Query psy6615
Match_columns 227
No_of_seqs 179 out of 799
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:39:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1054|consensus 100.0 5.2E-46 1.1E-50 347.2 6.1 191 2-211 570-775 (897)
2 KOG4440|consensus 100.0 1.8E-31 3.9E-36 251.0 4.7 198 2-223 593-797 (993)
3 KOG1053|consensus 100.0 3.9E-30 8.4E-35 248.8 3.6 196 2-223 588-798 (1258)
4 KOG1052|consensus 99.9 1.8E-24 3.9E-29 210.7 7.1 196 2-222 365-563 (656)
5 PF00060 Lig_chan: Ligand-gate 99.6 3.1E-17 6.6E-22 130.3 -4.9 88 2-89 25-114 (148)
6 smart00079 PBPe Eukaryotic hom 98.7 1.3E-08 2.9E-13 79.2 3.9 123 79-223 1-125 (134)
7 PF07885 Ion_trans_2: Ion chan 97.3 0.00018 4E-09 51.6 2.7 58 15-72 20-78 (79)
8 PF00497 SBP_bac_3: Bacterial 95.4 0.0075 1.6E-07 49.2 1.7 114 78-223 100-216 (225)
9 TIGR02995 ectoine_ehuB ectoine 94.3 0.044 9.6E-07 47.7 3.6 127 69-224 122-254 (275)
10 PRK10797 glutamate and asparta 93.3 0.063 1.4E-06 47.9 2.7 133 62-224 129-264 (302)
11 PLN03192 Voltage-dependent pot 92.0 0.1 2.2E-06 53.0 2.5 54 20-73 251-305 (823)
12 KOG1419|consensus 91.6 0.14 3E-06 49.6 2.8 61 14-74 264-325 (654)
13 KOG3713|consensus 89.1 0.2 4.3E-06 47.8 1.5 48 14-61 372-420 (477)
14 TIGR01096 3A0103s03R lysine-ar 89.0 0.23 5E-06 41.9 1.7 115 78-224 121-244 (250)
15 PRK11260 cystine transporter s 88.1 0.58 1.3E-05 40.3 3.7 121 70-223 131-253 (266)
16 PRK09495 glnH glutamine ABC tr 88.1 0.45 9.8E-06 40.4 3.0 111 78-223 121-235 (247)
17 KOG1418|consensus 86.8 0.25 5.5E-06 44.7 0.7 60 14-73 110-170 (433)
18 PRK10537 voltage-gated potassi 86.1 0.57 1.2E-05 43.9 2.6 55 15-69 164-219 (393)
19 PRK15007 putative ABC transpor 86.0 0.64 1.4E-05 39.1 2.7 112 79-224 117-235 (243)
20 PRK10859 membrane-bound lytic 85.2 0.86 1.9E-05 43.4 3.5 119 77-223 138-258 (482)
21 cd00134 PBPb Bacterial peripla 83.6 0.79 1.7E-05 36.2 2.1 115 78-224 95-212 (218)
22 PRK11917 bifunctional adhesin/ 78.9 3.1 6.7E-05 36.0 4.3 104 78-209 138-243 (259)
23 KOG0498|consensus 78.7 1.7 3.8E-05 43.7 3.0 54 20-73 295-349 (727)
24 TIGR03871 ABC_peri_MoxJ_2 quin 74.6 6.8 0.00015 32.5 5.2 49 60-110 74-122 (232)
25 PRK15010 ABC transporter lysin 70.8 3.8 8.2E-05 35.1 2.8 113 81-223 126-246 (260)
26 KOG1545|consensus 65.5 0.87 1.9E-05 42.4 -2.4 47 12-58 386-433 (507)
27 COG0834 HisJ ABC-type amino ac 64.9 6.3 0.00014 33.2 2.9 130 60-223 118-256 (275)
28 smart00062 PBPb Bacterial peri 64.5 6.5 0.00014 30.7 2.8 30 77-110 95-124 (219)
29 TIGR02285 conserved hypothetic 61.6 2.7 5.8E-05 36.2 0.1 62 159-224 185-254 (268)
30 KOG3684|consensus 60.8 8.4 0.00018 36.8 3.2 53 16-72 284-337 (489)
31 PRK09959 hybrid sensory histid 49.7 10 0.00023 39.7 2.1 68 78-174 154-222 (1197)
32 KOG1420|consensus 46.3 4.5 9.8E-05 40.0 -1.1 58 14-71 283-341 (1103)
33 PF09084 NMT1: NMT1/THI5 like; 45.4 16 0.00034 30.0 2.2 43 62-110 69-111 (216)
34 KOG4390|consensus 32.8 6.8 0.00015 37.0 -2.1 88 14-111 351-449 (632)
35 PF00520 Ion_trans: Ion transp 28.8 67 0.0014 25.1 3.3 52 15-66 141-199 (200)
36 TIGR03427 ABC_peri_uca ABC tra 25.3 40 0.00086 30.6 1.5 27 80-110 98-124 (328)
37 PF06753 Bradykinin: Bradykini 24.0 35 0.00077 17.8 0.5 10 197-206 7-16 (19)
38 TIGR03870 ABC_MoxJ methanol ox 23.8 1.2E+02 0.0027 25.6 4.2 47 60-110 75-124 (246)
39 TIGR01729 taurine_ABC_bnd taur 22.9 70 0.0015 27.8 2.5 28 77-108 89-116 (300)
40 PF14034 Spore_YtrH: Sporulati 21.4 22 0.00047 27.2 -0.9 38 48-88 4-41 (102)
No 1
>KOG1054|consensus
Probab=100.00 E-value=5.2e-46 Score=347.21 Aligned_cols=191 Identities=27% Similarity=0.450 Sum_probs=166.6
Q ss_pred CCCcccccc---Cc-----cCCCccchhhHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 2 ISPYYEHYK---IR-----EQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 2 ~sPy~~~~~---~~-----~~~~~~~l~~s~w~~~~~l~~qg~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
|||||||.. .. +..++|+++||+||++++|+|||++..|||.||||+.++||||+||++++||||||||||+
T Consensus 570 FSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv 649 (897)
T KOG1054|consen 570 FSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 649 (897)
T ss_pred cCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH
Confidence 899999842 11 1468999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCccccee
Q psy6615 74 PMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMISA 151 (227)
Q Consensus 74 ~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~~ 151 (227)
+++.+||.++|||++|+ +|.||+.+++++..||+.|. +++|++||.+|++. .+++.++.| ||+|
T Consensus 650 ErMvsPIESaEDLAkQt-eIaYGt~~~GSTkeFFr~Sk---iavy~kMW~yM~SaepsVFv~t~ae----------Gv~r 715 (897)
T KOG1054|consen 650 ERMVSPIESAEDLAKQT-EIAYGTLDSGSTKEFFRRSK---IAVYEKMWTYMKSAEPSVFVRTTAE----------GVAR 715 (897)
T ss_pred HhhcCcchhHHHHhhcc-eeeeeecCCCchHHHHhhhh---HHHHHHHHHHHhcCCcceeeehhhh----------HHHH
Confidence 99999999999999997 99999999999999999997 78999999999964 578888888 7888
Q ss_pred ecccCCCcEEEechhhhhhhhhhcccccCCCccccc----cceeccc-cCCCCcccccccceeee
Q psy6615 152 VNVCQGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVV----DLWTAGV-KGLFSPMRGSINKHYYY 211 (227)
Q Consensus 152 v~~~~G~yAFi~es~~leY~~~~~~~~~~~~~~~~~----d~~~~~~-~~~~sp~r~~i~~~~~~ 211 (227)
||.++|+|||+.|+++.|| .+.||+|. |..+ |..+.|. ...+|.+|+.+|-++++
T Consensus 716 VRksKGkyAfLLEsTmNey---~eqRkPCD--TMKVGgNLds~GYGiATp~Gsslr~~vNLAvLk 775 (897)
T KOG1054|consen 716 VRKSKGKYAFLLESTMNEY---IEQRKPCD--TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLK 775 (897)
T ss_pred HHhcCCceEeehHhhhhhh---hhccCCcc--ceecccccCCcceeecCCCCcccccchhhhhhh
Confidence 9999999999999999999 77777643 3333 3333331 33459999999999854
No 2
>KOG4440|consensus
Probab=99.97 E-value=1.8e-31 Score=250.98 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=169.3
Q ss_pred CCCccccc-c--CccCCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCCCC
Q psy6615 2 ISPYYEHY-K--IREQSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMD 77 (227)
Q Consensus 2 ~sPy~~~~-~--~~~~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~~ 77 (227)
||||++.+ + .++++...+++.++||+||.|++.| ++.+|||.|.|++..+|+-|+||++++|||||||||..++.+
T Consensus 593 fSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLVLdrPe 672 (993)
T KOG4440|consen 593 FSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLDRPE 672 (993)
T ss_pred cCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhheeecCcc
Confidence 89999763 3 3457889999999999999999999 688999999999999999999999999999999999999999
Q ss_pred CCCCCHHHH--hhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeeccc
Q psy6615 78 TPVTNVNEL--LENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVC 155 (227)
Q Consensus 78 ~~I~sl~DL--~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~ 155 (227)
..++++.|. ++.++++.+|++++|+.+.||+..-+ ...||++|.++ ++.+++| .|+.|++.
