Query psy6616
Match_columns 71
No_of_seqs 101 out of 596
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:40:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 99.8 8.8E-20 3E-24 127.0 7.0 69 2-71 258-327 (327)
2 4fid_A G protein alpha subunit 99.8 1.6E-19 5.4E-24 126.3 6.4 68 2-71 252-336 (340)
3 1zcb_A G alpha I/13; GTP-bindi 99.6 3.3E-15 1.1E-19 104.7 7.0 68 2-71 292-361 (362)
4 1azs_C GS-alpha; complex (lyas 99.6 1.4E-15 4.9E-20 108.2 4.7 69 2-71 310-394 (402)
5 1cip_A Protein (guanine nucleo 99.5 1.3E-14 4.6E-19 101.4 7.4 69 2-71 284-353 (353)
6 2xtz_A Guanine nucleotide-bind 99.5 1.7E-14 5.9E-19 100.9 5.2 69 2-71 276-354 (354)
7 2dce_A KIAA1915 protein; swirm 86.2 0.46 1.6E-05 28.3 2.3 49 2-55 33-93 (111)
8 2fq3_A Transcription regulator 80.9 0.26 8.7E-06 29.2 -0.4 26 2-27 31-62 (104)
9 1ky3_A GTP-binding protein YPT 72.4 4.8 0.00017 23.2 3.6 30 36-65 152-181 (182)
10 2g6b_A RAS-related protein RAB 68.5 4.9 0.00017 23.2 3.0 31 36-66 148-178 (180)
11 2hxs_A RAB-26, RAS-related pro 67.2 4.4 0.00015 23.4 2.6 31 36-66 147-177 (178)
12 2x77_A ADP-ribosylation factor 64.5 12 0.00042 21.9 4.3 31 35-65 157-187 (189)
13 1moz_A ARL1, ADP-ribosylation 62.0 20 0.00069 20.6 5.1 29 35-63 153-181 (183)
14 4bas_A ADP-ribosylation factor 61.0 16 0.00054 21.4 4.4 31 34-64 161-191 (199)
15 2oil_A CATX-8, RAS-related pro 59.9 14 0.00048 21.7 4.0 29 36-64 162-190 (193)
16 2fu5_C RAS-related protein RAB 57.6 14 0.00048 21.3 3.7 31 36-66 145-175 (183)
17 1z0f_A RAB14, member RAS oncog 57.0 9.4 0.00032 21.8 2.8 27 36-62 152-178 (179)
18 3llu_A RAS-related GTP-binding 56.9 8.4 0.00029 23.0 2.6 27 33-60 169-195 (196)
19 1upt_A ARL1, ADP-ribosylation 56.4 19 0.00063 20.4 4.0 29 34-62 141-169 (171)
20 2a9k_A RAS-related protein RAL 56.1 15 0.0005 21.1 3.6 30 36-65 155-184 (187)
21 3bc1_A RAS-related protein RAB 55.9 15 0.00052 21.1 3.6 29 37-65 160-188 (195)
22 2a5j_A RAS-related protein RAB 55.8 15 0.00053 21.6 3.7 29 36-64 158-186 (191)
23 2j1l_A RHO-related GTP-binding 55.8 14 0.00047 22.4 3.5 29 37-65 184-212 (214)
24 2lkc_A Translation initiation 54.8 20 0.00068 20.5 4.0 32 36-67 145-176 (178)
25 1ksh_A ARF-like protein 2; sma 54.4 29 0.001 20.0 4.8 30 34-63 152-181 (186)
26 2rbg_A Putative uncharacterize 53.6 11 0.00036 22.8 2.6 45 15-62 15-59 (126)
27 3tw8_B RAS-related protein RAB 53.2 20 0.00069 20.4 3.8 31 37-67 146-176 (181)
28 3clv_A RAB5 protein, putative; 53.0 30 0.001 19.8 5.7 28 36-63 178-205 (208)
29 2atv_A RERG, RAS-like estrogen 52.4 17 0.0006 21.4 3.6 29 36-64 164-193 (196)
30 3t1o_A Gliding protein MGLA; G 50.8 20 0.00069 20.7 3.6 28 37-64 167-194 (198)
31 1r8s_A ADP-ribosylation factor 49.0 20 0.00068 20.1 3.3 28 35-62 135-162 (164)
32 1p15_A Protein-tyrosine phosph 48.0 40 0.0014 21.6 5.0 52 4-56 148-199 (253)
33 3con_A GTPase NRAS; structural 47.9 22 0.00076 20.7 3.5 30 37-66 158-187 (190)
34 2iwr_A Centaurin gamma 1; ANK 47.9 34 0.0012 19.5 4.3 30 36-65 143-172 (178)
35 1g16_A RAS-related protein SEC 47.6 25 0.00087 19.7 3.6 27 37-63 140-166 (170)
36 2bov_A RAla, RAS-related prote 47.1 25 0.00086 20.6 3.7 29 37-65 152-180 (206)
37 2fv8_A H6, RHO-related GTP-bin 47.1 17 0.00056 21.8 2.8 29 37-65 175-203 (207)
38 2q3h_A RAS homolog gene family 47.0 22 0.00077 20.9 3.4 29 37-65 170-198 (201)
39 1wms_A RAB-9, RAB9, RAS-relate 47.0 25 0.00086 20.0 3.6 28 36-63 148-175 (177)
40 2il1_A RAB12; G-protein, GDP, 47.0 31 0.001 20.3 4.0 27 36-62 164-190 (192)
41 1z08_A RAS-related protein RAB 46.3 21 0.00071 20.1 3.1 27 36-62 143-169 (170)
42 2hup_A RAS-related protein RAB 45.8 26 0.00089 20.9 3.6 28 37-64 168-195 (201)
43 2gf9_A RAS-related protein RAB 45.5 27 0.00091 20.4 3.6 27 37-63 160-186 (189)
44 1z2a_A RAS-related protein RAB 45.4 16 0.00054 20.6 2.5 26 37-62 142-167 (168)
45 2fn4_A P23, RAS-related protei 45.3 28 0.00097 19.7 3.6 29 36-64 146-174 (181)
46 1u8z_A RAS-related protein RAL 45.3 24 0.00083 19.6 3.3 27 36-62 141-167 (168)
47 3kkq_A RAS-related protein M-R 45.2 26 0.00089 20.1 3.5 25 38-62 157-182 (183)
48 2bme_A RAB4A, RAS-related prot 43.7 36 0.0012 19.5 3.9 28 36-63 147-174 (186)
49 1x3s_A RAS-related protein RAB 43.5 29 0.00098 20.1 3.5 28 36-63 152-179 (195)
50 2j0v_A RAC-like GTP-binding pr 43.5 23 0.00078 21.1 3.1 28 37-64 155-182 (212)
51 2gco_A H9, RHO-related GTP-bin 43.5 23 0.00079 21.0 3.1 26 37-62 175-200 (201)
52 3q72_A GTP-binding protein RAD 43.0 34 0.0012 19.2 3.7 27 37-63 139-165 (166)
53 2bcg_Y Protein YP2, GTP-bindin 42.0 31 0.0011 20.4 3.5 27 37-63 146-172 (206)
54 3c5c_A RAS-like protein 12; GD 41.8 23 0.00078 20.9 2.9 26 37-62 160-186 (187)
55 3reg_A RHO-like small GTPase; 41.7 24 0.00084 20.6 3.0 28 38-65 164-191 (194)
56 1vg8_A RAS-related protein RAB 41.6 43 0.0015 19.6 4.1 29 36-64 149-177 (207)
57 3tkl_A RAS-related protein RAB 40.7 33 0.0011 19.9 3.5 28 37-64 154-181 (196)
58 2nzj_A GTP-binding protein REM 40.3 35 0.0012 19.2 3.5 28 37-64 144-171 (175)
59 3dz8_A RAS-related protein RAB 40.3 36 0.0012 19.9 3.6 27 37-63 161-187 (191)
60 2o52_A RAS-related protein RAB 39.6 43 0.0015 19.9 3.9 28 36-63 162-189 (200)
61 1mh1_A RAC1; GTP-binding, GTPa 39.5 19 0.00065 20.6 2.2 28 37-64 155-182 (186)
62 1fzq_A ADP-ribosylation factor 38.8 25 0.00086 20.5 2.7 29 34-62 150-178 (181)
63 2cxx_A Probable GTP-binding pr 37.4 41 0.0014 19.3 3.5 26 38-63 160-185 (190)
64 3q85_A GTP-binding protein REM 37.3 45 0.0015 18.7 3.6 26 37-62 142-167 (169)
65 2f7s_A C25KG, RAS-related prot 37.2 41 0.0014 20.0 3.5 27 37-63 174-200 (217)
66 2ce2_X GTPase HRAS; signaling 37.1 38 0.0013 18.7 3.2 26 37-62 140-165 (166)
67 2b6h_A ADP-ribosylation factor 36.4 35 0.0012 20.1 3.1 27 35-61 164-190 (192)
68 3oes_A GTPase rhebl1; small GT 36.3 30 0.001 20.5 2.8 29 37-65 162-190 (201)
69 2f9l_A RAB11B, member RAS onco 36.2 54 0.0018 19.3 3.9 26 38-63 144-169 (199)
70 4dsu_A GTPase KRAS, isoform 2B 35.8 50 0.0017 18.8 3.7 28 37-64 141-168 (189)
71 2yc2_C IFT27, small RAB-relate 34.1 33 0.0011 20.0 2.7 30 36-65 165-195 (208)
72 2oc3_A Tyrosine-protein phosph 34.0 1E+02 0.0035 20.4 5.9 56 4-61 199-254 (303)
