Query psy6615
Match_columns 227
No_of_seqs 179 out of 799
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:39:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 99.9 3.7E-29 1.3E-33 244.2 -1.1 201 2-222 537-750 (823)
2 1yae_A Glutamate receptor, ion 98.4 6.7E-08 2.3E-12 83.7 1.4 124 78-223 153-279 (312)
3 3g3k_A Glutamate receptor, ion 98.4 2.7E-07 9.2E-12 76.8 4.4 124 78-223 119-245 (259)
4 1pb7_A N-methyl-D-aspartate re 98.1 2.1E-06 7.2E-11 73.9 4.0 121 78-223 154-278 (292)
5 2rc8_A Glutamate [NMDA] recept 98.0 3.3E-06 1.1E-10 72.5 3.8 121 77-223 153-280 (294)
6 2ih3_C Voltage-gated potassium 97.6 2.4E-05 8.2E-10 60.1 2.8 61 14-74 56-117 (122)
7 1mqi_A Glutamate receptor 2; G 97.6 4.7E-05 1.6E-09 63.2 4.7 126 78-223 119-248 (263)
8 4h33_A LMO2059 protein; bilaye 97.6 3.4E-05 1.2E-09 60.4 3.5 59 16-74 40-99 (137)
9 2k1e_A Water soluble analogue 97.4 2.2E-05 7.7E-10 58.4 0.4 61 14-74 35-96 (103)
10 2a9h_A Voltage-gated potassium 97.4 9.5E-05 3.2E-09 59.2 3.2 62 14-75 79-141 (155)
11 3eff_K Voltage-gated potassium 97.4 0.00012 4E-09 57.1 3.6 59 14-72 35-94 (139)
12 3pjs_K KCSA, voltage-gated pot 97.3 6.2E-05 2.1E-09 60.6 1.7 61 14-74 62-123 (166)
13 2q67_A Potassium channel prote 97.1 0.00025 8.5E-09 53.8 2.7 57 18-74 48-105 (114)
14 2a5s_A N-methyl-D-aspartate re 97.1 0.00021 7.1E-09 60.8 2.4 119 78-223 142-271 (284)
15 3ouf_A Potassium channel prote 97.0 0.00023 7.9E-09 52.4 2.1 58 17-74 30-88 (97)
16 3ldc_A Calcium-gated potassium 97.0 0.00031 1.1E-08 50.1 2.4 53 18-70 27-80 (82)
17 2v3u_A Glutamate receptor delt 96.9 0.00054 1.8E-08 56.3 3.2 127 78-223 115-250 (265)
18 3vou_A ION transport 2 domain 96.7 0.001 3.5E-08 52.3 3.7 55 18-72 51-106 (148)
19 1orq_C Potassium channel; volt 96.5 0.0012 4.1E-08 54.7 3.1 60 14-73 160-220 (223)
20 4gvo_A LMO2349 protein; struct 96.2 0.0014 4.7E-08 54.0 1.3 131 65-223 95-227 (243)
21 1xl4_A Inward rectifier potass 95.8 0.0042 1.4E-07 54.7 2.7 62 14-75 77-139 (301)
22 3um7_A Potassium channel subfa 95.7 0.0055 1.9E-07 54.2 3.4 58 15-72 111-169 (309)
23 2qks_A KIR3.1-prokaryotic KIR 95.7 0.0043 1.5E-07 55.1 2.6 58 18-75 77-135 (321)
24 1ii5_A SLR1257 protein; membra 95.6 0.0087 3E-07 47.6 3.9 118 69-223 97-218 (233)
25 1p7b_A Integral membrane chann 95.6 0.0036 1.2E-07 55.9 1.6 61 16-76 93-154 (333)
26 1lnq_A MTHK channels, potassiu 95.5 0.0022 7.7E-08 56.2 0.0 58 18-75 44-102 (336)
27 3beh_A MLL3241 protein; transm 95.4 0.0083 2.8E-07 52.9 3.2 56 18-73 160-216 (355)
28 3kbr_A Cyclohexadienyl dehydra 95.3 0.0052 1.8E-07 49.5 1.6 122 69-223 104-229 (239)
29 4h5g_A Amino acid ABC superfam 95.2 0.0095 3.3E-07 48.8 2.9 121 68-223 103-229 (243)
30 3kzg_A Arginine 3RD transport 95.2 0.0048 1.6E-07 49.9 1.1 112 78-223 100-222 (237)
31 4f3p_A Glutamine-binding perip 95.2 0.0043 1.5E-07 50.6 0.7 112 77-223 119-234 (249)
32 3del_B Arginine binding protei 95.2 0.0071 2.4E-07 48.8 2.0 112 78-224 108-225 (242)
33 3hv1_A Polar amino acid ABC up 95.2 0.004 1.4E-07 51.4 0.4 127 69-223 110-240 (268)
34 4gx0_A TRKA domain protein; me 95.1 0.0079 2.7E-07 56.5 2.3 57 15-71 47-105 (565)
35 3ukm_A Potassium channel subfa 94.9 0.019 6.4E-07 50.1 4.1 59 14-72 88-147 (280)
36 2y7i_A STM4351; arginine-bindi 94.9 0.016 5.4E-07 46.1 3.2 109 80-223 104-220 (229)
37 3k4u_A Binding component of AB 94.8 0.011 3.7E-07 48.0 2.0 123 68-223 93-220 (245)
38 4i62_A Amino acid ABC transpor 94.7 0.013 4.3E-07 47.9 2.3 123 69-224 131-257 (269)
39 3ukm_A Potassium channel subfa 94.7 0.0092 3.1E-07 52.1 1.5 70 17-86 199-276 (280)
40 2nr1_A NR1 M2, M2; receptor, s 94.5 0.01 3.5E-07 33.3 0.7 22 14-35 3-24 (27)
41 2r9r_B Paddle chimera voltage 94.1 0.033 1.1E-06 52.3 3.9 58 15-72 371-429 (514)
42 4eq9_A ABC transporter substra 94.1 0.013 4.4E-07 47.1 0.9 119 77-223 104-227 (246)
43 3h7m_A Sensor protein; histidi 93.7 0.014 4.9E-07 46.3 0.5 112 78-223 107-222 (234)
44 4dz1_A DALS D-alanine transpor 93.5 0.057 2E-06 44.3 3.9 117 69-209 118-236 (259)
45 3tql_A Arginine-binding protei 93.3 0.024 8.3E-07 44.6 1.2 112 78-223 99-220 (227)
46 2pvu_A ARTJ; basic amino acid 93.1 0.055 1.9E-06 44.7 3.1 112 78-223 137-254 (272)
47 2q88_A EHUB, putative ABC tran 93.0 0.044 1.5E-06 44.5 2.4 125 69-223 102-232 (257)
48 3qax_A Probable ABC transporte 92.7 0.036 1.2E-06 45.0 1.4 110 78-223 129-245 (268)
49 3um7_A Potassium channel subfa 92.6 0.068 2.3E-06 47.2 3.2 57 17-73 222-285 (309)
50 2pyy_A Ionotropic glutamate re 92.6 0.06 2E-06 42.3 2.7 109 78-223 102-214 (228)
51 3mpk_A Virulence sensor protei 92.0 0.06 2.1E-06 44.5 2.0 108 77-219 128-241 (267)
52 2vha_A Periplasmic binding tra 92.0 0.071 2.4E-06 44.2 2.5 115 78-223 120-240 (287)
53 1wdn_A GLNBP, glutamine bindin 91.8 0.039 1.3E-06 43.4 0.6 112 78-223 99-214 (226)
54 2yjp_A Putative ABC transporte 91.6 0.053 1.8E-06 45.5 1.3 112 78-223 154-268 (291)
55 1xt8_A Putative amino-acid tra 91.5 0.063 2.1E-06 44.9 1.6 111 78-223 143-257 (292)
56 1lst_A Lysine, arginine, ornit 90.0 0.31 1.1E-05 38.6 4.5 110 81-223 104-224 (239)
57 3i6v_A Periplasmic His/Glu/Gln 86.6 0.17 5.9E-06 40.6 0.7 104 83-223 102-209 (232)
58 2yln_A Putative ABC transporte 84.8 0.34 1.2E-05 40.4 1.7 112 77-223 153-269 (283)
59 2iee_A ORF2, probable ABC tran 84.3 0.2 6.7E-06 41.4 0.0 118 69-223 113-238 (271)
60 3sya_A G protein-activated inw 84.3 0.42 1.4E-05 42.6 2.2 61 15-75 87-150 (340)
61 3spc_A Inward-rectifier K+ cha 78.6 0.85 2.9E-05 40.7 2.0 60 16-75 91-153 (343)
62 3rvy_A ION transport protein; 73.9 1 3.6E-05 38.1 1.3 58 17-74 178-242 (285)
63 2v25_A Major cell-binding fact 66.1 2.1 7.2E-05 33.9 1.4 106 77-209 137-243 (259)
64 3uif_A Sulfonate ABC transport 26.5 33 0.0011 29.0 2.5 29 77-109 108-136 (348)
65 3ix1_A N-formyl-4-amino-5-amin 22.8 46 0.0016 27.2 2.6 29 77-109 95-123 (302)
66 3qsl_A Putative exported prote 20.8 79 0.0027 25.9 3.7 27 78-108 128-155 (346)
67 3ksx_A Nitrate transport prote 20.6 1E+02 0.0034 25.5 4.3 29 77-109 120-148 (324)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.94 E-value=3.7e-29 Score=244.21 Aligned_cols=201 Identities=25% Similarity=0.437 Sum_probs=153.4
Q ss_pred CCCccccccCc---------cCCCccchhhHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 2 ISPYYEHYKIR---------EQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 2 ~sPy~~~~~~~---------~~~~~~~l~~s~w~~~~~l~~qg~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
++||+|+.... .....+++.+++|+++++|++||.+..|++.++|+++++||||++|++++|||+|+|+||
T Consensus 537 ~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 537 FSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp ----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888863211 134567899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCcccce
Q psy6615 73 FPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMIS 150 (227)
Q Consensus 73 ~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~ 150 (227)
+++..++|++++||++|+ ++++|++.++++..+|++++ .+.|++||++|+.. ...+.+.+| |++
T Consensus 617 ~~~~~~~I~s~~dL~~~~-~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 682 (823)
T 3kg2_A 617 VERMVSPIESAEDLSKQT-EIAYGTLDSGSTKEFFRRSK---IAVFDKMWTYMRSAEPSVFVRTTAE----------GVA 682 (823)
T ss_dssp HHHHCCCCCSSHHHHHCC-SSEEECBSSSHHHHHHHHCC---CHHHHHHHHHHHHCSSCCCBSSHHH----------HHH
T ss_pred ccccCCCCCCHHHHhhCC-CeeEEEEeCCcHHHHHHhcc---chHHHHHHHHHHhcCCccccCCHHH----------HHH
Confidence 999999999999999875 79999999999999999986 47899999999864 345667777 555
Q ss_pred eecccCCCcEEEechhhhhhhhhhc-ccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCccc
Q psy6615 151 AVNVCQGKPEYKWTVAMSLFSMHTH-YRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKL 222 (227)
Q Consensus 151 ~v~~~~G~yAFi~es~~leY~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~ 222 (227)
+++..+|.|||++|.+.++|....+ |++..++..+....++.. +|+ ||||+.||+++ .+.+.+|.+
T Consensus 683 ~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~--spl~~~~~~~i----l~l~e~G~~ 750 (823)
T 3kg2_A 683 RVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKG--SSLGTPVNLAV----LKLSEQGLL 750 (823)
T ss_dssp HHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETT--CSSHHHHHHHH----HHHHHTTHH
T ss_pred HHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCC--ChHHHHHHHHH----HHHHhCCcH
Confidence 5554568899999999999987655 666666666655555554 455 99999999998 677766654
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.38 E-value=6.7e-08 Score=83.66 Aligned_cols=124 Identities=16% Similarity=0.241 Sum_probs=84.9
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCcccceeeccc
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMISAVNVC 155 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~~v~~~ 155 (227)
..|++++||.... .+++|++.+++...+|.+.. .+.|.++|+.|... ...+.+.++++ +.|..