T Consensus 673 ~~ltGinDpRLRNps~nf~~aTVk~SsVd~YFrRqVE-----LS~MyR~ME~h--Ny~~A~e----------Aiq~v~~g 735 (993)
T KOG4440|consen 673 ERLTGINDPRLRNPSDNFIYATVKQSSVDIYFRRQVE-----LSTMYRHMEKH--NYESAAE----------AIQAVRDG 735 (993)
T ss_pred ccccCCCCccccCcccceeEEEecCccHHHHHHHHhH-----HHHHHHhhhhc--chhhHHH----------HHHHHHcC
Confidence 999999994 55557899999999999999999864 77899999975 6667777 55556543
Q ss_pred CCCcEEEechhhhhhhhhhcccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 156 QGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 156 ~G~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+ +.|||||++.|||....+|.+..-+..+---.|++| +|+ |||...|.-+| ++|..|+-.|
T Consensus 736 k-L~AFIWDS~rLEfEAs~~CeLvT~GeLFgRSgyGIGlqK~--SPWt~~vtlaI----L~~hEsGfME 797 (993)
T KOG4440|consen 736 K-LHAFIWDSARLEFEASQKCELVTTGELFGRSGYGIGLQKD--SPWTQNVTLAI----LKSHESGFME 797 (993)
T ss_pred c-eeEEEeecceeeehhhcccceEeccccccccccccccccC--CCCcchhhHHH----HHhhhcchHH
Confidence 2 599999999999988888887777777777777777 466 99999999999 7777776443
No 3
>KOG1053|consensus
Probab=99.96 E-value=3.9e-30 Score=248.83 Aligned_cols=196 Identities=10% Similarity=0.220 Sum_probs=167.6
Q ss_pred CCCcccccc----CccCCCccchhhHHHHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCCC
Q psy6615 2 ISPYYEHYK----IREQSGFHKFSNCVWYIYGALLQQGG-GKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMM 76 (227)
Q Consensus 2 ~sPy~~~~~----~~~~~~~~~l~~s~w~~~~~l~~qg~-~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~ 76 (227)
||||+...+ .++.+..|+|+.++|++|+.+++.+. ..+||++.+||++.+|.||++|++++|||||||||..+..
T Consensus 588 ~SPvgyn~~l~~gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~ 667 (1258)
T KOG1053|consen 588 FSPVGYNRNLANGKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEY 667 (1258)
T ss_pred cCcccccccccCCCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 799997532 33578899999999999999999995 5689999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhh-----CCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccccee
Q psy6615 77 DTPVTNVNELLE-----NKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISA 151 (227)
Q Consensus 77 ~~~I~sl~DL~~-----q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~ 151 (227)
-..++++.|-.. |.+.+|+||++++++|.+++++ |.+|+++|.+ .++...++ |++.
T Consensus 668 ~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~N-------yp~MHeYM~k--yNq~~v~d----------al~s 728 (1258)
T KOG1053|consen 668 YDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSN-------YPEMHEYMVK--YNQPGVED----------ALES 728 (1258)
T ss_pred hhhccccCcccccCccccCCCcccccCCCCchhhhHHhc-------cHHHHHHHHH--hccCchHH----------HHHH
Confidence 999999999754 3458999999999999999998 8899999998 46666677 5666
Q ss_pred ecccCCCcEEEechhhhhhhhhhc--ccccCCC--ccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 152 VNVCQGKPEYKWTVAMSLFSMHTH--YRKKSVP--NTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 152 v~~~~G~yAFi~es~~leY~~~~~--~~~~~~~--~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
++..+ ++|||||+++|+|-...+ |.+..++ +.+.+..|+++ +|+ |||+.-|+.++ +.|+..++++
T Consensus 729 LK~gK-LDAFIyDaAVLnY~agkDegCKLvTIGsgKvFAttGYGIal~k~--Spwkr~Idlal----lQy~gdGeme 798 (1258)
T KOG1053|consen 729 LKNGK-LDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALPKN--SPWKRQIDLAL----LQYLGDGEME 798 (1258)
T ss_pred Hhccc-chhHHHHHHHHHHhhccCCCceEEEecCCceeeecceeeecCCC--CcchhhHHHHH----HHHhccchHH
Confidence 65533 599999999999977654 5677788 78888888887 466 99999999999 7888777654
No 4
>KOG1052|consensus
Probab=99.90 E-value=1.8e-24 Score=210.71 Aligned_cols=196 Identities=27% Similarity=0.508 Sum_probs=163.4
Q ss_pred CCCccccccCccCCCccchhhHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCCC
Q psy6615 2 ISPYYEHYKIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVT 81 (227)
Q Consensus 2 ~sPy~~~~~~~~~~~~~~l~~s~w~~~~~l~~qg~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~~~~I~ 81 (227)
++|++| ....-....+++.+++|++++++++||+...|++.++|++.++||+|++|++++|||||+|+||+++..++|+
T Consensus 365 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~~~~~~i~ 443 (656)
T KOG1052|consen 365 LSPYEL-PPRQIVTSLFSLLNCLWLTVGSLLQQGSDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVPRLRSPID 443 (656)
T ss_pred cccccC-CccccceeEeecccchhhhhHHHhccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccc
Confidence 466776 1111135677788899999999999999899999999999999999999999999999999999999999999
Q ss_pred CHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhc-ccccccccccccccccCCcccceeecccCCCcE
Q psy6615 82 NVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIV-GVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPE 160 (227)
Q Consensus 82 sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~-~~~~v~~~~egv~~v~~d~pgi~~v~~~~G~yA 160 (227)
+++||++|+ ++.+|...++++..||+++ ++||..+.. ....+.+.+||++++..+. + |.||
T Consensus 444 ~~~dL~~~~-~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~e~~~~v~~~~--------~-~~~~ 505 (656)
T KOG1052|consen 444 SLDDLADQS-NIPYGTQRGSFTRIYLEES--------EDMWAFKVSQRSVPLASPEEGVERVRKGP--------S-GGYA 505 (656)
T ss_pred CHHHHHHhc-CCeEEEEecchHHHHHHHH--------HHHHhhhccCCCccCCCHHHHHHHHHcCC--------C-CceE
Confidence 999999754 8999999999999999998 247777776 4667778888666533332 1 4799
Q ss_pred EEechhhhhhhhhhc--ccccCCCccccccceeccccCCCCcccccccceeeeCccccccCccc
Q psy6615 161 YKWTVAMSLFSMHTH--YRKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKL 222 (227)
