RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6613
(510 letters)
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 284 bits (727), Expect = 2e-92
Identities = 202/337 (59%), Positives = 243/337 (72%), Gaps = 40/337 (11%)
Query: 11 SQPS-SDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
S+PS SD+SL+E++E +RRE ERQA +QLEKA+ K VAFAVRTNV Y + +DD PV G
Sbjct: 1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60
Query: 70 AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSK 129
A+SF+ +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ Q SK
Sbjct: 61 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 120
Query: 130 TSSTSNLGALSSDAPSPGM-------------------------------------IIIT 152
P + I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299
Query: 273 VILDENQLEDACEHIAEYLEAYWRATHPPA-APPQPL 308
VILDENQLEDACEH+A+YLEAYW+ATHPP+ P PL
Sbjct: 300 VILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 336
Score = 105 bits (263), Expect = 2e-25
Identities = 94/131 (71%), Positives = 108/131 (82%), Gaps = 1/131 (0%)
Query: 375 ESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMM 434
E++ + +KEK+ FFKK E T PYDVVPSMRPVVLVGPSLKGYEVTDMM
Sbjct: 102 ENMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMM 161
Query: 435 QKALFDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIE 494
QKALFDFLKHRFEGRI ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIE
Sbjct: 162 QKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIE 220
Query: 495 RVYELASTLQV 505
R++ELA TLQ+
Sbjct: 221 RIFELARTLQL 231
Score = 40.6 bits (94), Expect = 9e-04
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 338 SQPS-SDLSLDEEKETLRREKERQALSQLEKARVTDD 373
S+PS SD+SL+E++E +RRE ERQA +QLEKA+
Sbjct: 1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPV 37
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 93.3 bits (231), Expect = 3e-21
Identities = 41/293 (13%), Positives = 91/293 (31%), Gaps = 57/293 (19%)
Query: 48 FAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHI---------KEKYDSNWWIGRLVKEG 98
F +RT+ + + S + F + H+ + W+ +
Sbjct: 5 FYIRTHFELEPSPPSG-------LGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRD 57
Query: 99 S---ECGFIPSPVKLENLRLQQTQARNPKL---------------------YSSKTSSTS 134
E G IP+ + E L + R + +K ++
Sbjct: 58 LREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQR 117
Query: 135 NLGALSSDAPSPGMIIITRVTADISLAKRSL-MSNPSKRAIMER-------------SNS 180
+ LS+ RV + KR + + P M++ + S
Sbjct: 118 SREDLSALTRQGRYPPYERVVLREASFKRPVVILGPVADIAMQKLTAEMPDQFEIAETVS 177
Query: 181 RSSVLTEVQTEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQR 240
R+ +++ +++ V +A + +LD + +L P +V+ S L+
Sbjct: 178 RTDSPSKII-KLDTVRVIAEKDKHALLDVT-PSAIERLNYVQYYPIVVFFIPESRPALKA 235
Query: 241 LIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQ-LEDACEHIAEYLE 292
L + + R A+KL + +F + N + + + +
Sbjct: 236 LRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIR 288
Score = 28.6 bits (63), Expect = 4.5
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 399 FFKKQETTTPYDVV-----PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIIT 453
+Q PY+ V RPVV++GP MQK + +FE ++
Sbjct: 124 ALTRQGRYPPYERVVLREASFKRPVVILGPVADI-----AMQKLTAEM-PDQFEIAETVS 177
Query: 454 RVT 456
R
Sbjct: 178 RTD 180
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 66.3 bits (162), Expect = 3e-12
Identities = 59/291 (20%), Positives = 96/291 (32%), Gaps = 52/291 (17%)
Query: 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GF 103
F +R YD + D +SF + LH+ + D WW R V SE GF
Sbjct: 1 GFYIRALFDYDKTKDCGFLSQA--LSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 58
Query: 104 IPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALS------SDAPSPGMIIITRVTAD 157
IPS ++E + +A++ SS S LS + III T D
Sbjct: 59 IPSKRRVERREWSRLKAKDW--GSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKD 116
Query: 158 ISLAKRSLMSNP---------------------------SKRAIMERSNSRSSVL--TEV 188
L P S R ME+ + +
Sbjct: 117 -RANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQY 175
Query: 189 Q-----TEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIK 243
T ++ V E+A + +LD N +L +L P ++++ S + + +
Sbjct: 176 NSHLYGTSVQSVREVAEQGKHCILDVS-ANAVRRLQAAHLHPIAIFIRPRSLENVLEI-- 232
Query: 244 SRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAY 294
+ A KL Q E F I++ + E+ + +E
Sbjct: 233 -NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDL 282
>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A;
Ca2+ channel, BETA4A subunit, nuclear magnetic
resonance, alternative spliving; NMR {Homo sapiens}
Length = 61
Score = 58.0 bits (139), Expect = 3e-11
Identities = 23/42 (54%), Positives = 36/42 (85%), Gaps = 1/42 (2%)
Query: 4 GSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKARAK 44
GSA+S S+PS SD+SL+E++E +R+E+E+QA QLE+A++K
Sbjct: 19 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSK 60
Score = 56.8 bits (136), Expect = 8e-11
Identities = 22/43 (51%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 328 PSMGSAESNFSQPS-SDLSLDEEKETLRREKERQALSQLEKAR 369
GSA+S S+PS SD+SL+E++E +R+E+E+QA QLE+A+
Sbjct: 16 SEAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAK 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 9e-11
Identities = 86/504 (17%), Positives = 145/504 (28%), Gaps = 183/504 (36%)
Query: 4 GSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDD 63
GS E P++ SQL++ F +G DD
Sbjct: 14 GSLEHVLLVPTASFF---------------IASQLQEQ------FNKILPEPTEGFAADD 52
Query: 64 ---SPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQA 120
+P +FL ++ LV+ F + L L T+
Sbjct: 53 EPTTPAELVG------KFLG---------YVSSLVEPSKVGQF------DQVLNLCLTEF 91
Query: 121 RNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADIS--LAKRSLMSNPSKRAIMERS 178
N L +++ AL++ + + I + R + P +
Sbjct: 92 ENCYL------EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK----- 140
Query: 179 NSRSSVLTEVQTEIERVY--------------EL------------------ASTLQ-LV 205
S S++ V ++ EL A TL L+
Sbjct: 141 -SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 206 VLDCDTINHPSQ-------LAKTNLSPCIVYLK---ISSPKVLQRLIKSRGKSQTRHLNV 255
D +Q L + +P YL IS P LI G Q H
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-----LI---GVIQLAHY-- 249
Query: 256 QMVAAEKLAQCPQEMFD----------------VILDENQLEDACEHIAEYLE-AYW--- 295
+V A+ L P E+ I + + E + + + ++
Sbjct: 250 -VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 296 RATHPPAAPPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSL-DEEKETLR 354
R A P L PPS S E+N PS LS+ + +E ++