T Consensus 153 ~~i~~~~dL~g~~-~~~vg~v~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~- 217 (312)
T 1yae_A 153 SPIDSADDLAKQT-KIEYGAVEDGATMTFFKKSK---ISTYDKMWAFMSSRRQSVLVKSNEEGI----------QRVLT- 217 (312)
T ss_dssp --CCSHHHHHTCS-SSEEECBTTSHHHHHHHHCC---BHHHHHHHHHHHHTHHHHCBSSHHHHH----------HHHHH-
T ss_pred CCCCCHHHHhhcc-CceEEEEeCChHHHHHHhcc---CchHHHHHHHHHhcCCCcccCCHHHHH----------HHHHc-
Confidence 6899999998642 56899998888888888765 35688888877532 23455666644 44443
Q ss_pred CCCcEEEechhhhhhhhhhcccccCCCccccccceec-cccCCCCcccccccceeeeCccccccCcccc
Q psy6615 156 QGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTA-GVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 156 ~G~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~~~-~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|.+|++.+...++|.+...+.++.++..+....+.. ..|+ +|++..||+++ .+.++++.++
T Consensus 218 -G~Da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~--~~l~~~in~~l----~~l~~~G~~~ 279 (312)
T 1yae_A 218 -SDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMG--SPYRDKITIAI----LQLQEEGKLH 279 (312)
T ss_dssp -SSEEEEEEHHHHHHHHTTCTTEEEESSCSSCEEEEEEEETT--CSSHHHHHHHH----HHHHHHTHHH
T ss_pred -CCcEEEeccHHHHHHHhcCCCEEEecccccccceEEEEeCC--CCcHHHHHHHH----HHHHHcCCHH
Confidence 459999999999998876655444443443333333 3466 79999999999 7777776543
No 3
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.35 E-value=2.7e-07 Score=76.78 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=90.2
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCcccceeeccc
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMISAVNVC 155 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~~v~~~ 155 (227)
.+|++++||.... .+++|++.+++...+|.+.. .+.|..+|+.|... ...+.+.++++++ |.
T Consensus 119 ~~i~~~~dL~g~~-~~~ig~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~-- 182 (259)
T 3g3k_A 119 TPIDSADDLAKQT-KIEYGAVEDGATMTFFKRSK---ISTYDKMWAFMSSRRQSVLVKSNEEGIQR----------VL-- 182 (259)
T ss_dssp SSCCSHHHHHTCS-SSEEEEETTSHHHHHHHHCC---SHHHHHHHHHHHHTHHHHEESSHHHHHHH----------HH--
T ss_pred ccccCHHHhccCC-CceEEEecCcHHHHHHhhcc---chhHHHHHHHHHhcCCCcccCCHHHHHHH----------HH--
Confidence 4699999998654 67899999999999998875 45688888887643 2345566665444 43
Q ss_pred CCCcEEEechhhhhhhhhhcccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 156 QGKPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 156 ~G~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+|.+|++.+...++|.+...+.++.++..+....+..+ .|+ +|++..||+++ .+.++++.++
T Consensus 183 ~g~da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~--~~l~~~in~~l----~~l~~~G~~~ 245 (259)
T 3g3k_A 183 TSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMG--SPYRDKITLAI----LKLQEQGKLH 245 (259)
T ss_dssp HSSEEEEEEHHHHHHHHHHCTTEEEESSCSSCEEECCEEETT--CTHHHHHHHHH----HHHHHTC-CH
T ss_pred hCCeEEEechHHHHHHhcCCceEEEecccceeeeEEEEECCC--CccHHHHHHHH----HHHHhcChHH
Confidence 35699999999999988766555544444444434333 465 78999999999 8888888765
No 4
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=98.07 E-value=2.1e-06 Score=73.86 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=85.0
Q ss_pred CCCCCHHHHhhC--CCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeeccc
Q psy6615 78 TPVTNVNELLEN--KWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVC 155 (227)
Q Consensus 78 ~~I~sl~DL~~q--~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~ 155 (227)
.+|++++||... ...+.+|++.+++.+.+++... .+++++..++. ..+.+.++++++ |.
T Consensus 154 ~~i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~----------l~-- 214 (292)
T 1pb7_A 154 TRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQV-----ELSTMYRHMEK--HNYESAAEAIQA----------VR-- 214 (292)
T ss_dssp CCCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCG-----GGHHHHHHHTT--TCBSSHHHHHHH----------HH--
T ss_pred cCCCCCcCccccCcccceEEEEEcCchHHHHhhhcc-----cHHHHHHHHHh--hcCCCHHHHHHH----------HH--
Confidence 578999999731 1124579999999999987642 15566665543 345566775554 43
Q ss_pred CCC-cEEEechhhhhhhhhhcccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 156 QGK-PEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 156 ~G~-yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+|+ +||+++...++|.+..+|.++.++..+....+..+ .|+ +|++..||+++ .++++++.++
T Consensus 215 ~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~--~~l~~~in~al----~~l~~~G~~~ 278 (292)
T 1pb7_A 215 DNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKD--SPWKQNVSLSI----LKSHENGFME 278 (292)
T ss_dssp TTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEECCEEETT--CSSHHHHHHHH----HHHHHSSHHH
T ss_pred cCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCceEEEEeCC--CHHHHHHHHHH----HHHHhCCCHH
Confidence 355 99999999999988777666656555544444443 465 79999999999 8888888764
No 5
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=97.99 E-value=3.3e-06 Score=72.47 Aligned_cols=121 Identities=12% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCCCCHHHHhh---CCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeec
Q psy6615 77 DTPVTNVNELLE---NKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVN 153 (227)
Q Consensus 77 ~~~I~sl~DL~~---q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~ 153 (227)
...|++++||.. +. +.++|+++|++.+.++++. +..++..|+. ..+.+.++++++ |.
T Consensus 153 ~~~i~~~~dL~~~~~~~-g~~vg~~~gs~~~~~l~~~-------~~~~~~~i~~--~~~~~~~~~~~~----------l~ 212 (294)
T 2rc8_A 153 GTELSGIHDPKLHHPSQ-GFRFGTVRESSAEDYVRQS-------FPEMHEYMRR--YNVPATPDGVQY----------LK 212 (294)
T ss_dssp SCCCCSTTCHHHHSCCT-TCCEECBTTSHHHHHHHHH-------CHHHHHHHGG--GCBSSHHHHHHH----------HH
T ss_pred CCCcCChhhhhhcCccc-CeEEEEEcCChHHHHHHHH-------HHHHHHHHHH--hcCCCHHHHHHH----------HH
Confidence 457999999972 22 6799999999999999886 3445544432 234566675555 32
Q ss_pred ccCCC-cEEEechhhhhhhhhhc--ccccCCCccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 154 VCQGK-PEYKWTVAMSLFSMHTH--YRKKSVPNTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 154 ~~~G~-yAFi~es~~leY~~~~~--~~~~~~~~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
..+|+ +||+++...++|.+..+ +.++.++.++....+..+ .|+ +|++..||+++ .++++++.++
T Consensus 213 ~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~--~~l~~~in~al----~~l~~~G~~~ 280 (294)
T 2rc8_A 213 NDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPN--SPLTSNISELI----SQYKSHGFMD 280 (294)
T ss_dssp SSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTT--CTHHHHHHHHH----HHHHHTTHHH
T ss_pred hccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCC--CHHHHHHHHHH----HHHHhCCCHH
Confidence 21144 99999999999988643 334444444433334333 455 79999999999 8888888764
No 6
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=97.62 E-value=2.4e-05 Score=60.05 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=55.1
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
++...++.+++||++.+++..| ++..|.+..||+++.+|+++.+++++..++++++.++..
T Consensus 56 ~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 56 GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999 799999999999999999999999999999998877643
No 7
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=97.62 E-value=4.7e-05 Score=63.16 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=80.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcc--cccccccccccccccCCcccceeeccc
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVG--VVNVLPAIVGLNVVHPDIPMISAVNVC 155 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~--~~~v~~~~egv~~v~~d~pgi~~v~~~ 155 (227)
.+|++++||.... .+++|++.+++...+|.... .+.|.++|+.+... ...+.+.++++ +.++..
T Consensus 119 ~~i~~~~dL~g~~-~~~ig~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~ 184 (263)
T 1mqi_A 119 TPIESAEDLSKQT-EIAYGTLDSGSTKEFFRRSK---IAVFDKMWTYMRSAEPSVFVRTTAEGV----------ARVRKS 184 (263)
T ss_dssp CSCCSHHHHHTCS-SSEEECBSSSHHHHHHHHCC---SHHHHHHHHHHHHCSSCCCBSSHHHHH----------HHHHHT
T ss_pred cccCCHHHHhccc-CeeEEEEeccHHHHHHHhcc---chhHHHHHHHHhhCCCceecCCHHHHH----------HHHhhc
Confidence 4699999998642 34688787777777776654 34577777766432 23345556644 444224
Q ss_pred CCCcEEEechhhhhhhhhhc-ccccCCCccccccceec-cccCCCCcccccccceeeeCccccccCcccc
Q psy6615 156 QGKPEYKWTVAMSLFSMHTH-YRKKSVPNTLVVDLWTA-GVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 156 ~G~yAFi~es~~leY~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+|.+|++.+..++.|.+... +.+..++.++....+.. ..|+ ++++..||+++ .+.++++.++
T Consensus 185 ~g~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~l~~~in~~l----~~l~~~g~~~ 248 (263)
T 1mqi_A 185 KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKG--SSLGNAVNLAV----LKLNEQGLLD 248 (263)
T ss_dssp TTSEEEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETT--CTTHHHHHHHH----HHHHHTTHHH
T ss_pred CCcEEEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCC--CccHHHHHHHH----HHHHhcccHH
Confidence 56789999999999977543 22222333332333333 3466 69999999999 7888777654
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=97.61 E-value=3.4e-05 Score=60.44 Aligned_cols=59 Identities=15% Similarity=0.423 Sum_probs=53.4
Q ss_pred CccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 16 GFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 16 ~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
+..++.+++||++.+++..| ++..|.+..||+++.+|+++.+++++..++.+++.+...
T Consensus 40 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999 799999999999999999999999999999988877543
No 9
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=97.45 E-value=2.2e-05 Score=58.38 Aligned_cols=61 Identities=13% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
++...++.+++||++.+++..| ++..|.+..+|+++.+|+++.+++++..++++++.++..
T Consensus 35 ~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 35 GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455689999999999999999 799999999999999999999999999999998877654
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=97.36 E-value=9.5e-05 Score=59.21 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~ 75 (227)
++...++.+++||++.+++..| ++..|.+..||+++.+|+++.+++++..++.+++.++...
T Consensus 79 ~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 79 GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445589999999999999999 7999999999999999999999999999999999887654
No 11
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=97.35 E-value=0.00012 Score=57.12 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=53.3
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
++...++.+++||++.+++..| ++..|.+..+|+++.+|.++.+++++..++.+++.+.
T Consensus 35 ~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 35 GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp TCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999 7999999999999999999999999999999887663
No 12
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=97.32 E-value=6.2e-05 Score=60.63 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
++...++.+++||++.+++..| ++..|.+..+|+++.+|+++.+++++..++.+++.++..
T Consensus 62 ~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 62 GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp TCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred CcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999 799999999999999999999999999999999888743
No 13
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=97.07 E-value=0.00025 Score=53.76 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=51.4
Q ss_pred cchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 18 HKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 18 ~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
.++.+++||++.+++..| ++..|.+..+|+++.+|.++.+.+++...+++++.++..