73 3bwd_D RAC-like GTP-binding pr 33.6 29 0.001 19.8 2.4 26 37-62 156-181 (182)
74 3ihw_A Centg3; RAS, centaurin, 33.5 56 0.0019 19.1 3.7 29 36-64 154-182 (184)
75 2atx_A Small GTP binding prote 33.5 48 0.0016 19.2 3.4 26 37-62 168-193 (194)
76 1c1y_A RAS-related protein RAP 33.4 44 0.0015 18.6 3.1 26 36-61 141-166 (167)
77 1m7b_A RND3/RHOE small GTP-bin 33.3 33 0.0011 19.9 2.6 26 37-62 157-183 (184)
78 3cpj_B GTP-binding protein YPT 33.1 37 0.0012 20.5 2.8 27 36-62 150-176 (223)
79 3pqc_A Probable GTP-binding pr 31.7 50 0.0017 18.9 3.2 26 36-61 168-193 (195)
80 1zbd_A Rabphilin-3A; G protein 31.4 42 0.0014 19.7 2.9 27 37-63 146-172 (203)
81 2h17_A ADP-ribosylation factor 31.2 60 0.002 18.7 3.5 24 35-58 156-179 (181)
82 1oix_A RAS-related protein RAB 31.1 58 0.002 19.2 3.5 23 38-60 168-190 (191)
83 3t5g_A GTP-binding protein RHE 31.0 38 0.0013 19.4 2.5 28 37-64 144-171 (181)
84 2qu8_A Putative nucleolar GTP- 30.3 86 0.0029 18.9 4.3 29 36-64 179-207 (228)
85 1kao_A RAP2A; GTP-binding prot 30.0 46 0.0016 18.4 2.7 25 37-61 141-165 (167)
86 1gwn_A RHO-related GTP-binding 28.4 47 0.0016 20.0 2.8 26 37-62 178-204 (205)
87 2y8e_A RAB-protein 6, GH09086P 28.3 26 0.0009 19.8 1.5 26 36-61 151-176 (179)
88 3o47_A ADP-ribosylation factor 27.5 64 0.0022 21.3 3.5 29 34-62 299-327 (329)
89 2p5s_A RAS and EF-hand domain 27.3 47 0.0016 19.5 2.6 26 37-62 172-197 (199)
90 1z0j_A RAB-22, RAS-related pro 27.3 30 0.001 19.4 1.6 26 36-61 143-168 (170)
91 3cph_A RAS-related protein SEC 26.9 56 0.0019 19.1 2.9 27 37-63 157-183 (213)
92 3gj0_A GTP-binding nuclear pro 26.6 50 0.0017 19.8 2.7 29 36-64 149-177 (221)
93 1ek0_A Protein (GTP-binding pr 26.4 21 0.0007 20.0 0.8 25 36-60 143-167 (170)
94 2ew1_A RAS-related protein RAB 26.3 79 0.0027 18.9 3.5 27 37-63 164-190 (201)
95 2cjw_A GTP-binding protein GEM 25.5 88 0.003 18.4 3.6 25 38-62 148-172 (192)
96 2g3y_A GTP-binding protein GEM 25.2 83 0.0028 19.3 3.5 26 38-63 179-204 (211)
97 3cbq_A GTP-binding protein REM 25.2 77 0.0026 18.7 3.3 27 37-63 163-189 (195)
98 2wkq_A NPH1-1, RAS-related C3 25.1 66 0.0022 20.4 3.1 27 37-63 305-331 (332)
99 1pui_A ENGB, probable GTP-bind 24.9 1.1E+02 0.0038 17.9 4.4 26 35-60 172-197 (210)
100 2gf0_A GTP-binding protein DI- 24.8 31 0.001 20.1 1.4 28 37-64 146-173 (199)
101 2h57_A ADP-ribosylation factor 24.8 1.1E+02 0.0036 17.6 4.5 27 34-60 159-185 (190)
102 4dcu_A GTP-binding protein ENG 24.8 1.1E+02 0.0037 21.1 4.3 45 14-63 326-370 (456)
103 2erx_A GTP-binding protein DI- 24.2 24 0.00082 19.8 0.8 25 37-61 142-166 (172)
104 2efe_B Small GTP-binding prote 23.8 40 0.0014 19.2 1.7 27 36-62 149-175 (181)
105 1vr7_A Adometdc, samdc, S-aden 23.7 50 0.0017 20.0 2.2 15 13-27 100-114 (142)
106 1svi_A GTP-binding protein YSX 23.6 1.1E+02 0.0037 17.5 3.7 26 35-60 168-193 (195)
107 1yfo_A D1, receptor protein ty 23.1 1.7E+02 0.0057 19.3 6.4 52 4-57 198-249 (302)
108 2wji_A Ferrous iron transport 22.9 75 0.0026 18.0 2.8 24 37-60 140-163 (165)
109 1r2q_A RAS-related protein RAB 22.0 66 0.0022 17.8 2.4 25 36-60 143-167 (170)
110 2fg5_A RAB-22B, RAS-related pr 21.9 49 0.0017 19.3 1.9 27 36-62 160-186 (192)
111 1zj6_A ADP-ribosylation factor 21.7 1.2E+02 0.0042 17.3 5.3 28 34-61 150-177 (187)
112 1zd9_A ADP-ribosylation factor 21.6 57 0.0019 19.0 2.1 27 35-61 158-184 (188)
113 1zoy_C Large cytochrome bindin 20.9 27 0.00093 20.9 0.6 20 24-43 11-30 (140)
114 2h88_C Succinate dehydrogenase 20.4 29 0.00099 20.8 0.6 20 24-43 11-30 (140)
115 4gzl_A RAS-related C3 botulinu 20.3 46 0.0016 19.8 1.6 23 38-60 181-203 (204)
116 4b0f_A C4B-binding protein alp 20.1 25 0.00087 18.9 0.3 18 1-22 24-41 (65)
117 3s4o_A Protein tyrosine phosph 20.1 1.3E+02 0.0045 17.0 4.9 36 14-49 87-125 (167)
118 3zqu_A Probable aromatic acid 20.1 1.1E+02 0.0039 19.4 3.4 24 5-28 166-189 (209)
119 1mky_A Probable GTP-binding pr 20.1 2.2E+02 0.0074 19.4 5.7 26 38-63 331-356 (439)
120 4dkw_A Large terminase protein 20.0 1.3E+02 0.0045 18.9 3.7 27 10-42 121-147 (211)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.80 E-value=8.8e-20 Score=126.96 Aligned_cols=69 Identities=43% Similarity=0.692 Sum_probs=61.1
Q ss_pred cccCCCCCCC-CChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616 2 KYFTELLSGA-QEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY 71 (71)
Q Consensus 2 ~~Fp~~y~G~-~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~ 71 (71)
+|||+ |+|+ +++++|.+||+++|.++++.+.+.+|+|+|||+||+||+.||.+|.++|++.||+++||+
T Consensus 258 ~~fp~-y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~~~l~ 327 (327)
T 3ohm_A 258 DYFPE-YDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327 (327)
T ss_dssp GTCTT-CCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred hhchh-ccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 59999 9996 799999999999999998777899999999999999999999999999999999999974
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=1.6e-19 Score=126.34 Aligned_cols=68 Identities=37% Similarity=0.483 Sum_probs=61.0
Q ss_pred cccCCCCCCCCChHHHHHHHHHHH------HhhccCCC-----------CCeeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 2 KYFTELLSGAQEYGEAAAYIQAQF------EAKNKSTT-----------KEIYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 2 ~~Fp~~y~G~~~~~~~~~fi~~kF------~~~~~~~~-----------r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+|||+ |+|++++++|.+||+++| .++++.+. |.+|+|+|||+||+||+.||++|+++|++ |
T Consensus 252 ~~fp~-y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~-~ 329 (340)
T 4fid_A 252 TIFPE-YTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK-N 329 (340)
T ss_dssp GTCTT-CCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH-H
T ss_pred Hhhhh-hcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH-H
Confidence 68999 999989999999999999 77766544 78999999999999999999999999999 9
Q ss_pred hhhcCCC
Q psy6616 65 LRGCGLY 71 (71)
Q Consensus 65 l~~~~l~ 71 (71)
|++.||+
T Consensus 330 l~~~~~~ 336 (340)
T 4fid_A 330 MAANGKM 336 (340)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 9999874
No 3
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.58 E-value=3.3e-15 Score=104.74 Aligned_cols=68 Identities=29% Similarity=0.579 Sum_probs=58.2
