BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6618
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural
Basis For Rgs16-Mediated Deactivation
Length = 333
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 41/51 (80%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERET 91
+++IIHE GF+ ED KQY+PVVYSNTIQSL AI+RAM L + + + ER+T
Sbjct: 31 QMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVEYGDKERKT 81
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE GF+ ED KQY+PVVYSNTIQS I+
Sbjct: 34 IIHEDGFSGEDVKQYKPVVYSNTIQSLAAIV 64
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha
Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha
Subunit
Length = 313
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 20 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 68
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 23 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 53
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A
Designed Helical Peptide Derived From The Goloco Motif
Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A
Designed Helical Peptide Derived From The Goloco Motif
Of Rgs14
Length = 327
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 25 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 73
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 28 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 58
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The
Goloco Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The
Goloco Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The
Goloco Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The
Goloco Motif Of Rgs14
Length = 325
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 23 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 71
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 26 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 56
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 23 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 71
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 26 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 56
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 22 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 70
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 25 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 55
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 21 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 69
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 24 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 54
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 27 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 75
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 30 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 60
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 52 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 100
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 55 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 85
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 28 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 76
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 31 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 61
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 26 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 74
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 29 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 59
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 26 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 74
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 29 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 59
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F ++ R
Sbjct: 52 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR 100
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 55 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 85
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 21 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 69
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 24 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 54
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound
To Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound
To Gppnhp
Length = 353
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 51 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 99
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 54 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 84
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 58 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 106
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 61 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 91
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 54 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 102
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 57 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 87
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 51 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 99
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 54 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 84
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 51 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 99
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 54 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 84
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With
Gdp Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1
Induced By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 51 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 99
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 54 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 84
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 51 QMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 99
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 54 IIHEAGYSEEECKQYKAVVYSNTIQSIIAII 84
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++I HE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 52 QMKICHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR 100
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
I HE+G++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 55 ICHEAGYSEEECKQYKAVVYSNTIQSIIAII 85
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE G++ ++ KQY+ VVYSNTIQS++AI+RAM L I F R
Sbjct: 21 QMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR 69
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE G++ ++ KQY+ VVYSNTIQS + I+
Sbjct: 24 IIHEDGYSEDECKQYKVVVYSNTIQSIIAII 54
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE G++ ++ KQY+ VVYSNTIQS++AI+RAM L I F R
Sbjct: 28 QMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR 76
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE G++ ++ KQY+ VVYSNTIQS + I+
Sbjct: 31 IIHEDGYSEDECKQYKVVVYSNTIQSIIAII 61
