BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6619
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 66/91 (72%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
+IFFR+ VL LE ERD K++ +I FQA+CRGYLARK AK + Q A++ IQRN +
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
Query: 110 MDVRDWSWWRLYLKINPLLNVHRTDQELQAK 140
+ +R+W WWRL+ K+ PLL V R ++E+QAK
Sbjct: 832 LKLRNWQWWRLFTKVKPLLQVTRQEEEMQAK 862
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 63/91 (69%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
+IFFR+ VL LE ERD K++ +I FQA+CRGYLARK AK + Q ++ CIQ NVR F
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSF 831
Query: 110 MDVRDWSWWRLYLKINPLLNVHRTDQELQAK 140
M+V W W L+ I PLL V R ++E+QAK
Sbjct: 832 MNVXHWPWMXLFFXIXPLLKVTRQEEEMQAK 862
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 62/90 (68%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
+IFFR+ VL LE ERD K++ +I FQA+CRGYLARK AK + Q A++ IQRN +
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
Query: 110 MDVRDWSWWRLYLKINPLLNVHRTDQELQA 139
+ +R+W WWRL+ K+ PLL ++E+ +
Sbjct: 832 LKLRNWQWWRLFTKVKPLLQSAEREKEMAS 861
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 62/90 (68%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
+IFFR+ VL LE ERD K++ +I FQA+CRGYLARK AK + Q A++ IQRN +
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVIQRNCAAY 831
Query: 110 MDVRDWSWWRLYLKINPLLNVHRTDQELQA 139
+ +R+W WWRL+ K+ PLL ++E+ +
Sbjct: 832 LKLRNWQWWRLFTKVKPLLQSAEREKEMAS 861
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 89.0 bits (219), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 57/81 (70%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 818
Query: 110 MDVRDWSWWRLYLKINPLLNV 130
+ +R+W WW+LY K+ PLL++
Sbjct: 819 LVLRNWQWWKLYSKVKPLLSI 839
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 87.8 bits (216), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 56/80 (70%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 761 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 820
Query: 110 MDVRDWSWWRLYLKINPLLN 129
+ +R+W WW+LY K+ PLL+
Sbjct: 821 LVLRNWQWWKLYAKVKPLLS 840
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 87.8 bits (216), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRNVRK+
Sbjct: 761 KVFFKAGVLGMLEDMRDERLSKIISMFQAHIRGYLMRKAYKKLQDQRIGLTLIQRNVRKW 820
Query: 110 MDVRDWSWWRLYLKINPLL 128
+ +R+W WWRL+ K+ PLL
Sbjct: 821 LVLRNWEWWRLFNKVKPLL 839
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 87.4 bits (215), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 55/79 (69%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 818
Query: 110 MDVRDWSWWRLYLKINPLL 128
+ +R+W WW+LY K+ PLL
Sbjct: 819 LVLRNWQWWKLYSKVKPLL 837
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 84.7 bits (208), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 762 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 821
Query: 110 MDVRDWSWWRLYLKINP 126
+ +R+W WW+LY K+ P
Sbjct: 822 LVLRNWQWWKLYAKVKP 838
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 84.3 bits (207), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 755 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 814
Query: 110 MDVRDWSWWRLYLKINP 126
+ +R+W WW+LY K+ P
Sbjct: 815 LVLRNWQWWKLYSKVKP 831
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 84.3 bits (207), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 759 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 818
Query: 110 MDVRDWSWWRLYLKINP 126
+ +R+W WW+LY K+ P
Sbjct: 819 LVLRNWQWWKLYSKVKP 835
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 84.3 bits (207), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 53/77 (68%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK+
Sbjct: 754 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 813
Query: 110 MDVRDWSWWRLYLKINP 126
+ +R+W WW+LY K+ P
Sbjct: 814 LVLRNWQWWKLYSKVKP 830
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 78.6 bits (192), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
++FF++ +L LE RD KL+ + QARCRG+L R ++ + ++ CIQ NVR F
Sbjct: 761 KVFFKAGLLGLLEEMRDDKLAEIITRTQARCRGFLMRVEYRRMVERRESIFCIQYNVRSF 820
Query: 110 MDVRDWSWWRLYLKINPLL 128
M+V+ W W +L+ KI PLL
Sbjct: 821 MNVKHWPWMKLFFKIKPLL 839
>pdb|3PN7|A Chain A, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|D Chain D, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|A Chain A, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|D Chain D, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|A Chain A, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
pdb|3TUY|D Chain D, Phosphorylated Light Chain Domain Of Scallop Smooth Muscle
Myosin
Length = 69
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%)
Query: 61 LEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRL 120
LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK++ +R+W WW+L
Sbjct: 2 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKL 61
Query: 121 YLKINPLL 128
Y K+ PLL
Sbjct: 62 YAKVKPLL 69
>pdb|3JTD|A Chain A, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
pdb|3JVT|A Chain A, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 65
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 65 RDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKI 124
RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK++ +R+W WW+LY K+
Sbjct: 2 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKV 61
Query: 125 NPLL 128
PLL
Sbjct: 62 KPLL 65
>pdb|1WDC|A Chain A, Scallop Myosin Regulatory Domain
Length = 64
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 65 RDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKI 124
RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK++ +R+W WW+LY K+
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKV 60
Query: 125 NPLL 128
PLL
Sbjct: 61 KPLL 64
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
+FF + +L LE RD L+ + QARCRG+L R + + ++ CIQ NVR FM
Sbjct: 765 VFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFM 824
Query: 111 DVRDWSWWRLYLKINPLL 128
+V W W L+ I PLL
Sbjct: 825 NVXHWPWMXLFFXIXPLL 842
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 68.9 bits (167), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
+FF + +L LE RD L+ + QARCRG+L R + + ++ CIQ NVR FM
Sbjct: 762 VFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFM 821
Query: 111 DVRDWSWWRLYLKINPLL 128
+V W W L+ I PLL
Sbjct: 822 NVXHWPWMXLFFXIXPLL 839
>pdb|1SCM|A Chain A, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 60
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 68 KLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPL 127
+LS + FQA RGYL RK KL+ Q + + IQRN+RK++ +R+W WW+LY K+ PL
Sbjct: 1 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPL 60
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 143 QDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPL 175
Q + + IQRN+ K + +R+W WW+LY K+ PL
Sbjct: 28 QRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPL 60
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQ 95
+IFFR+ VL LE ERD K++ +I FQA+CRGYLARK AK + Q
Sbjct: 772 KIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQ 817
>pdb|2BL0|A Chain A, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 63
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 77 QARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLL 128
QA RG++ RKH + + + V+ R IQ N+R +++ ++W+WW+L+ K PLL
Sbjct: 11 QAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLFAKARPLL 62
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 143 QDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLL 176
+ V+ R IQ N+ ++ ++W+WW+L+ K PLL
Sbjct: 29 KSVSARIIQDNIRAYLEFKNWAWWKLFAKARPLL 62
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 33.5 bits (75), Expect = 0.096, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQD 96
+IFFR+ + LE R KL + I Q RG+L RK +++ D
Sbjct: 748 KIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRGD 794
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 50 QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVR 107
+IFFR+ + LE R KL + I Q RG+L RK +++ A IQR VR
Sbjct: 748 KIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR---RAAITIQRYVR 802
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 28.5 bits (62), Expect = 3.6, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 50 QIFFRSSVLPQLEAERDKKL 69
+IFFR+ VL LE ERD K+
Sbjct: 772 KIFFRTGVLAHLEEERDLKI 791
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,471,652
Number of Sequences: 62578
Number of extensions: 181236
Number of successful extensions: 637
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 45
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)