Sbjct: 309 RCYE--AYPNTSL----------------PPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 355 R--EKERQALSQLEKARVTDDNESIGNSR-----AG--------KNTL---TTPTTKEKK 396
K L ++ + S+ N +G TL P+ ++
Sbjct: 351 DYVNKTNSHLPAGKQVEI-----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 397 KIFFKKQETTTPYDVVPSMR--PV 418
+I F +++ + S R PV
Sbjct: 406 RIPFSERK------LKFSNRFLPV 423
Score = 45.4 bits (107), Expect = 4e-05
Identities = 46/247 (18%), Positives = 66/247 (26%), Gaps = 103/247 (41%)
Query: 302 AAPPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSLDEEKETLRREKERQA 361
A +PLTL +H GS E P++
Sbjct: 3 AYSTRPLTL-------SH-----------GSLEHVLLVPTASFF---------------I 29
Query: 362 LSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLV 421
SQL + + L PT F E TTP + LV
Sbjct: 30 ASQL-QEQFNK-------------ILPEPTEG-----FAADDEPTTPAE---------LV 61
Query: 422 GPSLKGY---EVTDMMQKALFDFLKH---RFEGRIIITRVTADI-SLAKRSLMSNPSK-- 472
G L GY V L FE + DI +LA + L N +
Sbjct: 62 GKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN---DIHALAAKLLQENDTTLV 117
Query: 473 ------------RAIMERSNSR---SSVLTEVQTEIERVY--------------ELASTL 503
R + +R + S++ V ++ EL
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 504 QVYYPLI 510
Q Y+ L+
Sbjct: 178 QTYHVLV 184
Score = 39.3 bits (91), Expect = 0.004
Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 71/202 (35%)
Query: 156 ADISLAKR---SLM----SNPSKRAIME--------RSNSRSSVLTEVQTEIERVYELAS 200
AD S++ +NP I R N + + + + ++
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 201 TLQLVVLDCDTINHP-SQLAKT-NLSPCIVYLKISSPKVLQ------------------- 239
+ T L+ T P + ++ ++ + L+
Sbjct: 1709 EINEHSTSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 240 ----------------RLIKSRGKS--------QTRHLNVQMVAAEKLAQCPQEMFDVIL 275
++ RG + + N M+A P +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-----PGRV-AASF 1821
Query: 276 DENQLEDACEHIA----EYLEA 293
+ L+ E + +E
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEI 1843
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 57.5 bits (139), Expect = 3e-09
Identities = 50/285 (17%), Positives = 91/285 (31%), Gaps = 57/285 (20%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GFIPS 106
VR YD + DD P G + F + LH+ D WW R V +E G +P
Sbjct: 8 VRALFDYDPNRDDGLPSRG--LPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVP- 64
Query: 107 PVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPS-PGMIIITRVTADISLAKRSL 165
+ R + + R + + A+ + + +II D + +
Sbjct: 65 -----SKRRWERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKD-RINDDLI 118
Query: 166 MSNP---------------------------SKRAIMERSNSRSSVL--TEVQ-----TE 191
P S R MER + + T
Sbjct: 119 SEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178
Query: 192 IERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTR 251
+ V E+A + +LD N +L L P V++K S + + + + Q +
Sbjct: 179 VASVREVAEKGKHCILDVS-GNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAK 237
Query: 252 HLNVQMVAAEKLAQCPQEM---FDVILDENQLEDACEHIAEYLEA 293
+ + E QE F ++ + +E+ + + +
Sbjct: 238 KTYERAIKME------QEFGEYFTGVVQGDTIEEIYSKVKSMIWS 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 3e-09
Identities = 76/545 (13%), Positives = 142/545 (26%), Gaps = 178/545 (32%)
Query: 5 SAESNFSQPSSDLSLDEE-------------KETLRREKE----RQALSQLEKARA---- 43
E QPS + E K + R + RQAL +L A+
Sbjct: 99 KTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 44 ------KNV--AFAVRTNVKYDGSIDDDSPVHGYAVSF----DIHEFLHIKEKYDSNWWI 91
K + + ++ L + +K
Sbjct: 157 GVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY---- 207
Query: 92 GRLVKEGSECGFIPSPVKL------ENLRLQQTQARNPK-------LYSSKTSSTSNLGA 138
++ + S +KL LR + ++K + NL
Sbjct: 208 -QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 139 LSSDAPSPGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYEL 198
I++T T + L + + ++ S LT + +
Sbjct: 267 ---------KILLT--TRFKQVT-DFLSAATTTHISLD---HHSMTLTPDEVK------- 304
Query: 199 ASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHL-NVQM 257
+L L LDC + P ++ TN P ++S +I + N +
Sbjct: 305 --SLLLKYLDCRPQDLPREVLTTN--P----RRLS-------IIAESIRDGLATWDNWKH 349
Query: 258 VAAEKL---------AQCP---QEMFD--VILDENQLEDACEHI-AEYLEAYWRATHPPA 302
V +KL P ++MFD + + HI L W +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS------AHIPTILLSLIWFDV-IKS 402
Query: 303 APPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSLDEEKETL-RREKERQA 361
+ L L Q ES S P + L+ + + R
Sbjct: 403 DVMVVVNKLHKYSLVEKQP-----------KESTISIP--SIYLELKVKLENEYALHRSI 449
Query: 362 LSQLEKARVTDDNESIGNSRAG----------KNTLTTPTTKEKKKIFF-------KKQE 404
+ + D ++ I KN + +F K +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 405 TTTPYDVVPSMRPVVL-----------------------------VGPSLKGYEVTDMMQ 435
+T ++ S+ + + +L + TD+++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 436 KALFD 440
AL
Sbjct: 570 IALMA 574
Score = 47.9 bits (113), Expect = 6e-06
Identities = 64/450 (14%), Positives = 122/450 (27%), Gaps = 167/450 (37%)
Query: 7 ESNFSQPSS-----DLSLDEEKETLRR----EKERQAL--------SQLEKA-------- 41
+ N++ S L + + LRR + L ++ A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 42 ---RAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEG 98
R K V + S+D S + E + K ++
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSM------TLTPDEVKSLLLK-----YLD------ 312
Query: 99 SECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADI 158
+ ++L ++ NP+ S + D + T D
Sbjct: 313 ---------CRPQDLP-REVLTTNPRRLSI-------IAESIRDGLA---------TWD- 345
Query: 159 SLAKRSLMSNPSK-RAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDT-INHPS 216
N K I+E S +VL E ++++ +L V I P+
Sbjct: 346 ----NWKHVNCDKLTTIIESS---LNVLEP--AEYRKMFD-----RLSVFPPSAHI--PT 389
Query: 217 QLAKTNLSPCIVYLKISSPKV------LQR--LIKSRGKSQTRHL-NVQMVAAEKLAQCP 267
L L +++ + V L + L++ + K T + ++ + E +
Sbjct: 390 IL----L--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL---ELKVKLE 440
Query: 268 QE--MFDVILDENQLEDA---------------CEHI---------AE--------YLEA 293
E + I+D + HI E +L+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 294 YW-----RATHPPAAPPQPL--TLLPPRQLTAHQSVVIPPSPS------------MGSAE 334
+ R + TL QL ++ + P E
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 335 SNFSQPSSDL---SLDEEKETLRREKERQA 361
+ +DL +L E E + E +Q
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 53.4 bits (127), Expect = 1e-07
Identities = 47/283 (16%), Positives = 88/283 (31%), Gaps = 46/283 (16%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSE---CGFIPS 106
+R YD + D + F + LH+ + D WW R V SE GFIPS