Q ss_pred cccCCCCCCC-CChHHHHHHHHHHHHhhccCC-CCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616 2 KYFTELLSGA-QEYGEAAAYIQAQFEAKNKST-TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY 71 (71)
Q Consensus 2 ~~Fp~~y~G~-~~~~~~~~fi~~kF~~~~~~~-~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~ 71 (71)
+|||+ |+|+ .+++++.+|++++|.++++.+ .+.+|+|+|||+|++||+.+|+.|.++|++.||++ ||+
T Consensus 292 ~~fp~-y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~~-~l~ 361 (362)
T 1zcb_A 292 DYFLE-FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQ-LML 361 (362)
T ss_dssp GTCTT-CCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hcCcc-ccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHHh-hcc
Confidence 58999 9997 899999999999999987643 67899999999999999999999999999999999 874
No 4
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.57 E-value=1.4e-15 Score=108.22 Aligned_cols=69 Identities=32% Similarity=0.504 Sum_probs=59.1
Q ss_pred cccCCCCCC------------C-CChHHHHHHHHHHHHhhccC---CCCCeeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 2 KYFTELLSG------------A-QEYGEAAAYIQAQFEAKNKS---TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 2 ~~Fp~~y~G------------~-~~~~~~~~fi~~kF~~~~~~---~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
+|||+ |+| + +++++|.+||+++|.++++. ..+.+|+|+|||+|++||+.||.+|.++|++.||
T Consensus 310 ~~fp~-y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 310 DYFPE-FARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp GTCGG-GGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 68999 974 2 24788999999999987642 2468999999999999999999999999999999
Q ss_pred hhcCCC
Q psy6616 66 RGCGLY 71 (71)
Q Consensus 66 ~~~~l~ 71 (71)
+.+||+
T Consensus 389 ~~~~~~ 394 (402)
T 1azs_C 389 RQYELL 394 (402)
T ss_dssp HHHHC-
T ss_pred HHhcCc
Confidence 998875
No 5
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.54 E-value=1.3e-14 Score=101.36 Aligned_cols=69 Identities=67% Similarity=1.054 Sum_probs=58.0
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHhhccC-CCCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616 2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY 71 (71)
Q Consensus 2 ~~Fp~~y~G~~~~~~~~~fi~~kF~~~~~~-~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~ 71 (71)
+|||+ |+|+.+.+++.+|++.+|.++++. ..+.+|.|.|||+|++||+.+|+.|.+.|++.||+++||+
T Consensus 284 ~~fp~-~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~l~ 353 (353)
T 1cip_A 284 ICYPE-YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353 (353)
T ss_dssp GTCTT-CCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred hcccc-cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 58999 999999999999999999998764 3688999999999999999999999999999999999985
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.50 E-value=1.7e-14 Score=100.91 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=57.7
Q ss_pred cccCCCCC----CCCChHHHHHHHHHHHHhh---ccCC---CCCeeEeecccccCccHHHHHHHHHHHHHHhhhhhcCCC
Q psy6616 2 KYFTELLS----GAQEYGEAAAYIQAQFEAK---NKST---TKEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGCGLY 71 (71)
Q Consensus 2 ~~Fp~~y~----G~~~~~~~~~fi~~kF~~~---~~~~---~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~~~l~ 71 (71)
+|||+ |. |++++++|.+|++++|.++ +..+ .+.+|+|.|||+|++||+.+|+.|.+.|++.||+++||+
T Consensus 276 ~~fp~-y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 276 EWFRD-YQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp GGGTT-CCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccccc-cccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence 36999 86 5678999999999999887 3222 467899999999999999999999999999999999985
No 7
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.15 E-value=0.46 Score=28.25 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=29.6
Q ss_pred cccCCCCCCC-----CChHHHHHHHHHHHHhhccCCCCCeeEeeccc-------ccCccHHHHHHH
Q psy6616 2 KYFTELLSGA-----QEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCA-------TDTNNIQFVFDA 55 (71)
Q Consensus 2 ~~Fp~~y~G~-----~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~A-------tDt~ni~~vf~~ 55 (71)
++|||||.|. .-|.....+|.++|..- +. .|.-+|.| -|...|..|++-
T Consensus 33 ~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~n---p~--~yLT~t~~rr~L~~~gDv~~i~RVh~F 93 (111)
T 2dce_A 33 QAIPEFFEGRQAKTPERYLKIRNYILDQWEIC---KP--KYLNKTSVRPGLKNCGDVNCIGRIHTY 93 (111)
T ss_dssp TTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHH---TT--SCCCGGGTTTTTSSSSCHHHHHHHHHH
T ss_pred HhChHHhcCCcccCHHHHHHHHHHHHHHHHhC---Cc--ceeeHHHHHHhcccccCHHHHHHHHHH
Confidence 5799966763 23666677888888752 22 24444544 466666666554
No 8
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=80.92 E-value=0.26 Score=29.16 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=17.4
Q ss_pred cccCCCCCCC--C----ChHHHHHHHHHHHHh
Q psy6616 2 KYFTELLSGA--Q----EYGEAAAYIQAQFEA 27 (71)
Q Consensus 2 ~~Fp~~y~G~--~----~~~~~~~fi~~kF~~ 27 (71)
++|||||+|. . .|.....+|.++|..
T Consensus 31 ~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~ 62 (104)
T 2fq3_A 31 QSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRL 62 (104)
T ss_dssp HHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHChHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4799977763 1 255666788888864
No 9
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=72.42 E-value=4.8 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.7
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
+-+..++|.+.++|+.+|+.+.+.+++.+.
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 446789999999999999999999987654
No 10
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=68.52 E-value=4.9 Score=23.25 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=23.8
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~ 66 (71)
+....++|.+.+++..+|+.+.+.+.+.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHC----
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999999999988766543
No 11
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=67.17 E-value=4.4 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.0
