Query psy6619
Match_columns 230
No_of_seqs 240 out of 1339
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:45:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 100.0 1.8E-32 3.9E-37 280.3 17.5 172 2-221 694-876 (1930)
2 COG5022 Myosin heavy chain [Cy 99.9 1.2E-24 2.6E-29 215.6 20.1 164 2-165 662-863 (1463)
3 PTZ00014 myosin-A; Provisional 99.9 7E-22 1.5E-26 193.0 11.0 109 2-113 695-817 (821)
4 KOG0160|consensus 99.8 2.1E-19 4.6E-24 173.9 21.8 153 2-162 599-759 (862)
5 KOG0164|consensus 99.8 3.6E-17 7.7E-22 153.4 17.9 102 3-109 617-731 (1001)
6 KOG0163|consensus 99.6 3.8E-14 8.2E-19 133.8 21.1 135 3-137 698-855 (1259)
7 KOG0162|consensus 99.6 2.1E-15 4.6E-20 141.8 9.1 100 2-103 616-727 (1106)
8 cd01386 MYSc_type_XVIII Myosin 99.3 4E-13 8.8E-18 131.3 2.4 64 2-65 688-767 (767)
9 cd01384 MYSc_type_XI Myosin mo 99.3 8.5E-13 1.8E-17 127.6 3.5 66 2-69 599-674 (674)
10 cd01382 MYSc_type_VI Myosin mo 99.3 1.1E-12 2.4E-17 127.6 3.3 63 2-64 644-715 (717)
11 cd01378 MYSc_type_I Myosin mot 99.3 8.1E-13 1.7E-17 127.9 2.3 64 2-65 599-674 (674)
12 cd01383 MYSc_type_VIII Myosin 99.3 1.7E-12 3.6E-17 125.7 2.6 64 2-65 605-677 (677)
13 cd01377 MYSc_type_II Myosin mo 99.2 2.2E-12 4.7E-17 125.3 2.3 64 2-65 619-693 (693)
14 cd01380 MYSc_type_V Myosin mot 99.2 3.4E-12 7.4E-17 123.9 2.3 64 2-65 618-691 (691)
15 smart00242 MYSc Myosin. Large 99.2 4.5E-12 9.7E-17 123.0 2.3 65 2-66 602-677 (677)
16 cd01381 MYSc_type_VII Myosin m 99.2 6.8E-12 1.5E-16 121.4 2.3 64 2-65 596-671 (671)
17 cd01379 MYSc_type_III Myosin m 99.2 8.2E-12 1.8E-16 120.4 2.3 62 2-65 582-653 (653)
18 cd01387 MYSc_type_XV Myosin mo 99.2 9.7E-12 2.1E-16 120.4 2.8 64 2-65 604-677 (677)
19 cd01385 MYSc_type_IX Myosin mo 99.1 2.5E-11 5.5E-16 117.8 3.3 66 2-67 618-690 (692)
20 cd00124 MYSc Myosin motor doma 99.1 2.6E-11 5.7E-16 117.8 2.2 64 2-65 606-679 (679)
21 KOG0161|consensus 98.5 6.9E-06 1.5E-10 86.6 16.9 40 101-140 804-843 (1930)
22 PF00612 IQ: IQ calmodulin-bin 97.3 0.00046 9.9E-09 36.5 3.5 16 98-113 3-18 (21)
23 KOG0160|consensus 97.2 0.014 3E-07 58.1 15.5 87 46-136 672-759 (862)
24 COG5022 Myosin heavy chain [Cy 97.2 0.0098 2.1E-07 61.4 14.4 107 76-207 728-834 (1463)
25 PF00612 IQ: IQ calmodulin-bin 97.1 0.00099 2.1E-08 35.1 3.4 20 71-90 2-21 (21)
26 smart00015 IQ Short calmodulin 96.5 0.0038 8.3E-08 34.6 3.2 20 70-89 3-22 (26)
27 smart00015 IQ Short calmodulin 95.5 0.021 4.5E-07 31.6 3.1 19 97-115 4-22 (26)
28 KOG2128|consensus 95.1 0.61 1.3E-05 48.6 14.1 139 76-219 541-702 (1401)
29 PTZ00014 myosin-A; Provisional 94.1 0.22 4.7E-06 50.1 8.4 41 97-162 778-818 (821)
30 KOG0520|consensus 92.6 0.32 7E-06 49.0 6.7 43 70-115 810-852 (975)
31 PF00063 Myosin_head: Myosin h 92.3 0.038 8.1E-07 54.3 -0.2 43 2-44 623-672 (689)
32 KOG0163|consensus 89.5 25 0.00054 35.3 17.1 25 69-93 812-836 (1259)
33 KOG2128|consensus 86.0 11 0.00023 39.9 11.6 45 71-115 593-641 (1401)
34 cd00632 Prefoldin_beta Prefold 84.9 6.1 0.00013 29.2 7.3 55 167-221 47-101 (105)
35 PF08826 DMPK_coil: DMPK coile 81.9 11 0.00023 25.4 6.7 41 182-222 17-57 (61)
36 KOG4229|consensus 80.9 3 6.6E-05 43.0 5.5 106 3-113 847-957 (1062)
37 TIGR02338 gimC_beta prefoldin, 79.2 14 0.0003 27.6 7.4 55 167-221 51-105 (110)
38 PRK09343 prefoldin subunit bet 77.0 14 0.00031 28.1 7.0 55 166-220 54-108 (121)
39 PF07106 TBPIP: Tat binding pr 75.9 6.6 0.00014 31.5 5.2 44 181-224 70-113 (169)
40 PRK10884 SH3 domain-containing 73.6 14 0.00031 30.9 6.7 46 181-226 130-175 (206)
41 PF14193 DUF4315: Domain of un 71.8 15 0.00032 26.3 5.5 34 185-218 3-36 (83)
42 PF01920 Prefoldin_2: Prefoldi 70.4 18 0.0004 26.1 6.1 47 176-222 55-101 (106)
43 PF04111 APG6: Autophagy prote 68.1 20 0.00044 31.9 6.9 41 181-221 48-88 (314)
44 KOG0520|consensus 67.6 17 0.00037 37.2 6.8 88 71-164 834-934 (975)
45 COG1382 GimC Prefoldin, chaper 65.6 37 0.00081 26.0 6.9 55 167-221 54-108 (119)
46 PF05529 Bap31: B-cell recepto 65.3 16 0.00035 29.9 5.4 38 182-219 153-190 (192)
47 TIGR02894 DNA_bind_RsfA transc 64.9 30 0.00065 27.9 6.5 37 183-219 104-140 (161)
48 PF08826 DMPK_coil: DMPK coile 64.5 39 0.00085 22.7 6.1 35 187-221 15-49 (61)
49 PF12325 TMF_TATA_bd: TATA ele 64.3 33 0.00072 26.2 6.5 39 182-220 22-60 (120)
50 PF04380 BMFP: Membrane fusoge 63.8 16 0.00035 25.7 4.3 30 181-210 48-77 (79)
51 PF04977 DivIC: Septum formati 61.6 33 0.00071 23.3 5.7 33 184-216 18-50 (80)
52 KOG4603|consensus 61.5 33 0.00072 28.0 6.2 43 180-222 76-118 (201)
53 PRK13729 conjugal transfer pil 61.2 23 0.0005 33.5 6.0 36 185-220 78-120 (475)
54 COG3074 Uncharacterized protei 59.7 45 0.00097 23.1 5.7 38 184-221 26-63 (79)
55 PHA01750 hypothetical protein 59.6 27 0.00058 23.8 4.5 53 164-220 20-72 (75)
56 KOG1962|consensus 59.1 1.1E+02 0.0024 25.9 9.3 38 182-219 150-187 (216)
57 PF12718 Tropomyosin_1: Tropom 58.8 47 0.001 26.1 6.7 41 182-222 27-67 (143)
58 COG4026 Uncharacterized protei 57.2 1.2E+02 0.0027 25.9 10.4 21 68-88 70-90 (290)
59 PRK15422 septal ring assembly 57.0 49 0.0011 23.4 5.7 37 184-220 26-62 (79)
60 PF09340 NuA4: Histone acetylt 56.2 22 0.00047 25.2 3.9 26 198-223 3-28 (80)
61 TIGR02894 DNA_bind_RsfA transc 56.0 45 0.00097 26.9 6.1 33 184-216 112-144 (161)
62 KOG4427|consensus 56.0 35 0.00075 34.3 6.4 22 69-90 29-50 (1096)
63 PF04420 CHD5: CHD5-like prote 55.6 39 0.00085 27.0 5.9 22 179-200 36-57 (161)
64 KOG0164|consensus 54.6 55 0.0012 32.7 7.5 57 97-163 697-753 (1001)
65 PF11079 YqhG: Bacterial prote 54.0 58 0.0013 28.3 6.9 63 143-220 181-243 (260)
66 PF00170 bZIP_1: bZIP transcri 53.9 62 0.0013 21.4 6.5 37 183-219 26-62 (64)