Q Consensus 161 Fi~es~~leY~~~~~--~~~~~~~~~~~~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~ 222 (227)
|+.+...++|....+ |....++..+..+.+++.+|| ||||..|+.++ +..+..+.+
T Consensus 506 ~~~~~~~~~~~~~~~~~c~~~~v~~~~~~~~~~~~~~~--Spl~~~is~~I----l~l~e~g~l 563 (656)
T KOG1052|consen 506 FASDELYLAYLFLRDEICDLTEVGEPFLYKGYGAFPKG--SPLRSLISRAI----LKLQETGIL 563 (656)
T ss_pred EEeccHHHHHHHhhcCCCceEEeCCcccCCCcceecCC--CccHHHHHHHH----HhhccccHH
Confidence 999999999999887 888888888888888866666 99999999999 666666554
No 5
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=99.58 E-value=3.1e-17 Score=130.31 Aligned_cols=88 Identities=35% Similarity=0.745 Sum_probs=64.7
Q ss_pred CCCccccc--cCccCCCccchhhHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCC
Q psy6615 2 ISPYYEHY--KIREQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTP 79 (227)
Q Consensus 2 ~sPy~~~~--~~~~~~~~~~l~~s~w~~~~~l~~qg~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~~~~ 79 (227)
++|+++.. ........+++.+++|++++++++||....|++.++|++.++||+|+++++++|||+|+|+||.++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~~~ 104 (148)
T PF00060_consen 25 FSPYEWRKNQSSPPRRWRFSLSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYEPP 104 (148)
T ss_dssp ----------------HHHHHHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHTSS
T ss_pred HhhhhhccccccccccCcccHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCC
Confidence 45666543 1223567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhC
Q psy6615 80 VTNVNELLEN 89 (227)
Q Consensus 80 I~sl~DL~~q 89 (227)
|+|+|||+++
T Consensus 105 i~sl~dL~~~ 114 (148)
T PF00060_consen 105 IDSLEDLANS 114 (148)
T ss_dssp -SSHHHHHTH
T ss_pred CCCHHHHHHC
Confidence 9999999974
No 6
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=98.70 E-value=1.3e-08 Score=79.17 Aligned_cols=123 Identities=16% Similarity=0.253 Sum_probs=85.3
Q ss_pred CCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhh-cccccccccccccccccCCcccceeecccCC
Q psy6615 79 PVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKI-VGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 79 ~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~-~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
||++++||..++ +.++|+..||+.+.+++.... +.+.+++..+. .......+..+ ++..|+. |
T Consensus 1 ~i~~~~dl~~~~-~~~vgv~~gs~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~--g 64 (134)
T smart00079 1 PITSVEDLAKQT-KIEYGTIRGSSTLAFFKRSGN---PEYSRMWNYMSASPSVFVKSYAE----------GVQRVRV--S 64 (134)
T ss_pred CCCChHHHhhCC-CccceEecCchHHHHHHhCCC---hHHHHHHHHHHhCCCCCCCCHHH----------HHHHHHc--C
Confidence 589999998642 579999999999999988752 33455655441 11123344555 4444543 4
Q ss_pred CcEEEechhhhhhhhhhcccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 KPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
.+|++.|.+.+.|++..+|....++..+..+.++.+ +|+ ++||+.||.++ .+...+|.++
T Consensus 65 ~da~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~k~--~~l~~~vn~~l----~~l~~~G~~~ 125 (134)
T smart00079 65 NYAFLMESTYLDYELSQNCDLMTVGENFGRKGYGIAFPKG--SPLRDDLSRAI----LKLSESGELQ 125 (134)
T ss_pred CCEEEeehHhHHHHHhCCCCeEEcCcccCCCceEEEecCC--CHHHHHHHHHH----HHHHhcCcHH
Confidence 599999999999987655554445555555666665 354 79999999999 7777777664
No 7
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=97.30 E-value=0.00018 Score=51.58 Aligned_cols=58 Identities=19% Similarity=0.416 Sum_probs=49.9
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
.+..++.+++||++.++...| ++..|.+..+|+++.++.+..+.+.+...+++++.++
T Consensus 20 ~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 20 SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999 7899999999999999999999999988888776543
No 8
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=95.44 E-value=0.0075 Score=49.24 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..|++++||. +.++|+++|+....+++.... . .+ +-..+.+.++++++ + .+|
T Consensus 100 ~~~~~~~dl~----~~~i~~~~g~~~~~~l~~~~~-------~---~~--~~~~~~~~~~~~~~----------l--~~g 151 (225)
T PF00497_consen 100 KTIKSLDDLK----GKRIGVVRGSSYADYLKQQYP-------S---NI--NIVEVDSPEEALEA----------L--LSG 151 (225)
T ss_dssp SSHSSGGGGT----TSEEEEETTSHHHHHHHHHTH-------H---TS--EEEEESSHHHHHHH----------H--HTT
T ss_pred ccccchhhhc----CcccccccchhHHHHhhhhcc-------c---hh--hhcccccHHHHHHH----------H--hcC
Confidence 5667777884 358999999998888877521 1 11 11235566665555 3 233
Q ss_pred C-cEEEechhhhhhhhhhcccccCC--CccccccceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 K-PEYKWTVAMSLFSMHTHYRKKSV--PNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~~~~~~--~~~~~~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
. +|++.+...++|.+..+...... +................+.+++.||+++ .+++.+|.++
T Consensus 152 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~i----~~l~~~G~~~ 216 (225)
T PF00497_consen 152 RIDAFIVDESTAEYLLKRHPLENIVVIPPPISPSPVYFAVRKKNPELLEIFNKAI----RELKQSGEIQ 216 (225)
T ss_dssp SSSEEEEEHHHHHHHHHHTTTCEEEEEEEEEEEEEEEEEEETTTHHHHHHHHHHH----HHHHHTTHHH
T ss_pred CeeeeeccchhhhhhhhhcccccccccccccccceeEEeecccccHHHHHHHHHH----HHHHhCcHHH
Confidence 4 79999999999988765421111 1111111222222334689999999999 8888877664
No 9
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=94.34 E-value=0.044 Score=47.74 Aligned_cols=127 Identities=12% Similarity=0.059 Sum_probs=74.8
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
++++.......|++++||.... +.++|+..|+....++++... +. . +-..+.+.+++++.
