Query psy6618
Match_columns 109
No_of_seqs 139 out of 1142
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 22:44:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 99.6 1.7E-17 5.7E-22 119.8 0.5 88 1-94 29-117 (327)
2 4fid_A G protein alpha subunit 99.6 3.2E-16 1.1E-20 113.6 0.2 84 1-94 27-111 (340)
3 1cip_A Protein (guanine nucleo 99.5 1.1E-15 3.9E-20 111.1 1.8 88 1-93 54-142 (353)
4 1azs_C GS-alpha; complex (lyas 99.4 2.6E-14 8.7E-19 105.6 -0.9 88 1-94 62-167 (402)
5 2xtz_A Guanine nucleotide-bind 99.4 1.3E-13 4.5E-18 100.4 2.0 89 1-94 31-127 (354)
6 1zcb_A G alpha I/13; GTP-bindi 99.3 8E-13 2.7E-17 96.4 2.7 89 1-94 55-151 (362)
7 3ohm_A Guanine nucleotide-bind 99.1 8.7E-11 3E-15 84.7 5.8 65 36-100 21-85 (327)
8 1cip_A Protein (guanine nucleo 98.9 1.3E-09 4.6E-14 79.2 5.0 64 36-99 46-109 (353)
9 4fid_A G protein alpha subunit 98.9 2.4E-09 8.3E-14 77.5 5.0 58 36-93 19-76 (340)
10 1azs_C GS-alpha; complex (lyas 98.7 1.5E-08 5E-13 74.9 4.7 66 36-101 54-136 (402)
11 1zcb_A G alpha I/13; GTP-bindi 98.4 3.5E-07 1.2E-11 66.7 6.3 66 36-101 47-112 (362)
12 2xtz_A Guanine nucleotide-bind 98.1 1.7E-06 5.9E-11 62.8 3.9 61 36-96 23-90 (354)
13 1l6x_B Minimized B-domain of p 79.1 0.43 1.5E-05 22.7 0.1 22 1-22 12-33 (34)
14 1zda_A Mini protein A domain, 65.9 1.1 3.8E-05 21.7 -0.2 21 1-21 17-37 (38)
15 3qwo_C Motavizumab epitope sca 64.2 3 0.0001 22.0 1.3 34 1-34 13-46 (57)
16 2kzi_A Engineered protein, ZHE 57.6 4.6 0.00016 22.2 1.3 34 1-34 28-61 (70)
17 1zxg_A Immunoglobulin G bindin 45.2 5.5 0.00019 21.2 0.3 34 1-34 16-49 (59)
18 1dee_G Immunoglobulin G bindin 40.8 13 0.00044 19.4 1.3 34 1-34 12-45 (54)
19 1gea_A Pituitary adenylate cyc 28.2 23 0.00079 15.6 0.9 7 3-9 1-8 (26)
20 1b0n_B Protein (SINI protein); 27.7 25 0.00087 18.5 1.2 14 5-18 25-38 (57)
21 1g6u_A Domain swapped dimer; d 27.2 27 0.00091 17.0 1.1 12 4-15 14-25 (48)
22 3ih6_A Putative zinc protease; 25.8 1.2E+02 0.0041 18.6 5.0 26 4-29 113-138 (197)
23 2oo9_A E3 ubiquitin-protein li 24.7 62 0.0021 16.2 2.2 24 4-27 13-36 (46)
24 1z96_A DNA-damage, UBA-domain 24.5 50 0.0017 15.1 1.9 22 6-27 15-36 (40)
25 3mhs_C SAGA-associated factor 23.1 1E+02 0.0034 18.1 3.3 32 13-44 9-40 (99)
26 3l46_A Protein ECT2; alternati 22.0 41 0.0014 19.9 1.5 10 4-13 29-38 (112)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.64 E-value=1.7e-17 Score=119.81 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=69.3
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhhhhhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhH-HHHHHHhhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSL-VAILRAMPN 79 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~~~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~-~~i~~ai~~ 79 (109)
|||++|||++|+++||++||+|++++|++||+|| +.++|+++++.+......+..... .....+ ++++++++.