67 PF11500 Cut12: Spindle pole b 50.1 63 0.0014 25.8 6.0 39 185-223 100-138 (152)
68 PF13094 CENP-Q: CENP-Q, a CEN 49.5 82 0.0018 24.9 6.8 41 183-223 41-81 (160)
69 PF14193 DUF4315: Domain of un 49.5 57 0.0012 23.3 5.2 30 182-211 7-36 (83)
70 PF05377 FlaC_arch: Flagella a 49.0 75 0.0016 20.9 6.0 36 182-217 6-41 (55)
71 PF12777 MT: Microtubule-bindi 48.7 41 0.00088 30.3 5.5 55 166-220 210-272 (344)
72 PRK13729 conjugal transfer pil 48.5 48 0.001 31.4 6.0 20 194-213 101-120 (475)
73 PF07334 IFP_35_N: Interferon- 48.1 47 0.001 23.4 4.5 26 185-210 2-27 (76)
74 PF05278 PEARLI-4: Arabidopsis 47.8 76 0.0017 27.8 6.7 37 182-218 213-249 (269)
75 PRK11637 AmiB activator; Provi 47.3 69 0.0015 29.6 6.9 38 183-220 89-126 (428)
76 PRK01203 prefoldin subunit alp 47.2 45 0.00098 25.9 4.7 48 181-228 5-54 (130)
77 PF11471 Sugarporin_N: Maltopo 46.3 50 0.0011 22.0 4.3 24 182-205 31-54 (60)
78 PF11853 DUF3373: Protein of u 46.0 21 0.00046 33.8 3.3 37 185-222 27-63 (489)
79 PF12958 DUF3847: Protein of u 45.8 90 0.0019 22.5 5.8 33 185-217 3-35 (86)
80 PRK00888 ftsB cell division pr 45.6 68 0.0015 23.8 5.4 40 185-225 36-75 (105)
81 TIGR02449 conserved hypothetic 44.7 99 0.0021 21.0 6.1 37 185-221 16-52 (65)
82 PRK11637 AmiB activator; Provi 44.1 83 0.0018 29.1 6.9 42 182-223 81-122 (428)
83 PF06005 DUF904: Protein of un 43.8 1.1E+02 0.0023 21.2 5.9 33 188-220 37-69 (72)
84 PF05377 FlaC_arch: Flagella a 43.5 94 0.002 20.4 6.0 36 185-220 2-37 (55)
85 PF01166 TSC22: TSC-22/dip/bun 43.3 50 0.0011 22.0 3.8 30 190-219 14-43 (59)
86 PF08182 Pedibin: Pedibin/Hym- 43.3 58 0.0013 19.2 3.6 30 188-217 2-31 (35)
87 PF11471 Sugarporin_N: Maltopo 42.8 53 0.0011 21.9 3.9 30 187-216 29-58 (60)
88 KOG0942|consensus 42.5 31 0.00067 35.1 3.9 23 69-91 28-50 (1001)
89 PF07795 DUF1635: Protein of u 42.2 80 0.0017 26.7 5.8 38 180-217 23-60 (214)
90 COG3883 Uncharacterized protei 42.1 98 0.0021 27.0 6.5 32 185-216 68-99 (265)
91 smart00338 BRLZ basic region l 42.1 1E+02 0.0022 20.4 6.0 34 185-218 28-61 (65)
92 cd00632 Prefoldin_beta Prefold 41.9 99 0.0022 22.6 5.8 35 182-216 69-103 (105)
93 PF12329 TMF_DNA_bd: TATA elem 41.4 1.2E+02 0.0026 21.0 6.3 7 210-216 60-66 (74)
94 PF13815 Dzip-like_N: Iguana/D 39.9 1.3E+02 0.0028 22.6 6.2 36 184-219 81-116 (118)
95 PF12718 Tropomyosin_1: Tropom 39.5 1.4E+02 0.003 23.4 6.6 11 187-197 53-63 (143)
96 KOG4427|consensus 39.1 66 0.0014 32.4 5.5 20 96-115 30-49 (1096)
97 TIGR02338 gimC_beta prefoldin, 39.1 1.1E+02 0.0025 22.5 5.8 34 183-216 74-107 (110)
98 PF15290 Syntaphilin: Golgi-lo 38.9 2.5E+02 0.0054 24.9 8.4 29 181-209 80-108 (305)
99 cd04776 HTH_GnyR Helix-Turn-He 38.9 1.3E+02 0.0029 22.5 6.2 35 185-219 82-116 (118)
100 PF04568 IATP: Mitochondrial A 38.6 90 0.002 23.1 5.0 29 185-213 66-99 (100)
101 cd00890 Prefoldin Prefoldin is 38.5 1.6E+02 0.0035 21.8 6.7 42 180-221 84-125 (129)
102 PF04859 DUF641: Plant protein 38.4 53 0.0011 25.6 3.9 29 182-210 100-128 (131)
103 COG3883 Uncharacterized protei 38.2 1.1E+02 0.0025 26.6 6.3 40 185-224 61-100 (265)
104 PF08317 Spc7: Spc7 kinetochor 37.9 1.1E+02 0.0024 27.2 6.5 10 12-21 13-22 (325)
105 PF10211 Ax_dynein_light: Axon 37.8 2.3E+02 0.0049 23.2 8.0 31 186-216 123-153 (189)
106 TIGR02209 ftsL_broad cell divi 37.5 1.4E+02 0.003 20.6 5.9 28 187-214 28-55 (85)
107 PF04111 APG6: Autophagy prote 37.2 1.2E+02 0.0026 27.0 6.6 11 190-200 64-74 (314)
108 TIGR00219 mreC rod shape-deter 37.2 1.1E+02 0.0024 26.8 6.2 41 184-224 67-111 (283)
109 PF13600 DUF4140: N-terminal d 37.2 1E+02 0.0022 22.3 5.2 32 182-213 69-100 (104)
110 PF05278 PEARLI-4: Arabidopsis 37.1 1.3E+02 0.0028 26.4 6.4 40 181-220 219-258 (269)
111 PRK10636 putative ABC transpor 37.0 82 0.0018 30.8 5.9 34 184-217 599-632 (638)
112 COG1422 Predicted membrane pro 36.9 1.5E+02 0.0032 24.8 6.5 20 183-202 72-91 (201)
113 PF08172 CASP_C: CASP C termin 36.6 1.2E+02 0.0026 26.2 6.2 38 183-220 93-130 (248)
114 PF10805 DUF2730: Protein of u 36.3 1.2E+02 0.0027 22.4 5.5 34 180-213 62-95 (106)
115 PF08763 Ca_chan_IQ: Voltage g 36.1 51 0.0011 19.6 2.7 16 98-113 11-26 (35)
116 PF12999 PRKCSH-like: Glucosid 36.1 1.9E+02 0.004 23.7 6.9 26 198-223 147-172 (176)
117 TIGR02680 conserved hypothetic 35.8 5E+02 0.011 28.1 11.9 82 135-218 237-318 (1353)
118 PF13600 DUF4140: N-terminal d 35.7 96 0.0021 22.4 4.9 37 185-221 65-101 (104)
119 COG4026 Uncharacterized protei 35.7 1.4E+02 0.0031 25.5 6.3 35 185-219 158-192 (290)
120 PF00170 bZIP_1: bZIP transcri 35.7 1.3E+02 0.0028 19.8 6.1 31 182-212 32-62 (64)
121 KOG4253|consensus 35.6 1.9E+02 0.004 23.4 6.6 38 185-222 46-88 (175)
122 PF04859 DUF641: Plant protein 34.5 1.3E+02 0.0027 23.5 5.5 38 182-219 93-130 (131)
123 PRK14127 cell division protein 34.5 1.6E+02 0.0034 22.2 5.8 28 186-213 40-67 (109)
124 PRK11677 hypothetical protein; 34.4 2.2E+02 0.0048 22.2 6.8 39 183-221 29-67 (134)
125 PRK00888 ftsB cell division pr 34.4 1.7E+02 0.0036 21.7 5.9 35 184-218 28-62 (105)
126 COG4942 Membrane-bound metallo 34.2 1.2E+02 0.0027 28.2 6.2 39 182-220 72-110 (420)
127 PF12777 MT: Microtubule-bindi 34.1 1.5E+02 0.0032 26.6 6.8 42 181-222 240-281 (344)
128 COG2433 Uncharacterized conser 34.0 1.4E+02 0.0031 29.2 6.7 36 185-220 431-466 (652)
129 PRK14127 cell division protein 33.6 90 0.002 23.5 4.4 33 187-219 34-66 (109)
130 PF12808 Mto2_bdg: Micro-tubul 33.5 76 0.0017 20.6 3.4 29 176-204 22-50 (52)
131 PF11544 Spc42p: Spindle pole 33.3 1.7E+02 0.0037 20.5 7.0 41 185-225 14-54 (76)