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~ 66 (71)
+-.+.++|.+.++|..+|+.+.+.+++..++
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 177 (178)
T 2hxs_A 147 FSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177 (178)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHTTCCCC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 3467899999999999999999988776553
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=64.47 E-value=12 Score=21.86 Aligned_cols=31 Identities=6% Similarity=0.011 Sum_probs=25.5
Q ss_pred CeeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
.+.+..++|.+.+++..+|+.+.+.+.+..+
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (189)
T 2x77_A 157 TWTIVKSSSKTGDGLVEGMDWLVERLREQGL 187 (189)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHTC-
T ss_pred ceEEEEccCCCccCHHHHHHHHHHHHHhccc
Confidence 4567889999999999999999988876543
No 13
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=62.01 E-value=20 Score=20.58 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.6
Q ss_pred CeeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
.+-+..++|.+.+++..+|+.+.+.+.++
T Consensus 153 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 153 SWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp CEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 44577899999999999999999888754
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=61.05 E-value=16 Score=21.39 Aligned_cols=31 Identities=3% Similarity=0.015 Sum_probs=26.3
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
..+-+..++|.+-++|..+|+.+.+.+.+..
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 4556789999999999999999999887654
No 15
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=59.95 E-value=14 Score=21.67 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.7
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-+..++|.+.+++..+|..+.+.+++..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 44678999999999999999999887653
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=57.56 E-value=14 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=22.8
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~ 66 (71)
+-+..|+|.+.++|..+|..+.+.+.+..-+
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3467899999999999999999988865443
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=56.98 E-value=9.4 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=22.4
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+-.+.++|.+.++|..+|+.+.+.+++
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 152 LLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 456889999999999999998877654
No 18
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=56.90 E-value=8.4 Score=23.00 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCCeeEeecccccCccHHHHHHHHHHHH
Q psy6616 33 TKEIYCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 33 ~r~iy~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
...+....|+|.+ ++|..+|..+.+.|
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 3456678999999 99999999887654
No 19
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=56.45 E-value=19 Score=20.39 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=24.1
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+.+-+..++|.+.+++..+|+.+.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 141 RKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 34567789999999999999999887764
No 20
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=56.13 E-value=15 Score=21.13 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=25.3
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
+-+..++|.+.++|..+|..+.+.+.+...
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 155 VNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 346789999999999999999998886554
No 21
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=55.89 E-value=15 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.9
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
-+..++|.+.+++..+|+.+.+.+++..-
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999886543
No 22
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=55.78 E-value=15 Score=21.57 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.7
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-+..++|.+.++|..+|..+.+.+++..
T Consensus 158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 158 LIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999888654
No 23
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=55.78 E-value=14 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.2
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
-...++|.+.++|..+|+.+.+.+++...
T Consensus 184 ~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 184 AYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999987654
No 24
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=54.84 E-value=20 Score=20.46 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=27.0
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~ 67 (71)
+-+..++|.+.+++..+|+.+.+.+....++.
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~ 176 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEMEELKA 176 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHHTTTTS
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhhhcccc
Confidence 56778999999999999999998887766643
No 25
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=54.42 E-value=29 Score=20.04 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=25.1
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+.+.+..++|.+.+++..+|+.+.+.+.+.
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 152 HHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 345678999999999999999998887654
No 26
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=53.58 E-value=11 Score=22.84 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 15 GEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 15 ~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
|.-.+||++.|..+.....|.+-+-+.+-.-- ..++..+++.||.
