BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6616
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 55/63 (87%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
G+ Y +AAAYIQ QFE+KN+S KEIYCHMTCATDTNNIQ VFDAVTD+IIANNLRGC
Sbjct: 271 PGSNTYEDAAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIANNLRGC 330
Query: 69 GLY 71
GLY
Sbjct: 331 GLY 333
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 277 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 336
Query: 68 CGLY 71
CGL+
Sbjct: 337 CGLF 340
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE N+ TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 260 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 319
Query: 68 CGLY 71
CGLY
Sbjct: 320 CGLY 323
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE N+ TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 267 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326
Query: 68 CGLY 71
CGLY
Sbjct: 327 CGLY 330
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE N+ TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 267 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326
Query: 68 CGLY 71
CGLY
Sbjct: 327 CGLY 330
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68 CGLY 71
CGL+
Sbjct: 350 CGLF 353
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 291 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 350
Query: 68 CGLY 71
CGL+
Sbjct: 351 CGLF 354
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68 CGLY 71
CGL+
Sbjct: 350 CGLF 353
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 260 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 319
Query: 68 CGLY 71
CGL+
Sbjct: 320 CGLF 323
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 262 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 321
Query: 68 CGLY 71
CGL+
Sbjct: 322 CGLF 325
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 264 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 323
Query: 68 CGLY 71
CGL+
Sbjct: 324 CGLF 327
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 266 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 325
Query: 68 CGLY 71
CGL+
Sbjct: 326 CGLF 329
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 267 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 326
Query: 68 CGLY 71
CGL+
Sbjct: 327 CGLF 330
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 265 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 324
Query: 68 CGLY 71
CGL+
Sbjct: 325 CGLF 328
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68 CGLY 71
CGL+
Sbjct: 350 CGLF 353
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68 CGLY 71
CGL+
Sbjct: 350 CGLF 353
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349
Query: 68 CGLY 71
CGL+
Sbjct: 350 CGLF 353
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 291 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 350
Query: 68 CGLY 71
CGL+
Sbjct: 351 CGLF 354
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 261 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 320
Query: 68 CGLY 71
CGL+
Sbjct: 321 CGLF 324
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 262 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 321
Query: 68 CGLY 71
CGL+
Sbjct: 322 CGLF 325
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 265 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 324
Query: 68 CGLY 71
CGL+
Sbjct: 325 CGLF 328
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII NNL
Sbjct: 293 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLPD 352
Query: 68 CGLY 71
CGL+
Sbjct: 353 CGLF 356
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATD N+QFVFDAVTDVII NNL+
Sbjct: 297 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDAKNVQFVFDAVTDVIIKNNLKD 356
Query: 68 CGLY 71
CGL+
Sbjct: 357 CGLF 360
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+ FVFDAVTDVII NNL+
Sbjct: 291 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVCFVFDAVTDVIIKNNLKD 350
Query: 68 CGLY 71
CGL+
Sbjct: 351 CGLF 354
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
+G+ Y EAAAYIQ QFE N+ TKEIY H TCATDT N+QFVFDAVTDVII NNL+
Sbjct: 290 TGSNTYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EA YI+ QF E + KEIY HMTCATDT N++FVFDAVTD+II NL+
Sbjct: 293 AGSNTYEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD 352
Query: 68 CGLY 71
CGL+
Sbjct: 353 CGLF 356
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EA YI+ QF E + KEIY HMTCATDT N++FVFDAVTD+II NL+
Sbjct: 262 AGSNTYEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD 321
Query: 68 CGLY 71
CGL+
Sbjct: 322 CGLF 325
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G Y +A YI+ QF E + KEIY HMTCATDT N++FVFDAVTD+II NL+
Sbjct: 261 NGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKD 320
Query: 68 CGLY 71
CGL+
Sbjct: 321 CGLF 324
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 9 SGAQEYGEAAAYIQAQF-EAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67
+G+ Y EA YI+ QF E + KEIY H TCATDT N++FVFDAVTD+II NL+
Sbjct: 287 AGSNTYEEAGNYIKVQFLELNXRRDVKEIYSHXTCATDTQNVKFVFDAVTDIIIKENLKD 346
Query: 68 CGLY 71
CGL+
Sbjct: 347 CGLF 350
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIAN 63
+G+ Y EAAAYIQ QFE NK TKEIY H TC+TDT N+QFVFDAVTDVII N
Sbjct: 260 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIKN 315
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Query: 9 SGAQEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVII 61
+G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVII
Sbjct: 259 AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 312
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3 YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
YF E G Q +AA +I F N + K IY H TCATDT NI+FVF AV D I+