132 COG4942 Membrane-bound metallo 33.3 1.5E+02 0.0033 27.7 6.6 39 182-220 65-103 (420)
133 PF10498 IFT57: Intra-flagella 33.3 3.8E+02 0.0082 24.5 11.9 52 116-167 194-252 (359)
134 PF02994 Transposase_22: L1 tr 33.2 1.7E+02 0.0036 26.8 6.9 38 185-222 146-183 (370)
135 PF01920 Prefoldin_2: Prefoldi 33.0 96 0.0021 22.2 4.5 32 183-214 69-100 (106)
136 smart00338 BRLZ basic region l 32.6 1.5E+02 0.0032 19.5 5.9 32 182-213 32-63 (65)
137 COG1579 Zn-ribbon protein, pos 32.6 1.8E+02 0.0038 25.1 6.5 42 181-222 101-142 (239)
138 PRK10722 hypothetical protein; 32.6 1E+02 0.0022 26.6 5.0 29 189-217 175-203 (247)
139 PHA01750 hypothetical protein 32.4 1.6E+02 0.0035 20.1 5.0 33 182-214 41-73 (75)
140 COG5509 Uncharacterized small 32.4 1.5E+02 0.0033 19.9 4.7 31 183-213 25-55 (65)
141 PF04201 TPD52: Tumour protein 32.4 1.2E+02 0.0025 24.6 5.1 29 184-212 37-65 (162)
142 PF06156 DUF972: Protein of un 32.4 2.1E+02 0.0046 21.3 6.4 18 185-202 17-34 (107)
143 KOG0377|consensus 32.3 96 0.0021 29.3 5.1 25 64-88 11-35 (631)
144 PF04977 DivIC: Septum formati 32.2 1.2E+02 0.0027 20.3 4.8 43 181-224 22-64 (80)
145 PF11932 DUF3450: Protein of u 31.6 2E+02 0.0044 24.4 6.9 42 181-222 75-116 (251)
146 PF11853 DUF3373: Protein of u 31.4 48 0.001 31.5 3.2 35 187-222 22-56 (489)
147 PF08614 ATG16: Autophagy prot 31.4 2.2E+02 0.0049 23.2 6.9 36 185-220 146-181 (194)
148 KOG3501|consensus 31.3 2.2E+02 0.0048 21.3 6.0 35 182-216 73-107 (114)
149 PRK10884 SH3 domain-containing 30.9 2.1E+02 0.0046 23.9 6.7 41 182-222 124-164 (206)
150 PF14257 DUF4349: Domain of un 30.6 3.4E+02 0.0073 23.1 8.6 38 176-213 155-192 (262)
151 PF05667 DUF812: Protein of un 30.5 1.7E+02 0.0038 28.6 6.9 18 4-21 75-92 (594)
152 PF11932 DUF3450: Protein of u 30.4 2E+02 0.0044 24.4 6.7 32 185-216 65-96 (251)
153 PF02388 FemAB: FemAB family; 30.4 1.9E+02 0.0041 26.6 6.9 43 180-222 239-291 (406)
154 PF11221 Med21: Subunit 21 of 30.2 2.1E+02 0.0045 22.3 6.2 39 182-220 103-141 (144)
155 TIGR01554 major_cap_HK97 phage 29.7 3.9E+02 0.0085 24.0 8.8 38 181-218 25-62 (378)
156 PF13094 CENP-Q: CENP-Q, a CEN 29.7 2.6E+02 0.0056 22.0 6.8 31 186-216 51-81 (160)
157 PF02996 Prefoldin: Prefoldin 29.4 2.3E+02 0.0049 20.8 6.1 42 180-221 74-115 (120)
158 PF07407 Seadorna_VP6: Seadorn 29.3 1.4E+02 0.0031 27.0 5.5 31 184-214 33-63 (420)
159 PF10458 Val_tRNA-synt_C: Valy 28.8 1.1E+02 0.0024 20.4 3.8 18 183-200 4-21 (66)
160 PRK13182 racA polar chromosome 28.3 3.3E+02 0.0071 22.2 7.2 11 212-222 133-143 (175)
161 PRK09039 hypothetical protein; 28.1 1.9E+02 0.004 26.1 6.3 32 186-217 147-178 (343)
162 KOG1962|consensus 28.0 1.3E+02 0.0028 25.5 4.9 37 180-216 155-191 (216)
163 PRK13922 rod shape-determining 27.9 1.9E+02 0.0042 24.8 6.2 34 182-219 75-108 (276)
164 PF15030 DUF4527: Protein of u 27.7 3.8E+02 0.0082 23.3 7.6 38 190-227 58-95 (277)
165 COG1730 GIM5 Predicted prefold 27.6 2.1E+02 0.0045 22.7 5.7 47 182-228 12-61 (145)
166 KOG3856|consensus 27.5 1.5E+02 0.0033 22.8 4.7 29 193-221 13-41 (135)
167 PF02403 Seryl_tRNA_N: Seryl-t 27.0 2E+02 0.0043 20.9 5.3 33 184-216 68-100 (108)
168 PF06657 Cep57_MT_bd: Centroso 26.9 2.3E+02 0.0049 19.9 6.1 20 185-204 19-38 (79)
169 KOG0942|consensus 26.7 85 0.0019 32.1 4.1 33 82-114 15-47 (1001)
170 PF04380 BMFP: Membrane fusoge 26.7 2.3E+02 0.0049 19.8 7.0 31 189-219 49-79 (79)
171 PRK11546 zraP zinc resistance 26.5 3.2E+02 0.007 21.5 7.6 32 172-203 77-109 (143)
172 COG2919 Septum formation initi 26.4 1.9E+02 0.004 21.8 5.1 35 185-219 52-86 (117)
173 cd00584 Prefoldin_alpha Prefol 26.4 2.8E+02 0.0061 20.7 6.7 42 180-221 84-125 (129)
174 KOG4797|consensus 26.3 2.2E+02 0.0047 21.5 5.2 28 189-216 66-93 (123)
175 PF07106 TBPIP: Tat binding pr 26.3 1.6E+02 0.0034 23.4 5.0 29 181-209 77-105 (169)
176 PF15294 Leu_zip: Leucine zipp 26.3 2.5E+02 0.0054 24.8 6.5 36 183-218 132-174 (278)
177 PF07820 TraC: TraC-like prote 26.2 1.3E+02 0.0029 21.9 4.0 23 185-207 4-26 (92)
178 PF06295 DUF1043: Protein of u 26.1 3E+02 0.0065 21.0 6.5 25 185-209 27-51 (128)
179 PF13817 DDE_Tnp_IS66_C: IS66 26.1 28 0.00062 21.1 0.5 7 224-230 33-39 (39)
180 COG1730 GIM5 Predicted prefold 26.1 3.2E+02 0.007 21.6 6.6 41 180-220 91-131 (145)
181 PF09577 Spore_YpjB: Sporulati 26.1 4.2E+02 0.0091 22.7 10.9 64 165-228 129-198 (232)
182 PF07407 Seadorna_VP6: Seadorn 26.0 1.9E+02 0.0042 26.1 5.8 36 182-217 38-75 (420)
183 PF04102 SlyX: SlyX; InterPro 25.9 2.2E+02 0.0047 19.3 6.3 35 187-221 15-49 (69)
184 COG2433 Uncharacterized conser 25.7 1.8E+02 0.004 28.5 6.0 39 180-218 471-509 (652)
185 PF07716 bZIP_2: Basic region 25.7 1.8E+02 0.004 18.4 5.8 20 197-216 32-51 (54)
186 PF10779 XhlA: Haemolysin XhlA 25.6 2.2E+02 0.0047 19.3 6.6 37 182-218 12-48 (71)
187 PRK09039 hypothetical protein; 25.5 2.3E+02 0.0051 25.5 6.5 23 187-209 155-177 (343)
188 PF03962 Mnd1: Mnd1 family; I 25.4 2.4E+02 0.0052 23.1 6.0 22 182-203 75-96 (188)
189 KOG4010|consensus 25.1 1.8E+02 0.004 24.1 5.1 29 184-212 52-80 (208)
190 PF04012 PspA_IM30: PspA/IM30 25.0 3.3E+02 0.0071 22.5 6.9 42 182-223 29-70 (221)
191 PF13815 Dzip-like_N: Iguana/D 24.8 2.8E+02 0.0061 20.7 5.9 27 183-209 87-113 (118)
192 COG2960 Uncharacterized protei 24.6 2.2E+02 0.0048 21.1 5.0 31 184-214 60-90 (103)
193 PF14645 Chibby: Chibby family 24.6 3E+02 0.0065 20.8 5.9 40 181-220 76-115 (116)
194 PRK14011 prefoldin subunit alp 24.5 1.4E+02 0.0031 23.5 4.3 45 184-228 11-55 (144)
195 PRK05771 V-type ATP synthase s 24.4 1.7E+02 0.0036 28.7 5.7 36 186-221 89-124 (646)
196 KOG0377|consensus 24.3 2E+02 0.0043 27.3 5.7 29 96-124 17-48 (631)
