.+|++.|..--.. ..| .+=.-||.--+.. |.+.+ +..+++..++...
T Consensus 81 YRD~LR~~~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~---~~ll~SQfa~LE~P~~de-~vi~idi~~~~e~vv~~~~~ 155 (161)
T COG3265 81 YRDLLREANPGLRFVYLDG-DFDLILERMKARKGHFMP---ASLLDSQFATLEEPGADE-DVLTIDIDQPPEEVVAQALA 155 (161)
T ss_pred HHHHHhccCCCeEEEEecC-CHHHHHHHHHhcccCCCC---HHHHHHHHHHhcCCCCCC-CEEEeeCCCCHHHHHHHHHH
Confidence 1122333 23456677665 789999999888532211 122 1112344433334 55554 3447777766664
Q ss_pred HH
Q psy6613 290 YL 291 (510)
Q Consensus 290 il 291 (510)
.|
T Consensus 156 ~l 157 (161)
T COG3265 156 WL 157 (161)
T ss_pred HH
Confidence 33
No 208
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=88.12 E-value=0.38 Score=45.33 Aligned_cols=40 Identities=8% Similarity=0.007 Sum_probs=29.0
Q ss_pred CCCCCeE-EecCcCChHHHHHHHhc-CCC-------CceeeecCCCchh
Q psy6613 144 PSPGMII-ITRVTADISLAKRSLMS-NPS-------KRAIMERSNSRSS 183 (510)
Q Consensus 144 Ps~~RpI-~GPsGvGKsTL~~rLL~-~P~-------~F~~sVshTTR~p 183 (510)
|..+++. +|.+||||||+.+.|+. .-. --....|+|||.+
T Consensus 125 ~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~ 173 (190)
T cd01855 125 KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL 173 (190)
T ss_pred hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee
Confidence 5555665 99999999999999997 211 1233467899987
No 209
>KOG2996|consensus
Probab=88.11 E-value=0.26 Score=55.19 Aligned_cols=38 Identities=26% Similarity=0.495 Sum_probs=32.1
Q ss_pred cccccCCceEEEEeecC-CCceEEEEccCCCceeeecChh
Q psy6613 70 AVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 70 ~LsF~~GDiL~V~~~~d-~~WWqar~v~~~~~~GlIPS~~ 108 (510)
-|.|..|||++.+.-++ ..||+||..++ +.+|++||..
T Consensus 626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~s-r~sg~fpss~ 664 (865)
T KOG2996|consen 626 RLVLQEGDVLELLKGDAESSWWEGRNHGS-RESGNFPSST 664 (865)
T ss_pred ceEecCCceeehhcCCCCCcccccCCccC-CccCCCCccc
Confidence 58999999999998754 58999999865 5899999864
No 210
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=87.98 E-value=0.39 Score=42.13 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=22.2
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCch
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRS 182 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~ 182 (510)
+|++|+||||+.++|......+....+.||+.
T Consensus 7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~ 38 (157)
T cd04164 7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRD 38 (157)
T ss_pred ECCCCCCHHHHHHHHHCCceEeccCCCCCccc
Confidence 99999999999999987332233334455544
No 211
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.71 E-value=1.6 Score=44.04 Aligned_cols=19 Identities=0% Similarity=-0.046 Sum_probs=16.8
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||+|+|||+|.+.+..
T Consensus 34 ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 34 LLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999998887
No 212
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=87.65 E-value=4.4 Score=42.66 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=73.1
Q ss_pred CCCCCe--E--EecCcCChHHHHHHHhc-C-CCCceee---ecCCCchh----------hhhh-----hc----------
Q psy6613 144 PSPGMI--I--ITRVTADISLAKRSLMS-N-PSKRAIM---ERSNSRSS----------VLTE-----VQ---------- 189 (510)
Q Consensus 144 Ps~~Rp--I--~GPsGvGKsTL~~rLL~-~-P~~F~~s---VshTTR~p----------Fe~~-----I~---------- 189 (510)
|..|+. | -|++|+|||||...|.. . -.....+ |--++... |.+. ++
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 655554 3 69999999999999886 2 2233222 22222111 3221 11
Q ss_pred -----ccHHHHHHHHHcCCeEEEEeccCCchhHhhhc---CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy6613 190 -----TEIERVYELASTLQLVVLDCDTINHPSQLAKT---NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAE 261 (510)
Q Consensus 190 -----TslesI~~vi~sGKi~ILDID~qg~~lq~lks---~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa~ 261 (510)
...+.|.-+=..|..+|+-=.+ | +-+-.. ..--.++++..|.. | ++-.-+++-|
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETV-G--vGQsev~I~~~aDt~~~v~~pg~----------G-D~~Q~iK~Gi---- 187 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETV-G--VGQSEVDIANMADTFLVVMIPGA----------G-DDLQGIKAGI---- 187 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEec-C--CCcchhHHhhhcceEEEEecCCC----------C-cHHHHHHhhh----
Confidence 3445565555678887764333 3 222222 34456788888742 2 1111111111
Q ss_pred HHHhcCCCCccEEEeC-C---CHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy6613 262 KLAQCPQEMFDVILDE-N---QLEDACEHIAEYLEAYWRATHPPAAPPQ 306 (510)
Q Consensus 262 eLEq~~~~~FD~VIvN-D---dLd~A~~eL~~ileai~~a~h~p~~~p~ 306 (510)
|| .=|.+++| . +-+.|+.+|...+..+..-.+.+-|.|+
T Consensus 188 -mE-----iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 188 -ME-----IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred -hh-----hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 22 23777777 3 3555667777444433334677778877
No 213
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=87.55 E-value=0.48 Score=41.77 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=16.7
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|+|||+|.++|+.
T Consensus 4 i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 4 VLGAGGVGKSAITIQFVK 21 (160)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 399999999999999986
No 214
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=87.45 E-value=0.5 Score=41.96 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=24.9
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
+++ +|++|+||||+.++|+..........+.||+..
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~ 40 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS 40 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc
Confidence 344 999999999999999873322233345666654
No 215
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=87.44 E-value=0.63 Score=46.92 Aligned_cols=65 Identities=6% Similarity=0.023 Sum_probs=37.1
Q ss_pred CeEEecCcCChHHHHHHHhc-CCCCce-eeecCCCchh---------------hhhhhc----ccHHHHHHHHHcCCeE-
Q psy6613 148 MIIITRVTADISLAKRSLMS-NPSKRA-IMERSNSRSS---------------VLTEVQ----TEIERVYELASTLQLV- 205 (510)
Q Consensus 148 RpI~GPsGvGKsTL~~rLL~-~P~~F~-~sVshTTR~p---------------Fe~~I~----TslesI~~vi~sGKi~- 205 (510)
-++.||+|+|||||..-+-+ .-..|. ++-+...++. |-.+|| .--+.+.-.++.|++-
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idi 132 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDI 132 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEE
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEE
Confidence 34599999999999986666 333343 2223333433 334455 3345566788889884
Q ss_pred EEEeccC
Q psy6613 206 VLDCDTI 212 (510)
Q Consensus 206 ILDID~q 212 (510)
++...+.
T Consensus 133 iiG~g~~ 139 (233)
T PF05496_consen 133 IIGKGPN 139 (233)
T ss_dssp EBSSSSS
T ss_pred Eeccccc
Confidence 4444443
No 216
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=87.42 E-value=2.2 Score=43.62 Aligned_cols=134 Identities=12% Similarity=0.044 Sum_probs=63.5
Q ss_pred EecCcCChHHHHHHHhc-CCC-Ccee-eecC----CCchhh-----hhhhc-ccHHHHHHHHHcCCeEEEEeccCCchhH
Q psy6613 151 ITRVTADISLAKRSLMS-NPS-KRAI-MERS----NSRSSV-----LTEVQ-TEIERVYELASTLQLVVLDCDTINHPSQ 217 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~-~F~~-sVsh----TTR~pF-----e~~I~-TslesI~~vi~sGKi~ILDID~qg~~lq 217 (510)
+|-+|+||||+.+.|.. ..+ .... .|+. ..|..+ |..+. .-+..|.+.+.++.+||+|-.-- .+
T Consensus 7 ~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nY---iK 83 (270)
T PF08433_consen 7 CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNY---IK 83 (270)
T ss_dssp E--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S------SH
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCch---HH
Confidence 99999999999999887 322 1221 1220 112211 12222 45677888888999998886431 23
Q ss_pred hhhc---------CCCceEEEEeCCCHHHHHHHHHhcCCC--cHHHHHHHHHHHHHH-Hhc-CCCCccEEEeCCCHHHHH
Q psy6613 218 LAKT---------NLSPCIVYLKISSPKVLQRLIKSRGKS--QTRHLNVQMVAAEKL-AQC-PQEMFDVILDENQLEDAC 284 (510)
Q Consensus 218 ~lks---------~l~PivIFIkPPS~e~L~~rLr~Rgt~--~~e~i~kRL~aa~eL-Eq~-~~~~FD~VIvNDdLd~A~ 284 (510)
-.|. ...=.+||+..| .+.-..+-..|+.. -.++...+|...-|. ... -++..-++|.+++-+..+
T Consensus 84 g~RYelyclAr~~~~~~c~i~~~~~-~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~~~~~~~~ 162 (270)
T PF08433_consen 84 GMRYELYCLARAYGTTFCVIYCDCP-LETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDSSDEELPL 162 (270)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-TTS---H
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCC-HHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEecCCCCCCH
Confidence 2232 222356888887 67777777777755 456666666322221 111 123345666655555555
Q ss_pred HHHH
Q psy6613 285 EHIA 288 (510)
Q Consensus 285 ~eL~ 288 (510)
+++.
T Consensus 163 ~~I~ 166 (270)
T PF08433_consen 163 EEIW 166 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 217
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=87.42 E-value=9.1 Score=37.00 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=18.2
Q ss_pred EecCcCChHHHHHHHhc-CCC
Q psy6613 151 ITRVTADISLAKRSLMS-NPS 170 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~ 170 (510)
++..|+||||+...|.+ +|+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~ 25 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE 25 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC
Confidence 89999999999999998 774
No 218
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.26 E-value=7.6 Score=36.81 Aligned_cols=97 Identities=8% Similarity=-0.007 Sum_probs=55.2
Q ss_pred EecCcCChHHHHHHHhc-CCCCcee-eecCC--Cchh--------hhhh-h-----cccHHHHHHHHHcCCeEEEEeccC
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAI-MERSN--SRSS--------VLTE-V-----QTEIERVYELASTLQLVVLDCDTI 212 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~-sVshT--TR~p--------Fe~~-I-----~TslesI~~vi~sGKi~ILDID~q 212 (510)
+||+|+||||+.+.|+. .|..... .+-.. ...+ +... . .+-.+.++..++.+-..|+--+..
T Consensus 31 ~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~igEir 110 (186)
T cd01130 31 SGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIVGEVR 110 (186)
T ss_pred ECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEEEccC
Confidence 99999999999999887 4332222 22110 0000 0000 0 134456666777777777766655
Q ss_pred Cch-hHhhhc--CCCc-eEEEEeCCCHHHHHHHHHhcCC
Q psy6613 213 NHP-SQLAKT--NLSP-CIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 213 g~~-lq~lks--~l~P-ivIFIkPPS~e~L~~rLr~Rgt 247 (510)
+.. ...++. .-++ .+-.|...|....-.|+.....
T Consensus 111 ~~ea~~~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~ 149 (186)
T cd01130 111 GGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPS 149 (186)
T ss_pred cHHHHHHHHHHhcCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 411 222333 2355 6777888888777777766543
No 219
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=87.21 E-value=0.47 Score=42.17 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999997
No 220
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=87.17 E-value=0.51 Score=42.91 Aligned_cols=21 Identities=0% Similarity=-0.078 Sum_probs=18.5
Q ss_pred CCeE-EecCcCChHHHHHHHhc
Q psy6613 147 GMII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~ 167 (510)
.+++ +|++|||||+|..+++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3555 99999999999999997
No 221
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.79 E-value=0.99 Score=48.56 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=79.5
Q ss_pred EEEEe-eccCCCCCC-CCC-CCCccccccCCceEEEEee-cCCCceEEEEccCCCceeeecChhHHHHHHHHhhhccCCC
Q psy6613 49 AVRTN-VKYDGSIDD-DSP-VHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPK 124 (510)
Q Consensus 49 ~VRAl-fdY~~~~D~-~iP-c~e~~LsF~~GDiL~V~~~-~d~~WWqar~v~~~~~~GlIPS~~~~Errr~~~~~kk~~~ 124 (510)
|+|.. ++|.+..|+ .+| .+=.-..++.||.+.-... ...+-|.+|.++-.| --|-... .+..... ...