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999 789999999999999999999999999999888776544
No 14
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=97.05 E-value=0.00021 Score=60.80 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=73.9
Q ss_pred CCCCCHHHHhhCC-----CceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceee
Q psy6615 78 TPVTNVNELLENK-----WRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAV 152 (227)
Q Consensus 78 ~~I~sl~DL~~q~-----~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v 152 (227)
.+|++++||..++ .+.++|++.+++...++... +..++..+... ...+.++++++ |
T Consensus 142 ~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~~-------~~~~~~~i~~~--~~~~~~~~l~~----------l 202 (284)
T 2a5s_A 142 TQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNN-------YPYMHQYMTRF--NQRGVEDALVS----------L 202 (284)
T ss_dssp CCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTT-------CHHHHHHHGGG--CCSSHHHHHHH----------H
T ss_pred cccccccccccCChhHcCCCceEEEEeCCchHHHHHHH-------HHHHHHHHHhc--cCCCHHHHHHH----------H
Confidence 5788888886421 14689999888777777653 44444334321 12455665554 3
Q ss_pred cccCCC-cEEEechhhhhhhhhhc--ccccCC--Cccccccceec-cccCCCCcccccccceeeeCccccccCcccc
Q psy6615 153 NVCQGK-PEYKWTVAMSLFSMHTH--YRKKSV--PNTLVVDLWTA-GVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 153 ~~~~G~-yAFi~es~~leY~~~~~--~~~~~~--~~~~~~d~~~~-~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
. +|. +|++.+...++|.+... +++..+ +..+....+.. ..|+ +|++..||+++ .+.++++.++
T Consensus 203 ~--~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~--~~l~~~ln~~l----~~l~~~g~~~ 271 (284)
T 2a5s_A 203 K--TGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKG--SPWKRQIDLAL----LQFVGDGEME 271 (284)
T ss_dssp H--TTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETT--CTTHHHHHHHH----HHHHHHTHHH
T ss_pred H--cCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCC--CHHHHHHHHHH----HHHHhCChHH
Confidence 2 344 89999999999987654 333333 12333333333 3465 69999999999 7777776553
No 15
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=97.03 E-value=0.00023 Score=52.41 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=52.5
Q ss_pred ccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 17 FHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 17 ~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
..++.+++||++.++...| ++..|++..+|+++.+|.++.+.+.+...+++++.++.+
T Consensus 30 ~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 30 GLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3689999999999999999 789999999999999999999999999999988776544
No 16
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=96.99 E-value=0.00031 Score=50.05 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=48.2
Q ss_pred cchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEE
Q psy6615 18 HKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAF 70 (227)
Q Consensus 18 ~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~ 70 (227)
.++.+++||+..++...| ++..|++..+|+++.+|.++.+.+.+...+++++.
T Consensus 27 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999 78999999999999999999999998888877654
No 17
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=96.87 E-value=0.00054 Score=56.34 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=79.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccC---CCchhhhhhhhhhcc---cccccccccccccccCCccccee
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSK---GSSVHSICWQYKIVG---VVNVLPAIVGLNVVHPDIPMISA 151 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~---~~~~yk~m~~~m~~~---~~~v~~~~egv~~v~~d~pgi~~ 151 (227)
.+|++++||.+ .-.+..|+..++....++++.... ..+.|.++|+.+++. ...+.+.++++++
T Consensus 115 ~~i~~~~dL~~-~v~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------- 183 (265)
T 2v3u_A 115 TSIQSLQDLSK-QTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQK---------- 183 (265)
T ss_dssp CCCCSHHHHHT-CSSSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHH----------
T ss_pred CCccchhhhhh-hhcEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHH----------
Confidence 56999999984 224677888888888888865311 123577788777642 1245556664444
Q ss_pred ecccCCCcEEEechhhhhhhhhhc--ccccCCCcccccccee-ccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 152 VNVCQGKPEYKWTVAMSLFSMHTH--YRKKSVPNTLVVDLWT-AGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 152 v~~~~G~yAFi~es~~leY~~~~~--~~~~~~~~~~~~d~~~-~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|. +|..|++.+..+++|.+..+ +.++.++..+....+. +..|+ +|++..||+++ .+.++++.++
T Consensus 184 l~--~G~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~--~~l~~~in~~l----~~l~~~g~~~ 250 (265)
T 2v3u_A 184 VK--YGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHG--SPYRDVFSQRI----LELQQSGDMD 250 (265)
T ss_dssp HH--HSSCEEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETT--CTTHHHHHHHH----HHHHHHTHHH
T ss_pred HH--cCCEEEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCC--CccHHHHHHHH----HHHhhCChHH
Confidence 43 35669999999999987543 2233333333233333 33465 78999999999 7777776543
No 18
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=96.73 E-value=0.001 Score=52.33 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 18 HKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 18 ~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
.++.+++||++.+++..| ++..|.+..+|+++.+|.++.+.+++...+++++.+.
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999 7899999999999999999999999988888775543
No 19
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=96.54 E-value=0.0012 Score=54.70 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=53.2
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
++...++.+++||++.+++..| ++..|.+..||+++.+++++.+.+.+..++++++.++.
T Consensus 160 ~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 160 NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999 78999999999999999999999999999988876653
No 20
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=96.17 E-value=0.0014 Score=53.99 Aligned_cols=131 Identities=14% Similarity=-0.001 Sum_probs=74.9
Q ss_pred ceeeEEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccC
Q psy6615 65 GNLVAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHP 144 (227)
Q Consensus 65 AnLaA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~ 144 (227)
.+....+.+.+....|++++||. +.++|++.|+..+.+++.-.. ........ .....+.++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~dL~----g~~v~v~~gs~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~--- 159 (243)
T 4gvo_A 95 NNFPLQLTVLDSNNSINSTKDLA----GKRVITSATSNGALVLKKINE-------EQGNNFEI-AYEGQGSNDTANQ--- 159 (243)
T ss_dssp EECCEEEEEETTCCSCSSGGGGT----TCEEEECTTCHHHHHHHHHHH-------HTTSCSEE-EECCSGGGSHHHH---
T ss_pred ccccceEEEeccccccCchHHhc----CCeEEEecCchHHHHHHHHHH-------hcccccee-ccccCChHHHHHH---
Confidence 34445555555568899999996 358999999988777765421 00000000 0112334443433
Q ss_pred CcccceeecccCCCcEEEechhhhhhhhhhcc-cccCCCcccccc-ceeccccCCCCcccccccceeeeCccccccCccc
Q psy6615 145 DIPMISAVNVCQGKPEYKWTVAMSLFSMHTHY-RKKSVPNTLVVD-LWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKL 222 (227)
Q Consensus 145 d~pgi~~v~~~~G~yAFi~es~~leY~~~~~~-~~~~~~~~~~~d-~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~ 222 (227)
+...+ -+|++.+...++|.+.... ..+.++..+... .+.+..|+ ...++..||+++ .+.++||.+
T Consensus 160 -------L~~Gr-vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~l~~~in~~l----~~l~~~G~~ 226 (243)
T 4gvo_A 160 -------LKTGR-ADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKD-ETKLSKKVDEAL----QSIIDDGTL 226 (243)
T ss_dssp -------HHHTS-CSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTT-CHHHHHHHHHHH----HHHHHTTHH
T ss_pred -------HHcCC-ccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCC-CHHHHHHHHHHH----HHHHhCcHH
Confidence 32221 3899999999998765432 122222222222 22233344 345899999999 888888876
Q ss_pred c
Q psy6615 223 K 223 (227)
Q Consensus 223 ~ 223 (227)
+
T Consensus 227 ~ 227 (243)
T 4gvo_A 227 K 227 (243)
T ss_dssp H
T ss_pred H
Confidence 5
No 21
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=95.78 E-value=0.0042 Score=54.69 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~ 75 (227)
+....++.+++||++.+++..| ++..|.+..||+++.++.++.+++.+..++.+.+.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456789999999999999999 7899999999999999999999999999998888876553
No 22
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=95.75 E-value=0.0055 Score=54.22 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
....++.+++||++.+++..| ++..|++..||+++.+|.++.+.+.+...++++..+.
T Consensus 111 ~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 111 HSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp --CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355899999999999999999 7999999999999999999999999988888877664
No 23
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=95.72 E-value=0.0043 Score=55.11 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=53.5
Q ss_pred cchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCC
Q psy6615 18 HKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75 (227)
Q Consensus 18 ~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~ 75 (227)
.++.+++||++.+++..| ++..|.+..||+++.++.++.+++.+.-++.+++.++.+.
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999 7899999999999999999999999999999998887764
No 24
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=95.64 E-value=0.0087 Score=47.62 Aligned_cols=118 Identities=8% Similarity=0.019 Sum_probs=72.9
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
++++.......|++++||. +.++|+..++....+++.... ....+.+.++++++
T Consensus 97 ~~~~~~~~~~~i~~~~dL~----g~~v~~~~g~~~~~~l~~~~~---------------~~~~~~~~~~~~~~------- 150 (233)
T 1ii5_A 97 GLLIPGTATPLFRSVGDLK----NKEVAVVRDTTAVDWANFYQA---------------DVRETNNLTAAITL------- 150 (233)
T ss_dssp EEEEEGGGTTTCSSGGGGT----TCEEEEETTSHHHHHHHHTTC---------------EEEEESSHHHHHHH-------
T ss_pred EEEEECCCCCCCCCHHHhC----CCeEEEECCccHHHHHHHcCC---------------CeEEcCCHHHHHHH-------
Confidence 3444433223899999996 358999999998888876410 01123344554444
Q ss_pred ceeecccCCC-cEEEechhhhhhhhhhcc--cccCCCccccc-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 149 ISAVNVCQGK-PEYKWTVAMSLFSMHTHY--RKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 149 i~~v~~~~G~-yAFi~es~~leY~~~~~~--~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+. +|. +|++.+...+.|.+.... .++.++..... +...+..|+ +|++..||+.+ .+++.++.++
T Consensus 151 ---l~--~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~l~~~~~~~l----~~l~~~g~~~ 218 (233)
T 1ii5_A 151 ---LQ--KKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKEN--SPLQKTINVEM----LNLLYSRVIA 218 (233)
T ss_dssp ---HH--TTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETT--CTTHHHHHHHH----HHHHHTTHHH
T ss_pred ---HH--cCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCC--chHHHHHHHHH----HHHHhCCcHH
Confidence 32 233 799999999998776543 23333333322 233333455 68999999999 7777776553
No 25
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=95.59 E-value=0.0036 Score=55.89 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=55.0
Q ss_pred CccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCCC
Q psy6615 16 GFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMM 76 (227)
Q Consensus 16 ~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~ 76 (227)
...++.+++||++.+++..| ++..|.+..||+++.+|.++.+++.+.-++.+++.++.+..
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999 78899999999999999999999999999999988887653
No 26
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=95.53 E-value=0.0022 Score=56.20 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=50.1
Q ss_pred cchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCC
Q psy6615 18 HKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75 (227)
Q Consensus 18 ~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~ 75 (227)
.++.+++||++.+++..| ++..|.+..+|+++.+|.++.+++++...+.+++.++...
T Consensus 44 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999 7889999999999999999999999998888888777653
No 27
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=95.39 E-value=0.0083 Score=52.91 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=51.1
Q ss_pred cchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 18 HKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 18 ~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
-++.+++||++.+++..| ++..|.+..+|+++.+++++.+++++..++.+++.+..