T Consensus 29 iih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~-----~~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~i~~ 102 (327)
T 3ohm_A 29 IIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAM-----DTLKIPYKYEHNKAHAQLVREVDV-EKVSAFENPYVDAIKS 102 (327)
T ss_dssp HHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHH-----HHTTCCCSSTHHHHHHHHHHTCCG-GGCCCCCTTHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH-----HhcCCCCCCchhHHHHHHHhcccc-cccccccHHHHHHHHH
Confidence 6899999999999999999999999999999999 899999887655444333322211 111234 789999999
Q ss_pred hCCCCCChhhHHhhh
Q psy6618 80 LSISFSNNERETAGL 94 (109)
Q Consensus 80 Lw~d~~~~~~~~~~~ 94 (109)
||.|+++++.-.+..
T Consensus 103 lW~d~~iq~~~~r~~ 117 (327)
T 3ohm_A 103 LWNDPGIQECYDRRR 117 (327)
T ss_dssp HHTCHHHHHHHHGGG
T ss_pred HHcCHHHHHHHHccc
Confidence 999999998766554
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.55 E-value=3.2e-16 Score=113.57 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=68.5
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhhhhhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhH-HHHHHHhhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSL-VAILRAMPN 79 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~~~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~-~~i~~ai~~ 79 (109)
|||++|||++|+++|+++||+|++++|+.|++|| ++++|.++++.++..... +......+ ++++++++.
T Consensus 27 ii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~-----~~l~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~ 96 (340)
T 4fid_A 27 ILFGGGFPEQERATHKSSICSNVVTCMRTLIEQS-----AILNHPMKYQPKSKEFTT-----EDPVTLPFSPELVGDVEA 96 (340)
T ss_dssp HHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHH-----HHTTCCCSCCCCSGGGSC-----CSCCCSSCCTTHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHhCCCCCChhhHHHHhh-----cccCCCCCCHHHHHHHHH
Confidence 6899999999999999999999999999999999 899999988766544311 11112234 789999999
Q ss_pred hCCCCCChhhHHhhh
Q psy6618 80 LSISFSNNERETAGL 94 (109)
Q Consensus 80 Lw~d~~~~~~~~~~~ 94 (109)
||.|+++++.-.+..
T Consensus 97 lW~d~~iq~~~~r~~ 111 (340)
T 4fid_A 97 LWADEGIQATYEESA 111 (340)
T ss_dssp HHHSHHHHHHHHTCT
T ss_pred HHcCHHHHHHHHhcc
Confidence 999999998766544
No 3
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.54 E-value=1.1e-15 Score=111.15 Aligned_cols=88 Identities=27% Similarity=0.345 Sum_probs=68.5
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhhhhhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhH-HHHHHHhhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSL-VAILRAMPN 79 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~~~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~-~~i~~ai~~ 79 (109)
|||++|||++|+.+|+++||.|++++|++|++|| +.++|.+.++.+.+....+...........+ +++++++..
T Consensus 54 ii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 128 (353)
T 1cip_A 54 IIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAM-----GRLKIDFGDAARADDARQLFVLAGAAEEGFMTAELAGVIKR 128 (353)
T ss_dssp HHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHHH-----HHHTCCCSSTTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCCCCcchHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 6899999999999999999999999999999999 8999998876655444433332211100224 789999999
Q ss_pred hCCCCCChhhHHhh
Q psy6618 80 LSISFSNNERETAG 93 (109)
Q Consensus 80 Lw~d~~~~~~~~~~ 93 (109)
||.|+++++.-.+.