T Consensus 32 flr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r~~~~~~~LgrV~~~~G---~p~d~~~--~~~~~~~---~~p 103 (380)
T PRK12608 32 FLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVARPRERYRVLVRVDSVNG---TDPEKLA--RRPHFDD---LTP 103 (380)
T ss_pred EeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccCCCCChhheEEEeccCC---cCchhcc--cccCcCc---CCC
Confidence 58886 889888765 222 1222456889998888665 445679999875433 1221110 0000000 000
Q ss_pred cccccC--CC--CCCCCCCCCC--CC-CCC-Ce-EEecCcCChHHHHHHHhc-----CCCC--ceeeecCCCchh--hhh
Q psy6613 125 LYSSKT--SS--TSNLGALSSD--AP-SPG-MI-IITRVTADISLAKRSLMS-----NPSK--RAIMERSNSRSS--VLT 186 (510)
Q Consensus 125 l~~sk~--~s--~~~~~~~~~d--~P-s~~-Rp-I~GPsGvGKsTL~~rLL~-----~P~~--F~~sVshTTR~p--Fe~ 186 (510)
.+-... .. ..+.+.-.-| .| ++| |. |+||+|+|||||++.|++ +|+. +...|....+.. |.+
T Consensus 104 i~p~~R~~ie~~~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~ 183 (380)
T PRK12608 104 LHPRERLRLETGSDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRR 183 (380)
T ss_pred CCccccccccccCcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHH
Confidence 000000 00 0000000001 14 222 54 499999999999998765 3343 233355445544 332
Q ss_pred hhc--------------------ccHHHHHHHHHcCCeEEEEeccCC
Q psy6613 187 EVQ--------------------TEIERVYELASTLQLVVLDCDTIN 213 (510)
Q Consensus 187 ~I~--------------------TslesI~~vi~sGKi~ILDID~qg 213 (510)
.+. +-.+..+...++|++|||=+|--.
T Consensus 184 ~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 184 SVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 221 223444556678999999998754
No 222
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=86.69 E-value=0.39 Score=43.30 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=22.3
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p 183 (510)
+|++|||||||.++|.. .. +....+.||+.+
T Consensus 2 iG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~ 33 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKP--KVANYPFTTLEP 33 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCc--cccCCCceeecC
Confidence 69999999999999987 32 222235566655
No 223
>PRK00089 era GTPase Era; Reviewed
Probab=86.54 E-value=0.45 Score=48.03 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=24.2
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
+|++|||||||.+.|+...-......++|||..
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~ 43 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR 43 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecCCCCCccccc
Confidence 999999999999999973212233456777764
No 224
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.47 E-value=0.5 Score=48.04 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=17.0
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|-.| +||||||||||.+-+--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 4444 99999999999986655
No 225
>KOG1191|consensus
Probab=86.31 E-value=1 Score=49.95 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=44.6
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCchhhhhhhc------------------------ccHHHHHHHHHcCCeEE
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQ------------------------TEIERVYELASTLQLVV 206 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~pFe~~I~------------------------TslesI~~vi~sGKi~I 206 (510)
+||+.||||+|.+.|.+.+-....++|-|||..-+..|. -.++.-++.+..-.+|+
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~ 353 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL 353 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence 999999999999999886556777899999987333221 23444455666777777
Q ss_pred EEecc
Q psy6613 207 LDCDT 211 (510)
Q Consensus 207 LDID~ 211 (510)
|-+|+
T Consensus 354 ~vvda 358 (531)
T KOG1191|consen 354 LVVDA 358 (531)
T ss_pred EEecc
Confidence 77776
No 226
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=86.17 E-value=0.7 Score=42.26 Aligned_cols=36 Identities=14% Similarity=-0.078 Sum_probs=26.6
Q ss_pred CCeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613 147 GMII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS 183 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p 183 (510)
.++. +|.+|+||||+.+.|+. .... .-..+||||..
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~ 138 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQ 138 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccce
Confidence 4554 99999999999999997 3211 22357899876
No 227
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=86.05 E-value=16 Score=40.90 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.||+|+||||+.+.|.+
T Consensus 290 ~G~sgsGKst~a~~la~ 306 (512)
T PRK13477 290 DGPAGAGKSTVTRAVAK 306 (512)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 79999999999998875
No 228
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=85.78 E-value=0.53 Score=41.60 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=17.9
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 455 99999999999999997
No 229
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=85.58 E-value=2 Score=46.65 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=15.3
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
|+-||+|+|||||.+-|-.
T Consensus 52 Il~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 52 ILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4489999999999875554
No 230
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=85.54 E-value=0.62 Score=44.13 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=18.1
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|+.|||||||+.+|..
T Consensus 7 kivv~G~~g~GKTtl~~~l~~ 27 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVG 27 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 455 99999999999999998
No 231
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.54 E-value=0.66 Score=37.59 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=16.1
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|+||+|+|||||.+.+.-
T Consensus 27 li~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 27 LITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999997654
No 232
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=85.09 E-value=0.68 Score=42.35 Aligned_cols=20 Identities=0% Similarity=-0.112 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.+++..
T Consensus 6 ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 444 99999999999999987
No 233
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=84.96 E-value=8.9 Score=37.32 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=72.7
Q ss_pred CCCCCeE--EecCcCChHHHHHHHhc-CCCCceeeecC-CCchh-hh------hhhc--------ccHHHHH-HHHHcCC
Q psy6613 144 PSPGMII--ITRVTADISLAKRSLMS-NPSKRAIMERS-NSRSS-VL------TEVQ--------TEIERVY-ELASTLQ 203 (510)
Q Consensus 144 Ps~~RpI--~GPsGvGKsTL~~rLL~-~P~~F~~sVsh-TTR~p-Fe------~~I~--------TslesI~-~vi~sGK 203 (510)
|++-++| +||-.+|||||.++|-+ +.. .... --|.- |+ ++.. --...+. .+-...+
T Consensus 5 p~F~K~VailG~ESsGKStLv~kLA~~fnt----~~~wEY~Re~v~~~l~gdeal~y~Dy~~ia~Gq~~~~d~av~~a~~ 80 (187)
T COG3172 5 PFFVKTVAILGGESSGKSTLVNKLANIFNT----TSAWEYGREYVFEHLGGDEALQYSDYAKIALGQAAYEDAAVRYANK 80 (187)
T ss_pred hhhheeeeeecCcccChHHHHHHHHHHhCC----CchhHHHHHHHHHHhCCchhhhhccHHHHHhhhHHHHHHHHhCCCc
Confidence 6666766 89999999999999987 321 0000 00111 11 1111 1222222 2345689
Q ss_pred eEEEEeccCCchhHhhhc-C-CCc----------e-EEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHhcCCC
Q psy6613 204 LVVLDCDTINHPSQLAKT-N-LSP----------C-IVYLKISSPKVLQRLIKSRGKSQTRHLNVQM-VAAEKLAQCPQE 269 (510)
Q Consensus 204 i~ILDID~qg~~lq~lks-~-l~P----------i-vIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL-~aa~eLEq~~~~ 269 (510)
++++|.|+..+.+=.... . .+| + ++.+.+|+.+=.-.=++..|. ....+.. +..+++-.. +
T Consensus 81 v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~---~~~R~~F~~~l~~~L~~--~ 155 (187)
T COG3172 81 VAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGS---SVQRQEFQNLLEQMLEE--N 155 (187)
T ss_pred eEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEcCCCCceeCCCcccccc---HhHHHHHHHHHHHHHHH--h
Confidence 999999986622222221 1 233 1 244445543222222222221 1222233 222222222 2
Q ss_pred CccEEEeCC-CHHHHHHHHHHHHHHHHHh
Q psy6613 270 MFDVILDEN-QLEDACEHIAEYLEAYWRA 297 (510)
Q Consensus 270 ~FD~VIvND-dLd~A~~eL~~ileai~~a 297 (510)
.--+|++.+ +.++=+.+..+.++.+...
T Consensus 156 ~~~~v~i~~~~y~eR~~~~~~aV~ell~~ 184 (187)
T COG3172 156 NIPFVVIEGEDYLERYLQAVEAVEELLGE 184 (187)
T ss_pred CCcEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 556777777 8888888888777777654
No 234
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=84.95 E-value=0.72 Score=41.81 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=18.2
Q ss_pred CCeE-EecCcCChHHHHHHHhc
Q psy6613 147 GMII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~ 167 (510)
.+++ +||+|||||||.++|..
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhc
Confidence 3555 99999999999999987
No 235
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=84.83 E-value=0.77 Score=46.96 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|||||||.+.|+.
T Consensus 167 ~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 167 VGQSGVGKSTLINALLP 183 (287)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999987
No 236
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=84.74 E-value=1.1 Score=44.39 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCeE--EecCcCChHHHHHHHhc--CCCCceee---ecCCCchh
Q psy6613 147 GMII--ITRVTADISLAKRSLMS--NPSKRAIM---ERSNSRSS 183 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~--~P~~F~~s---VshTTR~p 183 (510)
+.++ +||||+|||||.+-+-- .|..=.+. +.||..+|
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P 68 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP 68 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc
Confidence 4555 99999999999985443 45432222 57888888
No 237
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.63 E-value=0.94 Score=40.25 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=22.5
Q ss_pred EEecCcCChHHHHHHHhc-CCC-CceeeecCCCch
Q psy6613 150 IITRVTADISLAKRSLMS-NPS-KRAIMERSNSRS 182 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~-~F~~sVshTTR~ 182 (510)
+.||+|+|||+|.+.|.. ... .+.+.++..|..
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~ 38 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPVIRINCSSDTTE 38 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTH
T ss_pred EECCCCCCHHHHHHHHHHHhhcceEEEEecccccc
Confidence 489999999999999887 432 344455554443
No 238
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=84.58 E-value=0.67 Score=49.10 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=15.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|||||||||+.+.+.-
T Consensus 35 lGPSGcGKSTlLr~IAG 51 (338)
T COG3839 35 LGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999987765
No 239
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=84.54 E-value=0.66 Score=41.59 Aligned_cols=20 Identities=5% Similarity=0.022 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 444 99999999999999987
No 240
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=84.48 E-value=0.73 Score=46.65 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=23.8
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCCCceeeec
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPSKRAIMER 177 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVs 177 (510)
|++ +|++|+|||+++..|+. .+..|...+-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l 46 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFL 46 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEE
Confidence 554 99999999999999998 6667754443
No 241
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=84.44 E-value=0.87 Score=40.96 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=22.4
Q ss_pred EEecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613 150 IITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p 183 (510)
|+|++|||||||.++|.. .+. ....++||+.+
T Consensus 5 ivG~~~~GKStl~~~l~~~~~~--v~~~~~~t~~~ 37 (170)
T cd01898 5 LVGLPNAGKSTLLSAISNAKPK--IADYPFTTLVP 37 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCcc--ccCCCccccCC
Confidence 399999999999999986 331 11234566655
No 242
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=84.40 E-value=0.6 Score=41.02 Aligned_cols=34 Identities=15% Similarity=0.032 Sum_probs=24.2
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
++|.+|||||||.++|......+....+.||+..
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~ 35 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDR 35 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCc
Confidence 4799999999999999972223334456667654
No 243
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.36 E-value=2.8 Score=38.80 Aligned_cols=33 Identities=6% Similarity=0.096 Sum_probs=21.8
Q ss_pred EecCcCChHHHHHHHhc---CCCCceeeecCCCchh
Q psy6613 151 ITRVTADISLAKRSLMS---NPSKRAIMERSNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~---~P~~F~~sVshTTR~p 183 (510)
+||.|+||||+...|.. ....-...+.+-++.+
T Consensus 6 ~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 6 VGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 89999999999888775 1222233455555543
No 244
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.34 E-value=0.51 Score=45.59 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=86.6
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecC---CCchh---hhhhhc---ccHHHHHHHHHcCCeEEEEeccCCc-hhHhh
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERS---NSRSS---VLTEVQ---TEIERVYELASTLQLVVLDCDTINH-PSQLA 219 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVsh---TTR~p---Fe~~I~---TslesI~~vi~sGKi~ILDID~qg~-~lq~l 219 (510)
-||.|+||||+..-++. .-+.+.+.=+. .-+.| -...++ .-+..+...++.|+...++.-..|. .++.+
T Consensus 8 aG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~~s~~~~i 87 (187)
T COG4185 8 AGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSGPSILELI 87 (187)
T ss_pred ecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeeccchHHHHH
Confidence 79999999998765443 22133333211 00111 011222 4566778889999999999887661 12334
Q ss_pred hc----CCCceEEEEeCCCHHHHHHHHHhc----CCCc-HHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHH
Q psy6613 220 KT----NLSPCIVYLKISSPKVLQRLIKSR----GKSQ-TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEY 290 (510)
Q Consensus 220 ks----~l~PivIFIkPPS~e~L~~rLr~R----gt~~-~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~i 290 (510)
++ .|.-+..||--+|.+.-.+|.+.| |-+- ++.+..|-..+-++-..+=++.|-..+-||-+.+-.-+.+|
T Consensus 88 k~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~~~l~l~dr~~IydNS~~~~~lv~e~ 167 (187)
T COG4185 88 KTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLAQALTLADRATIYDNSRLAPRLVAEF 167 (187)
T ss_pred HHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHhhcceeEEecCCCCCceEEEEe
Confidence 43 567777888888876666665544 4333 45555566334333322336778777766655442222211
Q ss_pred H-HHHHHhcCCCCCCCCC
Q psy6613 291 L-EAYWRATHPPAAPPQP 307 (510)
Q Consensus 291 l-eai~~a~h~p~~~p~~ 307 (510)
= ..+|.-+.-|-|.|++
T Consensus 168 ~~~~i~~~~~~~~w~~~~ 185 (187)
T COG4185 168 SGGGIIGRACWPSWTPPP 185 (187)
T ss_pred CCceEEEEeecccccccC
Confidence 1 1334444555666554
No 245
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.31 E-value=0.74 Score=46.40 Aligned_cols=17 Identities=24% Similarity=0.073 Sum_probs=14.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||||+||||+.+-|-.