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE G++ ++ KQY+ VVYSNTIQS++AI+RAM L I F R
Sbjct: 28 QMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR 76
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE G++ ++ KQY+ VVYSNTIQS + I+
Sbjct: 31 IIHEDGYSEDECKQYKVVVYSNTIQSIIAII 61
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit
Alpha ( Gnai3) In Complex With An Engineered Regulator
Of G- Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNER 89
+++IIHE G++ ++ KQY+ VVYSNTIQS++AI+RAM L I F R
Sbjct: 51 QMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR 99
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIHE G++ ++ KQY+ VVYSNTIQS + I+
Sbjct: 54 IIHEDGYSEDECKQYKVVVYSNTIQSIIAII 84
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The
Rgs Domain Of Rgs9, The Gamma Subunit Of
Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The
Rgs Domain Of Rgs9, The Gamma Subunit Of
Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT
[(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The
Rgs Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The
Rgs Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 40/58 (68%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLH 98
+++IIH+ G++ E+ ++ ++Y NT+QS++AI+RAM L+I + ++ R+ +H
Sbjct: 23 QMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMH 80
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH+ G++ E+ ++ ++Y NT+QS + I+
Sbjct: 26 IIHQDGYSLEECLEFIAIIYGNTLQSILAIV 56
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 40/58 (68%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLH 98
+++IIH+ G++ E+ ++ ++Y NT+QS++AI+RAM L+I + ++ R+ +H
Sbjct: 22 QMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMH 79
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH+ G++ E+ ++ ++Y NT+QS + I+
Sbjct: 25 IIHQDGYSLEECLEFIAIIYGNTLQSILAIV 55
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 39/58 (67%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLH 98
+++IIH+ ++ E+ ++ ++Y NT+QS++AI+RAM L+I + ++ R+ +H
Sbjct: 54 QMKIIHQDPYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMH 111
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH+ ++ E+ ++ ++Y NT+QS + I+
Sbjct: 57 IIHQDPYSLEECLEFIAIIYGNTLQSILAIV 87
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 36/50 (72%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERE 90
+ +IIH+ G++ E+ ++ ++Y NT+QS++AI+RA L+I + ++ R+
Sbjct: 48 QXKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSARQ 97
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH+ G++ E+ ++ ++Y NT+QS + I+
Sbjct: 51 IIHQDGYSLEECLEFIAIIYGNTLQSILAIV 81
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISF 84
++RIIH SG++ ED + + +VY N ++ A++RAM L I +
Sbjct: 46 QMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY 89
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 IIHESGFTSEDFKQYRPVVYSN---TIQSTVRILGTF 34
IIH SG++ ED + + +VY N +Q+ +R + T
Sbjct: 49 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL 85
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISF 84
++RIIH SG++ ED + + +VY N ++ A++RAM L I +
Sbjct: 52 QMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY 95
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 IIHESGFTSEDFKQYRPVVYSN---TIQSTVRILGTF 34
IIH SG++ ED + + +VY N +Q+ +R + T
Sbjct: 55 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL 91
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta
Gamma In Complex With An Inhibitor Ym-254890
Length = 355
Score = 42.4 bits (98), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISF 84
++RIIH SG++ ED + + +VY N ++ A++RAM L I +
Sbjct: 54 QMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY 97
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 IIHESGFTSEDFKQYRPVVYSN---TIQSTVRILGTF 34
IIH SG++ ED + + +VY N +Q+ +R + T
Sbjct: 57 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL 93
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISF 84
++RIIH SG++ ED + + +VY N ++ A++RAM L I +
Sbjct: 52 QMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY 95
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 IIHESGFTSEDFKQYRPVVYSN---TIQSTVRILGTF 34
IIH SG++ ED + + +VY N +Q+ +R + T
Sbjct: 55 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL 91
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFS 85
++RIIH SG++ ED + + +VY N ++ A++RAM L I +
Sbjct: 26 QMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYK 70
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 IIHESGFTSEDFKQYRPVVYSN---TIQSTVRILGTF 34
IIH SG++ ED + + +VY N +Q+ +R + T
Sbjct: 29 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL 65
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAG 93
++RIIH F +++RP +YSN I+ + ++ A L I + +N+ + G
Sbjct: 31 QMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHG 83
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH F +++RP +YSN I+ +R+L
Sbjct: 34 IIHGQDFDQRAREEFRPTIYSNVIKG-MRVL 63
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAG 93
++RIIH F +++RP +YSN I+ + ++ A L I + +N+ + G
Sbjct: 52 QMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHG 104
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH F +++RP +YSN I+ +R+L
Sbjct: 55 IIHGQDFDQRAREEFRPTIYSNVIKG-MRVL 84
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAG 93
++RIIH F +++RP +YSN I+ + ++ A L I + +N+ + G
Sbjct: 28 QMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHG 80
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH F +++RP +YSN I+ +R+L
Sbjct: 31 IIHGQDFDQRAREEFRPTIYSNVIKG-MRVL 60
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAG 93
++RIIH F +++RP +YSN I+ + ++ A L I + +N+ + G
Sbjct: 28 QMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHG 80
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH F +++RP +YSN I+ +R+L
Sbjct: 31 IIHGQDFDQRAREEFRPTIYSNVIKG-MRVL 60
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 31 LGTFLLSKWLELRII----HESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSN 86
LG L+ R+I H+S ED ++PV LVA LRAMPNL + +
Sbjct: 442 LGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPV-------ELVAALRAMPNLQVIRPS 494
Query: 87 NERETAG-----LSGLH 98
++ ET+G LS +H
Sbjct: 495 DQTETSGAWAVALSSIH 511
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETA 92
+++++ ++GF + K Y PV+++N Q+ ++ + + + F+ NE ++A
Sbjct: 28 QIKLLFQTGFDEGELKSYVPVIHANVYQT----IKLLHDGTKEFAQNETDSA 75
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
++ ++GF + K Y PV+++N Q T+++L
Sbjct: 31 LLFQTGFDEGELKSYVPVIHANVYQ-TIKLL 60
>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
Length = 609
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 50 FTSEDFKQYRP--VVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLHCGAPWFN 105
++ E+ KQ R + SNTI + + + I+ NN++ AGL+ G P FN
Sbjct: 71 YSPENEKQLRAELLSISNTIAGI-----KLDDADITTKNNQQVMAGLTRYFAGEPNFN 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,200,175
Number of Sequences: 62578
Number of extensions: 108197
Number of successful extensions: 221
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 82
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)