Sbjct: 430 IRALFDYDKTKDCGFLSQALSFRFG--DVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 487
Query: 107 PVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGMIIITRVTADIS---LAKR 163
++E + +A++ S ++ + + + +
Sbjct: 488 KRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGPTKDRANDD 547
Query: 164 SLMSNPSKRAIMERSNSRSSVLTEVQ---------------------------------- 189
L P K +R E+
Sbjct: 548 LLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG 607
Query: 190 TEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQ 249
T ++ V E+A + +LD N +L +L P ++++ S + + + +
Sbjct: 608 TSVQSVREVAEQGKHCILDVS-ANAVRRLQAAHLHPIAIFIRPRSLENVLEI---NKRIT 663
Query: 250 TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLE 292
A KL Q E F I++ + E+ + +E
Sbjct: 664 EEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIE 706
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHI-KEKYDSNWWIGRLVKEGSECGFIPS 106
+ D+ ++ + ++I +K +WW+ +LV G G +P+
Sbjct: 11 FMAESQDE-------LTIKSGDKVYILDDKKSKDWWMCQLVDSGKS-GLVPA 54
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 38.4 bits (90), Expect = 2e-04
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ GS + + ++I + S W +G+L+ E G++P+
Sbjct: 9 FPGSGSPSE------LPLKKGDVIYITREEPSGWSLGKLLDGSKE-GWVPT 52
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 37.6 bits (88), Expect = 4e-04
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
YD + D++ ++F ++ + E D +WW+G L K+GS+ G PS
Sbjct: 9 YDAAEDNE-------LTFVENDKIINIEFVDDDWWLGELEKDGSK-GLFPS 51
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 37.7 bits (88), Expect = 5e-04
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ +DD +SF E I + +WW R + G G+IPS
Sbjct: 24 YEAITEDD-------LSFHKGEKFQILNSSEGDWWEARSLTTGET-GYIPS 66
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 37.7 bits (88), Expect = 6e-04
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ +DD +SF E I + +WW R + G G+IPS
Sbjct: 14 YEARTEDD-------LSFHKGEKFQILNSSEGDWWEARSLTTGET-GYIPS 56
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107
++G+ ++D + F + L I++K + WW + G G IP P
Sbjct: 10 FNGNDEED-------LPFKKGDILRIRDKPEEQWWNAEDSE-GKR-GMIPVP 52
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 37.8 bits (88), Expect = 7e-04
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ + D +SF E I E +WW R + G G+IPS
Sbjct: 15 YNATRWTD-------LSFHKGEKFQILEFGPGDWWEARSLTTGET-GYIPS 57
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + D + + + I EK D +WW R K GSE G+IPS
Sbjct: 11 FQATEAHD-------LRLERGQEYIILEKNDLHWWRARD-KYGSE-GYIPS 52
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ D ++F E L + EK WWI + K G+E G +P
Sbjct: 19 FTAQQVGD-------LTFKKGEILLVIEKKPDGWWIAKDAK-GNE-GLVPR 60
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 36.1 bits (84), Expect = 0.002
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ GS + + + I S W + +L+ E G++P+
Sbjct: 11 FPGSGSSSE------LPLKKGDIVFISRDEPSGWSLAKLLDGSKE-GWVPT 54
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 36.1 bits (84), Expect = 0.002
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y +D + + I E+ + WW R K G E G+IPS
Sbjct: 17 YMPMNAND-------LQLRKGDEYFILEESNLPWWRARD-KNGQE-GYIPS 58
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 35.7 bits (83), Expect = 0.002
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++G+ ++D + F + L I++K + WW + G G IP
Sbjct: 12 FNGNDEED-------LPFKKGDILRIRDKPEEQWWNAEDSE-GKR-GMIPV 53
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 35.7 bits (83), Expect = 0.002
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC--G 102
V F V Y +DD ++F+ + + + D+ W+ G + G
Sbjct: 5 EVPFKVVAQFPYKSDYEDD-------LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 57
Query: 103 FIPS 106
P
Sbjct: 58 IFPK 61
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 35.7 bits (83), Expect = 0.002
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHI-KEKYDSNWWIGRLVKEGSECGFIPS 106
+ D+ ++ + ++I +K +WW+ +LV G G +P+
Sbjct: 15 FMAESQDE-------LTIKSGDKVYILDDKKSKDWWMCQLVDSGKS-GLVPA 58
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 38.4 bits (89), Expect = 0.002
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS-PVKLENLR 114
Y D+ VS E + + K WW+ R G+ PS ++
Sbjct: 90 YTAVEGDE-------VSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYLQKSGQD 139
Query: 115 LQQTQARNPKLYSSKTSSTSNLGALSSDAPSP 146
+ Q Q + + + SS N ++ +
Sbjct: 140 VSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKR 171
Score = 31.1 bits (70), Expect = 0.49
Identities = 9/70 (12%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKLENLR 114
Y+ + + ++ + + + EK +S WW ++ ++ G+IP+ ++ +
Sbjct: 20 YEKTSGSE-------MALSTGDVVEVVEKSESGWWFCQM---KAKRGWIPASFLEPLDSP 69
Query: 115 LQQTQARNPK 124
+
Sbjct: 70 DETEDPEPNY 79
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 36.5 bits (84), Expect = 0.004
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 54 VKYD--GSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKL 110
Y+ DD+ + E L I YD W+I + + G +P V++
Sbjct: 8 TLYEFKAERDDE-------LDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRI 60
Query: 111 ENLRLQQTQARNPKLYSSKTSSTSNLGAL 139
+L A + + +
Sbjct: 61 IDLMDPAKYASVDTYDREQVMKIIDEFKI 89
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 34.9 bits (81), Expect = 0.005
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++G + +SF E + + + D NW+ GR+ + G P
Sbjct: 16 FNGDTQVE-------MSFRKGERITLLRQVDENWYEGRIPGTSRQ-GIFPI 58
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 37.1 bits (85), Expect = 0.006
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 43 AKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECG 102
K + V K+ G + D + F+ E L I K + +WW R G+ G
Sbjct: 114 KKPIIEVVVGTFKFTGERETD-------LPFEQGERLEILSKTNQDWWEAR-NALGTT-G 164
Query: 103 FIPSP-VKLE 111
+P+ V+++
Sbjct: 165 LVPANYVQIQ 174
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 34.3 bits (79), Expect = 0.007
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
VR + Y D D +SF + + + + W ++ E G I
Sbjct: 8 VRAILPYTKVPDTDE------ISFLKGDMFIVHNELEDGWMWVTNLRTD-EQGLIVE 57
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 34.2 bits (79), Expect = 0.007
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ S D D + F+ E L I E+ WW + + G E GFIP
Sbjct: 15 YEPSHDGD-------LGFEKGEQLRILEQSG-EWWKAQSLTTGQE-GFIPF 56
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 34.7 bits (80), Expect = 0.008
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPS 106
+ + ++F + + I E + +W+ + G E G + +
Sbjct: 26 HTRPKPGE-------LAFRKGDVVTILEACENKSWYRVKHHTSGQE-GLLAA 69
