RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6613
(510 letters)
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type
calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId:
9986]}
Length = 219
Score = 275 bits (704), Expect = 4e-91
Identities = 130/165 (78%), Positives = 149/165 (90%), Gaps = 3/165 (1%)
Query: 146 PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLV 205
G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLV
Sbjct: 52 EGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLV 110
Query: 206 VLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQ 265
VLD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQ
Sbjct: 111 VLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQ 170
Query: 266 C-PQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPA-APPQPL 308
C PQE FDVILDENQLEDACEH+A+YLEAYW+ATHPP+ P PL
Sbjct: 171 CPPQESFDVILDENQLEDACEHLADYLEAYWKATHPPSSNLPNPL 215
Score = 196 bits (499), Expect = 2e-60
Identities = 90/109 (82%), Positives = 99/109 (90%), Gaps = 1/109 (0%)
Query: 396 KKIFFKKQETTTPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRV 455
+ FFKK E T PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRV
Sbjct: 1 RMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRV 60
Query: 456 TADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQ 504
TADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ
Sbjct: 61 TADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQ 108
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 122 bits (308), Expect = 6e-34
Identities = 65/124 (52%), Positives = 83/124 (66%), Gaps = 3/124 (2%)
Query: 25 TLRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEK 84
+ RRE E QA QLE+A+ K VAFAVRTNV Y G +D++ PV G V+F+ +FLHIKEK
Sbjct: 1 SARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEK 60
Query: 85 YDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSDAP 144
Y ++WWIGRLVKEG + FIPSP +LE++RL+Q Q S SS S++G S P
Sbjct: 61 YSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKARR---SGNPSSLSDIGNRRSPPP 117
Query: 145 SPGM 148
S
Sbjct: 118 SLAK 121
Score = 36.9 bits (85), Expect = 0.001
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 356 EKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYDVV 412
E L Q +KAR + + S+ + + + P + K+K K+ E PYDVV
Sbjct: 85 RLESIRLKQEQKARRSGNPSSLSDIGNRR---SPPPSLAKQK--QKQAEHVPPYDVV 136
Score = 31.2 bits (70), Expect = 0.13
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 352 TLRREKERQALSQLEKAR 369
+ RRE E QA QLE+A+
Sbjct: 1 SARREVESQAQQQLERAK 18
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 120 bits (303), Expect = 1e-33
Identities = 63/93 (67%), Positives = 77/93 (82%)
Query: 27 RREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD 86
RRE ERQA +QLEKA+ K VAFAVRTNV+Y + +DD PV G A+SF+ +FLH+KEK++
Sbjct: 1 RREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFN 60
Query: 87 SNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ 119
++WWIGRLVKEG E GFIPSPVKLEN+RLQ Q
Sbjct: 61 NDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQ 93
Score = 30.7 bits (69), Expect = 0.083
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 354 RREKERQALSQLEKARV 370
RRE ERQA +QLEKA+
Sbjct: 1 RREAERQAQAQLEKAKT 17
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 120 bits (302), Expect = 4e-33
Identities = 67/122 (54%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
Query: 26 LRREKERQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKY 85
+R+E+E+QA QLE+A++K VAFAV+TNV Y G++D+D PV AVSFD +FLHIKEKY
Sbjct: 2 IRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKY 61
Query: 86 DSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSSKTSSTSNLGALSSDAP 144
+++WWIGRLVKEG E GFIPSP++LEN+R+QQ Q + S +S+S+LG + S
Sbjct: 62 NNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRKRFHGGKSSGNSSSSLGEMVSGTF 121
Query: 145 SP 146
Sbjct: 122 RA 123
Score = 34.3 bits (78), Expect = 0.010
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 351 ETLRREKERQALSQLEKARVTDDNESIGNSRAGKNTLTTPTTKEKKKIFFKKQETTTPYD 410
E +R ++E++ + + S+G +G TPTT K+K K + PYD
Sbjct: 87 ENIRIQQEQKRKRFHGGKSSGNSSSSLGEMVSGT-FRATPTTTAKQK--QKVTKHIPPYD 143
Query: 411 VV 412
VV
Sbjct: 144 VV 145
Score = 31.2 bits (70), Expect = 0.11
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 353 LRREKERQALSQLEKAR 369
+R+E+E+QA QLE+A+
Sbjct: 2 IRQEREQQAAIQLERAK 18
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 56.3 bits (135), Expect = 1e-10
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS---ECGF 103
F +R YD + D A+SF + LH+ + D WW R V S + GF
Sbjct: 1 GFYIRALFDYDKT--KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 58