T Consensus 34 iGpSGSGKSTlLRclN~ 50 (240)
T COG1126 34 IGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ECCCCCCHHHHHHHHHC
Confidence 99999999999986543
No 246
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=84.24 E-value=0.7 Score=41.39 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|||||||.++|+.
T Consensus 5 v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 5 IIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 399999999999999987
No 247
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=84.23 E-value=1.9 Score=40.98 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|+|||++...|..
T Consensus 7 ~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 7 TGGARSGKSRFAERLAA 23 (170)
T ss_pred ECCCCccHHHHHHHHHH
Confidence 99999999999999987
No 248
>PRK06761 hypothetical protein; Provisional
Probab=83.98 E-value=4.2 Score=42.10 Aligned_cols=95 Identities=9% Similarity=-0.090 Sum_probs=49.8
Q ss_pred EecCcCChHHHHHHHhcCCCCceeeecCCCc-----hh------------hhhhhc----ccHHHHHHHHHcCCeEEEEe
Q psy6613 151 ITRVTADISLAKRSLMSNPSKRAIMERSNSR-----SS------------VLTEVQ----TEIERVYELASTLQLVVLDC 209 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR-----~p------------Fe~~I~----TslesI~~vi~sGKi~ILDI 209 (510)
.||+|+||||+.+.|.+.-...++.+.+++. +. |...+. -...-+++.+..|..+|+-.
T Consensus 9 ~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~~~i~~~ 88 (282)
T PRK06761 9 EGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGDYYLLPY 88 (282)
T ss_pred ECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCCeEEEEe
Confidence 8999999999999998822222223322211 11 111111 12334455667787766665
Q ss_pred ccCCch-hHhhhc-CCCc-eEEEEeCCCHHHHHHHHHhc
Q psy6613 210 DTINHP-SQLAKT-NLSP-CIVYLKISSPKVLQRLIKSR 245 (510)
Q Consensus 210 D~qg~~-lq~lks-~l~P-ivIFIkPPS~e~L~~rLr~R 245 (510)
..--.+ -..++. .+.+ .+-|+-..+.+.+++|+..|
T Consensus 89 ~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R~~~r 127 (282)
T PRK06761 89 RKIKNEFGDQFSDELFNDISKNDIYELPFDKNTELITDR 127 (282)
T ss_pred hhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHHHHHH
Confidence 331100 011222 1222 35555577888888887654
No 249
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=83.84 E-value=0.76 Score=40.89 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
|++ +|++|+|||||.++|+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999987
No 250
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=83.84 E-value=0.79 Score=43.65 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=27.9
Q ss_pred CceEEEEeCCCHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHh----cCCCCccEEEeCCC
Q psy6613 224 SPCIVYLKISSPKVLQRLIKS----RGKSQTRHLNVQMVAAEKLAQ----CPQEMFDVILDENQ 279 (510)
Q Consensus 224 ~PivIFIkPPS~e~L~~rLr~----Rgt~~~e~i~kRL~aa~eLEq----~~~~~FD~VIvNDd 279 (510)
.-+.|||.++.--.|.+|+.. ||.+. ++...++......+. -+...-|+||.+-.
T Consensus 127 ~D~~ifld~~~~~~l~Rri~RD~~~rG~~~-~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 127 FDLKIFLDADEDLRLERRIQRDVAERGRSP-EEVIAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp -SEEEEEEE-HHHHHHHHHHHHHHHS-S-H-HHHHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred ceeEEEecccHHHHHHHHhhhhccccCCcc-eeEEEEeecCChhhhhheeccccccEEEECCCC
Confidence 347899998876667777643 66654 344444421111111 12357799987643
No 251
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=83.83 E-value=0.8 Score=39.88 Aligned_cols=18 Identities=0% Similarity=-0.001 Sum_probs=16.6
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|||||+|.++|..
T Consensus 4 i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 4 LVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEcCCCCCHHHHHHHHcc
Confidence 489999999999999987
No 252
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=83.70 E-value=4.4 Score=40.32 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=15.4
Q ss_pred HcC-CeEEEEeccCCchhHhhh
Q psy6613 200 STL-QLVVLDCDTINHPSQLAK 220 (510)
Q Consensus 200 ~sG-Ki~ILDID~qg~~lq~lk 220 (510)
+.| +++|+|+|+|++......
T Consensus 28 ~~G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 28 SDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred hCCCcEEEEeCCCCCCHHHHHH
Confidence 456 788999999996555443
No 253
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=83.68 E-value=0.72 Score=41.86 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++++.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 444 99999999999999987
No 254
>KOG3523|consensus
Probab=83.67 E-value=0.43 Score=53.64 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=44.9
Q ss_pred EEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHHHH
Q psy6613 51 RTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENL 113 (510)
Q Consensus 51 RAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~Err 113 (510)
-|.-.|.+...+ +|++..|||+-|+.+..++|..|.+.+ +|..|+||+..-.|-.
T Consensus 612 ~~~~sy~a~q~D-------el~Le~~Dvv~v~~k~~DGWl~GeRl~-Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 612 QCVHSYKAKQPD-------ELTLELADVVNVLQKTPDGWLEGERLR-DGERGWFPSSYVEEIT 666 (695)
T ss_pred heeeccccCCCc-------eeeeehhhhhhhhhcCCCccccccccc-cCccCcchHHHHHHhc
Confidence 344447776654 699999999999999999999999876 4799999998887743
No 255
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=83.66 E-value=0.89 Score=48.43 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=17.3
Q ss_pred EEecCcCChHHHHHHHhc--CCC
Q psy6613 150 IITRVTADISLAKRSLMS--NPS 170 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~--~P~ 170 (510)
++|||||||||+.+.+-- .|+
T Consensus 36 lLGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 36 LLGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred EECCCCCCHHHHHHHHhCCCCCC
Confidence 399999999999987765 454
No 256
>PRK12678 transcription termination factor Rho; Provisional
Probab=83.57 E-value=2 Score=48.83 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=46.3
Q ss_pred eEEecCcCChHHHHHHHhc-----CCCCceeeecCCCchh----hhhhhc--------------------ccHHHHHHHH
Q psy6613 149 IIITRVTADISLAKRSLMS-----NPSKRAIMERSNSRSS----VLTEVQ--------------------TEIERVYELA 199 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~-----~P~~F~~sVshTTR~p----Fe~~I~--------------------TslesI~~vi 199 (510)
+|+||+|+|||||.+.|.+ +|+...+.+----|+. |..-|. +-++.-+...
T Consensus 420 LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fr 499 (672)
T PRK12678 420 LIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLV 499 (672)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999998776 6765544444444544 332221 3444455667
Q ss_pred HcCCeEEEEeccCCchhHhhh
Q psy6613 200 STLQLVVLDCDTINHPSQLAK 220 (510)
Q Consensus 200 ~sGKi~ILDID~qg~~lq~lk 220 (510)
+.|++|||=+|-....++..+
T Consensus 500 e~G~dVlillDSlTR~ArAyr 520 (672)
T PRK12678 500 ELGKDVVVLLDSITRLGRAYN 520 (672)
T ss_pred HcCCCEEEEEeCchHHHHHHH
Confidence 899999999997653333333
No 257
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.56 E-value=3.4 Score=45.90 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=16.6
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||||+.+.|.+
T Consensus 44 Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 44 IFFGPRGVGKTTIARILAK 62 (484)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4499999999999988876
No 258
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=83.33 E-value=0.82 Score=41.12 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+||||+.++|+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~ 22 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVN 22 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999987
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=83.31 E-value=2.9 Score=49.27 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.0
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||.|+||+|+.+-|.+
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 41 LFSGPRGCGKTSSARILAR 59 (824)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4599999999999887655
No 260
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=83.24 E-value=0.83 Score=40.23 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~ 22 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG 22 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 455 99999999999999987
No 261
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=83.20 E-value=0.93 Score=43.32 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=14.7
Q ss_pred EecCcCChHHHHHHHh
Q psy6613 151 ITRVTADISLAKRSLM 166 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL 166 (510)
+||+|+|||||.+.++
T Consensus 27 ~G~nG~GKSTLl~~il 42 (176)
T cd03238 27 TGVSGSGKSTLVNEGL 42 (176)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 9999999999998765
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.18 E-value=0.88 Score=45.18 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=17.4
Q ss_pred EecCcCChHHHHHHHhc--CCC
Q psy6613 151 ITRVTADISLAKRSLMS--NPS 170 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~--~P~ 170 (510)
+||||+||||+.+.|+. .|.
T Consensus 34 ~GpSGAGKSTllkLi~~~e~pt 55 (223)
T COG2884 34 TGPSGAGKSTLLKLIYGEERPT 55 (223)
T ss_pred ECCCCCCHHHHHHHHHhhhcCC
Confidence 99999999999998876 554
No 263
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=83.17 E-value=1.7 Score=37.82 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=29.9
Q ss_pred ccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 69 YAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 69 ~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
..|..++|.+|+|++..+.+=|..|+ +.|+.|+||...+.+
T Consensus 31 kDLpi~~GE~LeVI~~t~~~kvlCRN--~~GKYGYV~~~~L~~ 71 (89)
T PF14603_consen 31 KDLPIKPGEILEVIQFTDDNKVLCRN--SEGKYGYVLRSHLLP 71 (89)
T ss_dssp TB----TT-B-EEEEESSSSEEEEEE--TTTEEEEEEGGGS--
T ss_pred ccCCcCCCCEEEEEEeCCCCeEEEeC--CCCceeEEEHHHccC
Confidence 46889999999999999999999998 468999999988855
No 264
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=83.13 E-value=1 Score=40.25 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|+.|||||+|.++|..
T Consensus 4 vvG~~~vGKtsl~~~~~~ 21 (162)
T PF00071_consen 4 VVGDSGVGKTSLINRLIN 21 (162)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 399999999999999997
No 265
>PRK04195 replication factor C large subunit; Provisional
Probab=83.08 E-value=21 Score=39.22 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=17.0
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||+|+||||+.+.|.+
T Consensus 43 LL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 43 LLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999999887
No 266
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.93 E-value=1.1 Score=39.46 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 16 i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEESTTSSHHHHHHHHTT
T ss_pred EEccCCCccccceeeecc
Confidence 399999999999998877
No 267
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.93 E-value=0.99 Score=44.26 Aligned_cols=24 Identities=13% Similarity=-0.049 Sum_probs=19.5
Q ss_pred CCCCCeEEecCcCChHHHHHHHhc
Q psy6613 144 PSPGMIIITRVTADISLAKRSLMS 167 (510)
Q Consensus 144 Ps~~RpI~GPsGvGKsTL~~rLL~ 167 (510)
|+....|.||||+||||+.+.+..
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 444455699999999999998876
No 268
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=82.87 E-value=1 Score=41.23 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=16.2
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|||||+|.++++.
T Consensus 8 vG~~~vGKTsli~~~~~ 24 (170)
T cd04115 8 IGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999999986
No 269
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=82.86 E-value=0.86 Score=40.70 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+|||++.++|+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVK 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 344 99999999999999998
No 270
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=82.84 E-value=0.9 Score=39.42 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
|++ +|++|+||||+.++|..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999987
No 271
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=82.83 E-value=0.99 Score=40.21 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|+.|||||+|..+++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 444 99999999999999987
No 272
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=82.70 E-value=0.92 Score=40.48 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=15.0
Q ss_pred EEecCcCChHHHHHHHh
Q psy6613 150 IITRVTADISLAKRSLM 166 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL 166 (510)
|+||||+|||||.+.|+
T Consensus 20 I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 20 ITGDSGIGKTELALELI 36 (107)
T ss_pred EEcCCCCCHHHHHHHhh
Confidence 39999999999998775
No 273
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=82.69 E-value=1.1 Score=40.09 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=16.9
Q ss_pred eE-EecCcCChHHHHHHHhc
Q psy6613 149 II-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~ 167 (510)
++ +|++|||||+|..+|..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 44 99999999999999985
No 274
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=82.67 E-value=1.1 Score=41.48 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=18.5
Q ss_pred CCeE-EecCcCChHHHHHHHhc
Q psy6613 147 GMII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~ 167 (510)
.+++ +||+|||||||.++|..
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4555 99999999999999987
No 275
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=82.66 E-value=0.88 Score=40.88 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|+.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999997
No 276
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=82.64 E-value=1.1 Score=39.41 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|+|||||.+.|..
T Consensus 4 l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 4 FAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEcCCCCCHHHHHHHHhc
Confidence 389999999999999993
No 277
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=82.59 E-value=0.91 Score=40.07 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|+||||+.++|+.
T Consensus 5 i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 5 LLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 399999999999999997
No 278
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=82.52 E-value=1.1 Score=40.25 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~ 22 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR 22 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc
Confidence 344 99999999999999998
No 279
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=82.49 E-value=2.6 Score=48.38 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=16.3
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||.|+||+|+.+.|.+
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 42 LFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999987766
No 280
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.48 E-value=1 Score=39.13 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=15.2
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.||+|+|||++++++..
T Consensus 10 ~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 10 SGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp EE-TTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 99999999999999887
No 281
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.47 E-value=4.9 Score=42.44 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=16.6
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||||+.+.+.+
T Consensus 42 L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 42 LLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 3499999999999998876
No 282
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=82.35 E-value=1.2 Score=39.64 Aligned_cols=18 Identities=17% Similarity=-0.071 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|+|||+|.++|+.