T Consensus 129 lw~d~~iq~~~~~~ 142 (353)
T 1cip_A 129 LWKDSGVQACFNRS 142 (353)
T ss_dssp HHHCHHHHHHHTTG
T ss_pred HHCCHHHHHHHHhh
Confidence 99999998765443
No 4
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.38 E-value=2.6e-14 Score=105.62 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=60.5
Q ss_pred CccCCCCCHH---------------HHhcchhHhHhhHHHHHHHHHHhhhhhhhhhhh--hhccCCCCHHHhhchhhhhh
Q psy6618 1 IIHESGFTSE---------------DFKQYRPVVYSNTIQSTVRILGTFLLSKWLELR--IIHESGFTSEDFKQYRPVVY 63 (109)
Q Consensus 1 iih~~gfs~e---------------e~~~~~~~I~~Nii~~~~~li~a~~~~~~kql~--I~~~~~~~~~e~~~~~~~i~ 63 (109)
|||++|||++ |+++|+++||+|++++|++|++|| ..+. +.+.++.+......+.....
T Consensus 62 iih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~-----~~l~~~i~~~~~~~~~~~~~~~~~~~ 136 (402)
T 1azs_C 62 ILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAM-----SNLVPPVELANPENQFRVDYILSVMN 136 (402)
T ss_dssp HHHCCC-------------------CTTHHHHHHHHHHHHHHHHHHHHH-----HHSSSCCCCSSGGGHHHHHHHHHTTT
T ss_pred HHhCCCCChHHhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCcccCCchhHHHHHHHHhhcc
Confidence 6899999986 678899999999999999999999 7886 55555544433322222211
Q ss_pred hchhHhH-HHHHHHhhhhCCCCCChhhHHhhh
Q psy6618 64 SNTIQSL-VAILRAMPNLSISFSNNERETAGL 94 (109)
Q Consensus 64 ~n~~~~~-~~i~~ai~~Lw~d~~~~~~~~~~~ 94 (109)
. ....+ +++++++..||.|+++++.-.+..
T Consensus 137 ~-~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~ 167 (402)
T 1azs_C 137 V-PDFDFPPEFYEHAKALWEDEGVRACYERSN 167 (402)
T ss_dssp C-SSCCCCHHHHHHHHHHHHCHHHHHHHTTGG
T ss_pred c-CCCCCCHHHHHHHHHHHcCHHHHHHHHhcc
Confidence 1 01234 789999999999999998665543
No 5
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.36 E-value=1.3e-13 Score=100.36 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=63.7
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhhhhhhhhhhhhhccCCCC---HHHhhchhhhhhh---ch-hHhH-HH
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFT---SEDFKQYRPVVYS---NT-IQSL-VA 72 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~~~~~~kql~I~~~~~~~---~~e~~~~~~~i~~---n~-~~~~-~~ 72 (109)
|+|++||+++|+.+|+++||.|++++|+.|++|| ..+.+...+... .++.......+.. .. ...+ ++
T Consensus 31 ~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~-----~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (354)
T 2xtz_A 31 LLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGT-----KEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKD 105 (354)
T ss_dssp HHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHH-----HHHHHHCSSCCTTCCCHHHHHHHHHHHHHHHHCSSCCCCHH
T ss_pred HHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCccccccccCChhHHHHHHHHHhcccccccccCCHH
Confidence 5899999999999999999999999999999999 888877642210 1122211111110 00 1123 79
Q ss_pred HHHHhhhhCCCCCChhhHHhhh
Q psy6618 73 ILRAMPNLSISFSNNERETAGL 94 (109)
Q Consensus 73 i~~ai~~Lw~d~~~~~~~~~~~ 94 (109)
++++++.||.|+++++.-.+..