Query: 104 IPSPVKLENLRLQQTQARNPKLYSSKTSSTSNLGALSSD 142
IPS ++E R + ++ + SS S LS +
Sbjct: 59 IPSKRRVE--RREWSRLKAKDWGSSSGSQGREDSVLSYE 95
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 36.7 bits (85), Expect = 3e-04
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
YD + D++ ++F ++ + E D +WW+G L K+GS+ G PS
Sbjct: 9 YDAAEDNE-------LTFVENDKIINIEFVDDDWWLGELEKDGSK-GLFPS 51
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 35.4 bits (82), Expect = 8e-04
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + V+ + L + + +WW + GF+P+
Sbjct: 9 YQEKSPRE-------VTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPA 49
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 35.9 bits (83), Expect = 8e-04
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V+ Y +D+ ++F + EK + WW G G + + PS
Sbjct: 9 VKALFDYKAQREDE-------LTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPS 56
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 35.4 bits (82), Expect = 8e-04
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V+ +D D + + F +F+H+ + D NWW G + G P
Sbjct: 4 VQALFDFDPQEDGE-------LGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPR 50
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 35.4 bits (82), Expect = 8e-04
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
++ +D+ + F E + + + + +WW GRL ++ G P+
Sbjct: 10 FEALEEDE-------LGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPA 50
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 35.0 bits (81), Expect = 0.001
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 46 VAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIP 105
+A VR ++ D++ ++F E + + + D+NWW G G P
Sbjct: 1 MARRVRALYDFEAVEDNE-------LTFKHGELITVLDDSDANWWQGEN---HRGTGLFP 50
Query: 106 S 106
S
Sbjct: 51 S 51
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 35.0 bits (81), Expect = 0.001
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V+ ++ + ++F + + + K D NWW G+L + G PS
Sbjct: 5 VQALFDFNPQESGE-------LAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPS 51
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 35.1 bits (81), Expect = 0.001
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + D+ VSF + + + D W G + + G G +P+
Sbjct: 12 YMAADADE-------VSFKDGDAIINVQAIDEGWMYGTVQRTGRT-GMLPA 54
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 35.1 bits (81), Expect = 0.001
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ +DD +SF E I + +WW R + G G+IPS
Sbjct: 9 YEAITEDD-------LSFHKGEKFQILNSSEGDWWEARSLTTGET-GYIPS 51
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 34.7 bits (80), Expect = 0.002
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
VR ++G+ ++D + F + L I++K + WW + + G IP
Sbjct: 4 VRALFDFNGNDEED-------LPFKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPV 51
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 34.8 bits (80), Expect = 0.002
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ + D +SF E L I + +WW+ + G G+IPS
Sbjct: 11 YESRTETD-------LSFKKGERLQIVNNTEGDWWLAHSLSTGQT-GYIPS 53
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 34.1 bits (78), Expect = 0.005
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V+ + + +D+ +S + +++ + WW G L G+ PS
Sbjct: 13 VKARFNFKQTNEDE-------LSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPS 59
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 35.7 bits (81), Expect = 0.006
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 205 VVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEK-L 263
+LD D S A L+ +++ S + L++ ++ RG +N ++ AA+ L
Sbjct: 95 CILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 154
Query: 264 AQCPQEMFDVILDENQLEDACEHIAEYLEA 293
A D ++ + L+ A + + +++ A
Sbjct: 155 AYAETGAHDKVIVNDDLDKAYKELKDFIFA 184
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 32.8 bits (75), Expect = 0.007
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V Y+ + +D + F + + + K + W G + G P
Sbjct: 8 VEALFSYEATQPED-------LEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPK 54
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 33.2 bits (75), Expect = 0.007
Identities = 5/48 (10%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 62 DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGS---ECGFIPS 106
D + + E + + N + G++P
Sbjct: 15 DYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPG 62
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 32.2 bits (73), Expect = 0.010
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + + ++ E ++ + + +WW + G+ PS
Sbjct: 7 YQTNDPQE-------LALRCDEEYYLLDSSEIHWWRVQDKNG--HEGYAPS 48
