RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6616
(71 letters)
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 98.2 bits (244), Expect = 8e-27
Identities = 29/69 (42%), Positives = 36/69 (52%)
Query: 2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
YF E ++ A +I F N + K IY H TCATDT NI+FVF AV D I+
Sbjct: 258 DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317
Query: 62 ANNLRGCGL 70
NL+ L
Sbjct: 318 QLNLKEYNL 326
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 89.4 bits (221), Expect = 2e-23
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 2 KYFTELLSGAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
YF E + ++ F K + + +Y H T A +T NI+ VF V D I
Sbjct: 292 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351
Query: 61 IANNLRGCGL 70
+ +NL+ L
Sbjct: 352 LHDNLKQLML 361
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 87.9 bits (217), Expect = 7e-23
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 2 KYFTE---LLSGAQEYGEAAAYIQAQFEAKNKSTT------KEIYCHMTCATDTNNIQFV 52
++F + + SG QE A +++ +FE T + + T A D ++
Sbjct: 276 EWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 335
Query: 53 FDAVTDVIIANNLRGCGL 70
F V + + NL GL
Sbjct: 336 FKLVDETLRRRNLLEAGL 353
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 83.6 bits (206), Expect = 3e-21
Identities = 46/71 (64%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Query: 2 KYFTELLSGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
+ E +G+ Y EAAAYIQ QFE NK TKEIY H TCATDT N+QFVFDAVTDVI
Sbjct: 284 ICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342
Query: 61 IANNLRGCGLY 71
I NNL+ CGL+
Sbjct: 343 IKNNLKDCGLF 353
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 82.2 bits (202), Expect = 1e-20
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 12 QEYGEAAAYIQAQFEAKNKSTT---KEIYCHMTCATDTNNIQFVFDAVTDVIIANNLRGC 68
A +I+ +F + ++ Y H TCA DT NI+ VF+ D+I +LR
Sbjct: 332 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 391
Query: 69 GLY 71
L
Sbjct: 392 ELL 394
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 0.22
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 36 IYCHMT-CATDTNNIQFVFDAV----TDVIIA 62
I + CAT ++ + + + I
Sbjct: 1099 IKTPVGACATSVESVDIGVETILSGKARICIV 1130
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic
active site, N-glycosylation, C cation, chloride anion,
zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A
{Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A*
2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A*
2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A*
3d7d_A* 3d7f_A* ...
Length = 707
Score = 26.8 bits (58), Expect = 0.48
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1 MKYFTEL--LSGAQEYGEAAAYIQAQFEA 27
++ FT+L L+G ++ A IQ Q++
Sbjct: 31 LRSFTKLPHLAGTEQNFLLAKKIQTQWKK 59
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 25.2 bits (55), Expect = 1.9
Identities = 9/56 (16%), Positives = 19/56 (33%)
Query: 7 LLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIA 62
+L+ + A I + TK ++ + + ++ T VII
Sbjct: 96 VLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPDDTQVIIG 151
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase,
water-soluble region, beta-alpha-beta- beta-alpha-beta
fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1
PDB: 2rml_A
Length = 151
Score = 24.7 bits (54), Expect = 2.3
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 22 QAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVIIAN-NL 65
+ + + +I MTCA N I+ + + V A N
Sbjct: 66 KLGYHVVTEKAEFDIE-GMTCAACANRIEKRLNKIEGVANAPVNF 109
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 24.7 bits (54), Expect = 3.2
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 1 MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNN 48
E A+ E I + E +N T C++ + DT +
Sbjct: 23 FTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTD 70
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP}
PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 23.5 bits (51), Expect = 6.7
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 1 MKYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNN 48
+ + A E ++ + +N +T C++ DTN+
Sbjct: 20 FQQALQSFQKASNAEEQNEAMKEINQLRNDFSTMAQICYIRHTIDTND 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.387
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,036,434
Number of extensions: 44417
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 12
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)