T Consensus 106 ~~~~i~~LW~D~~vq~~~~r~~ 127 (354)
T 2xtz_A 106 IAEGIETLWKDPAIQETCARGN 127 (354)
T ss_dssp HHHHHHHHTTCHHHHHHHTTGG
T ss_pred HHHHHHHHHCCHHHHHHHHhcc
Confidence 9999999999999988765543
No 6
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.29 E-value=8e-13 Score=96.43 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=68.0
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhhhhhhhhhhhhhccCCCCHHHhhchhhhhhh-c------h-hHhHHH
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFTSEDFKQYRPVVYS-N------T-IQSLVA 72 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~~~~~~kql~I~~~~~~~~~e~~~~~~~i~~-n------~-~~~~~~ 72 (109)
|+|++||+++|+.+|++.|+.|++++|+.||+|| +.++|.+.++.+.+....+...... . . ...+++
T Consensus 55 i~~~~~~~~~e~~~~~~~i~~n~~~s~~~il~a~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 129 (362)
T 1zcb_A 55 IIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAR-----EKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQ 129 (362)
T ss_dssp HHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHH-----HHTTCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHHHH
T ss_pred HHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH-----HHcCCCCCCcccHHHHHHHHhhcccccccccccCcchhHHH
Confidence 5799999999999999999999999999999999 8999988776554433332221110 0 0 122389
Q ss_pred HHHHhhhhCCCCCChhhHHhhh
Q psy6618 73 ILRAMPNLSISFSNNERETAGL 94 (109)
Q Consensus 73 i~~ai~~Lw~d~~~~~~~~~~~ 94 (109)
++++++.||.|+++++.-.+..
T Consensus 130 ~~~~i~~LW~d~~iq~~~~r~~ 151 (362)
T 1zcb_A 130 YLPAIRALWEDSGIQNAYDRRR 151 (362)
T ss_dssp HHHHHHHHHHCHHHHHHHHTGG
T ss_pred HHHHHHHHHCCHHHHHHHHhcc
Confidence 9999999999999998765543
No 7
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.11 E-value=8.7e-11 Score=84.72 Aligned_cols=65 Identities=26% Similarity=0.447 Sum_probs=61.9
Q ss_pred hhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhHHHHHHHhhhhCCCCCChhhHHhhhhccccC
Q psy6618 36 LSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLHCG 100 (109)
Q Consensus 36 ~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~~~i~~ai~~Lw~d~~~~~~~~~~~~i~~~~ 100 (109)
||++|||+|+|++||+++|+..++.+|+.|+..+|..+++||+.|.++++.|+++.+++.++.+.
T Consensus 21 STi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~~~~~ 85 (327)
T 3ohm_A 21 STFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVD 85 (327)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999999987664
No 8
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.90 E-value=1.3e-09 Score=79.16 Aligned_cols=64 Identities=42% Similarity=0.658 Sum_probs=60.7
Q ss_pred hhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhHHHHHHHhhhhCCCCCChhhHHhhhhcccc
Q psy6618 36 LSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLHC 99 (109)
Q Consensus 36 ~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~~~i~~ai~~Lw~d~~~~~~~~~~~~i~~~ 99 (109)
||++|||+|+|++||+++|+..++.+|+.|+..+|..++++|+.|.++++.++++..++.++.+
T Consensus 46 ST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 109 (353)
T 1cip_A 46 STIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVL 109 (353)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCSSTTHHHHHHHHHHH
T ss_pred hhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999888888766
No 9
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.85 E-value=2.4e-09 Score=77.54 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=54.8
Q ss_pred hhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhHHHHHHHhhhhCCCCCChhhHHhh
Q psy6618 36 LSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAG 93 (109)
Q Consensus 36 ~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~~~i~~ai~~Lw~d~~~~~~~~~~ 93 (109)
||++|||+|+|++||+++|+..++.+|+.|+..+|..+++||+.|.++++.++++.++
T Consensus 19 STi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~ 76 (340)
T 4fid_A 19 STIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEF 76 (340)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGG
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHH
Confidence 8999999999999999999999999999999999999999999999999998887665
No 10
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.69 E-value=1.5e-08 Score=74.92 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=54.1
Q ss_pred hhhhhhhhhhccCCCCHH---------------HhhchhhhhhhchhHhHHHHHHHhhhhC--CCCCChhhHHhhhhccc
Q psy6618 36 LSKWLELRIIHESGFTSE---------------DFKQYRPVVYSNTIQSLVAILRAMPNLS--ISFSNNERETAGLSGLH 98 (109)
Q Consensus 36 ~~~~kql~I~~~~~~~~~---------------e~~~~~~~i~~n~~~~~~~i~~ai~~Lw--~d~~~~~~~~~~~~i~~ 98 (109)
||++|||+|+|++||+.+ |+..++..|+.|+..+|..+++||..|- +++..|+++..++.++.