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999 78999999999999999999999999999998876654
No 28
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=95.34 E-value=0.0052 Score=49.49 Aligned_cols=122 Identities=7% Similarity=-0.037 Sum_probs=74.7
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
++++.......|++++||.. . +.++|+..|+..+.+++..... . +-..+.+.++++++
T Consensus 104 ~~~~~~~~~~~i~~~~dL~~-~-g~~v~~~~g~~~~~~l~~~~~~-----------~--~~~~~~~~~~~~~~------- 161 (239)
T 3kbr_A 104 TPITLCSEEARFQTLEQIDQ-P-GVTAIVNPGGTNEKFARANLKK-----------A--RILVHPDNVTIFQQ------- 161 (239)
T ss_dssp EEEEEGGGGGGGSSHHHHSS-T-TCEEEECTTSHHHHHHHHHCSS-----------S--EEEECCCTTTHHHH-------
T ss_pred EEEEECCcccccCCHHHhcC-C-CcEEEEcCCCcHHHHHHHhCCC-----------C--ceEEeCCHHHHHHH-------
Confidence 44444444458999999974 2 6799999999988888765210 0 01123344554444
Q ss_pred ceeecccCCC-cEEEechhhhhhhhhhcccccCCC--ccccccceecc-ccCCCCcccccccceeeeCccccccCcccc
Q psy6615 149 ISAVNVCQGK-PEYKWTVAMSLFSMHTHYRKKSVP--NTLVVDLWTAG-VKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 149 i~~v~~~~G~-yAFi~es~~leY~~~~~~~~~~~~--~~~~~d~~~~~-~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+. +|. +|++.+...+.|.+.....++.+. ..+....+..+ .| ...++..||+++ .+.++++.++
T Consensus 162 ---l~--~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~l~~~ln~~l----~~l~~~g~~~ 229 (239)
T 3kbr_A 162 ---IV--DGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR--DEAFKRYVDQWL----HIAEQSGLLR 229 (239)
T ss_dssp ---HH--TTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS--CHHHHHHHHHHH----HHHHHHTHHH
T ss_pred ---HH--cCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC--CHHHHHHHHHHH----HHHHHCCcHH
Confidence 32 233 899999999999876543332222 22222333333 34 678999999998 6666666553
No 29
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=95.24 E-value=0.0095 Score=48.80 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=75.6
Q ss_pred eEEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcc
Q psy6615 68 VAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIP 147 (227)
Q Consensus 68 aA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~p 147 (227)
.++++.......+++++||.. .++|+..|+..+.+++..... . +-..+.+.++++++
T Consensus 103 ~~~~v~~~~~~~~~~~~dl~g----~~i~v~~g~~~~~~l~~~~~~----~---------~i~~~~~~~~~~~~------ 159 (243)
T 4h5g_A 103 ISFLVHKADVEKYKDLTSLES----ANIAAQKGTVPESMVKEQLPK----A---------QLTSLTNMGEAVNE------ 159 (243)
T ss_dssp EEEEEEGGGTTTCCSHHHHHT----SEEEEETTSHHHHHHHHHCTT----S---------EEEEESCHHHHHHH------
T ss_pred ccccccccccccccccccCCC----CEEEecCCcHHHHHHHHhccc----c---------eeEEeCCHHHHHHH------
Confidence 455655555678999999973 589999999988888765310 0 01234455565544
Q ss_pred cceeecccCCC-cEEEechhhhhhhhhhccc--ccCCCcc-ccccceec-cccCCCCc-ccccccceeeeCccccccCcc
Q psy6615 148 MISAVNVCQGK-PEYKWTVAMSLFSMHTHYR--KKSVPNT-LVVDLWTA-GVKGLFSP-MRGSINKHYYYSPTEFQDNPK 221 (227)
Q Consensus 148 gi~~v~~~~G~-yAFi~es~~leY~~~~~~~--~~~~~~~-~~~d~~~~-~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~ 221 (227)
|. +|. +|++.+..++.|++..+.. ...++.. ...+.+.. ..|+ +| ++..||+++ .+.++||.
T Consensus 160 ----l~--~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~--~~~L~~~~n~aL----~~l~~dG~ 227 (243)
T 4h5g_A 160 ----LQ--AGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKN--SDDLKEVVDKVI----QKLKDEGT 227 (243)
T ss_dssp ----HH--HTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESS--CHHHHHHHHHHH----HHHHHHTH
T ss_pred ----HH--cCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCC--CHHHHHHHHHHH----HHHHHCCH
Confidence 32 244 7899999888877655432 2222222 22233333 3455 54 899999999 78888877
Q ss_pred cc
Q psy6615 222 LK 223 (227)
Q Consensus 222 ~~ 223 (227)
++
T Consensus 228 ~~ 229 (243)
T 4h5g_A 228 YQ 229 (243)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 30
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=95.24 E-value=0.0048 Score=49.86 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=69.7
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.+|++++||. +.++|+..|+....++..... . . .-..+.+.++++++ +. +|
T Consensus 100 ~~~~~~~dL~----g~~i~~~~g~~~~~~~~~~~~-------~----~--~~~~~~~~~~~~~~----------l~--~G 150 (237)
T 3kzg_A 100 SKISTFDDLH----GKKIGVRKGTPYARQVLSENR-------N----N--QVIFYELIQDMLLG----------LS--NN 150 (237)
T ss_dssp CSCCSGGGGT----TCEEEEETTSTHHHHHHHTCS-------S----C--EEEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhC----CCEEEEecCCHHHHHHHHhCC-------C----C--cEEEeCCHHHHHHH----------HH--cC
Confidence 3499999997 358999999997777765521 0 0 11233455554444 32 23
Q ss_pred -CcEEEechhhhhhhhhhcc--------cccCCCccc-cc-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHY--------RKKSVPNTL-VV-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~--------~~~~~~~~~-~~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+...+.|.+.... ..+..+..+ .. ....+..|+ ...++..||+++ .+.+++|.++
T Consensus 151 ~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~-~~~l~~~l~~~l----~~l~~~G~~~ 222 (237)
T 3kzg_A 151 QVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPD-QFVLIKKINKIL----LEMEADGTYL 222 (237)
T ss_dssp SSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGG-GHHHHHHHHHHH----HHHHHSSHHH
T ss_pred CCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCC-CHHHHHHHHHHH----HHHHHCCcHH
Confidence 3899999999999876533 222222222 22 222333444 346899999999 8888888765
No 31
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=95.21 E-value=0.0043 Score=50.61 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=70.0
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccC
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQ 156 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~ 156 (227)
...|++++||. +.++|+.+|+....+++..... . .-..+.+.++++++ +. +
T Consensus 119 ~~~i~~~~dL~----g~~i~v~~g~~~~~~l~~~~~~----~---------~~~~~~~~~~~~~~----------L~--~ 169 (249)
T 4f3p_A 119 NTTIKSIDDLN----GKVIAAKTGTATIDWIKAHLKP----K---------EIRQFPNIDQAYLA----------LE--A 169 (249)
T ss_dssp CCSCCSSGGGT----TSEEEEETTSHHHHHHHHHCCC----S---------EEEEESSHHHHHHH----------HH--T
T ss_pred CCCcCChHHhC----CCEEEEeCCChHHHHHHhcCCC----c---------eEEEcCCHHHHHHH----------HH--c
Confidence 34799999996 3589999999998888775210 0 01123344554444 32 2
Q ss_pred CC-cEEEechhhhhhhhhhccc--ccCCCcccccc-ceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 157 GK-PEYKWTVAMSLFSMHTHYR--KKSVPNTLVVD-LWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 157 G~-yAFi~es~~leY~~~~~~~--~~~~~~~~~~d-~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|. +|++.+...++|.+..... ++..+..+... ...+..|+ +|++..||+++ .++++++.++
T Consensus 170 GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~--~~l~~~l~~~l----~~l~~~g~~~ 234 (249)
T 4f3p_A 170 GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKG--SPLVAKVNAEL----ARMKADGRYA 234 (249)
T ss_dssp TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETT--CTHHHHHHHHH----HHHHHHTHHH
T ss_pred CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCC--chHHHHHHHHH----HHHHhCCcHH
Confidence 33 8999999999997765321 22222222222 22333455 57999999999 7787777654
No 32
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=95.20 E-value=0.0071 Score=48.78 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=71.1
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..|++++||. +.++|+..|+....+++...+ . .-..+.+.++++++ +. +|
T Consensus 108 ~~i~~~~dL~----g~~i~v~~g~~~~~~l~~~~~--~------------~~~~~~~~~~~~~~----------L~--~g 157 (242)
T 3del_B 108 ENKHPLPLTQ----YRSVAVQTGTYQEAYLQSLSE--V------------HIRSFDSTLEVLME----------VM--HG 157 (242)
T ss_dssp CCSCCCCGGG----SSCEEEETTSHHHHHHHHSTT--C------------CEEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhC----CCEEEEEcCcHHHHHHHhCCC--c------------eEEEECCHHHHHHH----------HH--cC
Confidence 8899999996 357999999998888877211 0 01123344554444 32 23
Q ss_pred -CcEEEechhhhhhhhhhcccccCCCccccccc----e-eccccCCCCcccccccceeeeCccccccCccccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDL----W-TAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKG 224 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~----~-~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~~ 224 (227)
-+|++.+...+.|.+.....++..+..+.... + .+..|+ ...++..||+++ .++++++.++.
T Consensus 158 ~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~l~~~l~~~l----~~l~~~g~~~~ 225 (242)
T 3del_B 158 KSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD-RPALALKIEAAV----QEIRKEGVLAE 225 (242)
T ss_dssp SSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT-CHHHHHHHHHHH----HHHHHTTHHHH
T ss_pred CCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC-CHHHHHHHHHHH----HHHHHcCCHHH
Confidence 38999999999998765433333333333333 2 233455 334999999999 88888877653
No 33
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=95.17 E-value=0.004 Score=51.44 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=73.6
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
++++... ..|++++||. +.++|+..|++...++....+ ..+...... .-..+.+.++++++
T Consensus 110 ~~~~~~~--~~i~~~~dL~----g~~i~v~~g~~~~~~l~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~------- 170 (268)
T 3hv1_A 110 VLVTKKS--SGIDSVAGMA----GKTLGAQAGSSGYDAFNASPK----ILKDVVANQ--KVVQYSTFTQALID------- 170 (268)
T ss_dssp EEEEEGG--GCCCSSGGGT----TCCEEEETTCHHHHHHHHCTT----TTTTTSGGG--CEEEESSHHHHHHH-------
T ss_pred EEEEECC--CCCCCHHHhC----CCEEEEEeCCchHHHHHHhhH----HHhhhcccc--eEEEeCCHHHHHHH-------
Confidence 4444433 3899999996 458999999999999886532 121111111 12234455564444
Q ss_pred ceeecccCCCcEEEechhhhhhhhhhcc---cccCCCccccc-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 149 ISAVNVCQGKPEYKWTVAMSLFSMHTHY---RKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 149 i~~v~~~~G~yAFi~es~~leY~~~~~~---~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|... --+|++.+...++|.+.... ..+.++..+.. +...+..|+ ...++..||+++ .+.++++.++
T Consensus 171 ---L~~G-rvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~-~~~l~~~ln~~l----~~l~~~g~~~ 240 (268)
T 3hv1_A 171 ---LNSG-RIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKV-DKTLIKKINQGF----ETLYKNGEFQ 240 (268)
T ss_dssp ---HHHT-SCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTT-CHHHHHHHHHHH----HHHHHHTHHH
T ss_pred ---HHcC-CCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCC-CHHHHHHHHHHH----HHHHhCCHHH
Confidence 3332 14899999999999876532 22222222222 222333343 224889999988 7777766554
No 34
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=95.11 E-value=0.0079 Score=56.48 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcce-eeEEe
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGN-LVAFL 71 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAn-LaA~L 71 (227)
+...++.+++||++.+++..| ++..|.+..+|+++.+|.++.+++++...+. +++++
T Consensus 47 ~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 47 GRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999 6889999999999999999998888777666 44443
No 35
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=94.94 E-value=0.019 Score=50.11 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=50.6
Q ss_pred CCCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
.....++.+++||++.+++..| ++..|.+..||+++.++.++.+.+...+.++++..+.
T Consensus 88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999 7899999999999999999998888888877765443
No 36
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=94.88 E-value=0.016 Score=46.06 Aligned_cols=109 Identities=13% Similarity=0.018 Sum_probs=67.5
Q ss_pred CCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCCC-
Q psy6615 80 VTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGK- 158 (227)
Q Consensus 80 I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G~- 158 (227)
|++++||. +.++|+.+|+....++++... ..+ -..+.+.++++++ +. +|.