T Consensus 4 iiG~~~~GKssli~~~~~ 21 (158)
T cd00878 4 ILGLDGAGKTTILYKLKL 21 (158)
T ss_pred EEcCCCCCHHHHHHHHhc
Confidence 399999999999999998
No 283
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=82.26 E-value=0.94 Score=40.17 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999986
No 284
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.11 E-value=0.96 Score=45.67 Aligned_cols=17 Identities=24% Similarity=0.049 Sum_probs=14.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||||+||||+.+-|=.
T Consensus 39 IGPSGcGKST~LR~lNR 55 (253)
T COG1117 39 IGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ECCCCcCHHHHHHHHHh
Confidence 99999999999886544
No 285
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=81.99 E-value=0.84 Score=44.97 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+||||+.+.|..
T Consensus 5 ~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 5 AGSVAVGKSTTARVLQA 21 (220)
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 89999999999998876
No 286
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=81.97 E-value=1.1 Score=40.48 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.5
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+|||||.++|+.
T Consensus 5 kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 344 99999999999999986
No 287
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=81.94 E-value=1.2 Score=42.30 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=17.3
Q ss_pred eE-EecCcCChHHHHHHHhc
Q psy6613 149 II-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~ 167 (510)
++ +|++|||||+|.++|+.
T Consensus 3 ivivG~~~vGKTsli~~l~~ 22 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVH 22 (201)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 44 99999999999999997
No 288
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=81.72 E-value=1.4 Score=37.18 Aligned_cols=27 Identities=19% Similarity=0.700 Sum_probs=22.7
Q ss_pred cccccCCceEEEEeec------CCCceEEEEcc
Q psy6613 70 AVSFDIHEFLHIKEKY------DSNWWIGRLVK 96 (510)
Q Consensus 70 ~LsF~~GDiL~V~~~~------d~~WWqar~v~ 96 (510)
-|+++.||.+-|.+.. +.+||+|..+.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~ 35 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQVIH 35 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEEEE
Confidence 5889999999888764 67999999864
No 289
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=81.72 E-value=1 Score=40.12 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 344 99999999999999987
No 290
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=81.69 E-value=6.2 Score=40.53 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|+|||||+.+|+.
T Consensus 7 ~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 7 VGYKATGKTTLVERLVD 23 (274)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999875
No 291
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=81.62 E-value=1.1 Score=40.51 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|||||+|..+++.
T Consensus 4 vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 4 VLGASGVGKSALVVRFLT 21 (165)
T ss_pred EECCCCCcHHHHHHHHHh
Confidence 399999999999999886
No 292
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=81.35 E-value=1.1 Score=44.90 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=16.4
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|-.+ +||||+|||||.+-|=.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 4444 99999999999986543
No 293
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=81.24 E-value=1.2 Score=40.77 Aligned_cols=20 Identities=0% Similarity=0.027 Sum_probs=17.5
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999986
No 294
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=81.21 E-value=13 Score=37.36 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=53.5
Q ss_pred HHHHHcCCeEEEEeccCCchhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC----CcHHHHHHHHHHHHH--HHhcCC-
Q psy6613 196 YELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK----SQTRHLNVQMVAAEK--LAQCPQ- 268 (510)
Q Consensus 196 ~~vi~sGKi~ILDID~qg~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt----~~~e~i~kRL~aa~e--LEq~~~- 268 (510)
+.+++.+..||+|--=.| -.++ .=.++=||+.....+.-++|++.... ..-+++...|.+-++ ..+..+
T Consensus 114 r~~a~~~~~~V~dGRDiG--TvV~--PdA~lKiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~P 189 (222)
T COG0283 114 RAFAKNGPGIVADGRDIG--TVVF--PDAELKIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAP 189 (222)
T ss_pred HHHHhcCCCEEEecCCCc--ceEC--CCCCeEEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCC
Confidence 344555677899875555 1111 11367799999877777777765432 223666666633322 222222
Q ss_pred --CCccEEEe-CC--CHHHHHHHHHHHHH
Q psy6613 269 --EMFDVILD-EN--QLEDACEHIAEYLE 292 (510)
Q Consensus 269 --~~FD~VIv-ND--dLd~A~~eL~~ile 292 (510)
.--|.+++ ++ .++++++++..+++
T Consensus 190 Lk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 190 LKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred CcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 22477775 33 37888888876665
No 295
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=81.15 E-value=1.2 Score=39.99 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=16.5
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|+|||||.++|..
T Consensus 4 ~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 4 ILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEecCCCCHHHHHHHHhh
Confidence 399999999999999876
No 296
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=81.14 E-value=1.4 Score=41.51 Aligned_cols=17 Identities=18% Similarity=-0.083 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 24 ~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNG 40 (190)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 297
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.12 E-value=1.2 Score=42.52 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+-|..
T Consensus 33 ~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 33 VGPNGSGKSTLLRLLNG 49 (211)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999998876
No 298
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=81.08 E-value=1.3 Score=41.68 Aligned_cols=20 Identities=0% Similarity=-0.021 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|..+++.
T Consensus 2 kivivG~~~vGKTsli~~~~~ 22 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTR 22 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 455 99999999999999987
No 299
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=81.08 E-value=1.2 Score=39.72 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=17.2
Q ss_pred eE-EecCcCChHHHHHHHhc
Q psy6613 149 II-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~ 167 (510)
++ +|++|||||+|.+++..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 44 99999999999999987
No 300
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=81.05 E-value=2.1 Score=46.22 Aligned_cols=22 Identities=5% Similarity=0.203 Sum_probs=18.1
Q ss_pred CCCeEEecCcCChHHHHHHHhc
Q psy6613 146 PGMIIITRVTADISLAKRSLMS 167 (510)
Q Consensus 146 ~~RpI~GPsGvGKsTL~~rLL~ 167 (510)
.+-++.||+|+|||++.+.+..
T Consensus 180 kgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3344499999999999998887
No 301
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=81.04 E-value=7.1 Score=36.02 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHcCCeEEEEeccCC----chhHhhhcCCCceEEEEeCCCHHHHHHHHHhcCC
Q psy6613 190 TEIERVYELASTLQLVVLDCDTIN----HPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGK 247 (510)
Q Consensus 190 TslesI~~vi~sGKi~ILDID~qg----~~lq~lks~l~PivIFIkPPS~e~L~~rLr~Rgt 247 (510)
...+.+.+++..+ .||+.+-.-. ...++++ -..++|||.. +.+++.+|+..++.
T Consensus 50 ~E~~~l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~--~~g~vI~L~~-~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 50 LESEALRELLKEN-NCVIACGGGIVLKEENRELLK--ENGLVIYLDA-DPEELAERLRARDN 107 (158)
T ss_dssp HHHHHHHHHHCSS-SEEEEE-TTGGGSHHHHHHHH--HHSEEEEEE---HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhccC-cEEEeCCCCCcCcHHHHHHHH--hCCEEEEEeC-CHHHHHHHHhCCCC
Confidence 4666777777776 7777773311 0022223 1356888866 57888888877654
No 302
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=81.03 E-value=1.4 Score=42.38 Aligned_cols=18 Identities=17% Similarity=-0.014 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 35 l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 35 IVGPSGSGKSTLLNILGG 52 (218)
T ss_pred EEcCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 303
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=81.02 E-value=3.1 Score=45.38 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=37.7
Q ss_pred EEecCcCChHHHHHHHhc-C----CCCceee-ec-CCCchh--hhhhhc--------------------ccHHHHHHHHH
Q psy6613 150 IITRVTADISLAKRSLMS-N----PSKRAIM-ER-SNSRSS--VLTEVQ--------------------TEIERVYELAS 200 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~----P~~F~~s-Vs-hTTR~p--Fe~~I~--------------------TslesI~~vi~ 200 (510)
|+||+|+|||||.+.+.+ . ++...+. +. ...+.. |.+.+. +-.+..+....
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~ 252 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 252 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHH
Confidence 499999999999998776 2 3222222 22 211222 332220 22334445567
Q ss_pred cCCeEEEEeccCC
Q psy6613 201 TLQLVVLDCDTIN 213 (510)
Q Consensus 201 sGKi~ILDID~qg 213 (510)
.|+.|||=+|--.
T Consensus 253 ~GkdVVLlIDEit 265 (415)
T TIGR00767 253 HKKDVVILLDSIT 265 (415)
T ss_pred cCCCeEEEEEChh
Confidence 8999999998744
No 304
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=80.90 E-value=1.2 Score=38.23 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+|||||.+.|+.
T Consensus 3 ki~~~G~~~~GKstl~~~l~~ 23 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLG 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 455 99999999999999987
No 305
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=80.85 E-value=1.2 Score=40.37 Aligned_cols=20 Identities=5% Similarity=-0.041 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|+.|||||||.++|+.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~ 23 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYAD 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999997
No 306
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.80 E-value=1.5 Score=42.78 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 32 IGPSGSGKSTLLRLIVG 48 (235)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 307
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=80.76 E-value=1.1 Score=40.35 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999987
No 308
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=80.70 E-value=1.8 Score=45.48 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=18.3
Q ss_pred CCCeEEecCcCChHHHHHHHhc
Q psy6613 146 PGMIIITRVTADISLAKRSLMS 167 (510)
Q Consensus 146 ~~RpI~GPsGvGKsTL~~rLL~ 167 (510)
.+-++.||+|+|||++.+.+..
T Consensus 157 ~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3444599999999999999887
No 309
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=80.68 E-value=1.3 Score=42.56 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 35 ~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILG 51 (216)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 310
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.65 E-value=10 Score=43.87 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=16.2
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||||+.+.|.+
T Consensus 41 LF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 41 LFTGTRGVGKTTIARILAK 59 (702)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4499999999999987765
No 311
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=80.65 E-value=1.2 Score=35.82 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|+||||+.+.|.+
T Consensus 5 ~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 5 TGGSGSGKSTVAKKLAE 21 (69)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999998887
No 312
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=80.61 E-value=1.2 Score=40.92 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 555 99999999999999986
No 313
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=80.58 E-value=1.3 Score=42.43 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=17.0
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++++.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~ 31 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLT 31 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 454 99999999999987765
No 314
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=80.52 E-value=1.4 Score=45.24 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.5
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+||||||+.+.|..
T Consensus 31 Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 4565 99999999999999987
No 315
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=80.46 E-value=1.5 Score=40.63 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=18.1
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|..|||||+|.++++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~ 22 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK 22 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 455 99999999999999997
No 316
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=80.45 E-value=1.4 Score=42.33 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=16.2
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|+|||||.++|+.
T Consensus 12 vG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 12 AAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ECCCCChHHHHHHHHHH
Confidence 89999999999999987
No 317
>KOG3220|consensus
Probab=80.34 E-value=21 Score=35.87 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=48.8
Q ss_pred HHcCCeEEEEeccCCchhHhhhc-CCCceEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHhcCCCCccE
Q psy6613 199 ASTLQLVVLDCDTINHPSQLAKT-NLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAA----EKLAQCPQEMFDV 273 (510)
Q Consensus 199 i~sGKi~ILDID~qg~~lq~lks-~l~PivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL~aa----~eLEq~~~~~FD~ 273 (510)
+.--+.||||+..- .+. +. .+.-.+|-+-.+.-.+|++.++. +.-+++....|+.+- ++.++. |+
T Consensus 104 l~G~r~ivlDiPLL---FE~-~~~~~~~~tvvV~cd~~~Ql~Rl~~R-d~lse~dAe~Rl~sQmp~~~k~~~a-----~~ 173 (225)
T KOG3220|consen 104 LRGYRVIVLDIPLL---FEA-KLLKICHKTVVVTCDEELQLERLVER-DELSEEDAENRLQSQMPLEKKCELA-----DV 173 (225)
T ss_pred hcCCeEEEEechHH---HHH-hHHhheeeEEEEEECcHHHHHHHHHh-ccccHHHHHHHHHhcCCHHHHHHhh-----he
Confidence 33456899999762 233 22 34444566666666777766654 444555666666322 334443 78
Q ss_pred EEeC-CCHHHHHHHHHH
Q psy6613 274 ILDE-NQLEDACEHIAE 289 (510)
Q Consensus 274 VIvN-DdLd~A~~eL~~ 289 (510)
||.| .++++.++++..
T Consensus 174 Vi~Nng~~~~l~~qv~~ 190 (225)
T KOG3220|consen 174 VIDNNGSLEDLYEQVEK 190 (225)
T ss_pred eecCCCChHHHHHHHHH
Confidence 9975 568888888873
No 318
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=80.27 E-value=1.4 Score=39.89 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|+.|||||+|.++|..