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 34.3 bits (79), Expect = 0.009
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC--GFIPS 106
+ D++ +SF + H+ K + WW L + G G++P
Sbjct: 19 FKSRTDEE-------LSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 34.3 bits (79), Expect = 0.010
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC------GFIPS 106
Y +D +SF + L + + WW+ R +++ G+IPS
Sbjct: 16 YQARTAED-------LSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 37.1 bits (85), Expect = 0.011
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKLENLR 114
+ G + D + F+ E L I K + +WW R G +P+ V+++
Sbjct: 156 FTGERETD-------LPFEQGERLEILSKTNQDWWEARNAL--GTTGLVPANYVQIQMEF 206
Query: 115 LQQTQARNPKLYSSKTSSTSNLGALSSDAPSPGM 148
++ S +S S+ S +
Sbjct: 207 HNDRTSKGASQSSIGSSGGGAERFSSASTSSDNI 240
Score = 30.2 bits (67), Expect = 1.7
Identities = 5/62 (8%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 45 NVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFI 104
+ + + D + + + + + +K + + L + G +
Sbjct: 245 RLPAKAKVTFDRVPNAYDPT-----QLRVKKGQTVLVTQKMSNGMYKAEL---DGQIGSV 296
Query: 105 PS 106
P
Sbjct: 297 PH 298
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 33.9 bits (78), Expect = 0.011
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + D+ ++ + + + K + +WW G + K G E G+ P+
Sbjct: 15 YTANRSDE-------LTIHRGDIIRVFFKDNEDWWYGSIGK-GQE-GYFPA 56
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 33.8 bits (78), Expect = 0.013
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y D+ ++F +H K WW G + PS
Sbjct: 16 YKAKRSDE-------LTFCRGALIHNVSKEPGGWWKGDY--GTRIQQYFPS 57
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 33.9 bits (78), Expect = 0.014
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + + ++ +E + + + +WW + + G E G++PS
Sbjct: 28 YQTNDPQE-------LALRRNEEYCLLDSSEIHWWRVQD-RNGHE-GYVPS 69
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 33.5 bits (77), Expect = 0.014
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC-----GFIPS 106
Y + V+ + L + + +WW + + GF+P+
Sbjct: 10 YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPA 58
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 33.4 bits (77), Expect = 0.015
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS--NWWIGRLVKEGSECGFIPS 106
+ +++ ++F+ E + + EK ++ WW + + G G +P
Sbjct: 15 FSSVTEEE-------LNFEKGETMEVIEKPENDPEWWKCKNAR-GQV-GLVPK 58
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 33.4 bits (77), Expect = 0.016
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
VR + Y D D +SF + + + + W ++ E G I
Sbjct: 10 VRAILPYTKVPDTDE------ISFLKGDMFIVHNELEDGWMWVTNLRTD-EQGLIVE 59
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 36.0 bits (82), Expect = 0.017
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP--VKLENLRLQQTQARNPKLYSSK 129
F + L I++K + WW + + G IP P K
Sbjct: 154 PFKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPVPYVEKYRPASAS------VSALIGG 205
Query: 130 TSSTSNLGALSSDAPSP 146
S+ L P P
Sbjct: 206 NQEGSHPQPLGGPEPGP 222
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 33.5 bits (77), Expect = 0.017
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + + ++ E ++ + + +WW + K G E G+ PS
Sbjct: 29 YQTNDPQE-------LALRCDEEYYLLDSSEIHWWRVQD-KNGHE-GYAPS 70
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 32.9 bits (76), Expect = 0.018
Identities = 5/36 (13%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 71 VSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + + I K+ W + + G +P
Sbjct: 18 LRLAEGDIVFISYKHGQGWLVAENESGS-KTGLVPE 52
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 33.0 bits (76), Expect = 0.022
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++G + +SF E + + + D NW+ GR+ + G P
Sbjct: 15 FNGDTQVE-------MSFRKGERITLLRQVDENWYEGRIPGTSRQ-GIFPI 57
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 34.0 bits (78), Expect = 0.023
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 54 VKYD--GSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V YD D+ ++ + E L I ++ W+I + + G +P
Sbjct: 10 VLYDFKAEKADE-------LTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPV 57
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 33.1 bits (76), Expect = 0.026
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
DD+ ++F E + + + D WWIG + + G P
Sbjct: 19 CQADNDDE-------LTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 33.2 bits (76), Expect = 0.027
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ G ++ + +SF E + + K + NW+ GR+ G + G P+
Sbjct: 26 FKGDLEVE-------LSFRKGEHICLIRKVNENWYEGRITGTGRQ-GIFPA 68
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 32.6 bits (75), Expect = 0.027
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
YDG DD +SF E + + E+ WW + + E GFIPS
Sbjct: 16 YDGIHPDD-------LSFKKGEKMKVLEE-HGEWWKAKSLLTKKE-GFIPS 57
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 32.6 bits (75), Expect = 0.028
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y ++ + E + + KY W G + G G PS
Sbjct: 16 YSAHRPEE-------LDLQKGEGIRVLGKYQDGWLKGLSLLTG-RTGIFPS 58
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 32.7 bits (75), Expect = 0.030
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y D+ + F+ + + K WW R G E G+ P+
Sbjct: 17 YTSQSKDE-------IGFEKGVTVEVIRKNLEGWWYIRY--LGKE-GWAPA 57
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 32.8 bits (75), Expect = 0.031
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y D + +SF + + EK +S WW R G G+ PS
Sbjct: 17 YQKVQDSE-------ISFPAGVEVQVLEKQESGWWYVRF---GELEGWAPS 57
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 32.6 bits (75), Expect = 0.032
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + + +SF E + I + ++WW G CG+IP+
Sbjct: 16 YAATDETQ-------LSFLRGEKILILRQTTADWWWGER---AGCCGYIPA 56
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.032
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 11 SQPSSDLSLDEEKETLR--REKERQALSQLEKARAK 44
+Q L +E E++R RE++R+ L +L+ A
Sbjct: 75 AQADR---LTQEPESIRKWREEQRKRLQELDAASKV 107
Score = 33.6 bits (76), Expect = 0.087
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 338 SQPSSDLSLDEEKETLR--REKERQALSQL------------EKARVTDDNESIGNSRAG 383
+Q L +E E++R RE++R+ L +L EKA+ D E ++
Sbjct: 75 AQADR---LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK--KDLEEWNQRQSE 129
Query: 384 KNTLTTPTTKEKKKIFFKKQETTT 407
+ + K F+++ +
Sbjct: 130 QVEKNKINNRIADKAFYQQPDADI 153
Score = 28.2 bits (62), Expect = 5.4