T Consensus 54 STi~KQmkiih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i~~~~~~~~~~~~~~~~ 133 (402)
T 1azs_C 54 STIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILS 133 (402)
T ss_dssp HHHHHHHHHHHCCC-------------------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCSSGGGHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCCChHHhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHh
Confidence 899999999999999976 4556778889999999999999999996 78889999988888877
Q ss_pred cCC
Q psy6618 99 CGA 101 (109)
Q Consensus 99 ~~~ 101 (109)
...
T Consensus 134 ~~~ 136 (402)
T 1azs_C 134 VMN 136 (402)
T ss_dssp TTT
T ss_pred hcc
Confidence 644
No 11
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.45 E-value=3.5e-07 Score=66.66 Aligned_cols=66 Identities=24% Similarity=0.450 Sum_probs=61.6
Q ss_pred hhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhHHHHHHHhhhhCCCCCChhhHHhhhhccccCC
Q psy6618 36 LSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLHCGA 101 (109)
Q Consensus 36 ~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~~~i~~ai~~Lw~d~~~~~~~~~~~~i~~~~~ 101 (109)
||++|||+|.|..|++++++..++..++.|+..++..++++++.|.+++..++++..++.++.+..
T Consensus 47 ST~~kq~~i~~~~~~~~~e~~~~~~~i~~n~~~s~~~il~a~~~~~i~~~~~~~~~~~~~~~~~~~ 112 (362)
T 1zcb_A 47 STFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDT 112 (362)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSGGGHHHHHHHHTSCS
T ss_pred HHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999999999999999999988888877654
No 12
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.13 E-value=1.7e-06 Score=62.84 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=51.4
Q ss_pred hhhhhhhhhhccCCCCHHHhhchhhhhhhchhHhHHHHHHHhhhhCCCCC-------ChhhHHhhhhc
Q psy6618 36 LSKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFS-------NNERETAGLSG 96 (109)
Q Consensus 36 ~~~~kql~I~~~~~~~~~e~~~~~~~i~~n~~~~~~~i~~ai~~Lw~d~~-------~~~~~~~~~~i 96 (109)
||++|||+|.|..|++++|+..++..|+.|+..+|..++++|..|-.+.. .++++..++.+
T Consensus 23 sT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~~~~~ 90 (354)
T 2xtz_A 23 STIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKL 90 (354)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHHHHHH
Confidence 78899999999999999999999999999999999999999999854433 45565555554
No 13
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=79.08 E-value=0.43 Score=22.66 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=18.4
Q ss_pred CccCCCCCHHHHhcchhHhHhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSN 22 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~N 22 (109)
|+|..+.|+|.|..|...|..+
T Consensus 12 vLh~~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 12 ALHDPNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHhHHHHHhcc
Confidence 4789999999999998877654
No 14
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=65.94 E-value=1.1 Score=21.73 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHhcchhHhHh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYS 21 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~ 21 (109)
|+|..+.|+|.|..|...+..