T Consensus 4 ki~iiG~~~vGKTsli~~~~~ 24 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTE 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999987
No 319
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=80.24 E-value=1.3 Score=47.61 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=26.1
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p 183 (510)
+|.++||||||.+.|.. .| .....|.|||.|
T Consensus 165 VG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p 196 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVP 196 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcc--cccCCCCCccCc
Confidence 89999999999999998 66 234468899998
No 320
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.23 E-value=4 Score=47.10 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=16.4
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||.|+||+|+.+.|.+
T Consensus 42 LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4499999999999988776
No 321
>KOG0738|consensus
Probab=80.21 E-value=8 Score=42.30 Aligned_cols=83 Identities=12% Similarity=0.241 Sum_probs=48.8
Q ss_pred CeEEecCcCChHHHHHHHhc-CCCCceeeecCCCchh-hhhhhcccHHHHHHHHHcCCeEEEEeccCCchhHhhhcCCCc
Q psy6613 148 MIIITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS-VLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSP 225 (510)
Q Consensus 148 RpI~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p-Fe~~I~TslesI~~vi~sGKi~ILDID~qg~~lq~lks~l~P 225 (510)
-+++||+|.|||.|.+.+.. .--.| |-|+.+|=.. .-.+ | +.+-+ |+||+ -....|
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tTF-FNVSsstltSKwRGe---S-EKlvR-------lLFem----------ARfyAP 305 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGTTF-FNVSSSTLTSKWRGE---S-EKLVR-------LLFEM----------ARFYAP 305 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcCeE-EEechhhhhhhhccc---h-HHHHH-------HHHHH----------HHHhCC
Confidence 34499999999999988876 32222 3355443222 1000 0 00110 01110 014578
Q ss_pred eEEEEeCCCHHHHHHHHHhcCCCcHHHHHHHH
Q psy6613 226 CIVYLKISSPKVLQRLIKSRGKSQTRHLNVQM 257 (510)
Q Consensus 226 ivIFIkPPS~e~L~~rLr~Rgt~~~e~i~kRL 257 (510)
-+||| +++......||.+++.+..+|+
T Consensus 306 StIFi-----DEIDslcs~RG~s~EHEaSRRv 332 (491)
T KOG0738|consen 306 STIFI-----DEIDSLCSQRGGSSEHEASRRV 332 (491)
T ss_pred ceeeh-----hhHHHHHhcCCCccchhHHHHH
Confidence 89997 6788888889999887777777
No 322
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.18 E-value=1.3 Score=45.19 Aligned_cols=17 Identities=35% Similarity=0.139 Sum_probs=15.5
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||||+|||||.+.|-.
T Consensus 36 IG~SGaGKSTLLR~lng 52 (258)
T COG3638 36 IGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 99999999999998765
No 323
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=80.17 E-value=1.4 Score=41.86 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|+.|||||+|..+|+.
T Consensus 8 kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 455 99999999999999987
No 324
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=80.04 E-value=1.6 Score=42.38 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 19 ~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCG 35 (213)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 325
>PTZ00301 uridine kinase; Provisional
Probab=80.02 E-value=1.2 Score=43.94 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCceEEEEeCCCHHHHHHHHH----hcCCCcHHHHHHHH-HHHH----HHHhcCCCCccEEEeC-CCHHHHHHHHHHHHH
Q psy6613 223 LSPCIVYLKISSPKVLQRLIK----SRGKSQTRHLNVQM-VAAE----KLAQCPQEMFDVILDE-NQLEDACEHIAEYLE 292 (510)
Q Consensus 223 l~PivIFIkPPS~e~L~~rLr----~Rgt~~~e~i~kRL-~aa~----eLEq~~~~~FD~VIvN-DdLd~A~~eL~~ile 292 (510)
+.-+.|||..|.-..+.+|++ .||.+. +...++. .... +.-.-+.+.-|+||.+ .+.+.++.-|...|.
T Consensus 126 l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~-e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~ 204 (210)
T PTZ00301 126 EMDCLIFVDTPLDICLIRRAKRDMRERGRTF-ESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN 204 (210)
T ss_pred hCCEEEEEeCChhHHHHHHHhhhHHhcCCCH-HHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence 445679999987666666653 255543 3334433 2111 1112234677999964 556677776664444
Q ss_pred H
Q psy6613 293 A 293 (510)
Q Consensus 293 a 293 (510)
+
T Consensus 205 ~ 205 (210)
T PTZ00301 205 H 205 (210)
T ss_pred H
Confidence 3
No 326
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=80.00 E-value=1.5 Score=42.08 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 36 i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 36 IVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 327
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=79.99 E-value=1.5 Score=40.63 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=17.9
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|.+|||||||.++|+.
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 454 99999999999999997
No 328
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=79.98 E-value=1.6 Score=44.70 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.0
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||.|+|||||.+-|..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 4554 99999999999998877
No 329
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=79.93 E-value=1.5 Score=39.03 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++++.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 444 99999999999999987
No 330
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=79.86 E-value=3.8 Score=38.99 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=16.5
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|+|||++...++.
T Consensus 4 i~G~~~sGKS~~a~~~~~ 21 (169)
T cd00544 4 VTGGARSGKSRFAERLAA 21 (169)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 489999999999999886
No 331
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=79.79 E-value=3.7 Score=43.19 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred eEEecCcCChHHHHHHHhc-----CCCCceeeecCCCchh---hhhh--------------hcccHHHHHHHHH------
Q psy6613 149 IIITRVTADISLAKRSLMS-----NPSKRAIMERSNSRSS---VLTE--------------VQTEIERVYELAS------ 200 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~-----~P~~F~~sVshTTR~p---Fe~~--------------I~TslesI~~vi~------ 200 (510)
++.||.|+||.++...+.. +|..-. ++.+-.. |+.. -...++.|+++.+
T Consensus 28 Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~ 104 (334)
T PRK07993 28 LIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA 104 (334)
T ss_pred eeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhcc
Confidence 4589999999998765432 232111 2221111 1111 0146788888765
Q ss_pred ---cCCeEEEEe----ccCCchhHhhhc--CCCceEEEEeC-CCHHHHHHHHHhcC
Q psy6613 201 ---TLQLVVLDC----DTINHPSQLAKT--NLSPCIVYLKI-SSPKVLQRLIKSRG 246 (510)
Q Consensus 201 ---sGKi~ILDI----D~qg~~lq~lks--~l~PivIFIkP-PS~e~L~~rLr~Rg 246 (510)
.-|+||+|- ..++ +-.++|+ +..+.++||.. .+.+.|-..+++|.
T Consensus 105 ~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 356777762 2233 2345676 55666666654 45787888888875
No 332
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=79.78 E-value=1.3 Score=41.46 Aligned_cols=20 Identities=0% Similarity=-0.061 Sum_probs=17.5
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+|||||.++|..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~ 23 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTL 23 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 455 99999999999999974
No 333
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=79.69 E-value=1.6 Score=41.86 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 34 LGHNGAGKTTTLKMLTG 50 (220)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 334
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=79.63 E-value=1.4 Score=39.23 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=16.6
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|||||+|.++|..
T Consensus 4 ~vG~~~~GKTsl~~~l~~ 21 (162)
T cd04157 4 VVGLDNSGKTTIINQLKP 21 (162)
T ss_pred EECCCCCCHHHHHHHHcc
Confidence 399999999999999987
No 335
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=79.54 E-value=1.3 Score=48.34 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=27.5
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
+++ +|++|||||+|.++|+.....+....+.|||..
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~ 241 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDV 241 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEE
Confidence 444 999999999999999973323455678888865
No 336
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=79.50 E-value=4.1 Score=44.15 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=30.5
Q ss_pred HHHHHHcCCeEEEEeccCCchh----HhhhcCC-CceEEEEeCCCHHHHHHHHHh
Q psy6613 195 VYELASTLQLVVLDCDTINHPS----QLAKTNL-SPCIVYLKISSPKVLQRLIKS 244 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~l----q~lks~l-~PivIFIkPPS~e~L~~rLr~ 244 (510)
+..+.+.|+.+|+-.+....-+ ..+++.+ .-.+|-|.||+.+.+.+.++.
T Consensus 237 ~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 237 FNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred HHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 3455667888888776432001 1233334 347788899998877766654
No 337
>KOG3775|consensus
Probab=79.49 E-value=1.1 Score=47.99 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=46.4
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecChhHHH
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLE 111 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~~~~E 111 (510)
=||+|.|-|.+.+ +|-+..||-++|-...|+.|..|-+.++ |+.|++|+..-.|
T Consensus 265 HR~~~rFvPRHpD-------ELeLEIgDav~Ve~eadD~W~~G~NlRT-G~~GIFPA~ya~e 318 (482)
T KOG3775|consen 265 HRAVFRFVPRHPD-------ELELEIGDAVLVEAEADDFWFEGFNLRT-GERGIFPAFYAHE 318 (482)
T ss_pred hhhhhhccCCCcc-------eeeeecCCeeEeeecccchhhccccccc-cccccccceeEEe
Confidence 4788888888765 5899999999999999999999999875 7899999876554
No 338
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=79.47 E-value=1.6 Score=41.99 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 37 ~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 37 VGESGSGKSTLARAILG 53 (228)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 339
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=79.39 E-value=1.8 Score=41.34 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 31 LTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998776
No 340
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=79.39 E-value=1.3 Score=40.27 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.+++..
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 455 99999999999999987
No 341
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=79.32 E-value=1.6 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.134 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 33 l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINR 50 (243)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998776
No 342
>KOG0199|consensus
Probab=79.31 E-value=1.7 Score=50.32 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=39.7
Q ss_pred EEEeeccCCCCCCCCCCCCccccccCCceEEEEeec-CCCceEEEEccCCCceeeecChhHH
Q psy6613 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY-DSNWWIGRLVKEGSECGFIPSPVKL 110 (510)
Q Consensus 50 VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~-d~~WWqar~v~~~~~~GlIPS~~~~ 110 (510)
++|..+|+..+. ..|.|++||.|.|++-. -+.||.|++.+ +.+.|.||...--
T Consensus 377 ~~a~~~~d~~ep-------~aLh~~kgD~IvVIegs~a~y~WfgQn~R-n~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEP-------GALHLTKGDEIVVIEGSGAGYDWFGQNKR-NQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCC-------CceeeccCCeEEEEecCCccceeeccccc-cceecccCcceee
Confidence 345556665554 36999999999999964 46899998864 4689999976654
No 343
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=79.28 E-value=1.4 Score=40.99 Aligned_cols=20 Identities=0% Similarity=0.086 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|+.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~ 22 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVH 22 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999997
No 344
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=79.24 E-value=1.7 Score=41.46 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 32 IGPSGSGKSTLLRCINL 48 (213)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 345
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.23 E-value=4.6 Score=46.97 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.5
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||+|+||||+.+.+.+
T Consensus 56 LL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 56 ILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4499999999999998776
No 346
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=79.18 E-value=1.6 Score=39.56 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=16.6
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|+|||||.++++.
T Consensus 5 i~G~~~~GKTsl~~~~~~ 22 (174)
T cd04135 5 VVGDGAVGKTCLLMSYAN 22 (174)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 399999999999999987
No 347
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=79.10 E-value=1.7 Score=40.11 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|+.|||||+|.++|+.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~ 22 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQ 22 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999997
No 348
>PF05729 NACHT: NACHT domain
Probab=79.00 E-value=1.5 Score=39.08 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=15.6
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|+.|+||||+..+++.
T Consensus 6 ~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 6 SGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred ECCCCCChHHHHHHHHH
Confidence 89999999999998774
No 349
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=78.95 E-value=1.3 Score=40.43 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=14.1
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+|||++.++++.
T Consensus 30 ~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 30 TGESGSGKTSLLRALLD 46 (185)
T ss_dssp -B-TTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999998886
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.95 E-value=1.8 Score=41.50 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 31 ~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 31 VGPNGTGKTTAVKILAG 47 (177)
T ss_pred ECCCCChHHHHHHHHHc
Confidence 99999999999998876
No 351
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=78.91 E-value=5.4 Score=45.04 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=16.6
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||+|+.+.|.+
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3489999999999998876
No 352
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.91 E-value=1.6 Score=41.84 Aligned_cols=18 Identities=6% Similarity=0.040 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 353
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=78.89 E-value=1.6 Score=40.19 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=16.5
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|||||+|.++|..
T Consensus 4 ~~G~~~~GKTsl~~~l~~ 21 (167)
T cd04161 4 TVGLDNAGKTTLVSALQG 21 (167)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999999986
No 354
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=78.89 E-value=1.6 Score=42.25 Aligned_cols=17 Identities=24% Similarity=0.007 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 32 ~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 32 IGPSGCGKSTLLRLLNR 48 (227)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999998876
No 355
>KOG1969|consensus
Probab=78.87 E-value=9.5 Score=44.52 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=17.0
Q ss_pred CceEEEEeCCCHHHHHHHHHh
Q psy6613 224 SPCIVYLKISSPKVLQRLIKS 244 (510)
Q Consensus 224 ~PivIFIkPPS~e~L~~rLr~ 244 (510)
.+.+|++.||+...|-+||+.
T Consensus 459 ~A~ii~f~~p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 459 FAEIIAFVPPSQSRLVERLNE 479 (877)
T ss_pred ceEEEEecCCChhHHHHHHHH
Confidence 345788899999999999864
No 356
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=78.86 E-value=1.8 Score=44.30 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.3
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||.|+|||||.+-++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 3455 99999999999999987
No 357
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.82 E-value=1.7 Score=42.14 Aligned_cols=18 Identities=33% Similarity=0.248 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 36 l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 36 IIGRSGAGKSTLIRCING 53 (233)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 358
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=78.81 E-value=1.8 Score=41.36 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 359
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=78.73 E-value=1.5 Score=39.18 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=17.2
Q ss_pred eE-EecCcCChHHHHHHHhc
Q psy6613 149 II-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~ 167 (510)
++ +|++|+|||++.++|+.
T Consensus 3 i~v~G~~~~GKSsli~~l~~ 22 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTD 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 44 99999999999999987
No 360
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=78.73 E-value=1.8 Score=41.56 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=16.0
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999997765
No 361
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=78.69 E-value=1.5 Score=39.49 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|+.