T Consensus 104 ~~~~~dL~----g~~v~~~~g~~~~~~l~~~~~-----------~~~--~~~~~~~~~~~~~----------l~--~grv 154 (229)
T 2y7i_A 104 YHTFADLK----GKKVGLENGTTHQRYLQDKQQ-----------AIT--PVAYDSYLNAFTD----------LK--NNRL 154 (229)
T ss_dssp CCSTGGGT----TCEEEEETTSHHHHHHHHHCT-----------TSE--EEEESCHHHHHHH----------HH--TTSC
T ss_pred CCCHHHHC----CCEEEEecCCcHHHHHHHhCC-----------CCe--EEecCCHHHHHHH----------HH--cCCc
Confidence 99999996 358999999998888876421 000 1123344554444 32 233
Q ss_pred cEEEechhhhhhhhhhcccccCCCcccc------ccceeccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 159 PEYKWTVAMSLFSMHTHYRKKSVPNTLV------VDLWTAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 159 yAFi~es~~leY~~~~~~~~~~~~~~~~------~d~~~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+|++.+...+.|.+......+.++..+. .+...+..++ +| ++..||+++ .+.+.+|.++
T Consensus 155 Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l----~~l~~~g~~~ 220 (229)
T 2y7i_A 155 EGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKD--NDALLQEINAAL----DKVKASPEYA 220 (229)
T ss_dssp SEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTT--CHHHHHHHHHHH----HHHHTSHHHH
T ss_pred CEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCC--CHHHHHHHHHHH----HHHHhCChHH
Confidence 8999999999987765433333332221 1233333344 45 899999999 7777777654
No 37
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=94.80 E-value=0.011 Score=47.97 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=75.1
Q ss_pred eEEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcc
Q psy6615 68 VAFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIP 147 (227)
Q Consensus 68 aA~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~p 147 (227)
.++++.......|++++||.. .+.++|+..|+....+++..... . .-..+.+.++++++
T Consensus 93 ~~~~~~~~~~~~i~~~~dL~~--~g~~i~v~~g~~~~~~l~~~~~~-----------~--~~~~~~~~~~~~~~------ 151 (245)
T 3k4u_A 93 QSLLVKKGLEKGVKSYKDLDK--PELTLVTKFGVSAEYAAKRLFKN-----------A--KLKTYDTEAEAVQE------ 151 (245)
T ss_dssp EEEEEETTTTTTCCSGGGGCC--SSCEEEEETTSHHHHHHHHHCSS-----------S--EEEEESSHHHHHHH------
T ss_pred eEEEEECCcccccCCHHHhcc--CCcEEEEeCCcHHHHHHHhhCCc-----------C--CEEEeCCHHHHHHH------
Confidence 345555554578999999974 26799999999998888775210 0 01223455554444
Q ss_pred cceeecccCCC-cEEEechhhhhhhhhhcc--cccCCCccccc-cceeccccCCCCc-ccccccceeeeCccccccCccc
Q psy6615 148 MISAVNVCQGK-PEYKWTVAMSLFSMHTHY--RKKSVPNTLVV-DLWTAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKL 222 (227)
Q Consensus 148 gi~~v~~~~G~-yAFi~es~~leY~~~~~~--~~~~~~~~~~~-d~~~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~ 222 (227)
+. +|. +|++.+...+.|.+.... ....++..+.. +...+..|+ +| ++..||+++ .+.++++.+
T Consensus 152 ----L~--~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~l~~~ln~~l----~~l~~~g~~ 219 (245)
T 3k4u_A 152 ----VL--NGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKG--DPDFLNWLNHFL----AQIKHDGSY 219 (245)
T ss_dssp ----HH--SSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTT--CHHHHHHHHHHH----HHHHHHSHH
T ss_pred ----HH--cCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCC--CHHHHHHHHHHH----HHHHhCcHH
Confidence 32 344 889999888888765433 12222222222 233333444 55 889999988 777776654
Q ss_pred c
Q psy6615 223 K 223 (227)
Q Consensus 223 ~ 223 (227)
+
T Consensus 220 ~ 220 (245)
T 3k4u_A 220 D 220 (245)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=94.75 E-value=0.013 Score=47.86 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=72.3
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
.+++.......|++++||. +.++|+..|+..+.+++.... .. .-..+.+.++++++
T Consensus 131 ~~~~~~~~~~~i~~~~dL~----g~~i~~~~g~~~~~~l~~~~~-----------~~--~~~~~~~~~~~~~~------- 186 (269)
T 4i62_A 131 KLIVKKSDLATYQSVNDLA----QKKVGAQKGSIQETMAKDLLQ-----------NS--SLVSLPKNGNLITD------- 186 (269)
T ss_dssp EEEEEGGGTTTCSSGGGGC-----CEEEEETTSHHHHHHHHHCT-----------TS--EEEEESCHHHHHHH-------
T ss_pred EEEEECCccccccCHHHhC----CCeEEEecCchHHHHHHHhCC-----------CC--cEEecCCHHHHHHH-------
Confidence 4455544457899999996 468999999998888876521 00 01123344554444
Q ss_pred ceeecccCCCcEEEechhhhhhhhhhccccc--CCCccc--cccceeccccCCCCcccccccceeeeCccccccCccccc
Q psy6615 149 ISAVNVCQGKPEYKWTVAMSLFSMHTHYRKK--SVPNTL--VVDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLKG 224 (227)
Q Consensus 149 i~~v~~~~G~yAFi~es~~leY~~~~~~~~~--~~~~~~--~~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~~ 224 (227)
+... --+|++.+...+.|.+..+.... ..+... ......+..++ ...++..||+++ .+.++++.++.
T Consensus 187 ---l~~g-~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l----~~l~~~g~~~~ 257 (269)
T 4i62_A 187 ---LKSG-QVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD-SKELKEAVDKTI----QKLKESGELDK 257 (269)
T ss_dssp ---HHTT-SSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS-CHHHHHHHHHHH----HHHHHTTHHHH
T ss_pred ---HHcC-CCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC-CHHHHHHHHHHH----HHHHhCChHHH
Confidence 3221 13899999988888776543322 121111 11222223344 224899999999 77877776653
No 39
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=94.71 E-value=0.0092 Score=52.09 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=55.8
Q ss_pred ccchhhHHHHHHHHHHhcC-CCCCCCCCc-------hhHHHHHHHHHHHHHhhhhcceeeEEeecCCCCCCCCCHHHH
Q psy6615 17 FHKFSNCVWYIYGALLQQG-GGKLPEADS-------GRLVIGTWWLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNEL 86 (227)
Q Consensus 17 ~~~l~~s~w~~~~~l~~qg-~~~~Prs~s-------~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~~~~~I~sl~DL 86 (227)
..++.+++||++.++...| ++..|.+.. +|+++.+|.++.+.+++...+.++..+...+....+..-+|+
T Consensus 199 ~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 199 DWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp SCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred CCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5789999999999999999 788898876 599999999999999999999888877776655555544444
No 40
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=94.46 E-value=0.01 Score=33.34 Aligned_cols=22 Identities=27% Similarity=0.729 Sum_probs=18.1
Q ss_pred CCCccchhhHHHHHHHHHHhcC
Q psy6615 14 QSGFHKFSNCVWYIYGALLQQG 35 (227)
Q Consensus 14 ~~~~~~l~~s~w~~~~~l~~qg 35 (227)
+...+++..++||+||++++.|
T Consensus 3 e~~~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 3 NGDALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred cccceehhhhHHHhhHhheecc
Confidence 5677899999999999999865
No 41
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=94.11 E-value=0.033 Score=52.26 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHHHhhhhcceeeEEee
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLT 72 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt 72 (227)
..-.++.+++||++.+++..| ++..|.+..||+++.+++++.+++++..+|.+.+-+.
T Consensus 371 ~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~ 429 (514)
T 2r9r_B 371 SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429 (514)
T ss_dssp CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence 344579999999999999999 7889999999999999999999999999998876443
No 42
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=94.08 E-value=0.013 Score=47.10 Aligned_cols=119 Identities=10% Similarity=0.074 Sum_probs=68.6
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccC
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQ 156 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~ 156 (227)
..+|++++||. +.++|+..|+....+++.-... +.. ....- .....+.++++++ +. +
T Consensus 104 ~~~i~~~~dL~----g~~i~~~~g~~~~~~l~~~~~~----~~~--~~~~~-~~~~~~~~~~~~~----------L~--~ 160 (246)
T 4eq9_A 104 DSSIKSLDDIG----GKSTEVVQATTSAKQLEAYNAE----HTD--NPTIL-NYTKADFQQIMVR----------LS--D 160 (246)
T ss_dssp CCSCSSGGGCT----TCEEEECTTCHHHHHHHHHHHH----CTT--SCCEE-EECCCCHHHHHHH----------HH--T
T ss_pred CCCCCCHHHhC----CCEEEEecCccHHHHHHHHHhh----CCC--cceEE-EecCCCHHHHHHH----------HH--c
Confidence 45899999997 3589999999988888773100 000 00000 0001244554444 32 2
Q ss_pred CC-cEEEechhhhhhhhhhcc--cccCCCcccccc--ceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 157 GK-PEYKWTVAMSLFSMHTHY--RKKSVPNTLVVD--LWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 157 G~-yAFi~es~~leY~~~~~~--~~~~~~~~~~~d--~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|. +|++.+...+.|.+.... .++..+...... .+.+..|+ ...++..||+++ .+.++++.++
T Consensus 161 g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~l~~~ln~~l----~~l~~~g~~~ 227 (246)
T 4eq9_A 161 GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQG-QDELKSFVDKRI----KELYKDGTLE 227 (246)
T ss_dssp TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETT-CHHHHHHHHHHH----HHHHHTTHHH
T ss_pred CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCC-CHHHHHHHHHHH----HHHHhCCcHH
Confidence 33 899999999999876543 122222222222 23333444 225889999998 7777777654
No 43
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=93.68 E-value=0.014 Score=46.33 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=66.3
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..|++++||. +.++|+.+|+....++++... . .+ -..+.+.++++++ +. +|
T Consensus 107 ~~~~~~~dL~----g~~i~~~~g~~~~~~l~~~~~-------~----~~--~~~~~~~~~~~~~----------l~--~g 157 (234)
T 3h7m_A 107 PPAAGLEDLR----GRKVALHRDGIMHEYLAERGY-------G----KD--LVLTPTPADALRL----------LA--AG 157 (234)
T ss_dssp CCCSSGGGGT----TSCEEEETTSHHHHHHHTTTC-------G----GG--EEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhC----CCEEEEEeCchHHHHHHhcCC-------C----ce--EEEeCCHHHHHHH----------HH--cC
Confidence 3699999996 358999999998888876531 0 00 1123344554444 32 23
Q ss_pred -CcEEEechhhhhhhhhhcc--cccCCCccccc-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHY--RKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~--~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+.....|.+.... .+...+..+.. +...+..++ ...++..||+++ .+.+++|.++
T Consensus 158 ~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l----~~l~~~g~~~ 222 (234)
T 3h7m_A 158 GCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQG-DAELLARFSEGL----AILRKTGQYE 222 (234)
T ss_dssp SSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETT-CHHHHHHHHHHH----HHHHHHTHHH
T ss_pred CceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCC-CHHHHHHHHHHH----HHHHHcCcHH
Confidence 3889999999888775432 12212212222 222233344 334889999988 7777766554
No 44
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=93.48 E-value=0.057 Score=44.30 Aligned_cols=117 Identities=15% Similarity=0.004 Sum_probs=65.1