T Consensus 122 ~~~~~~~~~~~i~~~~dl~~~~-g~~Igv~~g~~~~~~l~~~~~------~~----~--~i~~~~~~~~~i~~------- 181 (275)
T TIGR02995 122 ALLVKKGNPKGLKSYKDIAKNP-DAKIAAPGGGTEEKLAREAGV------KR----E--QIIVVPDGQSGLKM------- 181 (275)
T ss_pred eEEEECCCCCCCCCHHHhccCC-CceEEEeCCcHHHHHHHHcCC------Ch----h--hEEEeCCHHHHHHH-------
Confidence 4666655445689999997532 689999999998888877531 10 0 01123344554444
Q ss_pred ceeecccCCCcEEEechhhhhhhhhhcc--cccCCCcccccc---ce-eccccCCCCcccccccceeeeCccccccCccc
Q psy6615 149 ISAVNVCQGKPEYKWTVAMSLFSMHTHY--RKKSVPNTLVVD---LW-TAGVKGLFSPMRGSINKHYYYSPTEFQDNPKL 222 (227)
Q Consensus 149 i~~v~~~~G~yAFi~es~~leY~~~~~~--~~~~~~~~~~~d---~~-~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~ 222 (227)
|... --+|++.+...+.|.+.... +.+.+. .+... .+ ..........++..+|+++ .++.+|+.+
T Consensus 182 ---L~~g-rvDa~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~n~~l----~~~~~sG~~ 252 (275)
T TIGR02995 182 ---VQDG-RADAYSLTVLTINDLASKAGDPNVEVLA-PFKDAPVRYYGGAAFRPEDKELRDAFNVEL----AKLKESGEF 252 (275)
T ss_pred ---HHcC-CCCEEecChHHHHHHHHhCCCCCceeec-CccCCccccceeEEECCCCHHHHHHHHHHH----HHHHhChHH
Confidence 3222 14899999999988775432 111111 11111 11 1111222568999999999 888888876
Q ss_pred cc
Q psy6615 223 KG 224 (227)
Q Consensus 223 ~~ 224 (227)
+.
T Consensus 253 ~~ 254 (275)
T TIGR02995 253 AK 254 (275)
T ss_pred HH
Confidence 54
No 10
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=93.29 E-value=0.063 Score=47.93 Aligned_cols=133 Identities=7% Similarity=-0.055 Sum_probs=74.8
Q ss_pred hhcceeeEEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhccccccccccccccc
Q psy6615 62 TYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNV 141 (227)
Q Consensus 62 sYTAnLaA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~ 141 (227)
-|.-+-.++++... ..|++++||. +.++|+..|+..+.+++..... .. ..++ -..+.+.+++++.
T Consensus 129 Py~~~~~~lv~r~~--~~i~sl~dL~----Gk~V~v~~gs~~~~~l~~~~~~----~~---~~~~--i~~~~~~~~~l~~ 193 (302)
T PRK10797 129 TIFVVGTRLLTKKG--GDIKDFADLK----GKAVVVTSGTTSEVLLNKLNEE----QK---MNMR--IISAKDHGDSFRT 193 (302)
T ss_pred cEeeccEEEEEECC--CCCCChHHcC----CCEEEEeCCCcHHHHHHHHhhh----cC---CceE--EEEeCCHHHHHHH
Confidence 45444456666554 4699999996 3589999999988887654210 00 0011 1123344554444
Q ss_pred ccCCcccceeecccCCCcEEEechhhhhhhhhhcc---cccCCCccccccceeccccCCCCcccccccceeeeCcccccc
Q psy6615 142 VHPDIPMISAVNVCQGKPEYKWTVAMSLFSMHTHY---RKKSVPNTLVVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQD 218 (227)
Q Consensus 142 v~~d~pgi~~v~~~~G~yAFi~es~~leY~~~~~~---~~~~~~~~~~~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~ 218 (227)
|... .-+|++.|..++.+.+..+. .++.++..+....+++..+.-...++..||+.+ .+.++
T Consensus 194 ----------L~~G-rvDa~i~d~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~a~~k~~~~L~~~in~~L----~~l~~ 258 (302)
T PRK10797 194 ----------LESG-RAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTI----AQAQT 258 (302)
T ss_pred ----------HHcC-CceEEEccHHHHHHHHHcCCCCcceEECCccCCcCceeEEEeCCCHHHHHHHHHHH----HHHHh
Confidence 3222 23899999887765433221 122233333344444443222335899999988 77777
Q ss_pred Cccccc
Q psy6615 219 NPKLKG 224 (227)
Q Consensus 219 ~~~~~~ 224 (227)
+|.++.
T Consensus 259 ~G~l~~ 264 (302)
T PRK10797 259 SGEAEK 264 (302)
T ss_pred CchHHH
Confidence 776653
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=91.98 E-value=0.1 Score=53.03 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 20 FSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 20 l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
...|+||++.+|+..| ++..|.+..+|+++.+|+++++++.+...++++..+..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448999999999999 78899999999999999999999999999999887644
No 12
>KOG1419|consensus
Probab=91.63 E-value=0.14 Score=49.61 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=53.2
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
+..-.++.+++||..-+++..| +++.|..|.||+++++..|+++-+.+.=.+-|.+=++..
T Consensus 264 n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 264 NDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred cccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 5566778999999999999999 799999999999999999999999888888887755543
No 13
>KOG3713|consensus
Probab=89.06 E-value=0.2 Score=47.79 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=41.2
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhh
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVT 61 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilva 61 (227)
+.+-.++.-++||++-+|+..| ++..|++++||+++..-.+..++++|
T Consensus 372 ~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlA 420 (477)
T KOG3713|consen 372 DTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLA 420 (477)
T ss_pred CCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhh
Confidence 4556678999999999999999 79999999999999888777776654
No 14
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=88.95 E-value=0.23 Score=41.88 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=66.2
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..+++++||. +.++|+..|+....++++.-. . .+. -..+.+.++++++ +. +|
T Consensus 121 ~~~~~~~dl~----g~~i~~~~g~~~~~~l~~~~~-------~---~~~--~~~~~s~~~~~~~----------L~--~g 172 (250)
T TIGR01096 121 DLAKTLEDLD----GKTVGVQSGTTHEQYLKDYFK-------P---GVD--IVEYDSYDNANMD----------LK--AG 172 (250)
T ss_pred CcCCChHHcC----CCEEEEecCchHHHHHHHhcc-------C---CcE--EEEcCCHHHHHHH----------HH--cC
Confidence 3457899996 358999999998888876521 0 000 1123344554444 32 23
Q ss_pred C-cEEEechhhhhhhhhhccc---ccCCCcccccc-c----eeccccCCCCcccccccceeeeCccccccCccccc
Q psy6615 158 K-PEYKWTVAMSLFSMHTHYR---KKSVPNTLVVD-L----WTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKG 224 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~~---~~~~~~~~~~d-~----~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~~ 224 (227)
+ ++++.+...+.+.+..... ....+..+... + +..+...-...++..||+++ .+.+++|.++.