T Consensus 15 E~l~n~fRk~fkD~R~~GskKvviNvis~~~y---~e~v~~~REAiLD 59 (126)
T 2rbg_A 15 DNFENYFRKIFLDVRSSGSKKTTINVFTEIQY---QELVTLIREALLE 59 (126)
T ss_dssp GGHHHHHHHHHHHHHHHTCSEEEEEEECSSCH---HHHHHHTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCceEEEEEecCCcH---HHHHHHHHHHHHh
Confidence 45678999999999878889888888776643 3478888888884
No 27
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=53.18 E-value=20 Score=20.37 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=25.8
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLRG 67 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl~~ 67 (71)
-+..++|.+.+++..+|+.+.+.+++..-+.
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 146 QLFETSAKENVNVEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 3568999999999999999999988765443
No 28
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=53.01 E-value=30 Score=19.83 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.9
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+-+..++|.+.+++..+|+.+.+.+.+.
T Consensus 178 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 178 LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3467899999999999999999888754
No 29
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.44 E-value=17 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.6
Q ss_pred eeEeecccccCc-cHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTN-NIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~-ni~~vf~~V~d~Il~~n 64 (71)
+-...++|.+.+ +|..+|+.+.+.+++.+
T Consensus 164 ~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 164 CAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 346689999999 99999999999888754
No 30
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=50.81 E-value=20 Score=20.69 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=24.5
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-...++|.+.+++..+|..+.+.+++..
T Consensus 167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 167 PVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999888654
No 31
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=48.99 E-value=20 Score=20.14 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=21.9
Q ss_pred CeeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
.+.+..++|.+.++|..+|+.+.+.+.+
T Consensus 135 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 135 NWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 4456789999999999999998876643
No 32
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase, phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Probab=48.03 E-value=40 Score=21.61 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=31.2
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHH
Q psy6616 4 FTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAV 56 (71)
Q Consensus 4 Fp~~y~G~~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V 56 (71)
+|| .+-|.+.++..+|++..-.........++-+|.-...-...+=.+++.+
T Consensus 148 Wpd-~gvP~~~~~~l~~i~~v~~~~~~~~~~pivVHCsaGvGRTGtfia~~~~ 199 (253)
T 1p15_A 148 WPE-VGIPSDGKGMINIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTV 199 (253)
T ss_dssp SCS-SSCCSSSCSHHHHHHHHHHHTTTTTSCCEEEESSSSSHHHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHHHHHhhhccCCCCEEEEcCCCCchhHHHHHHHHH
Confidence 678 7667665666777765543322344678999977666544443333333
No 33
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=47.93 E-value=22 Score=20.65 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=24.3
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNLR 66 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl~ 66 (71)
-+..++|.+.+++..+|+.+.+.+.+...+
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 187 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREIRQYRMK 187 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999988765544
No 34
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=47.88 E-value=34 Score=19.52 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=24.8
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
+-...|+|.+.+++..+|+.+.+.+++..-
T Consensus 143 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 143 CSYYETXATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999998876543
No 35
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=47.60 E-value=25 Score=19.70 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=23.2
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.+++..+|..+.+.+.+.
T Consensus 140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 140 PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999999888753
No 36
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=47.09 E-value=25 Score=20.58 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=24.8
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
-+..++|.+.++|..+|..+.+.+.....
T Consensus 152 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 152 NYVETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 46789999999999999999999886543
No 37
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=47.06 E-value=17 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=24.8
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
-+..++|.+.++|..+|+.+.+.+++...
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999886654
No 38
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=47.04 E-value=22 Score=20.89 Aligned_cols=29 Identities=24% Similarity=0.095 Sum_probs=24.6
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
-...++|.+.++|..+|+.+.+.++..+-
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 45789999999999999999998886543
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=46.99 E-value=25 Score=19.99 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.5
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+-+..++|.+.+++..+|+.+.+.+++.
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3467899999999999999998888753
No 40
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=46.98 E-value=31 Score=20.33 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.1
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+-...++|.+.++|..+|..+.+.|++
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999888765
No 41
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=46.34 E-value=21 Score=20.14 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=22.6
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+-...++|.+.+++..+|+.+.+.+++
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 143 AKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 445789999999999999999887753
No 42
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=45.76 E-value=26 Score=20.91 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=24.2
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
.+..|+|.+.++|..+|..+.+.+++..
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 5678999999999999999998887643
No 43
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=45.49 E-value=27 Score=20.38 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.3
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.+++..+|+.+.+.+.+.
T Consensus 160 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 160 EFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999888653
No 44
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=45.44 E-value=16 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.4
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-...++|.+.+++..+|+.+.+.+++
T Consensus 142 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 142 RFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999887764
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=45.33 E-value=28 Score=19.70 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.4
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-+..++|.+.+++..+|+.+.+.+.+..
T Consensus 146 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 146 VAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 44678999999999999999998887543
No 46
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=45.27 E-value=24 Score=19.63 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=22.7
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+-+..++|.+.+++..+|+.+.+.+.+
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 141 VNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999887764
No 47
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=45.21 E-value=26 Score=20.14 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.5
Q ss_pred Eeecccc-cCccHHHHHHHHHHHHHH
Q psy6616 38 CHMTCAT-DTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 38 ~h~T~At-Dt~ni~~vf~~V~d~Il~ 62 (71)
...++|. +.+++..+|+.+.+.|.+
T Consensus 157 ~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 157 YIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 5689999 778999999999988765
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=43.71 E-value=36 Score=19.50 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=24.0
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+-...++|.+.+++..+|+.+.+.+++.
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 4567899999999999999999888754
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=43.55 E-value=29 Score=20.08 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.1
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+.+..++|.+.++|..+|+.+.+.+.+.
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 4467899999999999999999988753
No 50
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=43.54 E-value=23 Score=21.12 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.6
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-...++|.+.++|..+|+.+.+.+++..
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 155 AYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred eEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 3568999999999999999999988543
No 51
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=43.47 E-value=23 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.4
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-...++|.+.++|..+|+.+.+.+++
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 45689999999999999999888764
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=42.98 E-value=34 Score=19.15 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.8
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-...++|.+.+++..+|+.+.+.+.+.
T Consensus 139 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 139 KFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred cEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 356899999999999999998887653
No 53
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=42.04 E-value=31 Score=20.39 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.4
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.++|..+|..+.+.+.+.
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999988753
No 54
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=41.77 E-value=23 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=21.7
Q ss_pred eEeeccc-ccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCA-TDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~A-tDt~ni~~vf~~V~d~Il~ 62 (71)
-...++| .+.++|..+|+.+.+.+.+
T Consensus 160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 160 LFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred cEEEEeecCccccHHHHHHHHHHHHhh
Confidence 4568999 8999999999998887754
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=41.66 E-value=24 Score=20.65 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=24.1
Q ss_pred EeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
...++|.+.++|..+|+.+.+.+++...