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 20 DEEKETLRREKE---RQALSQLEKARAKN 45
E +E +++ E ++ Q+EK + N
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINN 138
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 32.1 bits (74), Expect = 0.033
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
YD D+ ++F + + + +K + WW G L + G++P+
Sbjct: 12 YDAQTGDE-------LTFKEGDTIIVHQKDPAGWWEGEL---NGKRGWVPA 52
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 33.6 bits (77), Expect = 0.033
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ +D +SF E I + +WW R + G G+IPS
Sbjct: 36 YEARTTED-------LSFKKGERFQIINNTEGDWWEARSIATGKS-GYIPS 78
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 32.3 bits (74), Expect = 0.038
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + V+ + L + + +WW + GF+P+
Sbjct: 14 YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 54
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 32.2 bits (74), Expect = 0.041
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + ++ + L + + +WW + G + GF+P+
Sbjct: 15 YQEKSPRE-------LTVKKGDILTLLNSTNKDWWKIEV--NGRQ-GFVPA 55
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 32.2 bits (74), Expect = 0.041
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 71 VSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + + + ++ D W++G + + G P
Sbjct: 24 LELREGDRVDVMQQCDDGWFVGVSRRTQ-KFGTFPG 58
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 31.8 bits (73), Expect = 0.051
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPS 106
+ G+ + D + F + L I D NW+ + K G E G IP+
Sbjct: 20 FHGTAEQD-------LPFCKGDVLTIVAVTKDPNWYKAKN-KVGRE-GIIPA 62
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 32.4 bits (74), Expect = 0.056
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y DD +SF + + + E+ WW R + E G+IPS
Sbjct: 12 YVSWSPDD-------LSFQKGDQMVVLEE-SGEWWKARSLATRKE-GYIPS 53
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 32.4 bits (74), Expect = 0.057
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ +D +SF + + + E+ WW R + E G+IPS
Sbjct: 34 YEAIHHED-------LSFQKGDQMVVLEE-SGEWWKARSLATRKE-GYIPS 75
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 32.0 bits (73), Expect = 0.062
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + V+ + L + + +WW + + GF+P+
Sbjct: 11 YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEV--NDRQ-GFVPA 51
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 31.6 bits (72), Expect = 0.077
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y F E L + + WW + G E +IP
Sbjct: 26 YPSPDISP-------PIFRRGEKLRVISD-EGGWWKAISLSTGRE-SYIPG 67
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 31.0 bits (71), Expect = 0.078
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ D+ + F+ + ++I + D+NWW G G IPS
Sbjct: 12 FEPRTPDE-------LYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPS 52
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 32.1 bits (73), Expect = 0.081
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 36 SQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS--NWWIGR 93
S L + V V+T + +++ ++F+ E + + EK ++ WW +
Sbjct: 6 SGLSNGQGSRVLHVVQTLYPFSSVTEEE-------LNFEKGETMEVIEKPENDPEWWKCK 58
Query: 94 LVKEGSECGFIPSP--VKLENLRLQQTQARNP 123
+ G G +P V L + P
Sbjct: 59 NAR-GQV-GLVPKNYVVVLSDGPALHPAHSGP 88
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 33.9 bits (77), Expect = 0.083
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
F +F+H+ + D NWW G G G P
Sbjct: 176 GFRRGDFIHVMDNSDPNWWKGAC--HGQT-GMFPR 207
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 31.7 bits (72), Expect = 0.085
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 54 VKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC-GFIPS 106
D D+++ F + + E+ + WW +++ G++PS
Sbjct: 15 SIADYEGDEET------AGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPS 62
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 31.0 bits (71), Expect = 0.094
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y G + +SF L + + +WW GR G + G +P
Sbjct: 15 YVGRSARE-------LSFKKGASLLLYHRASEDWWEGRH--NGID-GLVPH 55
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 33.8 bits (76), Expect = 0.095
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKLENLRLQQTQARNPKLYSSKT 130
F E L I EK + WW R + G IP P V+ + N S
Sbjct: 143 PFKKGEILVIIEKPEEQWWSARN--KDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGI 200
Query: 131 SSTSNLGALSSDAPSP 146
++ A
Sbjct: 201 PEPAHAYAQPQTTTPL 216
Score = 32.7 bits (73), Expect = 0.23
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ ++ + + + + W G + G P
Sbjct: 257 ALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPF 288
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 31.1 bits (70), Expect = 0.098
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 81 IKEKYDSNWWIGRLVKEGSECGFIPS 106
K + + NWW GR E G+ P
Sbjct: 38 TKAEAEHNWWEGRNTATN-EVGWFPC 62
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 31.1 bits (71), Expect = 0.12
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + I K+ W + + G +P
Sbjct: 23 RLAEGDIVFISYKHGQGWLVAENESGS-KTGLVPE 56
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 31.1 bits (70), Expect = 0.13
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 81 IKEKYDSNWWIGRLVKEGSECGFIPS 106
K + + NWW GR E G+ P
Sbjct: 46 TKAEAEHNWWEGRNTATN-EVGWFPC 70
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.13
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 27/70 (38%)
Query: 243 KSRGKSQTRHLNVQMVAAEKLAQCP---QEMFDVILDENQLEDAC--------EHI---- 287
R + +LN+ + CP ++ ++ + C + +
Sbjct: 8 DKRAGRRGPNLNIVLT-------CPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
Query: 288 AEYLEAYWRA 297
+E WR
Sbjct: 61 SE-----WRT 65
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 30.7 bits (70), Expect = 0.14
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y G + +SF L + ++ +WW GR G IP
Sbjct: 18 YVGRTARE-------LSFKKGASLLLYQRASDDWWEGRH---NGIDGLIPH 58
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 30.7 bits (70), Expect = 0.14
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++GS + +S E L + E+ + W KEG E G++P+
Sbjct: 16 FEGSSEGT-------ISMAEGEDLSLMEEDKGDGWTRVRRKEGGE-GYVPT 58
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ D+ + F+ + ++I + D+NWW G G IPS
Sbjct: 16 FEPRTPDE-------LYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPS 56
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 30.7 bits (70), Expect = 0.15
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 34 ALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGR 93
