RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6618
(109 letters)
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 55.5 bits (133), Expect = 1e-10
Identities = 9/67 (13%), Positives = 31/67 (46%)
Query: 39 WLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLH 98
+ +++++ ++GF + K Y PV+++N Q++ + + + +++ + +
Sbjct: 26 FKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIA 85
Query: 99 CGAPWFN 105
G
Sbjct: 86 IGEKLSE 92
Score = 39.3 bits (91), Expect = 6e-05
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
++ ++GF + K Y PV+++N Q+ +
Sbjct: 31 LLFQTGFDEGELKSYVPVIHANVYQTIKLLH 61
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 52.8 bits (126), Expect = 1e-09
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERE 90
++RIIH F +++RP +YSN I+ + ++ A L I + +N+ +
Sbjct: 52 QMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQ 101
Score = 39.7 bits (92), Expect = 6e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRIL 31
IIH F +++RP +YSN I+ ++
Sbjct: 55 IIHGQDFDQRAREEFRPTIYSNVIKGMRVLV 85
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 48.9 bits (116), Expect = 3e-08
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 39 WLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGLSGLH 98
+++IIHE+G++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 49 VKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFV 108
Query: 99 CGAPW 103
Sbjct: 109 LAGAA 113
Score = 38.2 bits (88), Expect = 2e-04
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQS 26
IIHE+G++ E+ KQY+ VVYSNTIQS
Sbjct: 54 IIHEAGYSEEECKQYKAVVYSNTIQS 79
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB:
2bcj_Q* 2rgn_A* 3ah8_A*
Length = 327
Score = 48.5 bits (115), Expect = 4e-08
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 41 ELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERE 90
++RIIH SG++ ED + + +VY N ++ A++RAM L I + +
Sbjct: 26 QMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNK 75
Score = 40.0 bits (93), Expect = 4e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQS 26
IIH SG++ ED + + +VY N +
Sbjct: 29 IIHGSGYSDEDKRGFTKLVYQNIFTA 54
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 39 WLELRIIHESGFTSEDF---------------KQYRPVVYSNTIQSLVAILRAMPNLSIS 83
++RI+H +GF E + +N +++ I+ AM NL
Sbjct: 57 VKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPP 116
Query: 84 F 84
Sbjct: 117 V 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.36
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 34/100 (34%)
Query: 35 LLSKWLELRI---------------------IHESGFTSEDFKQYRPVVYSNTIQSLVAI 73
LL K+L+ R I + T +++K + I+S + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 74 L-----RAM-PNLSISFSNNERETAG-LSGLHCGAPWFNS 106
L R M LS+ F + LS + WF+
Sbjct: 366 LEPAEYRKMFDRLSV-FPPSAHIPTILLSLI-----WFDV 399
Score = 28.7 bits (63), Expect = 0.39
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 16/66 (24%)
Query: 34 FLLSKWLELRIIHESGF---------TSEDFKQYRPVV------YSNTIQSLVAIL-RAM 77
FL ++LE +I H+S T + K Y+P + Y + +++ L +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 78 PNLSIS 83
NL S
Sbjct: 557 ENLICS 562
Score = 24.8 bits (53), Expect = 7.8
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 2 IHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLE-LRIIHESGFTSEDFK---Q 57
I + T +++K + I+S++ +L K + L + F
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----F-PPSAHIPTI 390
Query: 58 YRPVVYSNTIQSLV-AILRAMPNLSISFSNNERETAGLSGLHC 99
+++ + I+S V ++ + S+ + T + ++
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein,
CBS domain, structural genomics, PSI-2, P structure
initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae
subsp} PDB: 3fna_A*
Length = 149
Score = 26.3 bits (59), Expect = 1.6
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 40 LELRIIHESGFTSEDFKQYRP 60
E R GFT+EDF P
Sbjct: 3 AEAR-----GFTAEDFALSHP 18
Score = 25.1 bits (56), Expect = 4.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 6 GFTSEDFKQYRP 17
GFT+EDF P
Sbjct: 7 GFTAEDFALSHP 18
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 25.4 bits (56), Expect = 5.3
Identities = 1/46 (2%), Positives = 9/46 (19%)
Query: 37 SKWLELRIIHESGFTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSI 82
+ + + N + + + + +
Sbjct: 103 NTTENINDTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAA 148
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 6.3
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 15/40 (37%)
Query: 39 WLELRIIHESGFTSEDFKQYRPVVY------SNTIQSLVA 72
+ ELR ++++ Y +V + T+ L+
Sbjct: 170 FEELRDLYQT---------YHVLVGDLIKFSAETLSELIR 200
>3etn_A Putative phosphosugar isomerase involved in capsu formation;
YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis
nctc 9343}
Length = 220
Score = 24.6 bits (54), Expect = 8.1
Identities = 3/21 (14%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 40 LELRIIHESGFTSEDFKQYRP 60
++ FT E++ +
Sbjct: 191 MKRT-----EFTIEEYSKRHH 206
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 24.8 bits (55), Expect = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 71 VAILRAMPNLS 81
VA LR +PNL
Sbjct: 525 VASLRLIPNLD 535
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 24.6 bits (54), Expect = 8.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 7 FTSEDF-KQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFTSEDFKQYRPVVYSN 65
+TS F Y P V+ N + V + G + + L + +G ED+ + RP+ Y
Sbjct: 29 YTSNKFPTDYIPTVFDNFS-ANVAVDG-----QIVNLGLWDTAG--QEDYSRLRPLSYRG 80
Query: 66 T 66
Sbjct: 81 A 81
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 24.8 bits (55), Expect = 8.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 71 VAILRAMPNLS 81
V LR +PNLS
Sbjct: 480 VPSLRLIPNLS 490
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 24.7 bits (55), Expect = 8.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 71 VAILRAMPNLS 81
VA LR PN+S
Sbjct: 479 VASLRVTPNMS 489
>3fxa_A SIS domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Length = 201
Score = 24.5 bits (54), Expect = 8.8
Identities = 4/21 (19%), Positives = 6/21 (28%), Gaps = 5/21 (23%)
Query: 40 LELRIIHESGFTSEDFKQYRP 60
+ +T E F P
Sbjct: 175 MTYM-----NYTKEQFSVIHP 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,633,417
Number of extensions: 81742
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 30
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)