RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6618
(109 letters)
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 57.6 bits (139), Expect = 9e-13
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 50 FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERET 91
++ ED + + +VY N ++ A++RAM L I + +
Sbjct: 1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKA 42
Score = 38.0 bits (88), Expect = 3e-05
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 7 FTSEDFKQYRPVVYSNTIQSTVRIL 31
++ ED + + +VY N + ++
Sbjct: 1 YSDEDKRGFTKLVYQNIFTAMQAMI 25
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 56.1 bits (135), Expect = 3e-12
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 50 FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAG 93
F +++RP +YSN I+ + ++ A L I + +N+ + G
Sbjct: 1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHG 44
Score = 36.5 bits (84), Expect = 1e-04
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 7 FTSEDFKQYRPVVYSNTIQSTVRIL 31
F +++RP +YSN I+ ++
Sbjct: 1 FDQRAREEFRPTIYSNVIKGMRVLV 25
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 55.3 bits (133), Expect = 8e-12
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 50 FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERE 90
F + ++R ++ N ++ ++ A L I + ++E E
Sbjct: 1 FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENE 41
Score = 36.1 bits (83), Expect = 2e-04
Identities = 3/25 (12%), Positives = 13/25 (52%)
Query: 7 FTSEDFKQYRPVVYSNTIQSTVRIL 31
F + ++R ++ N ++ + ++
Sbjct: 1 FDQKALLEFRDTIFDNILKGSRVLV 25
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 54.5 bits (131), Expect = 1e-11
Identities = 14/41 (34%), Positives = 30/41 (73%)
Query: 50 FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERE 90
++ E+ ++ ++Y NT+QS++AI+RAM L+I + ++ R+
Sbjct: 1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQ 41
Score = 36.8 bits (85), Expect = 7e-05
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 7 FTSEDFKQYRPVVYSNTIQSTVRILG 32
++ E+ ++ ++Y NT+QS + I+
Sbjct: 1 YSLEECLEFIAIIYGNTLQSILAIVR 26
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 54.5 bits (131), Expect = 1e-11
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 50 FTSEDFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERE 90
++ E+ KQY+ VVYSNTIQS++AI+RAM L I F + R
Sbjct: 1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARA 41
Score = 35.7 bits (82), Expect = 2e-04
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 7 FTSEDFKQYRPVVYSNTIQSTVRIL 31
++ E+ KQY+ VVYSNTIQS + I+
Sbjct: 1 YSEEECKQYKAVVYSNTIQSIIAII 25
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 40.6 bits (95), Expect = 3e-06
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 56 KQYRPVVYSNTIQSLVAILRAMPNLS--ISFSNNERE 90
+ +N +++ I+ AM NL + +N E +
Sbjct: 2 ATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQ 38
>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef,
nuclease domain {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 131
Score = 24.9 bits (54), Expect = 1.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 62 VYSNTIQSLVAILRAMPNLSISFSNNERETAGL 94
V+ N I+ +A + + I FS+ ETA
Sbjct: 88 VHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQY 120
>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix
[TaxId: 56636]}
Length = 133
Score = 23.7 bits (51), Expect = 5.0
Identities = 5/41 (12%), Positives = 16/41 (39%)
Query: 54 DFKQYRPVVYSNTIQSLVAILRAMPNLSISFSNNERETAGL 94
R ++ + +A L+ + + + + + TA +
Sbjct: 84 PPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALV 124
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 192
Score = 23.9 bits (50), Expect = 5.1
Identities = 6/58 (10%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 1 IIHESGFTSEDFKQYRPVVYSNTIQSTVRILGTFLLSKWLELRIIHESGFTSEDFKQY 58
++ + E + + T+ + L I+ + T +D +
Sbjct: 131 MVVKGKMKQERDEILSQLAPLGTMFELT----AMIFLDALVAEIMMQKHLTEKDLEAR 184
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G,
CbiG {Sulfolobus solfataricus [TaxId: 2287]}
Length = 207
Score = 23.3 bits (50), Expect = 7.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 12 FKQYRPVVYSNTIQSTVRILGTFLLSKW 39
+K Y +V+ ++ RI+ + SK
Sbjct: 51 WKCYDAIVFVMALEGATRIVCKYAKSKT 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.402
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,199
Number of extensions: 15137
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 18
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)