T Consensus 173 ~vD~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ln~~l----~~l~~~g~~~~ 244 (250)
T TIGR01096 173 RIDAVFTDASVLAEGFLKPPNGKDFKFVGPSVTDEKYFGDGYGIGLRKGDTELKAAFNKAL----AAIRADGTYQK 244 (250)
T ss_pred CCCEEEeCHHHHHHHHHhCCCCCceEEeccccccccccCCceEEEEeCCCHHHHHHHHHHH----HHHHHCCcHHH
Confidence 4 8999999998887653221 11222222111 1 22222222457899999999 77888877653
No 15
>PRK11260 cystine transporter subunit; Provisional
Probab=88.13 E-value=0.58 Score=40.34 Aligned_cols=121 Identities=12% Similarity=-0.040 Sum_probs=67.3
Q ss_pred EeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccc
Q psy6615 70 FLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMI 149 (227)
Q Consensus 70 ~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi 149 (227)
+++.......|++++||. +.++|+..|+....++++... .- .+ ..+.+..+++++
T Consensus 131 ~~~~~~~~~~~~~~~dL~----g~~Igv~~G~~~~~~l~~~~~----~~-----~i----~~~~~~~~~l~~-------- 185 (266)
T PRK11260 131 ALVKKGNEGTIKTAADLK----GKKVGVGLGTNYEQWLRQNVQ----GV-----DV----RTYDDDPTKYQD-------- 185 (266)
T ss_pred EEEEcCCcCCCCCHHHcC----CCEEEEecCCcHHHHHHHhCC----CC-----ce----EecCCHHHHHHH--------
Confidence 333333345789999995 358999999988888765421 00 00 112233343333
Q ss_pred eeecccCCCcEEEechhhhhhhhhhccc-ccCCCcccc-ccceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 150 SAVNVCQGKPEYKWTVAMSLFSMHTHYR-KKSVPNTLV-VDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 150 ~~v~~~~G~yAFi~es~~leY~~~~~~~-~~~~~~~~~-~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+... .-++++.+.....+.+..... .+..+..+. .++..+..++ ...++..||+++ .+.+.++.++
T Consensus 186 --L~~G-rvD~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~l~~~ln~~l----~~~~~~g~~~ 253 (266)
T PRK11260 186 --LRVG-RIDAILVDRLAALDLVKKTNDTLAVAGEAFSRQESGVALRKG-NPDLLKAVNQAI----AEMQKDGTLK 253 (266)
T ss_pred --HHcC-CCCEEEechHHHHHHHHhCCCcceecCCccccCceEEEEeCC-CHHHHHHHHHHH----HHHHhCCcHH
Confidence 2221 248888888887777654321 111111111 1333333344 456999999998 7777777654
No 16
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=88.05 E-value=0.45 Score=40.42 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=64.2
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.++++++||.. .++|++.|++...+++.... . ..+ ....+..+++++ + .+|
T Consensus 121 ~~~~~~~dL~g----~~I~v~~g~~~~~~l~~~~~-------~--~~i----~~~~~~~~~~~~----------L--~~g 171 (247)
T PRK09495 121 NDIKSVKDLDG----KVVAVKSGTGSVDYAKANIK-------T--KDL----RQFPNIDNAYLE----------L--GTG 171 (247)
T ss_pred CCCCChHHhCC----CEEEEecCchHHHHHHhcCC-------C--Cce----EEcCCHHHHHHH----------H--HcC
Confidence 46999999963 47999999888777765421 0 001 112233343333 2 234
Q ss_pred C-cEEEechhhhhhhhhhcc--cccCCCcccccccee-ccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 K-PEYKWTVAMSLFSMHTHY--RKKSVPNTLVVDLWT-AGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+ +|++.+....+|.+.... +.+..+.......+. +..++ +.+++.||+++ .+-++++.++
T Consensus 172 rvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~l~~~~n~al----~~~~~~g~~~ 235 (247)
T PRK09495 172 RADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKG--SELREKVNGAL----KTLKENGTYA 235 (247)
T ss_pred ceeEEEeChHHHHHHHHhCCCCceEEecCcccccceEEEEcCc--HHHHHHHHHHH----HHHHHCCcHH
Confidence 4 788999888888775432 122222222222232 33444 38999999998 6666666554
No 17
>KOG1418|consensus
Probab=86.83 E-value=0.25 Score=44.68 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=51.0
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
.....++.+++.|++++++.-| +...|++..||+.+++|.++.+-++...-+++.-+|+.
T Consensus 110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999 68899999999999999999987777666666655543
No 18
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.05 E-value=0.57 Score=43.87 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=45.1
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeE
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVA 69 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA 69 (227)
....++.+++||++.++...| ++..|.+..+|+++.++.++.+.+.+...+.++.
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999999988 6888999999999999999887766555444444
No 19
>PRK15007 putative ABC transporter arginine-biding protein; Provisional
Probab=86.00 E-value=0.64 Score=39.12 Aligned_cols=112 Identities=12% Similarity=0.038 Sum_probs=62.6
Q ss_pred CCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCCC
Q psy6615 79 PVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGK 158 (227)
Q Consensus 79 ~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G~ 158 (227)
.+++++||. +.++|+..|+....++++.... . . .....+.++++.+ + .+|.
T Consensus 117 ~~~~~~dL~----g~~Igv~~g~~~~~~l~~~~~~----~-------~--~~~~~~~~~~~~~----------L--~~gr 167 (243)
T PRK15007 117 KYTSVDQLK----GKKVGVQNGTTHQKFIMDKHPE----I-------T--TVPYDSYQNAKLD----------L--QNGR 167 (243)
T ss_pred CCCCHHHhC----CCeEEEecCcHHHHHHHHhCCC----C-------e--EEEcCCHHHHHHH----------H--HcCC
Confidence 589999995 4589999999888887764210 0 0 0112233443333 2 2234
Q ss_pred -cEEEechhhhhhhhhhcccccCCCccccc------cceeccccCCCCcccccccceeeeCccccccCccccc
Q psy6615 159 -PEYKWTVAMSLFSMHTHYRKKSVPNTLVV------DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKG 224 (227)
Q Consensus 159 -yAFi~es~~leY~~~~~~~~~~~~~~~~~------d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~~ 224 (227)
+|++.+...+.|.+..+.+...++..+.. ++..+..++ ..+++..||+.+ ...++++.++.