A++ L RA Y +D+ VSF +++ + D W G
Sbjct: 2 AMANLRTYRAM---------YDYSAQDEDE-------VSFRDGDYIVNVQPIDDGWMYGT 45
Query: 94 LVKEGSECGFIPS 106
+ + G G +P+
Sbjct: 46 VQRTGRT-GMLPA 57
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 30.3 bits (69), Expect = 0.18
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
Y +D+ ++F + EK D WW G
Sbjct: 12 YKAQREDE-------LTFTKSAIIQNVEKQDGGWWRGDY 43
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 30.3 bits (69), Expect = 0.19
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 71 VSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+S E + + EK +S WW E G++P+
Sbjct: 25 LSLQAGEVVDVIEKNESGWWFVST---SEEQGWVPA 57
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 33.0 bits (76), Expect = 0.20
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 218 LAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFDVILDE 277
+ LS V +K++S KVLQ +++ G + + V V +K+ + P+E + L
Sbjct: 173 MRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPV-CVIVDKMEKIPREEVEAQLAV 231
Query: 278 NQL-EDACEHIAEYLE 292
L + I L
Sbjct: 232 LGLEPTVVDAITTTLS 247
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 29.9 bits (68), Expect = 0.25
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + +D+ +SF + +H+ + WW G G+ PS
Sbjct: 13 FQQTNEDE-------LSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPS 53
>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC
domain, type III, effector, T3SS,
nucleotidyltransferase, virulence; 1.80A {Vibrio
parahaemolyticus}
Length = 314
Score = 32.6 bits (73), Expect = 0.26
Identities = 15/117 (12%), Positives = 42/117 (35%)
Query: 379 NSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKAL 438
N + L T ++ E ++ FK TP DV+ + + E++ + ++A+
Sbjct: 10 NEQGQAQRLQTSSSVEHGQMLFKDANLKTPSDVLNAFAKLDSKMVKSHAAELSQLAERAM 69
Query: 439 FDFLKHRFEGRIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIER 495
+ + G+ + + D + + + + + ++Q +
Sbjct: 70 TEVMLETDSGKNLKALIGDDAVKSLAVRVVKDYGGGVAAAQKNPEVRINQMQAVFDM 126
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 29.9 bits (68), Expect = 0.27
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y D ++F E + + +K D WW G + G G PS
Sbjct: 17 YSSVEPGD-------LTFTEGEEILVTQK-DGEWWTGSI---GDRSGIFPS 56
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 30.2 bits (68), Expect = 0.28
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLV---KEGSECGFIPS 106
+ D + ++ + + + E++ W G + + G+ P
Sbjct: 27 FWNLHDPTA------LNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPP 74
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 30.4 bits (69), Expect = 0.28
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + V+ + L + + +WW + + GF+P+
Sbjct: 26 YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEV--NDRQ-GFVPA 66
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 29.9 bits (68), Expect = 0.29
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + DD+ +SFD + + E D WW G +G G P+
Sbjct: 18 YQAAGDDE-------ISFDPDDIITNIEMIDDGWWRGVC--KGRY-GLFPA 58
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 29.9 bits (68), Expect = 0.30
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y D+ + + L + + + WW + GF+P
Sbjct: 17 YTAQNPDE-------LDLSAGDILEVILEGEDGWWTVER---NGQRGFVPG 57
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 29.9 bits (68), Expect = 0.31
Identities = 5/36 (13%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 71 VSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ ++ + L ++ + + W+ ++ G G P+
Sbjct: 23 LELEVDDPLLVELQAEDYWYEAYNMRTG-ARGVFPA 57
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 29.4 bits (67), Expect = 0.31
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
Y DD+ ++ + E + K D WW G++
Sbjct: 10 YQAQHDDE-------LTISVGEIITNIRKEDGGWWEGQI 41
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 29.5 bits (67), Expect = 0.31
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + +D+ +SF + +H+ + WW G G+ PS
Sbjct: 15 FQQTNEDE-------LSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPS 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.35
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 31 ERQALSQLE---KARAKNV--AFAVRTNVK 55
E+QAL +L+ K A + A A++ ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 3.0
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 492 EIERVYELASTLQVYYP 508
E + + +L ++L++Y
Sbjct: 18 EKQALKKLQASLKLYAD 34
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 30.8 bits (69), Expect = 0.36
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ GS +S I + + I+E +W+ G L+K G P
Sbjct: 68 FQGSGAPQ-------LSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPK 110
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 29.1 bits (66), Expect = 0.38
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
YD D+ +SF+ ++ + I ++ S WW GRL + G P+
Sbjct: 14 YDAQDTDE-------LSFNANDIIDIIKEDPSGWWTGRL---RGKQGLFPN 54
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 32.0 bits (73), Expect = 0.42
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ + D +SF E L I + +WW+ + G G+IPS
Sbjct: 11 YESRTETD-------LSFKKGERLQIVNNTEGDWWLAHSLSTGQT-GYIPS 53
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 29.6 bits (67), Expect = 0.45
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ DD+ + F ++ + I + D + W+G L G+ P+
Sbjct: 16 FERHDDDE-------LGFRKNDIITIISQKDEHCWVGEL---NGLRGWFPA 56
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 29.2 bits (66), Expect = 0.46
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRL 94
+F + EK + WW G
Sbjct: 24 TFIKSAIIQNVEKQEGGWWRGDY 46
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.1 bits (66), Expect = 0.50
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ ++D + + + + E + +WW G++ GF P+
Sbjct: 16 FVPQENED-------LEMRPGDIITLLEDSNEDWWKGKI---QDRIGFFPA 56
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 29.1 bits (66), Expect = 0.52
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ + ++ E L + + W + + G G+IPS
Sbjct: 16 FEARNPRE-------LTVVQGEKLEVLDHSKRWWLVKN--EAGRS-GYIPS 56
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 29.2 bits (66), Expect = 0.54
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
S + +++ + WW G L G+ PS
Sbjct: 28 SVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPS 59
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 29.2 bits (66), Expect = 0.55
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEK-YDSNWWIGRLVKEGSECGFIPS 106
+ ++ ++ E + + W G+ K G + G +P+