T Consensus 5 ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999986
No 362
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.65 E-value=1.6 Score=42.71 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 34 ~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 34 LGPSGSGKTTLLRLIAG 50 (239)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 363
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=78.65 E-value=1.9 Score=41.34 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 31 ~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 31 VGPNGAGKSTLLKAILG 47 (213)
T ss_pred ECCCCCCHHHHHHHHcC
Confidence 99999999999998776
No 364
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.64 E-value=14 Score=40.90 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=16.3
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||||+.+.+.+
T Consensus 40 Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 40 IFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4499999999999987765
No 365
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=78.62 E-value=1.5 Score=39.87 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|.+|||||||.++++.
T Consensus 6 vG~~~vGKTsli~~~~~ 22 (161)
T cd04124 6 LGDSAVGKSKLVERFLM 22 (161)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999999987
No 366
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=78.61 E-value=1.5 Score=42.30 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=17.7
Q ss_pred CCeE-EecCcCChHHHHHHHhc
Q psy6613 147 GMII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~ 167 (510)
|-++ +||+|+||||+...|+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3444 99999999999998887
No 367
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=78.57 E-value=1.8 Score=44.20 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.9
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+|+|||||.+.|..
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 4444 99999999999998887
No 368
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=78.50 E-value=1.5 Score=39.53 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=16.1
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|||||||.++|..
T Consensus 13 ~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 99999999999999985
No 369
>KOG3725|consensus
Probab=78.47 E-value=1.1 Score=45.86 Aligned_cols=51 Identities=22% Similarity=0.467 Sum_probs=43.1
Q ss_pred EEEEeeccCCCCCCCCCCCCccccccCCceEEEEee--cCCCceEEEEccCCCceeeecChhH
Q psy6613 49 AVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK--YDSNWWIGRLVKEGSECGFIPSPVK 109 (510)
Q Consensus 49 ~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~--~d~~WWqar~v~~~~~~GlIPS~~~ 109 (510)
-.|.+|||++.... +|++-..|||.|-.- .|.+|.+|.+ |+..|-+|...+
T Consensus 319 kArVlyDYdAa~s~-------ElslladeiitVyslpGMD~dwlmgEr---GnkkGKvPvtYl 371 (375)
T KOG3725|consen 319 KARVLYDYDAALSQ-------ELSLLADEIITVYSLPGMDADWLMGER---GNKKGKVPVTYL 371 (375)
T ss_pred ceeeeecccccchh-------hhhhhhcceEEEEecCCCChHHhhhhh---cCCCCCcchhHH
Confidence 47899999998764 699999999999884 7999999987 678888887665
No 370
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=78.42 E-value=1.8 Score=39.00 Aligned_cols=20 Identities=5% Similarity=0.029 Sum_probs=17.5
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|..|||||+|..+++.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~ 23 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 455 99999999999999886
No 371
>PRK06547 hypothetical protein; Provisional
Probab=78.37 E-value=1.7 Score=41.44 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+||||+.+.|.+
T Consensus 21 ~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 21 DGRSGSGKTTLAGALAA 37 (172)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999976
No 372
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.36 E-value=4.9 Score=44.70 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=15.3
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||+|+.+-|.+
T Consensus 39 Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 39 LLVGASGVGKTTCARIISL 57 (491)
T ss_pred EEECCCCccHHHHHHHHHH
Confidence 4499999999998876543
No 373
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=78.31 E-value=2 Score=41.07 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=15.6
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+-|..
T Consensus 34 ~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYG 50 (214)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999987766
No 374
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.22 E-value=1.8 Score=42.03 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 375
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.18 E-value=2.9 Score=45.79 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.2
Q ss_pred CCCeEEecCcCChHHHHHHHhc
Q psy6613 146 PGMIIITRVTADISLAKRSLMS 167 (510)
Q Consensus 146 ~~RpI~GPsGvGKsTL~~rLL~ 167 (510)
.+-++.||+|+|||++.+.+..
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3444599999999999998877
No 376
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=78.18 E-value=1.9 Score=39.04 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+|++|||||+|.++++.
T Consensus 3 i~G~~~vGKTsli~~~~~ 20 (174)
T smart00174 3 VVGDGAVGKTCLLISYTT 20 (174)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 499999999999999987
No 377
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.17 E-value=1.7 Score=41.91 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+-|..
T Consensus 36 ~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 36 VGPSGCGKSTLLRIIAG 52 (220)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 378
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=78.16 E-value=1.7 Score=45.00 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=15.6
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+++||||+||||+.+++-.
T Consensus 31 vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 31 VLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEECCCCCcHHHHHHHHhc
Confidence 3499999999999887654
No 379
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=78.14 E-value=1.2 Score=40.82 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=15.8
Q ss_pred CeE-EecCcCChHHHHHHHhcC
Q psy6613 148 MII-ITRVTADISLAKRSLMSN 168 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~ 168 (510)
|++ +|+.|+|||||.+.|-++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 455 899999999999999875
No 380
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=78.13 E-value=1.7 Score=41.18 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 29 i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 29 IIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 381
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.09 E-value=5.5 Score=47.44 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=16.9
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||.|+||||+.+.|.+
T Consensus 42 LFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4599999999999998886
No 382
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=78.05 E-value=3.8 Score=42.33 Aligned_cols=19 Identities=0% Similarity=-0.052 Sum_probs=16.9
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||+|+|||++.+.+.+
T Consensus 55 ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 55 LLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred EEECCCCccHHHHHHHHHH
Confidence 4499999999999998877
No 383
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=78.03 E-value=6.2 Score=42.59 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=15.6
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||+|+||+++...|.+
T Consensus 40 Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 40 LFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 3489999999999887654
No 384
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.03 E-value=1.9 Score=41.15 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 31 LLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 385
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=77.98 E-value=1.6 Score=39.88 Aligned_cols=20 Identities=15% Similarity=-0.018 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++++.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~ 26 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTD 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 444 99999999999999987
No 386
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.97 E-value=2 Score=41.13 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 29 l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 29 IVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 387
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=77.94 E-value=6.1 Score=42.07 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=29.3
Q ss_pred HHHHHHcCCeEEEEeccCCchhH----hhhcCCC-ceEEEEeCCCHHHHHHHHHh
Q psy6613 195 VYELASTLQLVVLDCDTINHPSQ----LAKTNLS-PCIVYLKISSPKVLQRLIKS 244 (510)
Q Consensus 195 I~~vi~sGKi~ILDID~qg~~lq----~lks~l~-PivIFIkPPS~e~L~~rLr~ 244 (510)
+..+.+.|+.+|+-.+-....+. .+++.+. -.+|-|.||+.+.....++.
T Consensus 225 ~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 225 FNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred HHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 44555678888887763220121 1233333 46788999998876666554
No 388
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=77.94 E-value=1.9 Score=40.76 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=17.9
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||||.++|..
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhc
Confidence 454 99999999999999987
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=77.83 E-value=2.2 Score=39.48 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+||||+.+.|.+
T Consensus 28 ~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 28 KGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 99999999999999987
No 390
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=77.74 E-value=1.8 Score=39.70 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=16.9
Q ss_pred eE-EecCcCChHHHHHHHhc
Q psy6613 149 II-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~ 167 (510)
++ +|++|||||+|..+++.
T Consensus 3 i~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 44 99999999999999876
No 391
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.74 E-value=4.1 Score=44.47 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=26.5
Q ss_pred CCCeE--EecCcCChHHHHHHHhc------CCCCceeeecCCCchh
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS------NPSKRAIMERSNSRSS 183 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~------~P~~F~~sVshTTR~p 183 (510)
.+.++ +||.|+||||+..+|.. .+..-++....|-|.-
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig 235 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG 235 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh
Confidence 34555 99999999999998754 2345556566666654
No 392
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=77.74 E-value=1.7 Score=39.48 Aligned_cols=20 Identities=30% Similarity=0.139 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|..|||||+|.++|+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~ 22 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVS 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999987
No 393
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.70 E-value=2.1 Score=41.31 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 394
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=77.66 E-value=21 Score=37.28 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCceEEEEeCCCHHHHHHHHHh-cC---CCcHHHHHHHHHHHHHHHhcCCCCccEEEeCCCHHHHHHHHHHHHHHHHHh
Q psy6613 222 NLSPCIVYLKISSPKVLQRLIKS-RG---KSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRA 297 (510)
Q Consensus 222 ~l~PivIFIkPPS~e~L~~rLr~-Rg---t~~~e~i~kRL~aa~eLEq~~~~~FD~VIvNDdLd~A~~eL~~ileai~~a 297 (510)
....-+||+-. |-++|-+|... |. -.....+..-++...++-.-....-|+||...++. ..+|++.|..++..
T Consensus 80 ~~~~~ilFLdA-~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~--~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 80 GIDVRILFLDA-SDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTSNLS--VHQLRERIRERFGG 156 (284)
T ss_pred CCceEEEEEEC-ChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCC--HHHHHHHHHHHhcc
Confidence 46777888888 45777777653 11 11111122224222222111234679999988885 47888777766653
No 395
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=77.61 E-value=5.8 Score=45.37 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCeEEEEeccC--C--chhHhhhcCC-CceEEEEeCCCHHHHHHHHHh
Q psy6613 193 ERVYELASTLQLVVLDCDTI--N--HPSQLAKTNL-SPCIVYLKISSPKVLQRLIKS 244 (510)
Q Consensus 193 esI~~vi~sGKi~ILDID~q--g--~~lq~lks~l-~PivIFIkPPS~e~L~~rLr~ 244 (510)
..+..+.++|+.+||-.+.. . .....|++-| .-++|-|.+|+.+.....|+.
T Consensus 401 ~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 401 HTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred HHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 44555667788888877642 1 0122344433 578899999998877766654
No 396
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=77.56 E-value=2 Score=38.93 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++++.
T Consensus 7 ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 454 99999999999999987
No 397
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=77.47 E-value=1.5 Score=41.61 Aligned_cols=17 Identities=0% Similarity=-0.060 Sum_probs=15.1
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+|||||.+++++
T Consensus 5 TG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 5 TGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp ES-TTSSHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 89999999999999887
No 398
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=77.45 E-value=1.8 Score=41.13 Aligned_cols=35 Identities=11% Similarity=-0.088 Sum_probs=25.8
Q ss_pred CeE-EecCcCChHHHHHHHhc-CCCCceeeecCCCchh
Q psy6613 148 MII-ITRVTADISLAKRSLMS-NPSKRAIMERSNSRSS 183 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~-~P~~F~~sVshTTR~p 183 (510)
++. +|.++||||||.+.|.. .. .-....|.|||..
T Consensus 119 ~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~ 155 (172)
T cd04178 119 TVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSM 155 (172)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcce
Confidence 444 99999999999999997 33 2233467888853
No 399
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=77.44 E-value=2 Score=39.03 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=16.5
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|++|+|||+|..+++.
T Consensus 5 vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 5 LIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EECcCCCCHHHHHHHHhc
Confidence 399999999999999986
No 400
>KOG4792|consensus
Probab=77.30 E-value=2.7 Score=42.53 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=40.9
Q ss_pred eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEeecCCCceEEEEccCCCceeeecCh
Q psy6613 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107 (510)
Q Consensus 47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~~~d~~WWqar~v~~~~~~GlIPS~ 107 (510)
+.|.|+.++-.|.-=+ ..+|.++.|||+.|+.+.-++-|.|.+ +|+.|.+|-.
T Consensus 227 Pa~Arv~q~RVPnAYD-----kTaL~levGdiVkVTk~ninGqwegEl---nGk~G~fPfT 279 (293)
T KOG4792|consen 227 PAYARVIQKRVPNAYD-----KTALALEVGDIVKVTKKNINGQWEGEL---NGKIGHFPFT 279 (293)
T ss_pred ChheeeehhcCCCccC-----hhhhhhhcCcEEEEEeeccCceeeeee---cCccccccce
Confidence 3466676665544321 247999999999999999999999998 6789999954
No 401
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.18 E-value=2.1 Score=41.41 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 34 i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 34 IVGPTGAGKTTLINLLMR 51 (229)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 402
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.18 E-value=2.2 Score=40.02 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998886
No 403
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=77.18 E-value=1.7 Score=39.95 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++++|||||++.|++
T Consensus 6 vG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 6 VGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999987
No 404
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=77.17 E-value=2.2 Score=42.54 Aligned_cols=17 Identities=0% Similarity=-0.099 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAG 49 (255)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 405
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=77.16 E-value=2.2 Score=40.75 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 406
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.06 E-value=7.3 Score=44.24 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.4
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||+|+.+.|.+
T Consensus 39 Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 39 LFSGPRGCGKTSSARILAR 57 (584)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4499999999999988775
No 407
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=77.03 E-value=2.1 Score=38.12 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|+|||+|.++|..
T Consensus 6 vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 6 VGNGNVGKSSMIQRFVK 22 (162)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999987
No 408
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=76.99 E-value=1.7 Score=41.27 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||++.+.|-+
T Consensus 9 ~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 9 AGPSGVGKTELAKALAE 25 (171)
T ss_dssp ESSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999998877
No 409
>PRK13796 GTPase YqeH; Provisional
Probab=76.99 E-value=1.8 Score=45.84 Aligned_cols=33 Identities=3% Similarity=-0.114 Sum_probs=25.4
Q ss_pred EecCcCChHHHHHHHhc-CCC---Cc-eeeecCCCchh
Q psy6613 151 ITRVTADISLAKRSLMS-NPS---KR-AIMERSNSRSS 183 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~---~F-~~sVshTTR~p 183 (510)
+|.++||||||.+.|+. .-. .. ....|+|||..