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
.+++.......|++++||.. .++|+.+|+..+.+++..... . .+-... .-..+.+.++++++
T Consensus 118 ~~~~~~~~~~~i~~~~dL~g----~~v~v~~g~~~~~~l~~~~~~----~-g~~~~~--~~~~~~~~~~~~~~------- 179 (259)
T 4dz1_A 118 YLVSMANHKITLNNLNELNK----YSIGYPRGMAYSDLIKNDLEP----K-GYYSLS--KVKLYPTYNETMAD------- 179 (259)
T ss_dssp EEEEETTSCCCCCSGGGGGG----SCEEEETTSTHHHHHHHHTGG----G-TSCCGG--GCEEESSHHHHHHH-------
T ss_pred EEEEEcCCCCCCCCHHHhCC----CEEEEeCCcHHHHHHHHhccc----c-cccccc--eeEecCCHHHHHHH-------
Confidence 34444444568999999973 589999999998888775210 0 000000 01123345554444
Q ss_pred ceeecccCCCcEEEechhhhhhhhhhcc-cccCCCccccc-cceeccccCCCCccccccccee
Q psy6615 149 ISAVNVCQGKPEYKWTVAMSLFSMHTHY-RKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHY 209 (227)
Q Consensus 149 i~~v~~~~G~yAFi~es~~leY~~~~~~-~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~ 209 (227)
+... --+|++.+.....|.+.... .....+..... +...+..|+ +|++..||+++
T Consensus 180 ---l~~G-~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~l~~~ln~~l 236 (259)
T 4dz1_A 180 ---LKNG-NLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKG--SPVRDDFNLWL 236 (259)
T ss_dssp ---HHHT-SCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETT--CHHHHHHHHHH
T ss_pred ---HHcC-CCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCC--hHHHHHHHHHH
Confidence 3322 14899999888877654322 11111111111 222333455 38999999988
No 45
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=93.28 E-value=0.024 Score=44.64 Aligned_cols=112 Identities=13% Similarity=-0.016 Sum_probs=67.9
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..+++++||. +.++|+.+|+....+++.... .. . .-..+.+.++++++ + .+|
T Consensus 99 ~~~~~~~dL~----g~~v~~~~g~~~~~~l~~~~~-------~~---~--~~~~~~~~~~~~~~----------l--~~g 150 (227)
T 3tql_A 99 PLTLSKQGLK----GKIIGVQGGTTFDSYLQDSFG-------NS---I--TIQRYPSEEDALMD----------L--TSG 150 (227)
T ss_dssp CCCCSTTTTT----TCEEEEETTSHHHHHHHHHHG-------GG---S--EEEEESSHHHHHHH----------H--TTT
T ss_pred CCCCCHHHhC----CCEEEEEecccHHHHHHHhcc-------cc---c--eEEEcCCHHHHHHH----------H--HcC
Confidence 3348999996 468999999999888877531 00 1 11233455554544 3 234
Q ss_pred C-cEEEechhhhhhhhhhccc--ccCCCccccccc------eeccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 158 K-PEYKWTVAMSLFSMHTHYR--KKSVPNTLVVDL------WTAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~~--~~~~~~~~~~d~------~~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
. +|++.+...+.|.+..... .+.++..+.... ..+..++ +| ++..||+++ .+.+++|.++
T Consensus 151 rvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l----~~l~~~g~~~ 220 (227)
T 3tql_A 151 RVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKG--NQALLLKLNKAL----AAIKANGVYA 220 (227)
T ss_dssp SSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETT--CHHHHHHHHHHH----HHHHHTSHHH
T ss_pred CcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCC--CHHHHHHHHHHH----HHHHhCChHH
Confidence 4 8999999999887765432 221111111111 2333444 55 899999999 7788877664
No 46
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=93.05 E-value=0.055 Score=44.67 Aligned_cols=112 Identities=12% Similarity=0.063 Sum_probs=69.3
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.+|++++||.. .++|+..|+....+++..... .. .-..+.+..+++++ |. +|
T Consensus 137 ~~i~~~~dL~g----~~i~~~~g~~~~~~l~~~~~~----------~~--~i~~~~~~~~~~~~----------l~--~G 188 (272)
T 2pvu_A 137 SPVKNALDLKG----KTIGVQNATTGQEAAEKLFGK----------GP--HIKKFETTVVAIME----------LL--NG 188 (272)
T ss_dssp CCCCSGGGGTT----SCEEEETTSHHHHHHHHHHCS----------ST--TEEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhCC----CeEEEEcCchHHHHHHHhcCC----------CC--eEEEcCCHHHHHHH----------HH--cC
Confidence 45999999963 579999999988887665100 00 01123344454444 32 34
Q ss_pred -CcEEEechhhhhhhhhhccc--ccCCCccc--c-ccceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHYR--KKSVPNTL--V-VDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~~--~~~~~~~~--~-~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+....+|.+..... ++.++... . .+...+..|+ ..++..||+++ .+++++|.++
T Consensus 189 ~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~--~~l~~~l~~~l----~~l~~~g~~~ 254 (272)
T 2pvu_A 189 GVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN--SELKAKVDEAL----KNVINSGKYT 254 (272)
T ss_dssp SCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT--CTTHHHHHHHH----HHHHHTTHHH
T ss_pred CccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC--HHHHHHHHHHH----HHHHhCChHH
Confidence 48999999888887765432 23233221 2 2333344566 78999999999 7888887654
No 47
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=92.98 E-value=0.044 Score=44.49 Aligned_cols=125 Identities=13% Similarity=0.021 Sum_probs=71.1
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCccc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPM 148 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pg 148 (227)
.+++.......|++++||..+ ++.++|+.+|+....++++...+ . .+ -..+.+.++++++
T Consensus 102 ~~~~~~~~~~~i~~~~dL~~~-~g~~i~~~~g~~~~~~l~~~~~~------~----~~--~~~~~~~~~~~~~------- 161 (257)
T 2q88_A 102 AFALKKGNPLGLKSYKDIADN-PDAKIGAPGGGTEEKLALEAGVP------R----DR--VIVVPDGQSGLKM------- 161 (257)
T ss_dssp EEEEETTCTTCCCBHHHHHHC-TTCCEEECTTSHHHHHHHHTTCC------G----GG--EEECSSHHHHHHH-------
T ss_pred EEEEECCCccCCCCHHHHhcc-CCceEEEECCcccHHHHHhcCCC------C----ce--EEEcCCHHHHHHH-------
Confidence 444444433369999999843 25689999999998888765211 0 00 1123345554444
Q ss_pred ceeecccCCCcEEEechhhhhhhhhhccc--ccCCCcccc----ccceeccccCCCCcccccccceeeeCccccccCccc
Q psy6615 149 ISAVNVCQGKPEYKWTVAMSLFSMHTHYR--KKSVPNTLV----VDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKL 222 (227)
Q Consensus 149 i~~v~~~~G~yAFi~es~~leY~~~~~~~--~~~~~~~~~----~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~ 222 (227)
|...+ -+|++.+...+.|.+..... ...+. ++. .....+..++ ...++..||+++ .+.+.+|.+
T Consensus 162 ---l~~gr-vDa~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~-~~~l~~~l~~~l----~~~~~~g~~ 231 (257)
T 2q88_A 162 ---LQDGR-IDVYSLPVLSINDLVSKANDPNVEVLA-PVEGAPVYCDGAAFRKG-DEALRDAFDVEL----AKLKESGEF 231 (257)
T ss_dssp ---HHHTS-CSEEEEEHHHHHHHHHHHCCTTEEEEC-SCBTCCCEEBCCEECGG-GHHHHHHHHHHH----HHHHHHTHH
T ss_pred ---HHcCC-CcEEEcCHHHHHHHHHhCCCcceeeec-ccCCccccceEEEEcCC-CHHHHHHHHHHH----HHHHhCCcH
Confidence 32221 38999999999887765321 11111 111 1112223344 346888888888 667666655
Q ss_pred c
Q psy6615 223 K 223 (227)
Q Consensus 223 ~ 223 (227)
+
T Consensus 232 ~ 232 (257)
T 2q88_A 232 A 232 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=92.66 E-value=0.036 Score=45.03 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=66.8
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..|++++||.. .++|+..|+..+.++....+ . .-..+.+.++++++ +. +|
T Consensus 129 ~~i~~~~dL~g----~~i~~~~g~~~~~~l~~~~~------------~--~~~~~~~~~~~~~~----------l~--~G 178 (268)
T 3qax_A 129 LETPVLPLTQY----SSVAVQTGTYQEHYLLSQPG------------I--CVRSFDSTLEVIME----------VR--YG 178 (268)
T ss_dssp SCSCCCCGGGS----SCEEEETTSHHHHHHHTSTT------------C--CEEEESCHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhCC----CEEEEecCcHHHHHHHhCCC------------c--eEEecCCHHHHHHH----------HH--cC
Confidence 78999999973 47999999998888876211 0 01123344454444 32 23
Q ss_pred -CcEEEechhhhhhhhhhcccccCCCccccccc-----eeccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDL-----WTAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+.....|.+......+..+..+.... ..+..|+ +| ++..||+++ .+.++++.++
T Consensus 179 ~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~l~~~l~~~l----~~l~~~g~~~ 245 (268)
T 3qax_A 179 KSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD--RPEEIQTIQQAI----TDLKSEGVIQ 245 (268)
T ss_dssp SSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT--CHHHHHHHHHHH----HHHHHTTHHH
T ss_pred CCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCC--CHHHHHHHHHHH----HHHHHCCcHH
Confidence 38999999999887754432222222222222 2333454 44 788899988 7777766554
No 49
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=92.64 E-value=0.068 Score=47.18 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=47.5
Q ss_pred ccchhhHHHHHHHHHHhcC-CCCCCCCCchhH------HHHHHHHHHHHHhhhhcceeeEEeec
Q psy6615 17 FHKFSNCVWYIYGALLQQG-GGKLPEADSGRL------VIGTWWLFVLVIVTTYCGNLVAFLTF 73 (227)
Q Consensus 17 ~~~l~~s~w~~~~~l~~qg-~~~~Prs~s~Ri------v~~~W~lf~lilvasYTAnLaA~Lt~ 73 (227)
..++.+++||++.++...| ++..|.+..+|. ++.+|.++.+.+++.-.+.++.++..
T Consensus 222 ~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 222 DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999 788999999984 89999999998888777766655443
No 50
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=92.62 E-value=0.06 Score=42.35 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=66.9
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..|++++||. +.++|+..++....++++.. .. ...+.+..+++++ +. +|
T Consensus 102 ~~~~~~~dL~----g~~i~~~~g~~~~~~l~~~~---~~------------~~~~~~~~~~~~~----------l~--~g 150 (228)
T 2pyy_A 102 GDIRSIDDLP----GKVVATTAGSTAATYLREHH---IS------------VLEVPKIEEAYKA----------LQ--TK 150 (228)
T ss_dssp CCCCSGGGCT----TCEEEEETTSHHHHHHHHTT---CE------------EEEESSHHHHHHH----------HH--TT
T ss_pred CCcCCHHHcC----CCeEEEEcCcHHHHHHHHcC---Cc------------eEecCCHHHHHHH----------HH--cC
Confidence 4799999996 35899999999888887642 00 1123344454444 32 23
Q ss_pred -CcEEEechhhhhhhhhhcc--cccCCCccccc-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHY--RKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~--~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+...+.|.+.... ..+..+..+.. +...+..++ ++++..||+.+ .+.+++|.++
T Consensus 151 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~l----~~l~~~g~~~ 214 (228)
T 2pyy_A 151 KADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNN--SPYRKPINQAL----LNLKENGTYQ 214 (228)
T ss_dssp SSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTT--CTTHHHHHHHH----HHHHHTTHHH
T ss_pred CCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCC--hHHHHHHHHHH----HHHHhCCcHH
Confidence 3799999888888765432 12222222222 222223344 78999999999 7777777654
No 51
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.02 E-value=0.06 Score=44.47 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=65.1
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccC
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQ 156 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~ 156 (227)
...|++++||. +.++|+.+|++...+++.... . . .-..+.+.++++++ |..