Sbjct: 18 FAAEPGNNE------LTVTEGEIITVTNPNVGGGWLEGKNNK-GEQ-GLVPT 61
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 28.7 bits (65), Expect = 0.58
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+D D + + F +F+H+ + D NWW G + G P
Sbjct: 11 FDPQEDGE-------LGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPR 51
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 29.2 bits (66), Expect = 0.59
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRLVKEGSECGFIPS 106
Y S D+ ++ + HE L + E D +W R + + G++P
Sbjct: 22 YKASQPDE-------LTIEEHEVLEVIEDGDMEDWVKAR--NKVGQVGYVPE 64
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 29.0 bits (65), Expect = 0.63
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 8/76 (10%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKLENLRLQQTQARNPKLYSSKT 130
+ + L + + +WW + + GF+P+ VK +L + L
Sbjct: 9 TMKKGDILTLLNSTNKDWWKVEV--NDRQ-GFVPAAYVK----KLDSGTGKELVLALYDY 61
Query: 131 SSTSNLGALSSDAPSP 146
+ + S P P
Sbjct: 62 QESGDNAPSYSPPPPP 77
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 28.6 bits (65), Expect = 0.68
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ +D+ + F E + + + + +WW GRL G P+
Sbjct: 10 FEALEEDE-------LGFRSGEVVEVLDSSNPSWWTGRL--HNKL-GLFPA 50
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 28.9 bits (65), Expect = 0.70
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 17/71 (23%)
Query: 36 SQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLV 95
+AR + S D ++ + + I K W+G L
Sbjct: 7 GFCGRARVH---------TDFTPSPYDTD-----SLKLKKGDIIDIISKPPMGTWMGLL- 51
Query: 96 KEGSECGFIPS 106
++ G
Sbjct: 52 --NNKVGTFKF 60
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 28.9 bits (65), Expect = 0.74
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y +D+ +SF +++ +K D W+ G + G G P
Sbjct: 26 YTKDKEDE-------LSFQEGAIIYVIKKNDDGWYEGVM--NGVT-GLFPG 66
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 28.7 bits (65), Expect = 0.75
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
Y G D + F+ + + ++ + D NW+ G +
Sbjct: 16 YRGKNPGD-------LKFNKGDVILLRRQLDENWYQGEI 47
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 28.9 bits (65), Expect = 0.79
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGS--ECGFIPS 106
S + + I +K S WW G L G + G+ P+
Sbjct: 25 SLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA 61
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 28.9 bits (65), Expect = 0.80
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y G + +SF + L + E+ S+WW G G G IP
Sbjct: 19 YTGRTAQE-------LSFRRGDVLRLHERASSDWWRGEH--NGMR-GLIPH 59
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 28.4 bits (64), Expect = 0.86
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 44 KNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
+N R K + D + A++ ++ E + + + S W G
Sbjct: 3 QNGPIYARVIQKRVPNAYDKT-----ALALEVGELVKVTKINVSGQWEGEC 48
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 28.5 bits (64), Expect = 0.87
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 72 SFDIHEFLHIKEKYD-----SNWWIGRLVKEGSECGFIPS 106
+ + + I K D S+WW R K G+ G+IP
Sbjct: 26 ALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNI-GYIPY 63
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 28.9 bits (65), Expect = 0.87
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + + + I EK + WW G L + G P+
Sbjct: 25 NLEKGDIVIIHEKKEEGWWFGSL---NGKKGHFPA 56
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 28.1 bits (63), Expect = 0.89
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
Y + V+ + L + + +WW +
Sbjct: 30 YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEV 61
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 28.5 bits (64), Expect = 0.91
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHI-KEKYDSNWWIGRLVKEGSECGFIPS 106
V+T + + +SF + L + + W G G+ PS
Sbjct: 10 VKTIFPHTAGNNKTL------LSFAQGDVLTLLIPEEKDGWLYGEHDTTK-ARGWFPS 60
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 28.9 bits (65), Expect = 0.92
Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + + ++F + + + + + +WW G++ + E G+ P+
Sbjct: 19 HVTMANRE-------LAFKAGDVIKVLDASNKDWWWGQI--DDEE-GWFPA 59
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 28.3 bits (64), Expect = 0.93
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
+D D D + + + + EK W+ G
Sbjct: 11 FDPQQDGD-------LGLKPGDKVQLLEKLSPEWYKGSC 42
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 28.4 bits (64), Expect = 0.97
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKLE 111
++ + D++ ++F E + + + D NWW G G PS V +
Sbjct: 26 FEAAEDNE-------LTFKAGEIITVLDDSDPNWWKGET---HQGIGLFPSNFVTAD 72
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 28.5 bits (64), Expect = 0.97
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
Y + DD+ +SFD + + E D WW G
Sbjct: 26 YQAAGDDE-------ISFDPDDIITNIEMIDDGWWRGVC 57
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 28.4 bits (64), Expect = 0.99
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHI-KEKYDSNWWIGRLVKEGSECGFIPS 106
V+ + + +SF + + + + W G K G+ P
Sbjct: 10 VKAIFSHAAGDNSTL------LSFKEGDLITLLVPEARDGWHYGESEKTK-MRGWFPF 60
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 27.9 bits (63), Expect = 1.0
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ + ++F + + + K D NWW G+L + G PS
Sbjct: 11 FNPQESGE-------LAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 51
>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant,
TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP:
a.45.1.1 c.47.1.5
Length = 230
Score = 30.4 bits (69), Expect = 1.0
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 287 IAEYLEAYWRATHPPAAPPQPLTLLPPRQLTAHQSVVIPPSPSMGSAESNFSQPSSDLSL 346
I +Y++ + +T P P P R A+ +
Sbjct: 72 ILQYIDEVFASTGPSLLPADPYERAIARFWVAYVDDKLVA-----------PWRQWLRGK 120
Query: 347 DEEKETLRREKERQALSQLEKA 368
EE+++ +++ A+ LE A
Sbjct: 121 TEEEKSEGKKQAFAAVGVLEGA 142
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ + + + F + + + + D NW+ G L G GF P
Sbjct: 16 FEPENEGE-------LGFKEGDIITLTNQIDENWYEGML--HGHS-GFFPI 56
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 30.7 bits (68), Expect = 1.1
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP 107
F + L I++K + WW + + G IP P
Sbjct: 152 PFKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPVP 185
Score = 30.7 bits (68), Expect = 1.1
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ ++ E + + + S W G + G P
Sbjct: 257 ALEVGELVKVTKINVSGQWEGEC---NGKRGHFPF 288