Sbjct: 279 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 337
Query: 62 ANNLR 66
NL+
Sbjct: 338 QLNLK 342
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3 YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
YF E G Q +AA +I F N + K IY H TCATDT NI+FVF AV D I+
Sbjct: 285 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 343
Query: 62 ANNLR 66
NL+
Sbjct: 344 QLNLK 348
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3 YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
YF E G Q +AA +I F N + K IY H TCATDT NI+FVF AV D I+
Sbjct: 287 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 345
Query: 62 ANNLR 66
NL+
Sbjct: 346 QLNLK 350
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3 YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
YF E G Q +AA +I F N + K IY H TCATDT NI+FVF AV D I+
Sbjct: 259 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317
Query: 62 ANNLR 66
NL+
Sbjct: 318 QLNLK 322
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 3 YFTELLSGAQEYGEAA-AYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
YF E G Q +AA +I F N + K IY H TCATDT NI+FVF AV D I+
Sbjct: 285 YFPEY-DGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 343
Query: 62 ANNLR 66
NL+
Sbjct: 344 QLNLK 348
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
K+F + + Y+ F+ K ++ +K ++ H T A DT NI+FVF AV D I+
Sbjct: 290 KHFPDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTIL 349
Query: 62 ANNLR 66
NL+
Sbjct: 350 QENLK 354
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 YFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKE-IYCHMTCATDTNNIQFVFDAVTDVII 61
YF E + ++ F K + + +Y H T A +T NI+ VF V D I+
Sbjct: 293 YFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352
Query: 62 ANNLR 66
+NL+
Sbjct: 353 HDNLK 357
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 YFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKE-IYCHMTCATDTNNIQFVFDAVTDVII 61
YF E + ++ F K + + +Y H T A +T NI+ VF V D I+
Sbjct: 269 YFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 328
Query: 62 ANNLR 66
+NL+
Sbjct: 329 HDNLK 333
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 3 YFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKE-IYCHMTCATDTNNIQFVFDAVTDVII 61
YF E + ++ F K + + +Y H T A +T NI+ VF V D I+
Sbjct: 269 YFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 328
Query: 62 ANNLR 66
+NL+
Sbjct: 329 HDNLK 333
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
Y H TCA DT NI+ VF+ D+I +LR
Sbjct: 360 YPHFTCAVDTENIRRVFNDCRDIIQRMHLR 389
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
Y H TCA DT NI+ VF+ D+I +LR
Sbjct: 346 YPHFTCAVDTENIRRVFNDCRDIIQRMHLR 375
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 33.1 bits (74), Expect = 0.035, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
Y H TCA DT NI+ VF+ D+I +LR
Sbjct: 360 YPHFTCAVDTENIRRVFNDCRDIIQRMHLR 389
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 33.1 bits (74), Expect = 0.035, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
Y H TCA DT NI+ VF+ D+I +LR
Sbjct: 346 YPHFTCAVDTENIRRVFNDCRDIIQRMHLR 375
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 33.1 bits (74), Expect = 0.035, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
Y H TCA DT NI+ VF+ D+I +LR
Sbjct: 360 YPHFTCAVDTENIRRVFNDCRDIIQRMHLR 389
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 2 KYFTELLSG---AQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTD 58
+Y +L +G +E + A A E + +++Y + T ATD +NI+ VF D
Sbjct: 268 QYIQQLFTGKLQTEEXNISGADGTANIEG---AVNEKVYTNPTNATDGSNIKRVFXLAVD 324
Query: 59 VIIAN 63
VI N
Sbjct: 325 VIXKN 329
>pdb|2J68|A Chain A, Bacterial Dynamin-Like Protein Bdlp, Gdp Bound
pdb|2J69|A Chain A, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|B Chain B, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|C Chain C, Bacterial Dynamin-like Protein Bdlp
pdb|2J69|D Chain D, Bacterial Dynamin-like Protein Bdlp
pdb|2W6D|A Chain A, Bacterial Dynamin-Like Protein Lipid Tube Bound
pdb|2W6D|B Chain B, Bacterial Dynamin-Like Protein Lipid Tube Bound
Length = 695
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 4 FTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNN 48
F EL A +YG A+Y Q + K T K++ H T + +N
Sbjct: 471 FKELSRSASQYG--ASYNQITDQITEKLTGKDVKVHTTTTAEEDN 513
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR
Recognition Sequence
pdb|3BX3|B Chain B, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR
Recognition Sequence
Length = 335
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 48 NIQFVFDAVTD--VIIANNLRGC 68
N QF+FDA++D + IA + GC
Sbjct: 148 NFQFIFDAISDSCIDIATHRHGC 170
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From
Saccharomyces Cerevisiae
Length = 333
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 48 NIQFVFDAVTD--VIIANNLRGC 68
N QF+FDA++D + IA + GC
Sbjct: 148 NFQFIFDAISDSCIDIATHRHGC 170
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3'
Utr Recognition Sequence
pdb|3BX2|B Chain B, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3'
Utr Recognition Sequence
Length = 335
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 48 NIQFVFDAVTD--VIIANNLRGC 68
N QF+FDA++D + IA + GC
Sbjct: 148 NFQFIFDAISDSCIDIATHRHGC 170
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
pdb|4DZS|B Chain B, Crystal Structure Of Yeast Puf4p Rna Binding Domain In
Complex With Ho-4be Mutant Rna
Length = 357
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 48 NIQFVFDAVTD--VIIANNLRGC 68
N QF+FDA++D + IA + GC
Sbjct: 170 NFQFIFDAISDSCIDIATHRHGC 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,819,939
Number of Sequences: 62578
Number of extensions: 48589
Number of successful extensions: 226
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 51
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)