T Consensus 128 ~~~i~~~~dL~----g~~i~v~~g~~~~~~l~~~~~-------~----~--~~~~~~~~~~~l~~----------L~~-- 178 (267)
T 3mpk_A 128 PDAPVDADHLD----GRTVALVRNSAAIPLLQRRYP-------Q----A--KVVTADNPSEAMLM----------VAN-- 178 (267)
T ss_dssp TTSCSSGGGCT----TCEEEEETTCTHHHHHHHHCT-------T----S--EEEEESSHHHHHHH----------HHH--
T ss_pred CCCCCCHHHHC----CCEEEEeCCchhHHHHHHhCC-------C----c--EEEEeCCHHHHHHH----------HHc--
Confidence 46789999996 358999999999988876521 0 0 11233455564444 322
Q ss_pred C-CcEEEechhhhhhhhhhcc--cccCCCcc--ccccceeccccCCCCc-ccccccceeeeCccccccC
Q psy6615 157 G-KPEYKWTVAMSLFSMHTHY--RKKSVPNT--LVVDLWTAGVKGLFSP-MRGSINKHYYYSPTEFQDN 219 (227)
Q Consensus 157 G-~yAFi~es~~leY~~~~~~--~~~~~~~~--~~~d~~~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~ 219 (227)
| -+|++.+...++|.+.... .++..+.. ....+..+..|+ +| ++..||+++ .+.+++
T Consensus 179 GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~--~~~l~~~ln~~l----~~l~~~ 241 (267)
T 3mpk_A 179 GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRG--QTELMSILNKAL----YSISND 241 (267)
T ss_dssp TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETT--CHHHHHHHHHHH----HTSCHH
T ss_pred CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCC--CHHHHHHHHHHH----HhCCHH
Confidence 3 3899999999999886522 12211111 112333334454 44 888899888 455444
No 52
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=91.98 E-value=0.071 Score=44.24 Aligned_cols=115 Identities=8% Similarity=0.015 Sum_probs=66.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.+|++++||. +.++|+..|+....+++.... .....+ ....+.+.++++++ +. +|
T Consensus 120 ~~i~sl~dL~----g~~v~~~~g~~~~~~l~~~~~-------~~~~~~--~~~~~~~~~~~~~~----------L~--~G 174 (287)
T 2vha_A 120 GDIKDFADLK----GKAVVVTSGTTSEVLLNKLNE-------EQKMNM--RIISAKDHGDSFRT----------LE--SG 174 (287)
T ss_dssp SSCCSGGGGT----TCEEEEETTSHHHHHHHHHHH-------HTTCCC--EEEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHcC----CCEEEEeCCCcHHHHHHHHhh-------ccCCCc--eEEEcCCHHHHHHH----------HH--cC
Confidence 5799999996 357999999998888776521 000000 11223344554444 32 23
Q ss_pred C-cEEEechhhhhhhhhhcc---cccCCCcccccccee-ccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 158 K-PEYKWTVAMSLFSMHTHY---RKKSVPNTLVVDLWT-AGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~---~~~~~~~~~~~d~~~-~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
. +|++.+...+.|.+.... ..+.++.++....+. +..++ +| ++..||+++ .+.+.+|+++
T Consensus 175 ~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~l~~~l~~~l----~~l~~~g~~~ 240 (287)
T 2vha_A 175 RAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKD--DPQFKKLMDDTI----AQVQTSGEAE 240 (287)
T ss_dssp SCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTT--CHHHHHHHHHHH----HHHHHTTHHH
T ss_pred CeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCC--CHHHHHHHHHHH----HHHHhCchHH
Confidence 3 899999888888765421 222222222222222 23454 44 899999988 6666666543
No 53
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=91.81 E-value=0.039 Score=43.37 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=66.3
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
+.|++++||. +.++|+..|+....+++..... . .-..+.+.++++++ +. +|
T Consensus 99 ~~i~~~~dL~----g~~i~~~~g~~~~~~l~~~~~~----~---------~~~~~~~~~~~~~~----------l~--~g 149 (226)
T 1wdn_A 99 NDVKSVKDLD----GKVVAVKSGTGSVDYAKANIKT----K---------DLRQFPNIDNAYME----------LG--TN 149 (226)
T ss_dssp CSCSSSTTTT----TCEEEEETTSHHHHHHHHHCCC----S---------EEEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhC----CCEEEEEcCCcHHHHHHHhCCC----c---------eEEEeCCHHHHHHH----------HH--cC
Confidence 3699999996 3589999999988888765110 0 01123344554444 32 23
Q ss_pred -CcEEEechhhhhhhhhhcc--cccCCCccccc-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 158 -KPEYKWTVAMSLFSMHTHY--RKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 -~yAFi~es~~leY~~~~~~--~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+....+|.+.... .++.++..... ....+..++ ...++..||+++ .+.+++|.++
T Consensus 150 ~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~-~~~l~~~~~~~l----~~l~~~g~~~ 214 (226)
T 1wdn_A 150 RADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKG-SDELRDKVNGAL----KTLRENGTYN 214 (226)
T ss_dssp SCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTT-CHHHHHHHHHHH----HHHHHTSHHH
T ss_pred CcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCC-CHHHHHHHHHHH----HHHHhCChHH
Confidence 4899999888888765432 12222222211 222333344 236889999998 7777777654
No 54
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=91.62 E-value=0.053 Score=45.55 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=65.3
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
..|++++||. +.++|+..|+....+++.... .. .-..+.+.++++++ +... -
T Consensus 154 ~~i~sl~dL~----gk~v~~~~g~~~~~~l~~~~~-----------~~--~~~~~~~~~~~~~~----------l~~G-~ 205 (291)
T 2yjp_A 154 KPITDMAQLK----DQTLLVNKGTTADAFFTKSHP-----------EV--KLLKFDQNTETFDA----------LKDG-R 205 (291)
T ss_dssp SCCCSGGGGT----TSEEEEETTSHHHHHHHHHCT-----------TS--EEEEESSHHHHHHH----------HHTT-S
T ss_pred CCCCCHHHhC----CCEEEEecCCcHHHHHHHhCC-----------Cc--eEEEeCCHHHHHHH----------HHcC-C
Confidence 3899999996 357999999998888876521 00 01123344454444 3221 1
Q ss_pred CcEEEechhhhhhhhhhcccccCCCccccccce--eccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 158 KPEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLW--TAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~--~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
-+|++.+...+.|.+......+.++..+....+ .+..++ +| ++..||+++ .+.+++|.++
T Consensus 206 vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~l~~~l~~al----~~l~~~g~~~ 268 (291)
T 2yjp_A 206 GVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKG--NADLLNWVNGEI----AAMKKDGRLK 268 (291)
T ss_dssp SSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETT--CHHHHHHHHHHH----HHHHHHSHHH
T ss_pred ccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCC--CHHHHHHHHHHH----HHHHhCChHH
Confidence 389999888888876543222222222222222 222344 44 888999888 7777776554
No 55
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=91.48 E-value=0.063 Score=44.89 Aligned_cols=111 Identities=10% Similarity=0.025 Sum_probs=66.4
Q ss_pred CCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC
Q psy6615 78 TPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG 157 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G 157 (227)
.+|++++||. +.++|+..|+....+++..... . .-..+.+.++++++ +. +|
T Consensus 143 ~~i~~~~dL~----g~~i~~~~g~~~~~~l~~~~~~-----------~--~~~~~~~~~~~~~~----------L~--~G 193 (292)
T 1xt8_A 143 SNITSVEDLK----DKTLLLNKGTTADAYFTQNYPN-----------I--KTLKYDQNTETFAA----------LM--DK 193 (292)
T ss_dssp CCCCSSGGGT----TSEEEEETTSHHHHHHHHHCTT-----------S--EEEEESSHHHHHHH----------HH--TT
T ss_pred CCCCCHHHhC----CCEEEEeCCCcHHHHHHHhCCC-----------c--eEEEcCCHHHHHHH----------HH--cC
Confidence 4899999996 3589999999988888764210 0 01123344454444 32 23
Q ss_pred C-cEEEechhhhhhhhhhcccccCCCccccccce--eccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 158 K-PEYKWTVAMSLFSMHTHYRKKSVPNTLVVDLW--TAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 158 ~-yAFi~es~~leY~~~~~~~~~~~~~~~~~d~~--~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
. +|++.+...+.|.+......+.++..+....+ .+..++ +| ++..||+++ .+.+.+|.++
T Consensus 194 ~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~--~~~l~~~l~~~l----~~l~~~g~~~ 257 (292)
T 1xt8_A 194 RGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKG--DKELKEFIDNLI----IKLGQEQFFH 257 (292)
T ss_dssp SSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETT--CHHHHHHHHHHH----HHHHTTTHHH
T ss_pred CccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCC--CHHHHHHHHHHH----HHHHhCcHHH
Confidence 3 89999999988877543222222222222222 223344 44 889999988 7777776654
No 56
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=90.03 E-value=0.31 Score=38.63 Aligned_cols=110 Identities=10% Similarity=-0.042 Sum_probs=62.8
Q ss_pred CCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCC-Cc
Q psy6615 81 TNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQG-KP 159 (227)
Q Consensus 81 ~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G-~y 159 (227)
++++||. +.++|+.+|+....+++.... . ..++ -..+.+.++++++ |. +| -+
T Consensus 104 ~~~~dL~----g~~v~~~~g~~~~~~l~~~~~-------~--~~~~--~~~~~~~~~~~~~----------l~--~G~vD 156 (239)
T 1lst_A 104 PTLESLK----GKHVGVLQGSTQEAYANDNWR-------T--KGVD--VVAYANQDLIYSD----------LT--AGRLD 156 (239)
T ss_dssp SSHHHHT----TCEEEEETTSHHHHHHHHHTG-------G--GTCE--EEEESSHHHHHHH----------HH--TTSCS
T ss_pred CCHHHhC----CCEEEEEcCccHHHHHHHhcc-------c--CCCe--EEEcCCHHHHHHH----------HH--cCCCC
Confidence 5999996 357999999998888876421 0 0011 1223455554444 32 34 37
Q ss_pred EEEechhhhhh-hhhhcc--cccCCCccccc------cceeccccCCCCc-ccccccceeeeCccccccCcccc
Q psy6615 160 EYKWTVAMSLF-SMHTHY--RKKSVPNTLVV------DLWTAGVKGLFSP-MRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 160 AFi~es~~leY-~~~~~~--~~~~~~~~~~~------d~~~~~~~~~~sp-~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
|++.+.....+ .+.... .++.++.++.. +...+..++ +| ++..||+++ .+.+++|.++
T Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~--~~~l~~~~~~~l----~~l~~~G~~~ 224 (239)
T 1lst_A 157 AALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKD--DTELKAAFDKAL----TELRQDGTYD 224 (239)
T ss_dssp EEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTT--CHHHHHHHHHHH----HHHHHTTHHH
T ss_pred EEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCC--CHHHHHHHHHHH----HHHHHCccHH
Confidence 88888877653 333322 12222222211 233333344 55 999999999 7888877654
No 57
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=86.55 E-value=0.17 Score=40.62 Aligned_cols=104 Identities=9% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccCCC-cEE
Q psy6615 83 VNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQGK-PEY 161 (227)
Q Consensus 83 l~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~G~-yAF 161 (227)
++||. + ++|+.+|+..+.+++.... .-..+.+.++++++ +. +|. +|+
T Consensus 102 ~~dL~----g-~igv~~g~~~~~~l~~~~~---------------~~~~~~~~~~~~~~----------L~--~GrvDa~ 149 (232)
T 3i6v_A 102 GADLS----G-IVAAQTATIQAGYIAESGA---------------TLVEFATPEETIAA----------VR--NGEADAV 149 (232)
T ss_dssp TCCTT----S-EEEEETTSHHHHHHHHSSS---------------EEEEESSHHHHHHH----------HH--TTSSSEE
T ss_pred hHHhC----C-CEEEecCchHHHHHHhcCC---------------eEEEeCCHHHHHHH----------HH--cCCcCEE
Confidence 66774 6 8999999998888877510 01223455565544 32 233 899
Q ss_pred Eechhhhhhhhhhc-ccccCCCcc-cc-ccceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 162 KWTVAMSLFSMHTH-YRKKSVPNT-LV-VDLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 162 i~es~~leY~~~~~-~~~~~~~~~-~~-~d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
+.+...+.|.+... ...+.++.. .. .+...+..|+ ...++..||+++ .+.++++.++
T Consensus 150 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~l~~~ln~~l----~~l~~~G~~~ 209 (232)
T 3i6v_A 150 FADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRES-DGELRGKFDAAI----TSMKEDGTLN 209 (232)
T ss_dssp EEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTT-CHHHHHHHHHHH----HHHHHTSHHH
T ss_pred EEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCC-CHHHHHHHHHHH----HHHHHCChHH
Confidence 99999999987654 222222211 11 1233333444 335899999999 7777777654
No 58
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=84.78 E-value=0.34 Score=40.38 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=65.4
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccC
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQ 156 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~ 156 (227)
..+|++++||. +.++|+..++....+++... .. + ..+.+..+.+++ +...