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999998886543
No 56
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=41.58 E-value=43 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.5
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-+..++|.+.++|..+|+.+.+.+++..
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999887644
No 57
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=40.75 E-value=33 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=24.1
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-+..++|.+.+++..+|+.+.+.+.+..
T Consensus 154 ~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 154 PFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999887654
No 58
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=40.27 E-value=35 Score=19.21 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=23.4
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-...++|.+-++|..+|+.+.+.+....
T Consensus 144 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 144 KFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 3568999999999999999988886543
No 59
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=40.26 E-value=36 Score=19.89 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=23.4
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+-++|..+|+.+.+.+++.
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 161 DFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999888754
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=39.64 E-value=43 Score=19.86 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.0
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+-...++|.+.++|..+|..+.+.++..
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4467899999999999999999988754
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=39.53 E-value=19 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=23.7
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-+..++|.+.+++..+|+.+.+.++...
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred EEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 4678999999999999999988886543
No 62
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=38.85 E-value=25 Score=20.54 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=22.4
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+.+-+..|+|.+.++|..+|+.+.+.+.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 150 RVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 34556789999999999999988776643
No 63
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=37.35 E-value=41 Score=19.27 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=22.5
Q ss_pred EeecccccCccHHHHHHHHHHHHHHh
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+..++|...+++..+|+.+.+.+.+.
T Consensus 160 ~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 160 FIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHhcchh
Confidence 57899999999999999998887654
No 64
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=37.34 E-value=45 Score=18.66 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=22.3
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-...++|..-+++..+|+.+.+.+..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 142 KHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEecCccCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999887765
No 65
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=37.24 E-value=41 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=23.4
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.++|..+|+.+.+.+++.
T Consensus 174 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 174 PYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 367899999999999999999988753
No 66
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=37.06 E-value=38 Score=18.66 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=21.8
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-+..++|.+.+++..+|+.+.+.+.+
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 140 PYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999998887653
No 67
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=36.36 E-value=35 Score=20.15 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.2
Q ss_pred CeeEeecccccCccHHHHHHHHHHHHH
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
.+.+..++|.+-++|..+|+.+.+.+.
T Consensus 164 ~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 164 TWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 455678999999999999998877654
No 68
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=36.26 E-value=30 Score=20.49 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=23.7
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~nl 65 (71)
-...++|.+.+++..+|..+.+.+.+..-
T Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 162 TFMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 35689999999999999999998876543
No 69
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=36.19 E-value=54 Score=19.32 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.2
Q ss_pred EeecccccCccHHHHHHHHHHHHHHh
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
..-|+|.|.++++.+|+.+.+.+.+.
T Consensus 144 ~~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 144 FIETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 34499999999999999999988753
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=35.77 E-value=50 Score=18.80 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=23.7
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-+..++|.+.+++..+|+.+.+.+.+..
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 141 PFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 3568999999999999999999887543
No 71
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=34.13 E-value=33 Score=20.03 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=19.0
Q ss_pred eeEeeccccc-CccHHHHHHHHHHHHHHhhh
Q psy6616 36 IYCHMTCATD-TNNIQFVFDAVTDVIIANNL 65 (71)
Q Consensus 36 iy~h~T~AtD-t~ni~~vf~~V~d~Il~~nl 65 (71)
+-+..++|.+ .+++..+|+.+.+.+++...
T Consensus 165 ~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp CEEEECCC-------CHHHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 4567899999 99999999999998875543
No 72
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine phosphatase, human, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=34.01 E-value=1e+02 Score=20.36 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=33.2
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHH
Q psy6616 4 FTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 4 Fp~~y~G~~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
+|| .+-|.+.+...+|++..=. .......++-+|.-...-...+=.+++.+.++++
T Consensus 199 WpD-~gvP~~~~~~l~~i~~v~~-~~~~~~~PivVHCsaGvGRTGtfiaid~~~~~ll 254 (303)
T 2oc3_A 199 WPD-RGVPSSPDHMLAMVEEARR-LQGSGPEPLCVHCSAGCGRTGVLCTVDYVRQLLL 254 (303)
T ss_dssp CCS-SSCCSCSHHHHHHHHHHHH-HHCSSCCCEEEECSSSSHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHHHHH-HhcCCCCcEEEEECCCCcceeEEEeHHHHHHHHH
Confidence 677 7667667777787765422 2223457899997766654444444444444444
No 73
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=33.62 E-value=29 Score=19.77 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.6
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-...++|.+.++|..+|+.+.+.++.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34689999999999999998887653
No 74
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=33.48 E-value=56 Score=19.10 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=23.9
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-...++|.+-++|..+|..+.+.+++..
T Consensus 154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 154 CTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp CEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 33467999999999999999998887653
No 75
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=33.47 E-value=48 Score=19.25 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.1
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-...++|.+-++|..+|+.+.+.++.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 35689999999999999999887763
No 76
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=33.35 E-value=44 Score=18.56 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=21.4
Q ss_pred eeEeecccccCccHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
+-+..++|.+.+++..+|+.+.+.+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 141 CAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 44678999999999999998877663
No 77
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=33.28 E-value=33 Score=19.93 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.1
Q ss_pred eEeecccc-cCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCAT-DTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~At-Dt~ni~~vf~~V~d~Il~ 62 (71)
-...++|. +.++|..+|+.+.+.+++
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 35679996 678999999999888875
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=33.12 E-value=37 Score=20.55 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=22.2
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+-+..++|.+.++|..+|+.+.+.+++
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 446689999999999999999888874
No 79
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=31.71 E-value=50 Score=18.93 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.8
Q ss_pred eeEeecccccCccHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
+-+..++|.+-++|..+|+.+.+.+.
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhh
Confidence 34678999999999999999887764
No 80
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=31.42 E-value=42 Score=19.66 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.3
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.+++..+|+.+.+.+.+.
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 146 EFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999988753
No 81
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=31.17 E-value=60 Score=18.68 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=19.4
Q ss_pred CeeEeecccccCccHHHHHHHHHH
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTD 58 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d 58 (71)
.+.+..++|.+.+++..+|+.+.+
T Consensus 156 ~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 156 QWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHT
T ss_pred ceEEEEccCCCCcCHHHHHHHHHh
Confidence 446778999999999998887654
No 82
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=31.12 E-value=58 Score=19.17 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.3
Q ss_pred EeecccccCccHHHHHHHHHHHH
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
..-|+|.|.++++.+|+.+.+.|
T Consensus 168 ~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 168 FIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 34499999999999999887765
No 83
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=30.99 E-value=38 Score=19.38 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=23.2
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-...++|.+-+++..+|..+.+.+.+.+
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 144 AFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 3567999999999999999998887654
No 84
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=30.25 E-value=86 Score=18.92 Aligned_cols=29 Identities=3% Similarity=-0.032 Sum_probs=24.6
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-+..++|.+-++|..+|+.+.+.+.+..