T Consensus 17 vLh~~nLtEeQrn~yI~slkd 37 (38)
T 1zda_A 17 ALHDPNLNEEQRNAKIKSIRD 37 (38)
T ss_dssp HHSCSSSCTTHHHHHHHHHSC
T ss_pred HHcCCCCCHHHHHhHHHHhhc
Confidence 578999999999998876643
No 15
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=64.24 E-value=3 Score=22.00 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=28.9
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTF 34 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~ 34 (109)
|+|..|.+++.|..|...|..+==.|-..+.+|-
T Consensus 13 il~lpnLtEeqRn~yI~slkdDPs~S~~v~~Ea~ 46 (57)
T 3qwo_C 13 IANLPNLNEEQRSAFLSSINDDPSQSANLLAEAK 46 (57)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHcCCCcchhhccchHhhhccCcchhHHHHHhhh
Confidence 5788999999999999999888877877777664
No 16
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=57.63 E-value=4.6 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=29.1
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTF 34 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~ 34 (109)
|+|..|.+++.|..|.+.++.|=-.|-..+.+|-
T Consensus 28 iL~~pnLtEeQrngfI~slkddPs~Sqev~aEa~ 61 (70)
T 2kzi_A 28 IALLPNLNNQQKRAFIRSLYDDPSQSANLLAEAK 61 (70)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHcCCCcchhhhhccccccccCccHHHHHHhhhc
Confidence 4688999999999999999999888887777664
No 17
>1zxg_A Immunoglobulin G binding protein A; IGG-binding, phage display, immune system/protein binding complex; NMR {Staphylococcus aureus}
Probab=45.15 E-value=5.5 Score=21.16 Aligned_cols=34 Identities=6% Similarity=0.119 Sum_probs=27.3
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTF 34 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~ 34 (109)
|+|..|.|++.|..|.+.+..|=-.|-..+.++-
T Consensus 16 vl~~pnltEeqrngyI~slkddPs~sqev~~ea~ 49 (59)
T 1zxg_A 16 VLNMPNLNEDQRNAFIQSLKDDPSQSANVLAEAQ 49 (59)
T ss_dssp HHCSTTCCSSHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHcCCCcchhhhcccccccccCccHHHHHHHhhh
Confidence 4788999999999999988888777776666554
No 18
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=40.84 E-value=13 Score=19.39 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=26.7
Q ss_pred CccCCCCCHHHHhcchhHhHhhHHHHHHHHHHhh
Q psy6618 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTF 34 (109)
Q Consensus 1 iih~~gfs~ee~~~~~~~I~~Nii~~~~~li~a~ 34 (109)
|+|..|.+++-|..|.+.+..|=-.|-..+-+|-
T Consensus 12 il~lp~lte~qrng~i~slkddPs~s~ev~~ea~ 45 (54)
T 1dee_G 12 ILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAK 45 (54)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHcCCCcchhhhcccccccccCcchhHHHHHhhh
Confidence 5788999999999999988887766666665554
No 19
>1gea_A Pituitary adenylate cyclase activating polypeptide; beta coil, consecutive beta turns, type-II beta turn, type- I beta turn, helix, neuropeptide; HET: LYN; NMR {Synthetic} SCOP: j.81.1.1
Probab=28.24 E-value=23 Score=15.59 Aligned_cols=7 Identities=57% Similarity=1.108 Sum_probs=4.3
Q ss_pred cCCC-CCH
Q psy6618 3 HESG-FTS 9 (109)
Q Consensus 3 h~~g-fs~ 9 (109)
|++| ||.
T Consensus 1 Hsdg~FTs 8 (26)
T 1gea_A 1 HSDGIFTD 8 (26)
T ss_dssp CCCSSSSS
T ss_pred CCCccchh
Confidence 5666 666
No 20
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=27.71 E-value=25 Score=18.45 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=10.1
Q ss_pred CCCCHHHHhcchhH
Q psy6618 5 SGFTSEDFKQYRPV 18 (109)
Q Consensus 5 ~gfs~ee~~~~~~~ 18 (109)
-|||.+|.++|...
