RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6615
         (227 letters)



>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
           glycoprotein, transport, membrane, postsynaptic cell
           membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
           norvegicus}
          Length = 823

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 12  REQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVIGTWWLFVLVIVTTYCGNLVAFL 71
            E +      N +W+  GA +QQG    P + SGR+V G WW F L+I+++Y  NL AFL
Sbjct: 556 SESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 615

Query: 72  TFPMMDTPVTNVNELLENKWRLSWGMSEFSTLHTTLQTARSKGSSVHSICWQY 124
           T   M +P+ +  +L +    +++G  +  +        R    +V    W Y
Sbjct: 616 TVERMVSPIESAEDLSKQTE-IAYGTLDSGSTKEFF---RRSKIAVFDKMWTY 664


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 42/206 (20%), Positives = 62/206 (30%), Gaps = 79/206 (38%)

Query: 8   HYKI-REQSGFHKFSNCVWYIYGALLQQGGGKLPEADSGRLVI---GTW----------- 52
           HY +  +  GF        Y+ GA     G  L  A    + I    +W           
Sbjct: 248 HYVVTAKLLGFT-PGELRSYLKGATGHSQG--LVTA----VAIAETDSWESFFVSVRKAI 300

Query: 53  -WLFVLVIVTTYCGNLVAFLTFPMMDTPVTNVNELLENK-----WRLS-WGMSEFSTLHT 105
             LF       + G +  +  +P    P + + + LEN        LS   ++       
Sbjct: 301 TVLF-------FIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT-----QE 347

Query: 106 TLQTARSKGSSVHSICWQYKIVGVVNV-LPAIVGLNVVHPDIPMISAVN-----VCQGKP 159
            +Q                  V   N  LPA      V      IS VN     V  G P
Sbjct: 348 QVQ----------------DYVNKTNSHLPAG---KQVE-----ISLVNGAKNLVVSGPP 383

Query: 160 EYKWTVAMSLFSMHTHYRKKSVPNTL 185
           +       SL+ ++   RK   P+ L
Sbjct: 384 Q-------SLYGLNLTLRKAKAPSGL 402


>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
           seattle structural genomics center for infectious
           disease, ssgcid; 2.00A {Bartonella henselae}
          Length = 497

 Score = 29.4 bits (67), Expect = 0.83
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 6/28 (21%)

Query: 128 GVVNVLP---AIVG--LNVVHPDIPMIS 150
           GV N++    A VG  L   HPD+ MIS
Sbjct: 219 GVFNLINGDGANVGSYL-SAHPDLEMIS 245


>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
           PSI-biology, midwest center for structu genomics, MCSG;
           HET: MSE; 2.40A {Staphylococcus aureus}
          Length = 478

 Score = 29.0 bits (66), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 6/28 (21%)

Query: 128 GVVNVLP---AIVG--LNVVHPDIPMIS 150
           GV N++    A VG  L   HP + M+S
Sbjct: 197 GVFNLVNGDGAGVGNPL-SEHPKVRMMS 223


>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
           PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
           {Mycobacterium tuberculosis}
          Length = 495

 Score = 28.6 bits (65), Expect = 1.6
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 5/27 (18%)

Query: 128 GVVNVLPA--IVG--LNVVHPDIPMIS 150
           GV++V+P     G  L   +PDI M +
Sbjct: 204 GVLSVVPGGIETGQAL-TSNPDIDMFT 229


>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; NMR {Homo sapiens}
          Length = 121

 Score = 25.8 bits (57), Expect = 6.9
 Identities = 5/25 (20%), Positives = 14/25 (56%)

Query: 198 FSPMRGSINKHYYYSPTEFQDNPKL 222
           F  M+ ++  + Y +  +F+++  L
Sbjct: 50  FFTMKQNLEAYRYLNFDDFEEDFNL 74


>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
           bundle, transcription; NMR {Homo sapiens}
          Length = 117

 Score = 25.7 bits (57), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 198 FSPMRGSINKHYYYSPTEFQDNPKL 222
           FS M+  I  + Y S  E +DN KL
Sbjct: 51  FSTMKEKIKNNDYQSIEELKDNFKL 75


>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
           isoform 1, LAVS3040, rhabdomyosarcoma antigen
           MU-RMS-40.8; 2.23A {Homo sapiens}
          Length = 123

 Score = 25.4 bits (56), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 198 FSPMRGSINKHYYYSPTEFQDNPKL 222
           F  M+  I  + Y S TEF+ + KL
Sbjct: 56  FGTMKDKIVANEYKSVTEFKADFKL 80


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,609,389
Number of extensions: 197694
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 23
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)