BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6615
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
 pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
 pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
 pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
           Competitive Antagonist Zk 200775
          Length = 823

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query: 22  NCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVT 81
           N +W+  GA +QQG    P + SGR+V G WW F L+I+++Y  NL AFLT   M +P+ 
Sbjct: 566 NSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIE 625

Query: 82  NVNEL 86
           +  +L
Sbjct: 626 SAEDL 630


>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
 pdb|2E4G|B Chain B, Rebh With Bound L-Trp
 pdb|2OAL|A Chain A, Rebh With Bound Fad
 pdb|2OAL|B Chain B, Rebh With Bound Fad
 pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
 pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
 pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The Apo Form
 pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The Apo Form
 pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
           Complex
 pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
           Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
           Complex
          Length = 550

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 165 VAMSLFSMHTHYRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSP 213
           V  +L+ +  H+  KS+ N ++   +   ++ +F   R  I  H+Y+SP
Sbjct: 384 VYAALYQLVKHFPDKSL-NPVLTARFNREIETMFDDTRDFIQAHFYFSP 431


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,351,424
Number of Sequences: 62578
Number of extensions: 294951
Number of successful extensions: 497
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 2
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)