T Consensus 153 ~~~i~s~~dL~----G~~v~v~~g~~~~~~l~~~~---~~--------~----~~~~~~~~~~~~----------l~~g- 202 (283)
T 2yln_A 153 DSNIKSIADIK----GVKTAQSLTSNYGEKAKAAG---AQ--------L----VPVDGLAQSLTL----------IEQK- 202 (283)
T ss_dssp TCSCCSGGGCT----TSEEEECTTSHHHHHHHHTT---CE--------E----EECSSHHHHHHH----------HHTT-
T ss_pred CCCCCCHHHhC----CCEEEEecCchHHHHHHHcC---Ce--------E----EEeCCHHHHHHH----------HHcC-
Confidence 35599999995 45899999998888776541 00 0 112233443333 3221
Q ss_pred CCcEEEechhhhhhhhhhccc--ccCCC-cccc-c-cceeccccCCCCcccccccceeeeCccccccCcccc
Q psy6615 157 GKPEYKWTVAMSLFSMHTHYR--KKSVP-NTLV-V-DLWTAGVKGLFSPMRGSINKHYYYSPTEFQDNPKLK 223 (227)
Q Consensus 157 G~yAFi~es~~leY~~~~~~~--~~~~~-~~~~-~-d~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~~~~ 223 (227)
.-+|++.+...+.|.+..... .+.++ ..+. . ....+..|+ ...++..||+.+ .+++++|.++
T Consensus 203 ~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~-~~~l~~~i~~al----~~l~~~g~~~ 269 (283)
T 2yln_A 203 RADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKG-NDEAVAKFSTAI----NELKADGTLK 269 (283)
T ss_dssp SCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESS-CHHHHHHHHHHH----HHHHHTTHHH
T ss_pred CCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCC-CHHHHHHHHHHH----HHHHHCCcHH
Confidence 138899999888887654321 22222 2222 2 222233454 234799999999 7777777654
No 59
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=84.33 E-value=0.2 Score=41.39 Aligned_cols=118 Identities=8% Similarity=-0.079 Sum_probs=64.1
Q ss_pred EEeecCCCCCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccc--cccccCCc
Q psy6615 69 AFLTFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVG--LNVVHPDI 146 (227)
Q Consensus 69 A~Lt~~~~~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~eg--v~~v~~d~ 146 (227)
++++.......|++++||. +.++|+.+|+....+++... . .+ ..+.+..++ +++
T Consensus 113 ~l~~~~~~~~~i~~~~dL~----g~~i~v~~g~~~~~~l~~~~-----~------~~----~~~~~~~~~~l~~~----- 168 (271)
T 2iee_A 113 TAIVRKDDLSGIKTLKDLK----GKKAAGAATTVYMEVARKYG-----A------KE----VIYDNATNEQYLKD----- 168 (271)
T ss_dssp EEEECTTTGGGCSSGGGGT----TCEEESCTTSHHHHHHHHTT-----C------EE----EECSSCCHHHHHHH-----
T ss_pred EEEEECCCCCCCCCHHHhC----CCEEEEeCCccHHHHHHHcC-----C------ce----EEeCChhhHHHHHH-----
Confidence 4444433223799999996 45899999999888886531 1 11 123344443 333
Q ss_pred ccceeecccCCC-cEEEechhhhhhhhh-hcc--cccCC-Ccccccc-ceeccccCCCCcccccccceeeeCccccccCc
Q psy6615 147 PMISAVNVCQGK-PEYKWTVAMSLFSMH-THY--RKKSV-PNTLVVD-LWTAGVKGLFSPMRGSINKHYYYSPTEFQDNP 220 (227)
Q Consensus 147 pgi~~v~~~~G~-yAFi~es~~leY~~~-~~~--~~~~~-~~~~~~d-~~~~~~~~~~sp~r~~i~~~~~~~~~~~~~~~ 220 (227)
+.. |. + ++.+.....+.+. ... ..+.+ +..+... ...+..|+ ...++..||+++ .+.+++|
T Consensus 169 -----L~~--GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~l~~~ln~al----~~l~~~G 235 (271)
T 2iee_A 169 -----VAN--GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKS-NAALQKKMNEAL----KEMSKDG 235 (271)
T ss_dssp -----HHH--TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETT-CHHHHHHHHHHH----HHHHHHT
T ss_pred -----HHc--CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCC-CHHHHHHHHHHH----HHHHHCC
Confidence 333 44 5 6666666555443 211 22222 2222222 23333454 224889999988 6776666
Q ss_pred ccc
Q psy6615 221 KLK 223 (227)
Q Consensus 221 ~~~ 223 (227)
.++
T Consensus 236 ~~~ 238 (271)
T 2iee_A 236 SLT 238 (271)
T ss_dssp HHH
T ss_pred CHH
Confidence 543
No 60
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=84.26 E-value=0.42 Score=42.62 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCccchhhHHHHHHHHHHhcC-CCCCCC--CCchhHHHHHHHHHHHHHhhhhcceeeEEeecCC
Q psy6615 15 SGFHKFSNCVWYIYGALLQQG-GGKLPE--ADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75 (227)
Q Consensus 15 ~~~~~l~~s~w~~~~~l~~qg-~~~~Pr--s~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~ 75 (227)
....++.+++||++.+++..| ++..|. +..||+++.+=.+..+++.+.-++-+.|-++.++
T Consensus 87 ~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 87 TNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp SCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred ccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 345689999999999999999 677785 6789999999999999999999998888877765
No 61
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=78.60 E-value=0.85 Score=40.71 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=51.9
Q ss_pred CccchhhHHHHHHHHHHhcC-CCCC--CCCCchhHHHHHHHHHHHHHhhhhcceeeEEeecCC
Q psy6615 16 GFHKFSNCVWYIYGALLQQG-GGKL--PEADSGRLVIGTWWLFVLVIVTTYCGNLVAFLTFPM 75 (227)
Q Consensus 16 ~~~~l~~s~w~~~~~l~~qg-~~~~--Prs~s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~~ 75 (227)
+..++.+++||++.+++..| ++.. |.++.+++++.+=.+..+++.+.-++-+.|-++.++
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45689999999999999999 4555 468999999999999999999999988888887775
No 62
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=73.95 E-value=1 Score=38.13 Aligned_cols=58 Identities=10% Similarity=0.250 Sum_probs=41.4
Q ss_pred ccchhhHHHHHHHHHHhcC-C-CCC-CCCC----chhHHHHHHHHHHHHHhhhhcceeeEEeecC
Q psy6615 17 FHKFSNCVWYIYGALLQQG-G-GKL-PEAD----SGRLVIGTWWLFVLVIVTTYCGNLVAFLTFP 74 (227)
Q Consensus 17 ~~~l~~s~w~~~~~l~~qg-~-~~~-Prs~----s~Riv~~~W~lf~lilvasYTAnLaA~Lt~~ 74 (227)
--++.+++|+++.+++..| + +.. |... ++++++.+..+..+++++.++|-+++.....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999887 4 442 4333 3466777777778999999999888765543
No 63
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=66.06 E-value=2.1 Score=33.91 Aligned_cols=106 Identities=7% Similarity=-0.007 Sum_probs=55.2
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHHhccCCCchhhhhhhhhhcccccccccccccccccCCcccceeecccC
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQYKIVGVVNVLPAIVGLNVVHPDIPMISAVNVCQ 156 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~s~~~~~~~yk~m~~~m~~~~~~v~~~~egv~~v~~d~pgi~~v~~~~ 156 (227)
..+|++++||.. .++|+..++....+++... +.. .+.-....+.+..+.+++ +...
T Consensus 137 ~~~i~~~~dL~g----~~i~~~~g~~~~~~~~~~~-------~~~--g~~~~~~~~~~~~~~~~~----------l~~g- 192 (259)
T 2v25_A 137 EKKYKSLADMKG----ANIGVAQAATTKKAIGEAA-------KKI--GIDVKFSEFPDYPSIKAA----------LDAK- 192 (259)
T ss_dssp GGCCCSGGGCTT----CEEEEETTCSHHHHHHHHH-------HHT--TCCCEEEEESSHHHHHHH----------HHTT-
T ss_pred CCCCCCHHHhCC----CEEEEecCCchHHHHHHHH-------Hhc--CCceeEEEeCCHHHHHHH----------HHcC-
Confidence 357899999973 4789999988887776531 100 000001123333443333 3221
Q ss_pred CCcEEEechhhhhhhhhhcccccCCCccccc-cceeccccCCCCccccccccee
Q psy6615 157 GKPEYKWTVAMSLFSMHTHYRKKSVPNTLVV-DLWTAGVKGLFSPMRGSINKHY 209 (227)
Q Consensus 157 G~yAFi~es~~leY~~~~~~~~~~~~~~~~~-d~~~~~~~~~~sp~r~~i~~~~ 209 (227)
.-+|++.+.....+.+..... ..+..+.. ....+..|+ ...++..||+.+
T Consensus 193 ~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~-~~~l~~~~~~~l 243 (259)
T 2v25_A 193 RVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKD-DPAFAKYVDDFV 243 (259)
T ss_dssp SSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETT-CHHHHHHHHHHH
T ss_pred CCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCC-CHHHHHHHHHHH
Confidence 238888888888876543221 12222211 122222344 225777777776
No 64
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=26.51 E-value=33 Score=29.02 Aligned_cols=29 Identities=3% Similarity=0.102 Sum_probs=21.9
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHH
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQT 109 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~ 109 (227)
..+|++++||.. .++|+..++..+.++..
T Consensus 108 ~s~i~s~~DLkG----k~I~v~~gs~~~~~~~~ 136 (348)
T 3uif_A 108 NSTAKSIKDLKG----KKIALHRGRPWELAFSN 136 (348)
T ss_dssp TCCCCSGGGGTT----SEEEECTTSTHHHHHHH
T ss_pred CCCCCCHHHcCC----CEEEecCCChHHHHHHH
Confidence 467999999973 47899888887665543
No 65
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=22.78 E-value=46 Score=27.24 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHH
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQT 109 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~ 109 (227)
..+|++++||.. .++|+..+++.+.+++.
T Consensus 95 ~s~i~s~~DL~G----k~i~~~~~~~~~~~~~~ 123 (302)
T 3ix1_A 95 EQDFDSPADLVG----LTVGYPGIPVNEPILKT 123 (302)
T ss_dssp GGCCSSGGGGTT----SEEEECSCTTHHHHHHH
T ss_pred CCCCCChHHcCC----CEEEeCCCcchHHHHHH
Confidence 368999999974 47899988876655443
No 66
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=20.75 E-value=79 Score=25.94 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=19.8
Q ss_pred CCCCCHHHHhhCCCceeEEEe-cCchHHHHHH
Q psy6615 78 TPVTNVNELLENKWRLSWGMS-EFSTLHTTLQ 108 (227)
Q Consensus 78 ~~I~sl~DL~~q~~~i~~G~~-~gs~~~~~f~ 108 (227)
.+|++++||.. .++|+. .++..+.+++
T Consensus 128 ~~i~s~~DL~G----k~i~~~~~gs~~~~~~~ 155 (346)
T 3qsl_A 128 PGYKGPADLKG----RKIGVTAPGSSTNMVVN 155 (346)
T ss_dssp TTCCSGGGGTT----CEEEESSTTSHHHHHHH
T ss_pred cCCCChHHcCC----CEEEECCCCcHHHHHHH
Confidence 38999999963 489998 5766555443
No 67
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=20.58 E-value=1e+02 Score=25.50 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=21.8
Q ss_pred CCCCCCHHHHhhCCCceeEEEecCchHHHHHHH
Q psy6615 77 DTPVTNVNELLENKWRLSWGMSEFSTLHTTLQT 109 (227)
Q Consensus 77 ~~~I~sl~DL~~q~~~i~~G~~~gs~~~~~f~~ 109 (227)
..+|++++||.. .++|+..++..+.++..
T Consensus 120 ~s~I~s~~DLkG----k~i~v~~gs~~~~~~~~ 148 (324)
T 3ksx_A 120 KSALRTVADLKG----KRIAFQKGSSAHNLLLR 148 (324)
T ss_dssp TCSCCSGGGGTT----CEEEECTTSHHHHHHHH
T ss_pred CCCCCCHHHhCC----CEEEecCCChHHHHHHH
Confidence 468999999973 47898888877665543
Done!