T Consensus 25 lGlsleEIrefL~l 38 (57)
T 1b0n_B 25 ANISPEEIRKYLLL 38 (57)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 48888888776543
No 21
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.18 E-value=27 Score=17.04 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=9.1
Q ss_pred CCCCCHHHHhcc
Q psy6618 4 ESGFTSEDFKQY 15 (109)
Q Consensus 4 ~~gfs~ee~~~~ 15 (109)
..|||.||+...
T Consensus 14 kegfspeelaal 25 (48)
T 1g6u_A 14 KEGFSPEELAAL 25 (48)
T ss_dssp HTTCSHHHHHHH
T ss_pred HcCCCHHHHHHH
Confidence 479999998543
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=25.76 E-value=1.2e+02 Score=18.59 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCCCHHHHhcchhHhHhhHHHHHHH
Q psy6618 4 ESGFTSEDFKQYRPVVYSNTIQSTVR 29 (109)
Q Consensus 4 ~~gfs~ee~~~~~~~I~~Nii~~~~~ 29 (109)
.+|++++|+..-|..+..+...++..
T Consensus 113 ~~~it~~el~~ak~~~~~~~~~~~~~ 138 (197)
T 3ih6_A 113 SKPFSQEELERARSKWLTAWQQTYAD 138 (197)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 45788888888877777776655543
No 23
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=24.67 E-value=62 Score=16.21 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=14.3
Q ss_pred CCCCCHHHHhcchhHhHhhHHHHH
Q psy6618 4 ESGFTSEDFKQYRPVVYSNTIQST 27 (109)
Q Consensus 4 ~~gfs~ee~~~~~~~I~~Nii~~~ 27 (109)
+.||+.++..+-...-..||-.+-
T Consensus 13 s~Gf~~~~~~rAL~ia~Nnie~A~ 36 (46)
T 2oo9_A 13 SQGYSYQDIQKALVIAQNNIEMAK 36 (46)
T ss_dssp HTTBCHHHHHHHHHHTTTCHHHHH
T ss_pred HcCCCHHHHHHHHHHhhccHHHHH
Confidence 468888777655555555554433
No 24
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.51 E-value=50 Score=15.14 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=10.5
Q ss_pred CCCHHHHhcchhHhHhhHHHHH
Q psy6618 6 GFTSEDFKQYRPVVYSNTIQST 27 (109)
Q Consensus 6 gfs~ee~~~~~~~I~~Nii~~~ 27 (109)
||+.++.+.....-..|+=.++
T Consensus 15 Gf~~~~a~~AL~~~~~n~e~A~ 36 (40)
T 1z96_A 15 GFDPLEAAQALDAANGDLDVAA 36 (40)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 6776655444333333443333
No 25
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=23.07 E-value=1e+02 Score=18.09 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=18.6
Q ss_pred hcchhHhHhhHHHHHHHHHHhhhhhhhhhhhh
Q psy6618 13 KQYRPVVYSNTIQSTVRILGTFLLSKWLELRI 44 (109)
Q Consensus 13 ~~~~~~I~~Nii~~~~~li~a~~~~~~kql~I 44 (109)
..--.-||.|++++|-.=|-+..++.-++++.
T Consensus 9 ~~~s~~Iy~nLl~~~i~dIv~~e~~~~k~l~~ 40 (99)
T 3mhs_C 9 DSISNGILNNLLTTLIQDIVARETTQQQLLKT 40 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456799999999854444433333344443
No 26
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=22.03 E-value=41 Score=19.92 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=7.0
Q ss_pred CCCCCHHHHh
Q psy6618 4 ESGFTSEDFK 13 (109)
Q Consensus 4 ~~gfs~ee~~ 13 (109)
-.||+.+|+.
T Consensus 29 ~sGf~~~er~ 38 (112)
T 3l46_A 29 FLGFSDEEKT 38 (112)
T ss_dssp EESCCHHHHH
T ss_pred EeCCCHHHHH
Confidence 3578887774
Done!