197 PF06102 DUF947: Domain of unk 24.1 2.5E+02 0.0054 22.6 5.8 39 186-224 59-99 (168)
198 KOG0250|consensus 24.1 2.4E+02 0.0051 29.6 6.7 46 175-220 653-698 (1074)
199 TIGR00293 prefoldin, archaeal 24.0 3.1E+02 0.0067 20.4 6.5 42 180-221 83-124 (126)
200 PF14073 Cep57_CLD: Centrosome 24.0 3.3E+02 0.0071 22.4 6.4 37 185-221 115-151 (178)
201 PF02994 Transposase_22: L1 tr 23.8 2.7E+02 0.0058 25.4 6.6 41 180-220 148-188 (370)
202 PF05667 DUF812: Protein of un 23.7 2.8E+02 0.006 27.2 6.9 40 182-221 327-366 (594)
203 PF13747 DUF4164: Domain of un 23.6 2.8E+02 0.0061 19.8 6.2 40 181-220 37-76 (89)
204 smart00787 Spc7 Spc7 kinetocho 23.5 2.7E+02 0.0059 24.8 6.4 42 183-224 225-266 (312)
205 COG5185 HEC1 Protein involved 23.3 6.7E+02 0.015 24.1 10.6 18 183-200 337-354 (622)
206 PF00038 Filament: Intermediat 23.3 2.9E+02 0.0063 24.0 6.6 40 182-221 95-134 (312)
207 PRK15422 septal ring assembly 23.3 2.8E+02 0.006 19.6 6.3 35 185-219 6-40 (79)
208 PF11559 ADIP: Afadin- and alp 23.3 3.3E+02 0.0072 21.0 6.3 25 186-210 83-107 (151)
209 PF06005 DUF904: Protein of un 23.1 2.6E+02 0.0056 19.3 6.9 40 181-220 16-55 (72)
210 PF08781 DP: Transcription fac 23.1 3.3E+02 0.0071 21.5 6.0 31 184-214 2-32 (142)
211 COG0216 PrfA Protein chain rel 23.0 2.9E+02 0.0063 25.2 6.3 44 183-228 53-105 (363)
212 PF13863 DUF4200: Domain of un 22.9 2.8E+02 0.0062 20.5 5.7 33 184-216 75-107 (126)
213 PF02403 Seryl_tRNA_N: Seryl-t 22.9 1.4E+02 0.003 21.8 3.8 39 190-228 67-105 (108)
214 PF15188 CCDC-167: Coiled-coil 22.9 2.1E+02 0.0045 20.5 4.5 33 180-212 33-65 (85)
215 PF10211 Ax_dynein_light: Axon 22.9 4.3E+02 0.0092 21.6 11.2 29 56-84 55-85 (189)
216 PF10883 DUF2681: Protein of u 22.8 3E+02 0.0065 19.8 6.3 31 181-211 28-58 (87)
217 KOG4797|consensus 22.3 2.8E+02 0.006 20.9 5.1 24 183-206 67-90 (123)
218 PF04201 TPD52: Tumour protein 22.3 3.8E+02 0.0083 21.6 6.4 42 179-220 25-66 (162)
219 PF12644 DUF3782: Protein of u 22.3 2.3E+02 0.0051 18.4 4.8 19 185-203 3-21 (64)
220 PRK09343 prefoldin subunit bet 22.1 3.1E+02 0.0068 20.7 5.7 38 182-219 77-114 (121)
221 PF10205 KLRAQ: Predicted coil 22.0 3.4E+02 0.0073 20.2 5.9 33 182-214 39-71 (102)
222 PRK03947 prefoldin subunit alp 22.0 3.6E+02 0.0079 20.5 6.7 40 181-220 92-131 (140)
223 COG3074 Uncharacterized protei 22.0 2.8E+02 0.0061 19.2 6.3 31 186-216 7-37 (79)
224 PRK06342 transcription elongat 21.9 3.7E+02 0.008 21.5 6.3 43 180-222 31-82 (160)
225 PF06936 Selenoprotein_S: Sele 21.8 4.6E+02 0.01 21.7 8.7 9 114-122 35-43 (190)
226 PF14389 Lzipper-MIP1: Leucine 21.8 2.2E+02 0.0048 20.3 4.5 27 185-211 10-36 (88)
227 PF12325 TMF_TATA_bd: TATA ele 21.6 3.4E+02 0.0073 20.7 5.7 37 183-219 68-104 (120)
228 PF11829 DUF3349: Protein of u 21.6 42 0.0009 24.7 0.7 16 6-21 13-28 (96)
229 PF00038 Filament: Intermediat 21.4 2.9E+02 0.0063 24.0 6.2 42 181-222 207-248 (312)
230 PF08946 Osmo_CC: Osmosensory 21.4 2.3E+02 0.0049 17.9 4.1 14 204-217 26-39 (46)
231 KOG4001|consensus 21.3 2.5E+02 0.0054 23.7 5.2 10 191-200 207-216 (259)
232 PTZ00420 coronin; Provisional 21.3 1.1E+02 0.0025 29.6 3.7 51 167-217 396-447 (568)
233 TIGR03185 DNA_S_dndD DNA sulfu 21.2 3.3E+02 0.0072 26.7 7.1 34 183-216 421-454 (650)
234 KOG0162|consensus 21.1 1E+02 0.0022 31.1 3.3 22 98-119 698-719 (1106)
235 PF15361 RIC3: Resistance to i 21.0 1.3E+02 0.0028 23.9 3.5 21 187-207 128-148 (152)
236 cd04776 HTH_GnyR Helix-Turn-He 20.9 3.6E+02 0.0079 20.1 6.1 37 185-221 75-111 (118)
237 KOG3478|consensus 20.6 3.9E+02 0.0084 20.3 6.4 28 190-217 76-103 (120)
238 PF10146 zf-C4H2: Zinc finger- 20.4 4.6E+02 0.01 22.3 6.9 30 184-213 54-83 (230)
239 KOG3859|consensus 20.4 3.5E+02 0.0076 24.3 6.2 40 181-220 353-393 (406)
240 TIGR02977 phageshock_pspA phag 20.4 3.7E+02 0.008 22.4 6.3 23 185-207 115-137 (219)
241 PRK05771 V-type ATP synthase s 20.0 3.7E+02 0.008 26.3 7.1 37 179-215 211-247 (646)
No 1
>KOG0161|consensus
Probab=100.00 E-value=1.8e-32 Score=280.27 Aligned_cols=172 Identities=33% Similarity=0.538 Sum_probs=148.2
Q ss_pred ccccccccccccchHHHHhhhC-----------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS-----------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS 70 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~-----------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~ 70 (230)
|||.|.|||+|++|.+|.+||. .++..+|..++..+..+.+-|.+|.||||||+||++.||++||..++
T Consensus 694 IRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls 773 (1930)
T KOG0161|consen 694 IRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLS 773 (1930)
T ss_pred HHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHH
Confidence 7999999999999999999953 12344555666666666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHH
Q psy6619 71 SRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRI 150 (230)
Q Consensus 71 ~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~I 150 (230)
.+++.+|+.||||++|+.|.+...+.. |+.+|
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~------------------------------------------------ai~~i 805 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLD------------------------------------------------AIKVI 805 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------HHHHH
Confidence 999999999999999999877664444 45555
Q ss_pred HhhhHHHHHHhchHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 151 QRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 151 Q~~~R~~l~~r~w~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
|+|+|.|+.+++||||+||.+|||||++++.++++.++++++..+++++++.+..++++|.++..++.+..