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 32.1 bits (73), Expect = 0.014
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y +D + + I E+ + WW R + G+IPS
Sbjct: 17 YMPMNAND-------LQLRKGDEYFILEESNLPWWRARDK--NGQEGYIPS 58
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 32.6 bits (74), Expect = 0.024
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y + +D+ +SF + +++ K D +WW G + G PS
Sbjct: 43 YAANNEDE-------LSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPS 83
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 32.3 bits (73), Expect = 0.035
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSP-VKLENLR 114
Y D+ VS E + + K WW+ R + G+ PS ++
Sbjct: 23 YTAVEGDE-------VSLLEGEAVEVIHKLLDGWWVIR---KDDVTGYFPSMYLQKSGQD 72
Query: 115 LQQTQARNPKLYSSKTSSTSNLGALSSDA 143
+ Q Q + + + SS N ++ +
Sbjct: 73 VSQAQRQIKRGAPPRRSSIRNAHSIHQRS 101
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 30.6 bits (69), Expect = 0.050
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ +D +SF + + + E+ WW R + E G+IPS
Sbjct: 13 YEAIHHED-------LSFQKGDQMVVLEESG-EWWKARSLATRKE-GYIPS 54
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 30.5 bits (69), Expect = 0.053
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ + D + + + I EK D +WW R + G+IPS
Sbjct: 11 FQATEAHD-------LRLERGQEYIILEKNDLHWWRAR--DKYGSEGYIPS 52
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 30.1 bits (68), Expect = 0.061
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 11/52 (21%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS-NWWIGRLVKEGSECGFIPS 106
+ S D+ +S E L + + W + + G++PS
Sbjct: 9 FVASGDNT-------LSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPS 50
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 29.5 bits (66), Expect = 0.15
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 12/72 (16%)
Query: 36 SQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYD-SNWWIGRL 94
S + K G+ + + + + + + NWW GR
Sbjct: 2 SHMPKMEVF---QEYYGIPPPPGAFGPF-------LRLNPGDIVELTKAEAEHNWWEGRN 51
Query: 95 VKEGSECGFIPS 106
G+ P
Sbjct: 52 TATNEV-GWFPC 62
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 28.5 bits (64), Expect = 0.25
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKE-KYDSNWWIGRLVKEGSECGFIPSP-VKLE 111
+ + DD+ +SF + L + + D NW+ L + GFIP ++++
Sbjct: 9 FKATADDE-------LSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYIEMK 56
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 28.6 bits (64), Expect = 0.30
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 13/54 (24%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSN---WWIGRLVKEGSECGFIPS 106
Y+ DD+ + + + I + D + WW RL + G++P
Sbjct: 13 YEPQNDDE-------LPMKEGDCMTIIHREDEDEIEWWWARL---NDKEGYVPR 56
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 28.3 bits (63), Expect = 0.30
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ S D D + F+ E L I E+ WW + + G E GFIP
Sbjct: 15 YEPSHDGD-------LGFEKGEQLRILEQSG-EWWKAQSLTTGQE-GFIPF 56
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 28.3 bits (63), Expect = 0.37
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDS--NWWIGRLVKEGSECGFIPS 106
V+T + +++ ++F+ E + + EK ++ WW + + + G +P
Sbjct: 9 VQTLYPFSSVTEEE-------LNFEKGETMEVIEKPENDPEWWKCKNARG--QVGLVPK 58
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
coli [TaxId: 562]}
Length = 264
Score = 30.7 bits (68), Expect = 0.39
Identities = 11/59 (18%), Positives = 21/59 (35%)
Query: 252 HLNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYWRATHPPAAPPQPLTL 310
++ V + A + + + +++ IAE L A R A + L L
Sbjct: 183 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 241
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.43
Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 206 VLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQ 265
+ + + KT+L P ++++ S VL++ ++ R L ++ AA +
Sbjct: 94 CVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME 153
Query: 266 CPQE--MFDVILDENQLEDACEHIAEYLEA 293
+E +FD+++ + L+ A + + L
Sbjct: 154 SSKEPGLFDLVIINDDLDKAYATLKQALSE 183
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 53
Score = 27.5 bits (61), Expect = 0.46
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y D+ VS E + + K WW+ R G+ PS
Sbjct: 9 YTAVEGDE-------VSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPS 49
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA
1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 27.9 bits (62), Expect = 0.61
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
V+T + + +SF + L + + + W+ G+ PS