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999887543
No 85
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=29.97 E-value=46 Score=18.38 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=20.8
Q ss_pred eEeecccccCccHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
-+..++|.+.+++..+|+.+.+.+.
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 3568899999999999998887764
No 86
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=28.38 E-value=47 Score=19.97 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=21.2
Q ss_pred eEeecccc-cCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCAT-DTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~At-Dt~ni~~vf~~V~d~Il~ 62 (71)
-...++|. +.++|+.+|..+.+.+++
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 35679997 568999999999988875
No 87
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=28.28 E-value=26 Score=19.80 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.9
Q ss_pred eeEeecccccCccHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
+-+..++|.+.++++.+|+.+.+.+.
T Consensus 151 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 151 VMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999998876543
No 88
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=27.45 E-value=64 Score=21.30 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+.+.+..++|.+-++|..+|+.+.+.|.+
T Consensus 299 ~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 299 RNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 45567889999999999999999887754
No 89
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=27.31 E-value=47 Score=19.52 Aligned_cols=26 Identities=19% Similarity=0.055 Sum_probs=21.5
Q ss_pred eEeecccccCccHHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
-...++|.+.++|..+|..+.+.+.+
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999988877653
No 90
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=27.26 E-value=30 Score=19.36 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=21.0
Q ss_pred eeEeecccccCccHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
+-+..++|.+.+++..+|..+.+.+.
T Consensus 143 ~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 34678999999999999998877653
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.86 E-value=56 Score=19.14 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=23.0
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.++|..+|..+.+.+.+.
T Consensus 157 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 157 PFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp CEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999998887653
No 92
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=26.65 E-value=50 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=24.5
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
+-+..++|.+.++|..+|..+.+.++...
T Consensus 149 ~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 149 LQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp CEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 44678999999999999999999887643
No 93
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.40 E-value=21 Score=20.04 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.1
Q ss_pred eeEeecccccCccHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
+-+..++|.+.+++..+|+.+.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 143 LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467899999999999998876544
No 94
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.28 E-value=79 Score=18.91 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.2
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
....++|.+.++|..+|..+.+.+++.
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 164 YYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999998888754
No 95
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=25.51 E-value=88 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.4
Q ss_pred EeecccccCccHHHHHHHHHHHHHH
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
...|+|...+||..+|..+...+..
T Consensus 148 ~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 148 FIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEeccccCCCHHHHHHHHHHHHHh
Confidence 4579999999999999998887754
No 96
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=25.25 E-value=83 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.1
Q ss_pred EeecccccCccHHHHHHHHHHHHHHh
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
...|+|..-++|..+|..+...|...
T Consensus 179 ~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 179 FIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 56799999999999999998877543
No 97
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=25.21 E-value=77 Score=18.71 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=22.7
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-...++|.+.+++..+|..+.+.+.+.
T Consensus 163 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 163 KHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 356899999999999999998887654
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=25.14 E-value=66 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=22.7
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
-+..++|.+.++|..+|..+.+.++..
T Consensus 305 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 305 KYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 456899999999999999999888753
No 99
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=24.88 E-value=1.1e+02 Score=17.85 Aligned_cols=26 Identities=0% Similarity=0.045 Sum_probs=21.8
Q ss_pred CeeEeecccccCccHHHHHHHHHHHH
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
.+-...|+|.|.++++.+++.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHH
Confidence 45567899999999999999887764
No 100
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=24.84 E-value=31 Score=20.07 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=23.0
Q ss_pred eEeecccccCccHHHHHHHHHHHHHHhh
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVIIANN 64 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il~~n 64 (71)
-+..++|.+.+++..+|+.+.+.+...+
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 146 AFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 4568999999999999999988776543
No 101
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=24.77 E-value=1.1e+02 Score=17.64 Aligned_cols=27 Identities=22% Similarity=0.063 Sum_probs=22.2
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHH
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
+.+-+..++|.+.++|..+|+.+.+.+
T Consensus 159 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 159 KPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 345677899999999999999887765
No 102
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=24.75 E-value=1.1e+02 Score=21.13 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHHHHHHHh
Q psy6616 14 YGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 14 ~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
.+++.+++++.+.... .+-+.+++|...++|..+|+.+.+.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 326 MKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp HHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 4566677776665432 12367999999999999999998877543
No 103
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=24.20 E-value=24 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.5
Q ss_pred eEeecccccCccHHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
-+..++|.+.++++.+|+.+.+.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 142 AFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred eEEEecCCCCcCHHHHHHHHHHHHh
Confidence 4568999999999999998877554
No 104
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=23.77 E-value=40 Score=19.15 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=21.5
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+.+..++|.+.+++..+|..+.+.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 LFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999988776543
No 105
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=23.73 E-value=50 Score=20.02 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHHh
Q psy6616 13 EYGEAAAYIQAQFEA 27 (71)
Q Consensus 13 ~~~~~~~fi~~kF~~ 27 (71)
+.+.|.+||++.|..
T Consensus 100 ~P~~a~~~L~~~f~a 114 (142)
T 1vr7_A 100 DPWKAFEHLKKALKA 114 (142)
T ss_dssp CHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhCC
Confidence 788999999999964
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=23.62 E-value=1.1e+02 Score=17.53 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=21.3
Q ss_pred CeeEeecccccCccHHHHHHHHHHHH
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
.+-+..++|.+.+++..+|+.+.+.+
T Consensus 168 ~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 168 EDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCHHHHHHHHHHHh
Confidence 34567899999999999999887665
No 107
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal transduction, glycoprotein, phosphorylation, signal; 2.25A {Mus musculus} SCOP: c.45.1.2
Probab=23.11 E-value=1.7e+02 Score=19.28 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=31.5
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhccCCCCCeeEeecccccCccHHHHHHHHH
Q psy6616 4 FTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVT 57 (71)
Q Consensus 4 Fp~~y~G~~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~AtDt~ni~~vf~~V~ 57 (71)
||| .+-|.+.....+|++.- ...+.....++-+|.-...-...+=.+++.+.