T Consensus 168 vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ln~~l----~~l~~~g~~~~ 235 (243)
T PRK15007 168 IDAVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQG-NTELQQKLNTAL----EKVKKDGTYET 235 (243)
T ss_pred CCEEEeCHHHHHHHHhcCCCceeecCcccccccCCcceEEEEeCC-CHHHHHHHHHHH----HHHHhCCcHHH
Confidence 78898888877765433222211111111 111222232 458999999998 77777765543
No 20
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=85.19 E-value=0.86 Score=43.43 Aligned_cols=119 Identities=11% Similarity=-0.054 Sum_probs=63.7
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccC
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQ 156 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~ 156 (227)
...|++++||. +.++|+.+|++.+..++..... +. .+.-......+.++++++ |. +
T Consensus 138 ~~~i~~l~dL~----Gk~I~V~~gS~~~~~L~~l~~~----~p----~i~~~~~~~~s~~e~l~a----------L~--~ 193 (482)
T PRK10859 138 QPRPRSLGDLK----GGTLTVAAGSSHVETLQELKKK----YP----ELSWEESDDKDSEELLEQ----------VA--E 193 (482)
T ss_pred CCCCCCHHHhC----CCeEEEECCCcHHHHHHHHHHh----CC----CceEEecCCCCHHHHHHH----------HH--C
Confidence 36799999996 3589999999988877653210 10 010000112345554444 32 2
Q ss_pred CC-cEEEechhhhhhhhhhcccccCCCccc-cccceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 157 GK-PEYKWTVAMSLFSMHTHYRKKSVPNTL-VVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 157 G~-yAFi~es~~leY~~~~~~~~~~~~~~~-~~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|. +|++.|...+.+.......+....... ..++.-+..++....++..||+.+ .+.++++.++
T Consensus 194 G~iDa~v~d~~~~~~~~~~~p~l~v~~~l~~~~~~~~av~k~~~~~L~~~ln~~L----~~i~~~G~l~ 258 (482)
T PRK10859 194 GKIDYTIADSVEISLNQRYHPELAVAFDLTDEQPVAWALPPSGDDSLYAALLDFF----NQIKEDGTLA 258 (482)
T ss_pred CCCCEEEECcHHHHHHHHhCCCceeeeecCCCceeEEEEeCCCCHHHHHHHHHHH----HHhhcCCHHH
Confidence 33 788888877765332211111110010 012222334433446889999888 7777776543
No 21
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=83.59 E-value=0.79 Score=36.19 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=62.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.++++++||.. .++|+..++....++++... . .....+.+.++.+++ +...+
T Consensus 95 ~~~~~~~dl~g----~~i~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~----------l~~g~- 146 (218)
T cd00134 95 SPIKSVKDLKG----KKVAVQKGSTAEKYLKKALP----------E---AKVVSYDDNAEALAA----------LENGR- 146 (218)
T ss_pred CCCCChHHhCC----CEEEEEcCchHHHHHHHhCC----------c---ccEEEeCCHHHHHHH----------HHcCC-
Confidence 56779999963 57888888887777776531 0 001123333443333 33222
Q ss_pred CcEEEechhhhhhhhhhc-ccccCCCcc-ccccceeccccCCCC-cccccccceeeeCccccccCccccc
Q psy6615 158 KPEYKWTVAMSLFSMHTH-YRKKSVPNT-LVVDLWTAGVKGLFS-PMRGSINKHYYYSPTEFQDNPKLKG 224 (227)
Q Consensus 158 ~yAFi~es~~leY~~~~~-~~~~~~~~~-~~~d~~~~~~~~~~s-p~r~~i~~~~~~~~~~~~~~~~~~~ 224 (227)
.+|++.+.....+.+... ..++.++.. .......+..+...+ .+...||+.+ .+.++++.++.
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l----~~~~~~g~~~~ 212 (218)
T cd00134 147 ADAVIVDEIALAALLKKHPPELKIVGPSIDLEPLGFGVAVGKDNKELLDAVNKAL----KELRADGELKK 212 (218)
T ss_pred ccEEEeccHHHHHHHHhcCCCcEEeccccCCCccceEEEEcCCCHHHHHHHHHHH----HHHHhCccHHH
Confidence 378888887777765432 223323322 111222222233333 5788888888 66666666543
No 22
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=78.88 E-value=3.1 Score=36.01 Aligned_cols=104 Identities=7% Similarity=0.016 Sum_probs=56.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.+|++++||. +.++|+..|+..+..+.+... +. .....-....+..++++. +. .|
T Consensus 138 ~~~~s~~dL~----g~~V~v~~gs~~~~~l~~~~~-------~~--~~~~~~~~~~~~~~~~~~----------l~--~G 192 (259)
T PRK11917 138 KNYKSLADMK----GANIGVAQAATTKKAIGEAAK-------KI--GIDVKFSEFPDYPSIKAA----------LD--AK 192 (259)
T ss_pred CCCCCHHHhC----CCeEEEecCCcHHHHHHHhhH-------hc--CCceeEEecCCHHHHHHH----------HH--cC
Confidence 4699999996 458999999988877765421 00 000000112233443333 22 24
Q ss_pred C-cEEEechhhhhhhhhhcccccCCCccccccceecc-ccCCCCccccccccee
Q psy6615 158 K-PEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHY 209 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~ 209 (227)
. +|++.+..++.++...+. ..++..+....++.+ .|+ ..-++..||+.+
T Consensus 193 rvDa~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~k~-~~~l~~~ln~~l 243 (259)
T PRK11917 193 RVDAFSVDKSILLGYVDDKS--EILPDSFEPQSYGIVTKKD-DPAFAKYVDDFV 243 (259)
T ss_pred CCcEEEecHHHHHHhhhcCC--eecCCcCCCCceEEEEeCC-CHHHHHHHHHHH
Confidence 4 789988887666443222 223333333334443 334 345788888877
No 23
>KOG0498|consensus
Probab=78.67 E-value=1.7 Score=43.74 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 20 FSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 20 l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
+.-++||.+.+|+.-| +...|...+=.+.+++-+++.+++.|.-.+|+++++..
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 4668999999999988 47789999999999999999999999999999999865
No 24
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=74.59 E-value=6.8 Score=32.52 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=32.5
Q ss_pred hhhhcceeeEEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHh
Q psy6615 60 VTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTA 110 (227)
Q Consensus 60 vasYTAnLaA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s 110 (227)
...|...=..+++.+.....+++++|+.. .+.++|+..|+..+.+++..