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 28.0 bits (63), Expect = 1.2
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + + I E+ + WW G L ++ G PS
Sbjct: 19 ELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPS 50
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 28.9 bits (65), Expect = 1.2
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
Y + +D+ +SF + +++ K D +WW G +
Sbjct: 43 YAANNEDE-------LSFSKGQLINVMNKDDPDWWQGEI 74
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 28.0 bits (63), Expect = 1.2
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ ++I ++ D NW+ G G G P
Sbjct: 25 PLQKGDIVYIYKQIDQNWYEGEH--HGRV-GIFPR 56
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 27.9 bits (63), Expect = 1.3
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y DD+ ++ + + + + + W E G +P+
Sbjct: 10 YVQKDDDE-------ITITPGDKISLVARDTGSGWTKINNDTTGETGLVPT 53
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.9 bits (66), Expect = 1.4
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 259 AAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTA 318
AA LAQ E+ + DE A + A P P +
Sbjct: 24 AAAFLAQQESEIAGIENDEGFGAPA-------------GSQGGLAQPGPASGASEDMGAT 70
Query: 319 HQSVVIPPSPSMGSAESNFSQPSSDLSLDEEKETLRREKERQALSQLEKARVTDDNESIG 378
V + + +Q L +E E++R+ +E Q E + E
Sbjct: 71 VNGDVFQEANGPADGYAAIAQADR---LTQEPESIRKWREEQRKRLQELDAASKVMEQEW 127
Query: 379 NSRAGKN 385
+A K+
Sbjct: 128 REKAKKD 134
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 27.7 bits (62), Expect = 1.6
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL 94
+ K D + A++ ++ + + + + W G +
Sbjct: 4 AKAIQKRVPCAYDKT-----ALALEVGDIVKVTRMNINGQWEGEV 43
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 27.6 bits (62), Expect = 1.8
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRL 94
+ + + + + + WW G L
Sbjct: 25 ELKVGDIIEVVGEVEEGWWEGVL 47
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 27.6 bits (62), Expect = 1.8
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ ++ +S E L + E W + + G G++P
Sbjct: 16 FTARNANE-------LSVLKDEVLEVLEDGRQWWKLRS--RSGQA-GYVPC 56
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 28.2 bits (63), Expect = 1.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
S + + EK WW G + G+ PS
Sbjct: 35 SLIKGTKVIVMEKCSDGWWRGSY---NGQVGWFPS 66
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 27.4 bits (61), Expect = 2.5
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 72 SFDIHEFLHIKEKYD-----SNWWIGRLVKEGSECGFIPS 106
+ + + I K D S+WW R K G+ G+IP
Sbjct: 33 ALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNI-GYIPY 70
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 27.4 bits (61), Expect = 2.6
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 71 VSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V+ + L + + +WW + + GF+P+
Sbjct: 16 VTMKKGDILTLLNSTNKDWWKVEV--NDRQ-GFVPA 48
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 29.0 bits (66), Expect = 2.8
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 217 QLAKTNLSPCIVYLKISSP--KVLQRLIKSRGKSQTRHLNVQMVAAEK-LAQCPQEMFDV 273
QL ++ +Y+ + P +L +K+R + +N +M + + + + F+
Sbjct: 117 QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNY 176
Query: 274 ILDENQLEDACEHIAEYLEA 293
+ + L + EYL
Sbjct: 177 FIVNDDLARTYAELREYLLG 196
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase;
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
1u2q_A
Length = 163
Score = 28.2 bits (64), Expect = 4.0
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 268 QEMFDVILDENQLEDACEHIAEYLEAYWRATHP 300
F+ + +E A + ++++ P
Sbjct: 132 HSDFEEVFA--VIESALPGLHDWVDERLARNGP 162
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 27.0 bits (60), Expect = 4.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRL 94
+F E + + + D+NWW G
Sbjct: 35 TFKHGEIIIVLDDSDANWWKGEN 57
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 28.5 bits (63), Expect = 4.2
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ GS +S I + + I+E +W+ G L+K G P
Sbjct: 26 FQGSGAPQ-------LSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPK 68
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 27.1 bits (60), Expect = 4.7
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 72 SFDIHEFLHIKEKYD-----SNWWIGRLVKEGSECGFIPS 106
+ + + I K D S+WW R K G+ G+IP
Sbjct: 33 ALKKGDLMAILSKKDPLGRDSDWWKVRT-KNGNI-GYIPY 70
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.9 bits (63), Expect = 6.0
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 190 TEIERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQ 249
T+ E V+++ ++ +LD + + LSP IV++ + ++ K
Sbjct: 98 TKFETVHQIHKQNKIAILDIE-PQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQKD- 155
Query: 250 TRHLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEA 293
+E + FD+ L N +++ + + E +
Sbjct: 156 ----------SEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQ 189
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 28.2 bits (63), Expect = 6.7
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ S D+ +S E L + + W + + G++PS
Sbjct: 52 FVASGDNT-------LSITKGEKLRVLGYNHNGEWCEAQ-TKNGQ-GWVPS 93
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 27.7 bits (61), Expect = 8.2
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 430 VTDMMQKALFDFLKHRFEGRIIITRVTAD 458
V+D + + + + + RV A
Sbjct: 108 VSDTRRVSDIQWFREAYGAVTQTVRVVAL 136
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 28.1 bits (63), Expect = 8.5
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ G+ + D + F + L I W K G E G IP+
Sbjct: 20 FHGTAEQD-------LPFCKGDVLTIVAVTKDPNWYKAKNKVGRE-GIIPA 62
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.0 bits (62), Expect = 9.5
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 72 SFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTS 131
F + + + + + WW GR+ G+ P+ + + + L + +
Sbjct: 48 GFKAGDVIEVMDATNREWWWGRV---ADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGA 104
Query: 132 STSNLGALSSD 142
A SS
Sbjct: 105 EDGGAEAQSSK 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.127 0.350
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,308,090
Number of extensions: 437609
Number of successful extensions: 1040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 172
Length of query: 510
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 412
Effective length of database: 3,965,535
Effective search space: 1633800420
Effective search space used: 1633800420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.9 bits)