T Consensus 198 WpD-~gvP~~~~~~l~~i~~v-~~~~~~~~~PivVHCsaGvGRTGtfiaid~~l 249 (302)
T 1yfo_A 198 WPD-FGVPFTPIGMLKFLKKV-KACNPQYAGAIVVHCSAGVGRTGTFVVIDAML 249 (302)
T ss_dssp CCS-SSCCSCSHHHHHHHHHH-HHHSCTTSCCEEEECSSSSHHHHHHHHHHHHH
T ss_pred cCC-CCcCCCHHHHHHHHHHH-HHhccCCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 677 76676666777777653 23333446789999876665444433333333
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=22.87 E-value=75 Score=18.01 Aligned_cols=24 Identities=13% Similarity=0.020 Sum_probs=19.6
Q ss_pred eEeecccccCccHHHHHHHHHHHH
Q psy6616 37 YCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 37 y~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
-...|+|...+++..+|..+.+.+
T Consensus 140 ~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356899999999999999876643
No 109
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=21.97 E-value=66 Score=17.80 Aligned_cols=25 Identities=20% Similarity=0.289 Sum_probs=19.9
Q ss_pred eeEeecccccCccHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
+-...++|.+.+++..+|+.+.+.+
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3456899999999999998876543
No 110
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=21.93 E-value=49 Score=19.31 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=21.6
Q ss_pred eeEeecccccCccHHHHHHHHHHHHHH
Q psy6616 36 IYCHMTCATDTNNIQFVFDAVTDVIIA 62 (71)
Q Consensus 36 iy~h~T~AtDt~ni~~vf~~V~d~Il~ 62 (71)
+-+..++|.+.++|..+|+.+.+.+.+
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 160 AIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 446789999999999999988776643
No 111
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=21.71 E-value=1.2e+02 Score=17.29 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=22.9
Q ss_pred CCeeEeecccccCccHHHHHHHHHHHHH
Q psy6616 34 KEIYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 34 r~iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
+.+-+..++|.+.+++..+|+.+.+.+.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 150 HQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred CCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 3456778999999999999998887664
No 112
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=21.57 E-value=57 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.4
Q ss_pred CeeEeecccccCccHHHHHHHHHHHHH
Q psy6616 35 EIYCHMTCATDTNNIQFVFDAVTDVII 61 (71)
Q Consensus 35 ~iy~h~T~AtDt~ni~~vf~~V~d~Il 61 (71)
.+-+..++|.+.++|..+|+.+.+.+.
T Consensus 158 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 158 EICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344678999999999999988876553
No 113
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=20.94 E-value=27 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=12.4
Q ss_pred HHHhhccCCCCCeeEeeccc
Q psy6616 24 QFEAKNKSTTKEIYCHMTCA 43 (71)
Q Consensus 24 kF~~~~~~~~r~iy~h~T~A 43 (71)
+|...++..+|++.+|.+.-
T Consensus 11 ~~~~~~~~~~RP~sphL~iY 30 (140)
T 1zoy_C 11 RFWNKNLGSNRPLSPHITIY 30 (140)
T ss_dssp HHHHHHHSSCCCBCCCTTTS
T ss_pred HHHHhhhhcCCCCCCCCCcc
Confidence 34333344578999998743
No 114
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=20.38 E-value=29 Score=20.79 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=12.3
Q ss_pred HHHhhccCCCCCeeEeeccc
Q psy6616 24 QFEAKNKSTTKEIYCHMTCA 43 (71)
Q Consensus 24 kF~~~~~~~~r~iy~h~T~A 43 (71)
+|...++..+|++.+|.+.-
T Consensus 11 ~~~~~~~~~~RP~sphL~iY 30 (140)
T 2h88_C 11 RFWEKNTKSSRPLSPHISIY 30 (140)
T ss_dssp HHHHHHHTSCCCBCCCTTTS
T ss_pred HHHHhhhhcCCCCCCCCCcc
Confidence 34333344578999998743
No 115
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=20.35 E-value=46 Score=19.80 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.6
Q ss_pred EeecccccCccHHHHHHHHHHHH
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVI 60 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~I 60 (71)
+..++|..-++|..+|+.+.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 56899999999999999887654
No 116
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=20.15 E-value=25 Score=18.91 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=12.2
Q ss_pred CcccCCCCCCCCChHHHHHHHH
Q psy6616 1 MKYFTELLSGAQEYGEAAAYIQ 22 (71)
Q Consensus 1 ~~~Fp~~y~G~~~~~~~~~fi~ 22 (71)
|+|+|+ |.|+.-|.+--+
T Consensus 24 mqCLp~----p~dVk~ALEvYK 41 (65)
T 4b0f_A 24 MQCLPN----PEDVKMALEVYK 41 (65)
T ss_dssp TTSSSS----HHHHHHHHHHHH
T ss_pred HhcCCC----HHHHhHHhheee
Confidence 678888 777776665433
No 117
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=20.15 E-value=1.3e+02 Score=16.99 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhhcc---CCCCCeeEeecccccCccH
Q psy6616 14 YGEAAAYIQAQFEAKNK---STTKEIYCHMTCATDTNNI 49 (71)
Q Consensus 14 ~~~~~~fi~~kF~~~~~---~~~r~iy~h~T~AtDt~ni 49 (71)
+....+++.+....+.. .+..++.+|.....+...+
T Consensus 87 ~~~~~~~i~~~~~~~~~~~~~~~~~vlVHC~aG~~RTg~ 125 (167)
T 3s4o_A 87 LDSWLKLLDTELARQQEDPSVPPPTIGVHCVAGLGRAPI 125 (167)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCCEEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCCCcEEEECCCCCCHHHH
Confidence 45566666666655432 3467999999998886654
No 118
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=20.14 E-value=1.1e+02 Score=19.40 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=20.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhh
Q psy6616 5 TELLSGAQEYGEAAAYIQAQFEAK 28 (71)
Q Consensus 5 p~~y~G~~~~~~~~~fi~~kF~~~ 28 (71)
|.||..|.+.++..+|+..|..+.
T Consensus 166 ~g~ya~p~~iediv~~vv~r~ld~ 189 (209)
T 3zqu_A 166 PGFYHQPQSVEDLVDFVVARILNT 189 (209)
T ss_dssp CCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHh
Confidence 446888999999999999998764
No 119
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=20.08 E-value=2.2e+02 Score=19.45 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=22.3
Q ss_pred EeecccccCccHHHHHHHHHHHHHHh
Q psy6616 38 CHMTCATDTNNIQFVFDAVTDVIIAN 63 (71)
Q Consensus 38 ~h~T~AtDt~ni~~vf~~V~d~Il~~ 63 (71)
+++|+|...+++..+|+.+.+.+...
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 57899999999999999998876543
No 120
>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease FO endonuclease, DNA, DNA-packaging motor, hydrolase; 2.02A {Enterobacteria phage P22}
Probab=20.02 E-value=1.3e+02 Score=18.91 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCCCeeEeecc
Q psy6616 10 GAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTC 42 (71)
Q Consensus 10 G~~~~~~~~~fi~~kF~~~~~~~~r~iy~h~T~ 42 (71)
|++++++.++++++.+.+ ..+++|-+|
T Consensus 121 a~~sv~~GI~~v~~ll~~------~~i~v~~~C 147 (211)
T 4dkw_A 121 GGNSVESGISELRDLMLE------GRFKVFNTC 147 (211)
T ss_dssp SCCCHHHHHHHHHHHHHT------TCEEEETTC
T ss_pred cCCCHHHHHHHHHHHhcC------CeEEEeCCC
Confidence 667899999999888753 247777666
Done!