T Consensus 74 s~py~~~~~~lv~~~~~~~~~~~~~d~~l--~g~~V~v~~g~~~~~~l~~~ 122 (232)
T TIGR03871 74 TRPYYRSTYVFVTRKDSLLDVKSLDDPRL--KKLRIGVFAGTPPAHWLARH 122 (232)
T ss_pred cCCcEeeeEEEEEeCCCcccccchhhhhh--cCCeEEEEcCChHHHHHHhc
Confidence 33444333455555553467899998321 14689999999999988764
No 25
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=70.78 E-value=3.8 Score=35.10 Aligned_cols=113 Identities=9% Similarity=-0.050 Sum_probs=57.9
Q ss_pred CCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCCCcE
Q psy6615 81 TNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGKPE 160 (227)
Q Consensus 81 ~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G~yA 160 (227)
.+++||. +.++|+.+|+..+.++...-. . ..+. .....+.++++++ |..+ .-+|
T Consensus 126 ~~~~dl~----g~~Igv~~gs~~~~~~~~~~~-------~--~~~~--~~~~~~~~~~~~~----------l~~g-riDa 179 (260)
T PRK15010 126 PTLDSLK----GKHVGVLQGSTQEAYANETWR-------S--KGVD--VVAYANQDLVYSD----------LAAG-RLDA 179 (260)
T ss_pred CChhHcC----CCEEEEecCchHHHHHHHhcc-------c--CCce--EEecCCHHHHHHH----------HHcC-CccE
Confidence 4789995 458999999987776654311 0 0000 0112233443333 3221 2478
Q ss_pred EEechhhhhhhhhhcc---cccCCCccccccce-----eccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 161 YKWTVAMSLFSMHTHY---RKKSVPNTLVVDLW-----TAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 161 Fi~es~~leY~~~~~~---~~~~~~~~~~~d~~-----~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
++.+.....+.+..+. +....+..+....+ +.+.......++..+|+.+ .+.+++|.++
T Consensus 180 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~~ln~~l----~~l~~~G~~~ 246 (260)
T PRK15010 180 ALQDEVAASEGFLKQPAGKDFAFAGPSVKDKKYFGDGTGVGLRKDDAELTAAFNKAL----GELRQDGTYD 246 (260)
T ss_pred EEeCcHHHHHHHHhCCCCCceEEecCccccccccCCceEEEEeCCCHHHHHHHHHHH----HHHHhCCcHH
Confidence 8888776654221111 11111111111122 1122233557899999998 7888888765
No 26
>KOG1545|consensus
Probab=65.52 E-value=0.87 Score=42.37 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=38.7
Q ss_pred ccCCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHH
Q psy6615 12 REQSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLV 58 (227)
Q Consensus 12 ~~~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~li 58 (227)
++++.-.++.+++||+..+|+..| ++..|.+..|+|+...-.++.++
T Consensus 386 e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVL 433 (507)
T KOG1545|consen 386 EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVL 433 (507)
T ss_pred CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhhe
Confidence 346777789999999999999999 68899999999998765555443
No 27
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
Probab=64.88 E-value=6.3 Score=33.25 Aligned_cols=130 Identities=13% Similarity=0.061 Sum_probs=68.6
Q ss_pred hhhhcceeeEEeecCCCCCCCCCHHHHhhCCCceeEEEecCch--HHHHHHHhccCCCchhhhhhhhhhccccccccccc
Q psy6615 60 VTTYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFST--LHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIV 137 (227)
Q Consensus 60 vasYTAnLaA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~--~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~e 137 (227)
..-|.-.=.++++.......|.+++||.. .++|+..|+. .......... .. ......+..+
T Consensus 118 s~py~~~~~~~~~~~~~~~~~~~~~DL~g----k~v~v~~gt~~~~~~~~~~~~~-----------~~--~~~~~~~~~~ 180 (275)
T COG0834 118 SDPYYYSGQVLLVKKDSDIGIKSLEDLKG----KKVGVQLGTTDEAEEKAKKPGP-----------NA--KIVAYDSNAE 180 (275)
T ss_pred cccccccCeEEEEECCCCcCcCCHHHhCC----CEEEEEcCcchhHHHHHhhccC-----------Cc--eEEeeCCHHH
Confidence 34444444555555544455889999973 6899999999 2222222110 00 0111222233
Q ss_pred ccccccCCcccceeecccCCC-cEEEechhhhhhh--hhhccccc-CCCcccc-ccceecc-ccCCC-Ccccccccceee
Q psy6615 138 GLNVVHPDIPMISAVNVCQGK-PEYKWTVAMSLFS--MHTHYRKK-SVPNTLV-VDLWTAG-VKGLF-SPMRGSINKHYY 210 (227)
Q Consensus 138 gv~~v~~d~pgi~~v~~~~G~-yAFi~es~~leY~--~~~~~~~~-~~~~~~~-~d~~~~~-~~~~~-sp~r~~i~~~~~ 210 (227)
.++.+. +|. +|++.|...+.+. ........ ....... .+.++.+ .++ . ..+|+.||+.+
T Consensus 181 ----------~~~al~--~Gr~Da~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~in~~l- 246 (275)
T COG0834 181 ----------ALLALK--NGRADAVVSDSAVLAGLKLLKKNPGLYVLLVFPGLSVEYLGIALRKG-DDPELLEAVNKAL- 246 (275)
T ss_pred ----------HHHHHH--cCCccEEEcchHhhhhhhhhhcCCCCceeeeccCCCcceeEEEeccC-CcHHHHHHHHHHH-
Confidence 233332 344 8999999999884 11111111 1111111 1334433 344 1 47899999998
Q ss_pred eCccccccCcccc
Q psy6615 211 YSPTEFQDNPKLK 223 (227)
Q Consensus 211 ~~~~~~~~~~~~~ 223 (227)
.+...++.++
T Consensus 247 ---~~l~~~G~~~ 256 (275)
T COG0834 247 ---KELKADGTLQ 256 (275)
T ss_pred ---HHHHhCccHH
Confidence 7787777654
No 28
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=64.52 E-value=6.5 Score=30.65 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHh
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTA 110 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s 110 (227)
..+|++++||. +.++|+..++....+++..
T Consensus 95 ~~~~~~~~dL~----g~~i~~~~g~~~~~~~~~~ 124 (219)
T smart00062 95 DSPIKSLEDLK----GKKVAVVAGTTGEELLKKL 124 (219)
T ss_pred CCCCCChHHhC----CCEEEEecCccHHHHHHHh
Confidence 35699999995 3578999888877777654
No 29
>TIGR02285 conserved hypothetical protein. Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown.
Probab=61.64 E-value=2.7 Score=36.24 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=36.0
Q ss_pred cEEEechhhhhhhhhhccc----ccCCCcccc---ccceeccccCC-CCcccccccceeeeCccccccCccccc
Q psy6615 159 PEYKWTVAMSLFSMHTHYR----KKSVPNTLV---VDLWTAGVKGL-FSPMRGSINKHYYYSPTEFQDNPKLKG 224 (227)
Q Consensus 159 yAFi~es~~leY~~~~~~~----~~~~~~~~~---~d~~~~~~~~~-~sp~r~~i~~~~~~~~~~~~~~~~~~~ 224 (227)
+|++.+..+..|.+..+.. .+..+.... ...+.+..++- ...++..||+++ .+..+||.++.
T Consensus 185 D~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~l~~~in~~L----~~l~~dG~~~~ 254 (268)
T TIGR02285 185 NYTLAYPPEKTYYEELNNGALPPLKFLPVAGMPAHISVWVACPKTEWGRKVIADIDQAL----SELNVDPKYYK 254 (268)
T ss_pred cEEEeCcHHHHHHHHhccCCcCCeeEeecCCCccceEEEEEeCCCHHHHHHHHHHHHHH----HHHhhCHHHHH
Confidence 8899999988887753211 111111110 11223333432 235899999999 88888877653
No 30
>KOG3684|consensus
Probab=60.81 E-value=8.4 Score=36.82 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=41.3
Q ss_pred CccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 16 GFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 16 ~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
..-.+.|++|+...+|+..| ++..|....||.++.+ +=|+.+..||-|.|.+.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~----tGivGa~~sallvAvis 337 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALL----TGIVGAGCSSLLVAVIA 337 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHH----hhhhhhhHHHHHHHHHH
Confidence 44568999999999999999 7899999999999765 44555555666666543
No 31
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=49.69 E-value=10 Score=39.73 Aligned_cols=68 Identities=4% Similarity=-0.003 Sum_probs=47.1
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..+++++||. +.++|+++|+..+.+++... .. . .-..+.+..++++. | .+|
T Consensus 154 ~~~~~~~~l~----~~~i~~~~g~~~~~~~~~~~-------p~----~--~i~~~~s~~~al~a----------v--~~G 204 (1197)
T PRK09959 154 DSMRPLTSSK----PVNIARVANYPPDEVIHQSF-------PK----A--TIISFTNLYQALAS----------V--SAG 204 (1197)
T ss_pred CCCCCccccc----CeEEEEeCCCCCHHHHHHhC-------CC----C--EEEeCCCHHHHHHH----------H--HcC
Confidence 4678888884 47899999998888887652 11 1 11345566775555 3 335
Q ss_pred C-cEEEechhhhhhhhhh
Q psy6615 158 K-PEYKWTVAMSLFSMHT 174 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~ 174 (227)
+ +||+.+..++.|.+..