T Consensus 806 Q~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~ 876 (1930)
T KOG0161|consen 806 QRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKN 876 (1930)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666778889999999999999999999999999999999999999999999999998888876654
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.93 E-value=1.2e-24 Score=215.57 Aligned_cols=164 Identities=22% Similarity=0.246 Sum_probs=129.3
Q ss_pred ccccccccccccchHHHHhhh---CCC------------CccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SAS------------PQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERD 66 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~~------------~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~ 66 (230)
|||+|||||+|++|++|++|| .+. ...+|..++....++...||+|.||||||+|+|+.||++|+
T Consensus 662 IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd 741 (1463)
T COG5022 662 IRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRD 741 (1463)
T ss_pred eeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHH
Confidence 799999999999999999993 221 12344556666666777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHH------
Q psy6619 67 KKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAK------ 140 (230)
Q Consensus 67 ~~l~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~------ 140 (230)
..++.+++.||+.|||++.|++|........++..+|.+++.+..+..++||+++.+++|++.....+.++.++
T Consensus 742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~ 821 (1463)
T COG5022 742 AKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIK 821 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999888766677788888877776666799999999999999866555443311
Q ss_pred -----------------HHHHHHHHHHHhhhHHHHHHhchHH
Q psy6619 141 -----------------SVQDVAVRRIQRNVPKLMDVRDWSW 165 (230)
Q Consensus 141 -----------------~~~~~a~~~IQ~~~R~~l~~r~w~w 165 (230)
.-...+...+|+.+|.+...+++.-
T Consensus 822 lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~ 863 (1463)
T COG5022 822 LQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSL 863 (1463)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1123356666777776666665543
No 3
>PTZ00014 myosin-A; Provisional
Probab=99.86 E-value=7e-22 Score=193.03 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=97.0
Q ss_pred ccccccccccccchHHHHhhhC-----------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS-----------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS 70 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~-----------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~ 70 (230)
+||+|+|||+|++|++|+.||. .+++..|..++..++++.++|++|+||||||+|+++.||+.++..+.
T Consensus 695 iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~ 774 (821)
T PTZ00014 695 LQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLA 774 (821)
T ss_pred HHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHH
Confidence 6899999999999999999941 13455677888888888899999999999999999999999888764
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHh
Q psy6619 71 ---SRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVR 113 (230)
Q Consensus 71 ---~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr 113 (230)
.+++.||++||||++|++|.+++ .|+++||+++|+|+.++
T Consensus 775 ~~~~~~~~iq~~~r~~~~r~~~~~~~---~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 775 AWEPLVSVLEALILKIKKKRKVRKNI---KSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 68899999999999999999886 69999999999999876
No 4
>KOG0160|consensus
Probab=99.84 E-value=2.1e-19 Score=173.86 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=121.5
Q ss_pred ccccccccccccchHHHHhhhC---C-----CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---A-----SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSRV 73 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~-----~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~~~ 73 (230)
+||+++|||+|++|+||+.||. + ++...|..+++.++.. .||+|+|||||++|+++.||..|...+...+
T Consensus 599 iRiS~~g~P~r~~~~Ef~~r~~~L~~~~~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~ 676 (862)
T KOG0160|consen 599 IRISCAGFPTRWTFIEFVNRYGILMPNDSASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAK 676 (862)
T ss_pred heeccccCCccccHHHHHHHHhhcCcchhcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHH
Confidence 7999999999999999999942 2 2344556777777766 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhh
Q psy6619 74 IEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRN 153 (230)
Q Consensus 74 ~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~ 153 (230)
+.||..+|||+.|+.|..++ .+++.||..+||+++|+....-.-...+++.++....++ .+.....++..+|+.
T Consensus 677 ~~iq~~~r~~~~r~~f~~~r---~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~---~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 677 VLIQRQIRGYLARKKFLQLR---SAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRR---RYRALIPASITIQSG 750 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 99999999999999999888 799999999999999972221111223333333333333 344557789999999
Q ss_pred hHHHHHHhc
Q psy6619 154 VPKLMDVRD 162 (230)
Q Consensus 154 ~R~~l~~r~ 162 (230)
+|+++.+..
T Consensus 751 ~r~~~~r~e 759 (862)
T KOG0160|consen 751 VRAMLARNE 759 (862)
T ss_pred HHHHHhccc
Confidence 999998874
No 5
>KOG0164|consensus
Probab=99.76 E-value=3.6e-17 Score=153.36 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=88.4
Q ss_pred cccccccccccchHHHHhhhC------------CCCccchHHHHhHhccccccccCCcceeeecc-CchHHHHHHHHHHH
Q psy6619 3 EIVKEALSNAVISTQIVKKLS------------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRS-SVLPQLEAERDKKL 69 (230)
Q Consensus 3 rI~raGyP~R~~~~~F~~R~~------------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~-g~l~~LE~~R~~~l 69 (230)
|++||||.+|.+|+.|+.||. ++.++.+..+++.|++. +++.+|+||||+|+ -++-.||+.|...+
T Consensus 617 rVrrAgfahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l 695 (1001)
T KOG0164|consen 617 RVRRAGFAHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERL 695 (1001)
T ss_pred hhhhcccccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHH
Confidence 789999999999999999941 23355667788888876 88999999999995 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy6619 70 SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109 (230)
Q Consensus 70 ~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~ 109 (230)
-.+++.||++|||+++|.+|++|+ .++++|+ ++|.|
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~ 731 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRY 731 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHH
Confidence 999999999999999999999999 5677776 56544
No 6
>KOG0163|consensus
Probab=99.64 E-value=3.8e-14 Score=133.85 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=98.8
Q ss_pred cccccccccccchHHHHhhhC---------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHH---HHHH
Q psy6619 3 EIVKEALSNAVISTQIVKKLS---------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERD---KKLS 70 (230)
Q Consensus 3 rI~raGyP~R~~~~~F~~R~~---------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~---~~l~ 70 (230)
+++..|||+|.+|.|.+..|. -+|+..|.+++..++++.++|++|.|||||++|-.+.++++-. +.+.
T Consensus 698 ~LMq~GyPSR~~F~dLYamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~ 777 (1259)
T KOG0163|consen 698 ELMQHGYPSRTSFADLYAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETML 777 (1259)
T ss_pred HHHhcCCCccccHHHHHHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHH
Confidence 567889999999999999842 2677889999999999999999999999999999999998643 3333
Q ss_pred HHHHHHHHHHH---------HHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHhhhhHhhhhhHHH
Q psy6619 71 SRVIEFQARCR---------GYLARKHL-AKLKVQDVAVRCIQRNVRKFMDVRD-WSWWRLYLKINPLLNVHRTDQEL 137 (230)
Q Consensus 71 ~~~~~iQ~~~R---------g~l~r~~~-~~~~~~~~A~~~IQ~~~R~~~~rr~-~~w~rl~~~v~~ll~~~~~~~e~ 137 (230)
.++..+-.|.- |.++-.+. .++..+..+++.+|+.+|||++++. .|.+.++.++-.+++....-.++
T Consensus 778 ~lv~kVn~WLv~sRWkk~q~~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~kns~k~~ei 855 (1259)
T KOG0163|consen 778 ELVAKVNKWLVRSRWKKSQYGALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHRPRIAGIRKINALLKNSLKTIEI 855 (1259)
T ss_pred HHHHHHHHHHHHhHHHHhhhhhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhHHHHHH
Confidence 33333322221 11222222 2455667789999999999999884 56777888888877655444433
No 7
>KOG0162|consensus
Probab=99.60 E-value=2.1e-15 Score=141.79 Aligned_cols=100 Identities=13% Similarity=0.233 Sum_probs=87.0
Q ss_pred ccccccccccccchHHHHhhhC-----------CCCccchHHHHhHhccccccccCCcceeeecc-CchHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS-----------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRS-SVLPQLEAERDKKL 69 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~-----------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~-g~l~~LE~~R~~~l 69 (230)
+|||||||.+|..|+.|++||. +|...+|..++....++.++||+|.||||.+. ..|-.||++|+.+.