T Consensus 166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 166 VGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred EcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 99999999999999996 311 11 34578999975
No 410
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=76.92 E-value=1.7 Score=39.85 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=18.3
Q ss_pred CCeE-EecCcCChHHHHHHHhc
Q psy6613 147 GMII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI-~GPsGvGKsTL~~rLL~ 167 (510)
.+++ +|++|||||+|.++|..
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~ 36 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLG 36 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHcc
Confidence 3555 99999999999999986
No 411
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=76.86 E-value=8.3 Score=39.14 Aligned_cols=96 Identities=7% Similarity=-0.016 Sum_probs=51.4
Q ss_pred EEecCcCChHHHHHHHhc-CC--CCceeeecCCCchh-h--------hhhhc-ccHHHHHHHHHcCCeEEEEeccCCch-
Q psy6613 150 IITRVTADISLAKRSLMS-NP--SKRAIMERSNSRSS-V--------LTEVQ-TEIERVYELASTLQLVVLDCDTINHP- 215 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~-~P--~~F~~sVshTTR~p-F--------e~~I~-TslesI~~vi~sGKi~ILDID~qg~~- 215 (510)
|+||.|+||||+.+.|+. -+ ..-.+.+-. ...- + ..... +--+.++.+++.+-.+|+--+..+..
T Consensus 85 isG~tGSGKTT~l~all~~i~~~~~~iitiEd-p~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~ 163 (264)
T cd01129 85 VTGPTGSGKTTTLYSALSELNTPEKNIITVED-PVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRDAET 163 (264)
T ss_pred EECCCCCcHHHHHHHHHhhhCCCCCeEEEECC-CceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHH
Confidence 399999999999998887 32 222222211 1110 0 00000 34466777777777777777665511
Q ss_pred hH-hhhc--CCCceEEEEeCCCHHHHHHHHHhcC
Q psy6613 216 SQ-LAKT--NLSPCIVYLKISSPKVLQRLIKSRG 246 (510)
Q Consensus 216 lq-~lks--~l~PivIFIkPPS~e~L~~rLr~Rg 246 (510)
+. .++. .-+.++-=|...|....-.|+...+
T Consensus 164 a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~~~ 197 (264)
T cd01129 164 AEIAVQAALTGHLVLSTLHTNDAPGAITRLLDMG 197 (264)
T ss_pred HHHHHHHHHcCCcEEEEeccCCHHHHHHHHHHhC
Confidence 11 2222 2244333466666666666665544
No 412
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=76.86 E-value=2.2 Score=43.99 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+|+|||||.+.|..
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 4455 99999999999998887
No 413
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=76.85 E-value=2 Score=41.69 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 31 LIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 399999999999998776
No 414
>KOG1451|consensus
Probab=76.82 E-value=2.5 Score=47.75 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=39.9
Q ss_pred eeEEEEeeccCCCCCCCCCCCCccccccCCceEEEEe-ecCCCceEEEEccCCCceeeecChh
Q psy6613 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKE-KYDSNWWIGRLVKEGSECGFIPSPV 108 (510)
Q Consensus 47 ~~~VRAlfdY~~~~D~~iPc~e~~LsF~~GDiL~V~~-~~d~~WWqar~v~~~~~~GlIPS~~ 108 (510)
.--+.++|.-.+.++. .|+|..|-|+.=+- ...++|-+|+. +|..||||++.
T Consensus 756 ~rk~k~lyAc~a~h~s-------elsf~~gt~f~nv~~S~e~Gwl~GtL---nGktglip~ny 808 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHS-------ELSFEPGTIFTNVYESNEDGWLVGTL---NGKTGLIPSNY 808 (812)
T ss_pred cccccceeccCCCCcc-------cccccCcceeeeecccCCCCceeeec---CCCcccCcccc
Confidence 3346677777776664 69999999886554 55678999998 67899999975
No 415
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.69 E-value=1.8 Score=41.46 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 31 ~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 31 LGPNGAGKTTLMRILAT 47 (211)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 416
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=76.68 E-value=2 Score=41.90 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 41 ~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGG 57 (233)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999998876
No 417
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.63 E-value=2.2 Score=41.83 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 32 LIGPSGSGKTTTMKMINR 49 (242)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 418
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=76.58 E-value=18 Score=35.47 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=15.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|-.++||.++.+.|.+
T Consensus 5 sGKrksGKD~~a~~l~~ 21 (182)
T TIGR01223 5 SGKRKSGKDFVTEALQS 21 (182)
T ss_pred ecCCCCChHHHHHHHHH
Confidence 89999999999998876
No 419
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=76.57 E-value=2.4 Score=39.39 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+|||||.++|..
T Consensus 20 ~i~ivG~~~~GKStlin~l~~ 40 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTN 40 (179)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 444 99999999999999987
No 420
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=76.55 E-value=2.2 Score=40.96 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 35 i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 35 IIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 421
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.51 E-value=2.8 Score=40.24 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=17.9
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+|+|||||.+.|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 4444 99999999999998887
No 422
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=76.45 E-value=2.2 Score=41.34 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||.|+||||+.++|+.
T Consensus 7 ~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 7 AGPVGSGKTALIEALTR 23 (199)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999998
No 423
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=76.41 E-value=2.4 Score=41.06 Aligned_cols=21 Identities=24% Similarity=0.117 Sum_probs=17.8
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+|+|||||.+.|..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 3444 99999999999998876
No 424
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=76.34 E-value=1.8 Score=42.21 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=15.4
Q ss_pred EEecCcCChHHHHHHHh
Q psy6613 150 IITRVTADISLAKRSLM 166 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL 166 (510)
|+||+|+|||||.+.|.
T Consensus 28 i~GpNGsGKStll~ai~ 44 (243)
T cd03272 28 VVGRNGSGKSNFFAAIR 44 (243)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 39999999999999876
No 425
>PLN02748 tRNA dimethylallyltransferase
Probab=76.29 E-value=5.3 Score=44.24 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=37.5
Q ss_pred EecCcCChHHHHHHHhc-CCCCceeeecCC-----------C-chhhhhh--h--------------------cccHHHH
Q psy6613 151 ITRVTADISLAKRSLMS-NPSKRAIMERSN-----------S-RSSVLTE--V--------------------QTEIERV 195 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~-~P~~F~~sVshT-----------T-R~pFe~~--I--------------------~TslesI 195 (510)
+||+|+|||+|...|.. .. +-.|+.- | +++-++. | .--...|
T Consensus 28 ~GptgsGKs~la~~la~~~~---~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A~~~I 104 (468)
T PLN02748 28 MGPTGSGKSKLAVDLASHFP---VEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHAVPLI 104 (468)
T ss_pred ECCCCCCHHHHHHHHHHhcC---eeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHHHHHH
Confidence 89999999999998887 33 1223322 2 2221110 0 0355778
Q ss_pred HHHHHcCCeEEEEecc
Q psy6613 196 YELASTLQLVVLDCDT 211 (510)
Q Consensus 196 ~~vi~sGKi~ILDID~ 211 (510)
.++...|++.||---.
T Consensus 105 ~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 105 EEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHhcCCCeEEEcCh
Confidence 8899999999986544
No 426
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.26 E-value=2.3 Score=43.47 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=20.7
Q ss_pred CCCeE--EecCcCChHHHHHHHhc--CCCC
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS--NPSK 171 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~--~P~~ 171 (510)
+|.++ +||||+|||||.+-++- .|++
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll~P~~ 62 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLLRPDK 62 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccCCCCC
Confidence 35555 99999999999998776 5654
No 427
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=76.24 E-value=2.2 Score=40.46 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=17.8
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|.+|+||||+.+.|+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg 22 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILG 22 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhC
Confidence 444 99999999999999997
No 428
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=76.17 E-value=2.1 Score=41.74 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=16.0
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 31 IMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998765
No 429
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=76.12 E-value=1.5 Score=36.71 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=16.1
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+.|+|||||.++|..
T Consensus 2 iG~~~~GKStl~~~l~~ 18 (157)
T cd00882 2 VGDSGVGKTSLLNRLLG 18 (157)
T ss_pred CCcCCCcHHHHHHHHHh
Confidence 69999999999999987
No 430
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=76.10 E-value=2.2 Score=46.67 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=16.1
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||||+|||||.+-|+.
T Consensus 367 vG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTG 383 (529)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999998887
No 431
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=76.07 E-value=4 Score=43.66 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcCCcEEEEEEecchhhHHhhc
Q psy6613 423 PSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSL 466 (510)
Q Consensus 423 p~~~~~~~~~~m~~al~~~l~~~f~~~i~~~~~~~d~~~~~~~~ 466 (510)
..+.|.++..+...|.+-.+++. +-.| ...||..|-..+
T Consensus 334 ~g~sgadl~~l~~eA~~~a~~~~---~~~i--~~~d~~~A~~~~ 372 (389)
T PRK03992 334 EGASGADLKAICTEAGMFAIRDD---RTEV--TMEDFLKAIEKV 372 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC---CCCc--CHHHHHHHHHHH
Confidence 44677788888888888777763 2122 257777776665
No 432
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.06 E-value=2.1 Score=42.22 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+-|..
T Consensus 36 ~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNR 52 (253)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999997776
No 433
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=76.06 E-value=2.1 Score=40.79 Aligned_cols=18 Identities=6% Similarity=0.098 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 31 FLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 434
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=76.05 E-value=2.4 Score=43.39 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 36 ~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 36 LGPNGAGKSTIARMLLG 52 (303)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 435
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=75.97 E-value=2.5 Score=40.93 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 436
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=75.95 E-value=2.1 Score=42.16 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 37 i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 37 LIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 399999999999998875
No 437
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=75.92 E-value=2.4 Score=41.47 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 438
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=75.90 E-value=2.8 Score=38.93 Aligned_cols=17 Identities=6% Similarity=0.008 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+.|+||||+.++|+.
T Consensus 6 ~G~~GsGKTtl~~~l~~ 22 (158)
T cd03112 6 TGFLGAGKTTLLNHILT 22 (158)
T ss_pred EECCCCCHHHHHHHHHh
Confidence 89999999999999998
No 439
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=75.90 E-value=5.9 Score=43.19 Aligned_cols=17 Identities=12% Similarity=-0.066 Sum_probs=14.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.||+|+|||+|.+.+.+
T Consensus 136 yG~~G~GKTHLl~ai~~ 152 (440)
T PRK14088 136 YGGVGLGKTHLLQSIGN 152 (440)
T ss_pred EcCCCCcHHHHHHHHHH
Confidence 99999999999885443
No 440
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=75.90 E-value=2.1 Score=39.98 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|+||||+..+|+.
T Consensus 5 ~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 5 VGPKNSGKTTLIERLVK 21 (155)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999997
No 441
>PRK15494 era GTPase Era; Provisional
Probab=75.90 E-value=2 Score=45.02 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=24.3
Q ss_pred CeE-EecCcCChHHHHHHHhcCCCCcee--eecCCCchh
Q psy6613 148 MII-ITRVTADISLAKRSLMSNPSKRAI--MERSNSRSS 183 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~~P~~F~~--sVshTTR~p 183 (510)
+++ +|.+|||||||.++|+. .+|.. .-+.|||..
T Consensus 54 kV~ivG~~nvGKSTLin~l~~--~k~~ivs~k~~tTr~~ 90 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIG--EKLSIVTPKVQTTRSI 90 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhC--CceeeccCCCCCccCc
Confidence 444 99999999999999997 22332 245677754
No 442
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=75.83 E-value=2.3 Score=38.99 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=16.8
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
++|+.|||||+|..++..
T Consensus 4 ivG~~~vGKTsli~~~~~ 21 (164)
T cd04162 4 VLGLDGAGKTSLLHSLSS 21 (164)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999999997
No 443
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=75.80 E-value=2 Score=40.49 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=17.0
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+|.||||+||||+.-.|+.
T Consensus 18 Li~G~sG~GKStlal~L~~ 36 (149)
T cd01918 18 LITGPSGIGKSELALELIK 36 (149)
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4599999999999998887
No 444
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.76 E-value=3 Score=39.88 Aligned_cols=18 Identities=22% Similarity=-0.014 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 32 l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 32 IEGPNGAGKTSLLRILAG 49 (204)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998887
No 445
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=75.67 E-value=2.4 Score=40.69 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 36 i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 446
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=75.65 E-value=7.3 Score=44.45 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=15.9
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||+|+.+.+.+
T Consensus 42 Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 42 IFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4599999999999887654
No 447
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=75.60 E-value=2.4 Score=41.09 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 32 ~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMG 48 (230)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999997776
No 448
>PRK10908 cell division protein FtsE; Provisional
Probab=75.57 E-value=2.5 Score=40.84 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 33 LTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 449
>PRK07667 uridine kinase; Provisional
Probab=75.54 E-value=2 Score=41.13 Aligned_cols=17 Identities=6% Similarity=-0.191 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.|++|+||||+.+.|..
T Consensus 23 ~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 23 DGLSRSGKTTFVANLKE 39 (193)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999998876
No 450
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=75.51 E-value=2.6 Score=41.19 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 33 ~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 33 IGPSGSGKSTLLRCINK 49 (240)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 451
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=75.45 E-value=2.5 Score=44.44 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.3
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+|+|||||.+.|..
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 4555 99999999999998887
No 452
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=75.45 E-value=2.7 Score=40.52 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||+|..+|..
