RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6616
         (71 letters)



>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 200

 Score = 78.0 bits (191), Expect = 1e-20
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNK-STTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
            YF E         +   ++   F  K +    + +Y H T A +T NI+ VF  V D I
Sbjct: 135 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 194

Query: 61  IANNLR 66
           + +NL+
Sbjct: 195 LHDNLK 200


>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 200

 Score = 75.0 bits (183), Expect = 2e-19
 Identities = 28/65 (43%), Positives = 35/65 (53%)

Query: 2   KYFTELLSGAQEYGEAAAYIQAQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
            YF E     ++   A  +I   F   N  + K IY H TCATDT NI+FVF AV D I+
Sbjct: 136 DYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195

Query: 62  ANNLR 66
             NL+
Sbjct: 196 QLNLK 200


>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 221

 Score = 73.2 bits (179), Expect = 2e-18
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 12  QEYGEAAAYIQAQFEAKNKSTT---KEIYCHMTCATDTNNIQFVFDAVTDVIIANNLR 66
                A  +I+ +F   + ++       Y H TCA DT NI+ VF+   D+I   +LR
Sbjct: 162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 219


>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 195

 Score = 65.0 bits (157), Expect = 1e-15
 Identities = 41/56 (73%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 10  GAQEYGEAAAYIQAQFEAKNKS-TTKEIYCHMTCATDTNNIQFVFDAVTDVIIANN 64
           G+  Y EAAAYIQ QFE  NK   TKEIY H TCATDT N+QFVFDAVTDVII NN
Sbjct: 140 GSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195


>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
           sapiens), ARF6 [TaxId: 9606]}
          Length = 173

 Score = 23.8 bits (50), Expect = 1.9
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 23  AQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
            +     +   +  Y   +CAT  + +      +T   
Sbjct: 135 QEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172


>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
          [TaxId: 671]}
          Length = 291

 Score = 22.9 bits (48), Expect = 5.0
 Identities = 5/24 (20%), Positives = 12/24 (50%)

Query: 4  FTELLSGAQEYGEAAAYIQAQFEA 27
          FT          +A+ +I ++++A
Sbjct: 32 FTNRFYTTTSGAQASDWIASEWQA 55


>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
           sapiens), ARL5A [TaxId: 9606]}
          Length = 177

 Score = 22.7 bits (47), Expect = 5.3
 Identities = 4/38 (10%), Positives = 11/38 (28%)

Query: 23  AQFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVI 60
           +QF         + +    CA     +    + +   +
Sbjct: 138 SQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175


>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 186

 Score = 22.5 bits (47), Expect = 6.3
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 24  QFEAKNKSTTKEIYCHMTCATDTNNIQFVFDAVTDVII 61
           + +A+  +    I    T A    N++   + + D+I+
Sbjct: 141 ERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178


>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 175

 Score = 21.9 bits (45), Expect = 9.0
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 34  KEIYCHMTCATDTNNIQFVFDAVTDVIIANN 64
            +I   +T A +  N+   F+ +    +  N
Sbjct: 144 GDIPLFLTSAKNAINVDTAFEEIARSALQQN 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,558
Number of extensions: 8030
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 13
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)