T Consensus 616 iRvRRAGfAYRr~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~ 695 (1106)
T KOG0162|consen 616 IRVRRAGFAYRRAFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKW 695 (1106)
T ss_pred eeehhhhhHHHHHHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHh
Confidence 7999999999999999999941 34556677777777888899999999999995 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q psy6619 70 SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQ 103 (230)
Q Consensus 70 ~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ 103 (230)
..++..||+.||.|++|++|.+++.. |.-+++
T Consensus 696 d~~A~~IQkAWRrfv~rrky~k~ree--~t~ll~ 727 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYEKMREE--ATKLLL 727 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 99999999999999999999999864 444443
No 8
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.33 E-value=4e-13 Score=131.27 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=55.6
Q ss_pred ccccccccccccchHHHHhhh---CC-------------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA-------------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~-------------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..++.+.++|++|+||||||+|+++.||+.|
T Consensus 688 iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 688 ARLHRLGFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred HHHHhcCCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 689999999999999999994 11 33455778888898888999999999999999999999875
No 9
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.31 E-value=8.5e-13 Score=127.59 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=54.2
Q ss_pred ccccccccccccchHHHHhhh---CC-------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA-------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKL 69 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~-------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l 69 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..++ .++|++|+||||||+|+++.||++|++.+
T Consensus 599 iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~--~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 599 IRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMG--LKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCC--CCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 689999999999999999994 21 23345666666664 46899999999999999999999998753
No 10
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.30 E-value=1.1e-12 Score=127.63 Aligned_cols=63 Identities=8% Similarity=0.165 Sum_probs=55.8
Q ss_pred ccccccccccccchHHHHhhhC---------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAE 64 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~ 64 (230)
+||+|+|||+|++|++|+.||. .+++..|..++..++++.++|++|+||||||+|+++.||.+
T Consensus 644 vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 644 LDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 6899999999999999999942 14566788889999988899999999999999999999975
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.29 E-value=8.1e-13 Score=127.89 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=55.0
Q ss_pred ccccccccccccchHHHHhhh---CC--------CCccchHHHHhHhccccccccCCcceeeeccC-chHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSS-VLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g-~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..++...++|++|+||||||+| +++.||++|
T Consensus 599 iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 599 VRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 689999999999999999994 22 33456778888888888899999999999997 899999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.26 E-value=1.7e-12 Score=125.66 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=55.1
Q ss_pred ccccccccccccchHHHHhhh---CC------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .+ ++...|..++..++++.++|++|+||||||+|+++.||+.|
T Consensus 605 iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 605 VRISRSGYPTRMTHQEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHhcCCCccccHHHHHHHHHHhCccccCCCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 689999999999999999994 22 33445667788888888999999999999999999999875
No 13
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.24 E-value=2.2e-12 Score=125.29 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=55.2
Q ss_pred ccccccccccccchHHHHhhh---CC--------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..++++.++|++|+||||||+|++..||++|
T Consensus 619 vrirr~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 619 IRICRKGFPNRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHHcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 689999999999999999994 21 23446778888888888999999999999999999999875
No 14
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.22 E-value=3.4e-12 Score=123.88 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=54.6
Q ss_pred ccccccccccccchHHHHhhh---CC-------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA-------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~-------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..+....++|++|+||||||+|+++.||+.|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 689999999999999999994 21 33456677788877777899999999999999999999875
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.21 E-value=4.5e-12 Score=122.98 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=56.6
Q ss_pred ccccccccccccchHHHHhhh---CC--------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERD 66 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~ 66 (230)
+||+++|||+|+||++|+.|| .+ +++..|..++..++++.++|++|+||||||+|++..||+.|+
T Consensus 602 iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 602 IRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHccccceecHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 689999999999999999994 11 245567788888888889999999999999999999999885
No 16
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.18 E-value=6.8e-12 Score=121.40 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=52.0
Q ss_pred ccccccccccccchHHHHhhh---CCC---------CccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SAS---------PQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~~---------~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|+||.+|+.|| .++ ++..+..++..+....++|++|+||||||+|++..||+.|
T Consensus 596 iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 596 IRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHcCcCceecHHHHHHHHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 689999999999999999994 221 1223445666667777899999999999999999999875
No 17
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.17 E-value=8.2e-12 Score=120.43 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=50.1
Q ss_pred ccccccccccccchHHHHhhh---CC-------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA-------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~-------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .. +.+..|..++..++ .++|++|+||||||+|+++.||.+|
T Consensus 582 iri~r~Gyp~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~il~~~~--~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 582 ARIRRQGFSHRILFANFIRRYCFLAYRFEEEPVSSPESCALILEKAK--LDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHcCCCccccHHHHHHHHHHhccccccccCChHHHHHHHHHhCC--CCCEEecceEEEEecCHHHHHHhcC
Confidence 689999999999999999994 21 23345556666554 4689999999999999999999865
No 18
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.17 E-value=9.7e-12 Score=120.42 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=52.3
Q ss_pred ccccccccccccchHHHHhhh---CCC------Cccc-hHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SAS------PQRN-HDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~~------~~~~-~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|++|++|+.|| .++ +... +..++..+++..++|++|+||||||+|++..||.+|
T Consensus 604 vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 604 VRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred HHHHHccCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 689999999999999999994 221 2222 245667778778899999999999999999999875
No 19
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.13 E-value=2.5e-11 Score=117.81 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=55.5
Q ss_pred ccccccccccccchHHHHhhh---CC----CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA----SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDK 67 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~----~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~ 67 (230)
+||+|+|||+|++|++|+.|| .+ +....|..++..++.+.++|++|+||||||++....||+.-+.
T Consensus 618 irirr~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~~ 690 (692)
T cd01385 618 VRIRRAGYSVRYTYQDFTQQYRILLPKGAQSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLHR 690 (692)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCcccccchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHhh
Confidence 689999999999999999994 22 2233466788888888889999999999999999999987543
No 20
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.10 E-value=2.6e-11 Score=117.77 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=52.8
Q ss_pred ccccccccccccchHHHHhhhC---CC-------CccchHHHHhHhccccccccCCcceeeeccCchHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---AS-------PQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAER 65 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~~-------~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R 65 (230)
+||+|+|||+|+||++|+.||. ++ ....|..++..++.+.++|++|+||||||+|++..||+.|
T Consensus 606 irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 606 IRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred HHHHHccCCceeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 6899999999999999999942 11 1112566777788888999999999999999999999864
No 21
>KOG0161|consensus
Probab=98.45 E-value=6.9e-06 Score=86.61 Aligned_cols=40 Identities=50% Similarity=1.188 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHH
Q psy6619 101 CIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAK 140 (230)
Q Consensus 101 ~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~ 140 (230)
+||+|+|.|+.+++||||++|.+|+|||.+.....++.+.
T Consensus 804 ~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~ 843 (1930)
T KOG0161|consen 804 VIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAK 843 (1930)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 4899999999999999999999999999988887776654
No 22
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.29 E-value=0.00046 Score=36.46 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6619 98 AVRCIQRNVRKFMDVR 113 (230)
Q Consensus 98 A~~~IQ~~~R~~~~rr 113 (230)
|+++||+.||||++++
T Consensus 3 aai~iQ~~~R~~~~Rk 18 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARK 18 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
No 23
>KOG0160|consensus
Probab=97.21 E-value=0.014 Score=58.09 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=63.7
Q ss_pred CCcceeeeccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHH
Q psy6619 46 SPVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWR-LYLKI 124 (230)
Q Consensus 46 ~G~TKVFfr~g~l~~LE~~R~~~l~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~r-l~~~v 124 (230)
++..+++|+......+-...=......++.+|+.+||+++|. ..+ ...|+++||+.+|+|..++.+.-.. ....+
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~--~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~ 747 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE--REAAAIGIQKECRSYLNRRRYRALIPASITI 747 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777666666655554567788999999999999998 333 4579999999999999999765333 45566
Q ss_pred hhhhHhhhhhHH
Q psy6619 125 NPLLNVHRTDQE 136 (230)
Q Consensus 125 ~~ll~~~~~~~e 136 (230)
++.++++..+.|
T Consensus 748 qs~~r~~~~r~e 759 (862)
T KOG0160|consen 748 QSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHhccc
Confidence 777776655543
No 24
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.18 E-value=0.0098 Score=61.44 Aligned_cols=107 Identities=22% Similarity=0.225 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhH
Q psy6619 76 FQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVP 155 (230)
Q Consensus 76 iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R 155 (230)
+-+...+.|.-.+-..+. ..++.||+.|||+..|+.+. .......++..+|.+++
T Consensus 728 fKagvL~~LE~~Rd~~~~---~~~~~iq~aiR~~~~rrr~~----------------------~~~k~i~~~~~~~~~~~ 782 (1463)
T COG5022 728 FKAGVLAALEDMRDAKLD---NIATRIQRAIRGRYLRRRYL----------------------QALKRIKKIQVIQHGFR 782 (1463)
T ss_pred eeCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHhcccc
Confidence 333345666555544444 67899999999998877421 11233456777888888
Q ss_pred HHHHHhchHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 156 KLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERN 207 (230)
Q Consensus 156 ~~l~~r~w~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ 207 (230)
.+..+..++||+++.+.+|++......+++.+....+..++..+.+......