T Consensus 6 ~G~~~sGKTsL~~~l~~ 22 (203)
T cd04105 6 LGPSDSGKTALFTKLTT 22 (203)
T ss_pred EcCCCCCHHHHHHHHhc
Confidence 99999999999999987
No 453
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.43 E-value=2.8 Score=39.98 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 32 l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 32 LKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998776
No 454
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.41 E-value=2.7 Score=41.35 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 34 i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 34 IVGPSGAGKSTLIKLINR 51 (241)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 455
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=75.38 E-value=1.8 Score=43.28 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=15.9
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||.|+||||+++.+-+
T Consensus 1 ViGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp -EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 479999999999999877
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=75.30 E-value=2.1 Score=37.61 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=16.0
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||++...++.
T Consensus 4 i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 4 VFGPTGSGKTTLALQLAL 21 (165)
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 489999999999988876
No 457
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=75.28 E-value=2.4 Score=39.88 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=17.9
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|.+|||||+|..+++.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~ 23 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAK 23 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 455 99999999999999987
No 458
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=75.20 E-value=2.2 Score=39.08 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
|++ +|+.|||||+|..+|..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~ 21 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQ 21 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999987
No 459
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=75.13 E-value=2.7 Score=42.25 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 44 ~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAG 60 (257)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999998876
No 460
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=75.08 E-value=2.6 Score=40.01 Aligned_cols=18 Identities=17% Similarity=-0.034 Sum_probs=16.5
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 31 IKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998887
No 461
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=75.01 E-value=2.3 Score=41.35 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 33 IVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 462
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=75.00 E-value=10 Score=38.89 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=48.1
Q ss_pred eEEecCcCChHHHHHHHhc----------CCCCceeeecCCCchhhhhhhcccHHHHHHHHH---------cCCeEEEEe
Q psy6613 149 IIITRVTADISLAKRSLMS----------NPSKRAIMERSNSRSSVLTEVQTEIERVYELAS---------TLQLVVLDC 209 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~----------~P~~F~~sVshTTR~pFe~~I~TslesI~~vi~---------sGKi~ILDI 209 (510)
++.||.|+||+++.+.+.+ ||+ |....+.. .-...++.|+++++ ..|+||+|-
T Consensus 30 Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D-~~~~~~~~-------~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 30 IIVGEDGIGKSLLAKEIALKILGKSQQREYVD-IIEFKPIN-------KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred EeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC-eEEecccc-------CCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 3499999999999987654 222 11111110 00145566666555 345676665
Q ss_pred -ccCCc--hhHhhhc--CCCc--eEEEEeCCCHHHHHHHHHhcC
Q psy6613 210 -DTINH--PSQLAKT--NLSP--CIVYLKISSPKVLQRLIKSRG 246 (510)
Q Consensus 210 -D~qg~--~lq~lks--~l~P--ivIFIkPPS~e~L~~rLr~Rg 246 (510)
|.-+. .-.++|+ +..+ ++||+. .+.+.|-..+++|+
T Consensus 102 ad~m~~~a~naLLK~LEepp~~t~~il~~-~~~~~ll~TI~SRc 144 (313)
T PRK05564 102 SEKMTEQAQNAFLKTIEEPPKGVFIILLC-ENLEQILDTIKSRC 144 (313)
T ss_pred hhhcCHHHHHHHHHHhcCCCCCeEEEEEe-CChHhCcHHHHhhc
Confidence 33220 1134455 3333 444444 56777777778776
No 463
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=74.97 E-value=2 Score=42.02 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=15.0
Q ss_pred EecCcCChHHHHHHHh
Q psy6613 151 ITRVTADISLAKRSLM 166 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL 166 (510)
+||+|+||||+.+.|.
T Consensus 31 vGpNGaGKSTll~~i~ 46 (212)
T cd03274 31 VGPNGSGKSNVIDSML 46 (212)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 9999999999999876
No 464
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=74.94 E-value=2.1 Score=37.19 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=15.7
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|.||+|+|||++.+.|.+
T Consensus 3 i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAK 20 (107)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 379999999999999765
No 465
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=74.90 E-value=2.5 Score=41.06 Aligned_cols=17 Identities=0% Similarity=-0.036 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 39 ~G~nGsGKSTLlk~l~G 55 (226)
T cd03234 39 LGSSGSGKTTLLDAISG 55 (226)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999997776
No 466
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=74.90 E-value=6 Score=43.14 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=16.4
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
.|+||.|+|||||.+.+.+
T Consensus 173 lIvgppGvGKTTLaK~Ian 191 (416)
T PRK09376 173 LIVAPPKAGKTVLLQNIAN 191 (416)
T ss_pred EEeCCCCCChhHHHHHHHH
Confidence 4499999999999988765
No 467
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.89 E-value=2.5 Score=42.86 Aligned_cols=17 Identities=12% Similarity=-0.093 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 43 ~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNG 59 (289)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999998876
No 468
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=74.86 E-value=1.9 Score=36.92 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=16.0
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+.|+||||+.+.|..
T Consensus 2 ~G~~gsGKstl~~~l~~ 18 (163)
T cd00880 2 FGRTNAGKSSLLNALLG 18 (163)
T ss_pred cCCCCCCHHHHHHHHhC
Confidence 79999999999999987
No 469
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=74.81 E-value=2.6 Score=41.57 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 34 i~G~nGsGKSTLl~~l~G 51 (253)
T TIGR02323 34 IVGESGSGKSTLLGCLAG 51 (253)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 470
>PF13173 AAA_14: AAA domain
Probab=74.81 E-value=2.3 Score=37.69 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=16.2
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.||.||||||+.+.+++
T Consensus 8 ~G~R~vGKTtll~~~~~ 24 (128)
T PF13173_consen 8 TGPRGVGKTTLLKQLAK 24 (128)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999987
No 471
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=74.77 E-value=2.4 Score=41.36 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 17 i~G~nGsGKSTLl~~l~G 34 (230)
T TIGR02770 17 LVGESGSGKSLTCLAILG 34 (230)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 472
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=74.77 E-value=2.9 Score=37.95 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=23.5
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
|+|+.++|||||++.|+..+ -+...+..||+.+
T Consensus 3 v~G~~ssGKSTliNaLlG~~-ilp~~~~~~T~~~ 35 (168)
T PF00350_consen 3 VVGQFSSGKSTLINALLGRP-ILPSGVGPCTAVP 35 (168)
T ss_dssp EEEBTTSSHHHHHHHHHTSS--SSSSSSSTTSSE
T ss_pred EEcCCCCCHHHHHHHHHhcc-cCcccccccccce
Confidence 48999999999999999732 2333444566655
No 473
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=74.76 E-value=2.7 Score=42.86 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=20.3
Q ss_pred CCeE--EecCcCChHHHHHHHhc--CCCCc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS--NPSKR 172 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~--~P~~F 172 (510)
++++ +||+|+|||++++.++. .++.|
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~ 62 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKY 62 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCcccc
Confidence 4555 99999999999998886 44443
No 474
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=74.71 E-value=8.8 Score=42.86 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=16.3
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
++.||.|+||||+.+.+.+
T Consensus 47 Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 47 LLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999988766
No 475
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=74.66 E-value=2.3 Score=44.14 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+||||+.+.|..
T Consensus 68 aG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 68 AGSVAVGKSTTARILQA 84 (290)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999987643
No 476
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.58 E-value=2.4 Score=40.28 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=15.7
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 39 ~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 39 MGESGAGKTTLLDVLAG 55 (192)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998875
No 477
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=74.57 E-value=2.9 Score=41.49 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 37 i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 37 IVGESGSGKTTLLNALSA 54 (258)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 478
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=74.57 E-value=2.7 Score=41.43 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 31 LIGPSGSGKSTILRILMT 48 (252)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 479
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=74.55 E-value=2.9 Score=37.63 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|+||||+.+.|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 444 99999999999999987
No 480
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=74.51 E-value=2.8 Score=40.98 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=15.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+.|..
T Consensus 17 ~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISG 33 (230)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998876
No 481
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=74.50 E-value=2.7 Score=44.33 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=17.6
Q ss_pred CCeE--EecCcCChHHHHHHHhc
Q psy6613 147 GMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 147 ~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
|.++ +||+|+|||||.+-|..
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 4454 99999999999998776
No 482
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=74.48 E-value=2.6 Score=37.34 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=16.2
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|||||||.++|..
T Consensus 6 ~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 6 AGHIDHGKTTLIKALTG 22 (164)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 89999999999999986
No 483
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=74.43 E-value=2.8 Score=41.00 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=15.8
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||+|+|||||.+-|..
T Consensus 35 ~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 35 LGPNGAGKTTTFYMVVG 51 (241)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999998776
No 484
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=74.39 E-value=2.5 Score=41.62 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 32 LIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998876
No 485
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=74.38 E-value=2.8 Score=42.09 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 38 l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 38 LVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998776
No 486
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=74.37 E-value=2.8 Score=41.87 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=18.3
Q ss_pred CCCeE--EecCcCChHHHHHHHhc
Q psy6613 146 PGMII--ITRVTADISLAKRSLMS 167 (510)
Q Consensus 146 ~~RpI--~GPsGvGKsTL~~rLL~ 167 (510)
.|.++ +||+|+|||||.+.|..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G 47 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAG 47 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 35554 99999999999998876
No 487
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=74.33 E-value=2.7 Score=40.50 Aligned_cols=17 Identities=6% Similarity=0.088 Sum_probs=16.3
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|+.|+||||+.++|+.
T Consensus 28 ~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 28 MSSPGSGKTTLIEKLID 44 (207)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999999987
No 488
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=74.33 E-value=2.2 Score=39.71 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=17.7
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.++|+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~ 22 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 344 99999999999999987
No 489
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=74.26 E-value=2.6 Score=39.22 Aligned_cols=18 Identities=22% Similarity=0.058 Sum_probs=16.4
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 32 i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 32 ITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998877
No 490
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=74.23 E-value=2.2 Score=40.70 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=16.4
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+|++|||||||.+.|+.
T Consensus 7 ~G~~g~GKSSLin~L~g 23 (197)
T cd04104 7 TGESGAGKSSFINALRG 23 (197)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999987
No 491
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=74.19 E-value=2.2 Score=38.80 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=17.6
Q ss_pred CeE-EecCcCChHHHHHHHhc
Q psy6613 148 MII-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 148 RpI-~GPsGvGKsTL~~rLL~ 167 (510)
+++ +|++|||||+|.+++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 344 99999999999999986
No 492
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=74.11 E-value=2.9 Score=38.76 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=16.3
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 31 l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 31 LLGENGAGKSTLMKILSG 48 (163)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 499999999999998876
No 493
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=74.08 E-value=2.5 Score=39.78 Aligned_cols=19 Identities=5% Similarity=-0.087 Sum_probs=17.2
Q ss_pred eE-EecCcCChHHHHHHHhc
Q psy6613 149 II-ITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI-~GPsGvGKsTL~~rLL~ 167 (510)
++ +|.+|||||+|..+++.
T Consensus 3 i~vlG~~~vGKTsLi~~~~~ 22 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVE 22 (182)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 44 99999999999999987
No 494
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=74.08 E-value=2.9 Score=44.45 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=26.0
Q ss_pred EEecCcCChHHHHHHHhcCCCCceeeecCCCchh
Q psy6613 150 IITRVTADISLAKRSLMSNPSKRAIMERSNSRSS 183 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~~P~~F~~sVshTTR~p 183 (510)
|+|.+|||||||.++|+.....+....+.+||..
T Consensus 4 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~ 37 (429)
T TIGR03594 4 IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDR 37 (429)
T ss_pred EECCCCCCHHHHHHHHhCCCcceecCCCCcccCc
Confidence 3999999999999999983333444566788865
No 495
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=74.03 E-value=2.6 Score=41.01 Aligned_cols=18 Identities=17% Similarity=-0.005 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+-|..
T Consensus 38 i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 38 ITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998776
No 496
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=73.99 E-value=9.6 Score=44.16 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=15.7
Q ss_pred eEEecCcCChHHHHHHHhc
Q psy6613 149 IIITRVTADISLAKRSLMS 167 (510)
Q Consensus 149 pI~GPsGvGKsTL~~rLL~ 167 (510)
+++||+|+|||++.+.|..
T Consensus 207 lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 207 LLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3499999999999887654
No 497
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=73.97 E-value=2.6 Score=41.28 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=16.2
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 33 i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 33 LLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 399999999999998876
No 498
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=73.94 E-value=2.6 Score=41.41 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=16.1
Q ss_pred EEecCcCChHHHHHHHhc
Q psy6613 150 IITRVTADISLAKRSLMS 167 (510)
Q Consensus 150 I~GPsGvGKsTL~~rLL~ 167 (510)
|+||+|+|||||.+.|..
T Consensus 34 i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINL 51 (250)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 399999999999998776
No 499
>PRK08727 hypothetical protein; Validated
Probab=73.94 E-value=9.4 Score=37.72 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=14.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
.||+|+|||+|...+..
T Consensus 47 ~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 47 SGPAGTGKTHLALALCA 63 (233)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 99999999999988643
No 500
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=73.92 E-value=2.4 Score=41.19 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=14.9
Q ss_pred EecCcCChHHHHHHHhc
Q psy6613 151 ITRVTADISLAKRSLMS 167 (510)
Q Consensus 151 ~GPsGvGKsTL~~rLL~ 167 (510)
+||.||||||..-+|-.
T Consensus 7 vGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCchHhHHHHHHH
Confidence 99999999998877764
Done!