T Consensus 205 ~~Da~i~~~~~~~~~i~~ 222 (1197)
T PRK09959 205 QNDYFIGSNIITSSMISR 222 (1197)
T ss_pred CCCEEEccHHHHHHHHhc
Confidence 5 9999999999998764
No 32
>KOG1420|consensus
Probab=46.25 E-value=4.5 Score=39.95 Aligned_cols=58 Identities=17% Similarity=0.378 Sum_probs=49.5
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEe
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFL 71 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~L 71 (227)
+....+.+++++|...+|...| ++..-+...||+.+.++.++.|.+.++|...++-.+
T Consensus 283 n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiieli 341 (1103)
T KOG1420|consen 283 NNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELI 341 (1103)
T ss_pred CcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4567788999999999998888 577789999999999999999999999987665444
No 33
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=45.41 E-value=16 Score=29.97 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=29.1
Q ss_pred hhcceeeEEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHh
Q psy6615 62 TYCGNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTA 110 (227)
Q Consensus 62 sYTAnLaA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s 110 (227)
.+......+++.+. +.|+++.||.. .++|+..++..+.+++.-
T Consensus 69 ~~~~~~~~l~~~~~--s~i~~~~DLkG----K~i~v~~~s~~~~~~~~~ 111 (216)
T PF09084_consen 69 SYQSSPNALVVRKD--SGIKSPADLKG----KKIGVSRGSSSEYFLRAL 111 (216)
T ss_dssp EEEECCEEEEEETT--TS-SSGGGGTT----SEEEESTTSHHHHHHHHH
T ss_pred ecCCCceEEEEecc--CCCCCHHHhCC----CEEEEecCcchhHHHHHH
Confidence 34445556666654 56999999974 489999987777766543
No 34
>KOG4390|consensus
Probab=32.84 E-value=6.8 Score=36.97 Aligned_cols=88 Identities=19% Similarity=0.353 Sum_probs=53.7
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCC-------CCHHH
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPV-------TNVNE 85 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~~~~I-------~sl~D 85 (227)
..+--++..++||.+.+|..-| ++..|+.+.|+|+..+--+ ++.|.--|.+|..-+-. +-.+.
T Consensus 351 at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSL---------SGVLVIALPVPvIVSNFSRIYHQNQRADK 421 (632)
T KOG4390|consen 351 ATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSL---------SGVLVIALPVPVIVSNFSRIYHQNQRADK 421 (632)
T ss_pred ccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcc---------cceEEEeccccEEEechhHHHhhhhhhhH
Confidence 3455568899999999999999 6889999999999776443 34444444444221111 11111
Q ss_pred HhhCCCce---eEEEecCchHHHHHHHhc
Q psy6615 86 LLENKWRL---SWGMSEFSTLHTTLQTAR 111 (227)
Q Consensus 86 L~~q~~~i---~~G~~~gs~~~~~f~~s~ 111 (227)
-..|+ +. ++-+.+.+++-.|++...
T Consensus 422 RrAQk-KaRLARIR~aKsgs~nA~~~~Kr 449 (632)
T KOG4390|consen 422 RRAQK-KARLARIRLAKSGSTNAYLQSKR 449 (632)
T ss_pred HHHHH-HhhhhheeehhcccchHHHhhhh
Confidence 12222 22 455666777777776554
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=28.78 E-value=67 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.397 Sum_probs=35.1
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCC-----CCchhHHHHHHHHH-HHHHhhhhcce
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPE-----ADSGRLVIGTWWLF-VLVIVTTYCGN 66 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Pr-----s~s~Riv~~~W~lf-~lilvasYTAn 66 (227)
...-++..+++..+.++++.| .+..|. +..+.+...++.++ ++++.+...|+
T Consensus 141 ~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 141 ENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 344567889999999998887 444554 77777777455554 45666665554
No 36
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=25.34 E-value=40 Score=30.64 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=22.3
Q ss_pred CCCHHHHhhCCCceeEEEecCchHHHHHHHh
Q psy6615 80 VTNVNELLENKWRLSWGMSEFSTLHTTLQTA 110 (227)
Q Consensus 80 I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s 110 (227)
|++++||.. .++|+.+++..+.++...
T Consensus 98 i~svaDLKG----KkIav~~gs~~~~ll~~a 124 (328)
T TIGR03427 98 GKSLADLKG----QKVNLVELSVSHYLLARA 124 (328)
T ss_pred CCCHHHcCC----CEEeccCCChHHHHHHHH
Confidence 899999973 589999999888776654
No 37
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=23.96 E-value=35 Score=17.78 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=7.9
Q ss_pred CCCccccccc
Q psy6615 197 LFSPMRGSIN 206 (227)
Q Consensus 197 ~~sp~r~~i~ 206 (227)
.|+|+|++.+
T Consensus 7 gftpfrgkfh 16 (19)
T PF06753_consen 7 GFTPFRGKFH 16 (19)
T ss_pred CCCccccccc
Confidence 4889999865
No 38
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ. This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in
Probab=23.77 E-value=1.2e+02 Score=25.55 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=33.9
Q ss_pred hhhhcceeeEEeecCCCCCCCCCHHH--HhhCCCce-eEEEecCchHHHHHHHh
Q psy6615 60 VTTYCGNLVAFLTFPMMDTPVTNVNE--LLENKWRL-SWGMSEFSTLHTTLQTA 110 (227)
Q Consensus 60 vasYTAnLaA~Lt~~~~~~~I~sl~D--L~~q~~~i-~~G~~~gs~~~~~f~~s 110 (227)
..-|-.+-.++++.......|++++| |. +. ++|+..||..+.+++..
T Consensus 75 S~PY~~~~~~~v~~k~~~~~~~~~~d~~L~----g~~~vgv~~gs~~~~~l~~~ 124 (246)
T TIGR03870 75 TKPYYRSSYVFLTRKDRNLDIKSWNDPRLK----KVSKIGVIFGSPAETMLKQI 124 (246)
T ss_pred ccCcEEeeeEEEEeCCCCCCCCCccchhhc----cCceEEEecCChHHHHHHhc
Confidence 44565555566666654456899876 54 45 89999999999988875
No 39
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=22.87 E-value=70 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=21.6
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHH
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQ 108 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~ 108 (227)
...|++++||.. .++|+..+++.+.++.
T Consensus 89 ~s~I~s~~DLkG----K~Igv~~~s~~~~~l~ 116 (300)
T TIGR01729 89 GSGIEKPEDLKG----KNVAVPFVSTTHYSLL 116 (300)
T ss_pred CCCCCChhHcCC----CEEEeCCCCcHHHHHH
Confidence 467999999973 4789988887776554
No 40
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=21.38 E-value=22 Score=27.20 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhhcceeeEEeecCCCCCCCCCHHHHhh
Q psy6615 48 VIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLE 88 (227)
Q Consensus 48 v~~~W~lf~lilvasYTAnLaA~Lt~~~~~~~I~sl~DL~~ 88 (227)
+....--|.+++-.+-.+.++|+|+.+ +|++.+.||++
T Consensus 4 i~~ffiA~GVvlGGsliGglga~l~~~---pPl~~m~~lA~ 41 (102)
T PF14034_consen 4 ILDFFIAFGVVLGGSLIGGLGAFLTGQ---PPLKTMLDLAN 41 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHH
Confidence 344444567899999999999999986 78999999986
Done!