RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6615
         (227 letters)



>d2euca1 a.249.1.1 (A:1-113) Hypothetical protein YfmB {Bacillus
           subtilis [TaxId: 1423]}
          Length = 113

 Score = 24.9 bits (54), Expect = 4.6
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 60  VTTYCGNLVAFLTFPMMDTPVTNVNELLENK 90
           ++ Y   L+ ++T  M +T   N +  L  +
Sbjct: 73  LSGYLSTLLPYVTADMFETSKANAHAFLSRR 103


>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 102

 Score = 24.0 bits (52), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 143 HP-DIPMISAVNVCQGKPEY-KW 163
           HP D+P I  ++V     +Y KW
Sbjct: 73  HPYDVPAIIRIDVDDVNEDYLKW 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 906,912
Number of extensions: 39121
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 9
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)