Sbjct: 10 VKTIFPHTAGNNKTL------LSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPS 60
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 29.8 bits (66), Expect = 0.63
Identities = 12/92 (13%), Positives = 28/92 (30%)
Query: 208 DCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCP 267
C + + + + P+ L+ +++ + A KL Q
Sbjct: 100 HCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEF 159
Query: 268 QEMFDVILDENQLEDACEHIAEYLEAYWRATH 299
E F I++ + E+ + +E
Sbjct: 160 TECFSAIVEGDSFEEIYHKVKRVIEDLSGPYI 191
Score = 26.3 bits (57), Expect = 7.9
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 416 RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIIT 453
RP++++GP+ D L +F + T
Sbjct: 10 RPIIILGPT------KDRANDDLLSEFPDKFGSCVPHT 41
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 28.0 bits (62), Expect = 0.75
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRL--VKEGSECGFIPS 106
Y S + +S + + I +K S WW G L + + G+ P+
Sbjct: 16 YVASGSEQ-------LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA 61
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 27.2 bits (60), Expect = 0.81
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y+ + + ++ + + + EK +S WW ++ ++ G+IP+
Sbjct: 11 YEKTSGSE-------MALSTGDVVEVVEKSESGWWFCQMK---AKRGWIPA 51
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 56
Score = 26.4 bits (58), Expect = 1.2
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
Y DD+ ++ + + + + + W E G +P+
Sbjct: 8 YVQKDDDE-------ITITPGDKISLVARDTGSGWTKINNDTTGETGLVPT 51
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 56 YDGSIDDDSPVHGYAVSFDIHEFL-HIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ G+ + D + F + L + D NW+ + + G IP+
Sbjct: 15 FHGTAEQD-------LPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPA 57
>d2guja1 b.106.1.3 (A:5-143) Phage-like element PBSX protein XkdM
{Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 27.7 bits (62), Expect = 1.6
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 424 SLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTAD 458
+ Y+VT + D++K + + V D
Sbjct: 56 TATFYKVTSKFVLLMMDYVKKGSDPYFTLQAVLDD 90
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 26.4 bits (58), Expect = 2.0
Identities = 7/57 (12%), Positives = 12/57 (21%), Gaps = 9/57 (15%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPS 106
+ D + +SF W+ + G IP
Sbjct: 13 AKALYACKAEHDSE-------LSFTAGTVFDNVHPSQEPGWLEG--TLNGKTGLIPE 60
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 26.8 bits (58), Expect = 4.6
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 377 IGNSRAGKNTLTTPTTKEKKKIFFKKQETTTP---YDVVPSMRPVVLVGPSLKGYEVTDM 433
+G GK+TL + + K KI T P R V+ E
Sbjct: 7 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLP-GLIEGAHQ 65
Query: 434 MQKALFDFLKHRFEGRIIITRVTA 457
FL+H R+I+ +
Sbjct: 66 GVGLGHQFLRHIERTRVIVHVIDM 89
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.5 bits (58), Expect = 7.5
Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 8/96 (8%)
Query: 160 LAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIER------VYELASTLQLVVLDCDTIN 213
++ I + S + + +R + A+ + + +
Sbjct: 84 GMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVL 143
Query: 214 HPSQLAKTNLSPC-IVYLKISSPKVLQRLIKSRGKS 248
L L IV + + + R + R +
Sbjct: 144 AFVALIPPTLPGTNIVLGALPEDRHIDR-LAKRQRP 178
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 110
Score = 25.3 bits (55), Expect = 9.2
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 250 TRHLNVQMVAAEKLAQCPQ--EMFDVILDENQLEDACEHIAEYLEAYWRATHP 300
R ++ + E F + + LED C I + + P
Sbjct: 58 GRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ-GKQQMP 109
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 25.2 bits (55), Expect = 9.7
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 269 EMFDVILDENQLEDACEHIAEYLE 292
E D + L++ + LE
Sbjct: 73 EYVDPTVTLELLDELTHEFLQILE 96
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine
infectious anemia virus [TaxId: 11665]}
Length = 131
Score = 25.5 bits (56), Expect = 9.8
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 285 EHIAEYLEAYWRATHPPAAPPQPLTLLPPRQLTA 318
+ I + + W HP P P +TA
Sbjct: 56 DAIDK-IADDWDNRHPLPNAPLVAPPQGPIPMTA 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.127 0.350
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,749,887
Number of extensions: 80445
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 56
Length of query: 510
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 421
Effective length of database: 1,185,626
Effective search space: 499148546
Effective search space used: 499148546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.2 bits)