T Consensus 783 ~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~ 834 (1463)
T COG5022 783 LRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE 834 (1463)
T ss_pred hhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8877889999999999999999999999999999999999877666655544
No 25
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.07 E-value=0.00099 Score=35.14 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 71 SRVIEFQARCRGYLARKHLA 90 (230)
Q Consensus 71 ~~~~~iQ~~~Rg~l~r~~~~ 90 (230)
..++.||+.+|||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999874
No 26
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.52 E-value=0.0038 Score=34.62 Aligned_cols=20 Identities=50% Similarity=0.677 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 70 SSRVIEFQARCRGYLARKHL 89 (230)
Q Consensus 70 ~~~~~~iQ~~~Rg~l~r~~~ 89 (230)
...++.||+.+|||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34456666666666666655
No 27
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.49 E-value=0.021 Score=31.59 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q psy6619 97 VAVRCIQRNVRKFMDVRDW 115 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~ 115 (230)
.|++.||+.||||..++.+
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999864
No 28
>KOG2128|consensus
Probab=95.10 E-value=0.61 Score=48.57 Aligned_cols=139 Identities=24% Similarity=0.253 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhh----HhHHHHHHHHHHHHHHHHH--HhhH---HHHHHHHHHhhhhHhhhhhHH----HHHHHH
Q psy6619 76 FQARCRGYLARKHLAKL----KVQDVAVRCIQRNVRKFMD--VRDW---SWWRLYLKINPLLNVHRTDQE----LQAKSV 142 (230)
Q Consensus 76 iQ~~~Rg~l~r~~~~~~----~~~~~A~~~IQ~~~R~~~~--rr~~---~w~rl~~~v~~ll~~~~~~~e----~~k~~~ 142 (230)
+|+.+||+..|..+.-. ..+.-.+..||..|||++. -+.- ...+-....+++.++..++.. .+-...
T Consensus 541 ~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~ 620 (1401)
T KOG2128|consen 541 IQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKD 620 (1401)
T ss_pred hhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 37777777766654211 1112346667777777662 1110 111123334444444433332 233455
Q ss_pred HHHHHHHHHhhhHHHHHHhchHHHHHHHhhcc----------cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 143 QDVAVRRIQRNVPKLMDVRDWSWWRLYLKINP----------LLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 143 ~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkp----------ll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
...+++.||..+|++..+.++.-.. ..--| ++..... .-..|.+++.+++++...-..-.++|..
T Consensus 621 ~~~~~i~iqs~~r~f~~r~~y~~L~--~s~npsl~~vrkFV~lld~~~~---df~~e~~le~lr~eIsrk~~sne~Lekd 695 (1401)
T KOG2128|consen 621 NMTKIIKIQSKIRKFPNRKDYKLLF--TSENPSLETVRKFVHLLDQTDV---DFEEELELEKLREEISRKIRSNEQLEKD 695 (1401)
T ss_pred hhhhHHHHHHHHHhcccchHHHHHh--cCCCCchhhHHhhhhhcCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999988775433 11111 2333221 2233444555555555544444555555
Q ss_pred HHHHHHH
Q psy6619 213 NTRLETK 219 (230)
Q Consensus 213 ~~~le~~ 219 (230)
.+.|.++
T Consensus 696 i~~md~k 702 (1401)
T KOG2128|consen 696 INEMDEK 702 (1401)
T ss_pred HHHHHHH
Confidence 5555444
No 29
>PTZ00014 myosin-A; Provisional
Probab=94.15 E-value=0.22 Score=50.06 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRD 162 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~ 162 (230)
..+.+||+.||+|..|+.+ +..+.++.+||+++|+|+.++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~-------------------------~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKV-------------------------RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999988742 1235689999999999998754
No 30
>KOG0520|consensus
Probab=92.55 E-value=0.32 Score=49.04 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhH
Q psy6619 70 SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDW 115 (230)
Q Consensus 70 ~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~ 115 (230)
...+..||..++||..|+.|.-++ .-++.||..+|||..+++|
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr---~p~v~iqa~~rg~q~r~dy 852 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTR---QPIVKIQAAVRGYQVRKDY 852 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccC---CccccchhhhhchhHhhhh
Confidence 345788999999999999998887 4678999999999999875
No 31
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=92.26 E-value=0.038 Score=54.33 Aligned_cols=43 Identities=9% Similarity=0.295 Sum_probs=29.7
Q ss_pred ccccccccccccchHHHHhhhC---CCCcc----chHHHHhHhccccccc
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---ASPQR----NHDLEYNHCAILMNRV 44 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~~~~~----~~~~~~~~~~~~~~~~ 44 (230)
++|+++|||+|++|.+|+.||. +.... ...+..+.|..++...
T Consensus 623 vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~ 672 (689)
T PF00063_consen 623 VRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQL 672 (689)
T ss_dssp HHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHT
T ss_pred hhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhC
Confidence 5899999999999999999953 22221 1345566676655443
No 32
>KOG0163|consensus
Probab=89.50 E-value=25 Score=35.30 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q psy6619 69 LSSRVIEFQARCRGYLARKHLAKLK 93 (230)
Q Consensus 69 l~~~~~~iQ~~~Rg~l~r~~~~~~~ 93 (230)
-...++.+|+++||||+|+++....
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHH
Confidence 3456789999999999999986544
No 33
>KOG2128|consensus
Probab=85.97 E-value=11 Score=39.89 Aligned_cols=45 Identities=33% Similarity=0.525 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----HhHHHHHHHHHHHHHHHHHHhhH
Q psy6619 71 SRVIEFQARCRGYLARKHLAKL----KVQDVAVRCIQRNVRKFMDVRDW 115 (230)
Q Consensus 71 ~~~~~iQ~~~Rg~l~r~~~~~~----~~~~~A~~~IQ~~~R~~~~rr~~ 115 (230)
.-++.+|++.||+++|+.|.+. +....+++.||..+|++..+..+
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y 641 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDY 641 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHH
Confidence 3467888888888888887433 23346788888888888877643
No 34
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=84.85 E-value=6.1 Score=29.18 Aligned_cols=55 Identities=18% Similarity=0.336 Sum_probs=42.3
Q ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 167 RLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 167 ~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
++|..|.|.+-....+.....+++.++.+..++...++...+++.++.+++.++.
T Consensus 47 ~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 47 EVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred hHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555545555567778888889999999999999999999999988888765
No 35
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.88 E-value=11 Score=25.39 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
.+|+.+....+-.+..+|...+.+..+|+.++..|+.++..
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888888888888888887754
No 36
>KOG4229|consensus
Probab=80.86 E-value=3 Score=43.02 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=74.4
Q ss_pred cccccccccccchHHHHhhhCCCCccchH----HHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHH-HHHHHH
Q psy6619 3 EIVKEALSNAVISTQIVKKLSASPQRNHD----LEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSS-RVIEFQ 77 (230)
Q Consensus 3 rI~raGyP~R~~~~~F~~R~~~~~~~~~~----~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~-~~~~iQ 77 (230)
.++.+||+..+++.+|..-..-.+...++ ........+.++++.|++++|....-...++..-...... .+...|
T Consensus 847 ~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ 926 (1062)
T KOG4229|consen 847 QVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQ 926 (1062)
T ss_pred hheeccccccccchhccccccccCCccchhhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHH
Confidence 57889999999999988873222222222 2222223356889999999999988777776654333332 467788
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHh
Q psy6619 78 ARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVR 113 (230)
Q Consensus 78 ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr 113 (230)
.+++-...++.+.++. .+.+++| ++.+..++
T Consensus 927 ~~~~~~~~~~~~~~~~---~~~v~~~--~~~~~~~~ 957 (1062)
T KOG4229|consen 927 KWFRLTLERKGLLRLS---EGSVLIQ--RLELLGRR 957 (1062)
T ss_pred HHHHhhhccccchhhc---chhHHHH--HHHHhccc
Confidence 8999888888888887 5777888 77777766
No 37
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.16 E-value=14 Score=27.57 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=40.4
Q ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 167 RLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 167 ~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+.|.-|.|.|-...-+.....+++.++.+...+..+++....++.++.++++.+.
T Consensus 51 ~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 51 PVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556667888888888888888888888888888888887753
No 38
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.99 E-value=14 Score=28.12 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=38.9
Q ss_pred HHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 166 WRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 166 ~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
-..|.-|.|+|-...-++....+++.++.+..++..++.....++.++.+++..+
T Consensus 54 ~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 54 TPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred chhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555666777777777777888888877777777777777665
No 39
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.94 E-value=6.6 Score=31.51 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
+.+++..++.++..|++++..++...+.++..+..|.......+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 56779999999999999999999988888888887776654443
No 40
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.55 E-value=14 Score=30.93 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFL 226 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~~ 226 (230)
.+..+.+++++++.|+++++...++...++.++..+.+....+=|+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~ 175 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777999999999999999999999999999999888777664
No 41
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=71.77 E-value=15 Score=26.31 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
+.++..+++..++++...+.+.++||.+..++|.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777766666654
No 42
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.45 E-value=18 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=39.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 176 LNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 176 l~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+-....+.....++++.+.+.+++..++.....++.++.++++++.+
T Consensus 55 fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335667788999999999999999999999999999999887753
No 43
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.08 E-value=20 Score=31.92 Aligned_cols=41 Identities=37% Similarity=0.460 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+.++..++.|.+.+.++|.+++.+..++++++.+++.+..
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666667777777777777666666666665543
No 44
>KOG0520|consensus
Probab=67.62 E-value=17 Score=37.17 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH-------hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-hhHhhhhhHHHH----
Q psy6619 71 SRVIEFQARCRGYLARKHLAKLK-------VQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINP-LLNVHRTDQELQ---- 138 (230)
Q Consensus 71 ~~~~~iQ~~~Rg~l~r~~~~~~~-------~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~-ll~~~~~~~e~~---- 138 (230)
.-++.||+.+|||-.|+.|.++. .-..++.++|+.+|+|..++. +....+ -.-..+..+.++
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~------~e~~~~a~t~~e~~yd~yKq~~~ 907 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRAL------FEEQETAATVIEDCYDFYKQLRK 907 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccc------hhccccccchHHHHHHHHHHHHH
Confidence 45789999999999999996443 223567888888888876652 111110 000000011111
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHhchH
Q psy6619 139 -AKSVQDVAVRRIQRNVPKLMDVRDWS 164 (230)
Q Consensus 139 -k~~~~~~a~~~IQ~~~R~~l~~r~w~ 164 (230)
-...-..|+..||.-+|.+-+...+.
T Consensus 908 ~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 908 QTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 11233468888888888887774443
No 45
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=65.64 E-value=37 Score=25.96 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=38.5
Q ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 167 RLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 167 ~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+|..|.++|--..-++...++++..+.+.-++..++..-+.+++++.+|.+++-
T Consensus 54 ~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 54 PVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555565554333556667788888888888888888877778888877777653
No 46
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.32 E-value=16 Score=29.87 Aligned_cols=38 Identities=39% Similarity=0.471 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.++..+.++|++.+++++++.+.+.+.+..+.+.++++
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567778888888888888888888888888877765
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.87 E-value=30 Score=27.86 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.|...+++|++.|+++++.++....+++++...++++
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544444
No 48
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.46 E-value=39 Score=22.67 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+.+|+...+......+....+.|.++.+|+.++.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666665554
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.34 E-value=33 Score=26.24 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
...++.+|.|+..+++++...+..+.++.+.+..|....
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777766665555443
No 50
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=63.75 E-value=16 Score=25.71 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
+-+|.......+..++++++.+|.+..+||
T Consensus 48 tREEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 48 TREEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444454554444444444444
No 51
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=61.59 E-value=33 Score=23.33 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
....+..++++++.++++++.+..+++.+...|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555
No 52
>KOG4603|consensus
Probab=61.50 E-value=33 Score=27.99 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
.+++++..++.++.++.++++.+...-+..|+.++.|.+.++.
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 3677888888888888888887777777777777666655544
No 53
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.21 E-value=23 Score=33.45 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKS-------KLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 185 ~~~~e~e~~~l~e-------~l~~~e~~~~ele~~~~~le~~~ 220 (230)
..++|+++++++. ..++.+.+.+++|+.+..|++++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444 44455556666666666666665
No 54
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.69 E-value=45 Score=23.06 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
|+.++.+++..|..+.+.....+..++.....+.+++.
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777788888877777776653
No 55
>PHA01750 hypothetical protein
Probab=59.61 E-value=27 Score=23.84 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=29.6
Q ss_pred HHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 164 SWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 164 ~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.-..+|.|+|..|+.+.. .-...|+..|+.+++.....-.+++++..++..++
T Consensus 20 aIiqlYlKIKq~lkdAvk----eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 20 AIIQLYLKIKQALKDAVK----EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 334567777655554421 12234555566666666666666666666666554
No 56
>KOG1962|consensus
Probab=59.06 E-value=1.1e+02 Score=25.88 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+++.++..++.+.|+++++....+.+..+.+...|..+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666555555555555544
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.85 E-value=47 Score=26.06 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+.+...++.++..|..+...++.....+++.+..+.+.+..
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666666666666666655555555443
No 58
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.24 E-value=1.2e+02 Score=25.88 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6619 68 KLSSRVIEFQARCRGYLARKH 88 (230)
Q Consensus 68 ~l~~~~~~iQ~~~Rg~l~r~~ 88 (230)
.-...+-.+|-..||+..+..
T Consensus 70 ~GReLA~kf~eeLrg~VGhiE 90 (290)
T COG4026 70 VGRELAEKFFEELRGMVGHIE 90 (290)
T ss_pred hhHHHHHHHHHHHHHhhhhhh
Confidence 344567778888888877654
No 59
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=56.97 E-value=49 Score=23.40 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
|+.++.+++..+.++.......+.+|+.+...|.++.
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3556666666666666666666777777666666554
No 60
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=56.16 E-value=22 Score=25.16 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 198 KLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 198 ~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
+|.++-..+.+++..+..+|+++-+-
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~ 28 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDK 28 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 61
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=56.01 E-value=45 Score=26.90 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
++.++..+++.|+.+++.+++....+++....|
T Consensus 112 e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 112 QNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333
No 62
>KOG4427|consensus
Probab=55.99 E-value=35 Score=34.26 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6619 69 LSSRVIEFQARCRGYLARKHLA 90 (230)
Q Consensus 69 l~~~~~~iQ~~~Rg~l~r~~~~ 90 (230)
-...+..||+.+|||++|++|.
T Consensus 29 r~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 29 REAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888763
No 63
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=55.60 E-value=39 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHH
Q psy6619 179 HRTDQELQAKSEELEALKSKLE 200 (230)
Q Consensus 179 ~~~~~e~~~~e~e~~~l~e~l~ 200 (230)
.....+..++..|+.++++++.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELN 57 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888887765
No 64
>KOG0164|consensus
Probab=54.57 E-value=55 Score=32.74 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhch
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDW 163 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w 163 (230)
.-++.||+.||||++|.++..++-. ..+++-. ..+ +....+..||+.+|++..++++
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~---~~ii~wy------R~~-K~ks~v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKAS---ATIIRWY------RRY-KLKSYVQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------HHH-HHHHHHHHHHHHHHhhhhcccc
Confidence 3578999999999999876544321 1122111 111 3456788899999999888764
No 65
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=54.03 E-value=58 Score=28.31 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 143 QDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 143 ~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
-..|+..|+..+..+++--+..| ++++....++|++.|..=++..+..-..++...++|++..
T Consensus 181 ~~sa~~rlE~~l~~~l~~~d~~W---------------A~eA~~R~~eel~lL~~fYE~~eek~E~y~~ek~al~~qY 243 (260)
T PF11079_consen 181 PKSALKRLEQYLEQYLSQEDHDW---------------AEEARERWQEELALLDHFYEDEEEKPEQYEIEKQALQEQY 243 (260)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHH---------------HHHHHHHHHHHHHHHHHhhcchhcchHHHHHHHHHHHHHh
Confidence 34688999999999999988888 5677788888888888777777666677777777766543
No 66
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=53.90 E-value=62 Score=21.37 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
..+..+++++..|..+...+......|+..+..|..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555555555555544
No 67
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=50.08 E-value=63 Score=25.83 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
-.+++.|...|.++|.+++....++|..+.+|-..|+..
T Consensus 100 AkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~~ 138 (152)
T PF11500_consen 100 AKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMASK 138 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347788888888899999999999999888888887754
No 68
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.51 E-value=82 Score=24.87 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
..+..+++|+......++...+...+++.....++..+...
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666666666666666666666666555443
No 69
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=49.46 E-value=57 Score=23.28 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQ 211 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~ 211 (230)
..++.+-.+.+..++.++..++.+..|+|.
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777663
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.05 E-value=75 Score=20.90 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+.++.+++..+..++.+.++......++++....+-
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666555443
No 71
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.66 E-value=41 Score=30.28 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=26.5
Q ss_pred HHHHHhhcccccc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 166 WRLYLKINPLLNV--------HRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 166 ~~l~~kvkpll~~--------~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+..+.+|+|+-.. ......+...+.++..+.+++..++....+...+...++.++
T Consensus 210 ~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 210 YEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567786321 123344455555555555555555554444444444444443
No 72
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.53 E-value=48 Score=31.36 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 194 ALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 194 ~l~e~l~~~e~~~~ele~~~ 213 (230)
.+++++++++.+...|++++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 73
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=48.08 E-value=47 Score=23.37 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
+.++.+|+..|+++++++++++.+..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888887776555543
No 74
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.77 E-value=76 Score=27.76 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+++.+.+.+++.+++++.....+..+++.+...|..
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544444444444444444443
No 75
>PRK11637 AmiB activator; Provisional
Probab=47.33 E-value=69 Score=29.60 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.++...+.+++.++.++.+.+.+..+++.+++..++.+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 76
>PRK01203 prefoldin subunit alpha; Provisional
Probab=47.23 E-value=45 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHhhhcCC
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK--TKIREFLLP 228 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~--~~~~~~~~~ 228 (230)
-++++.-++.+++.+.++++.++....++.+-.+.++.. -...+.|.|
T Consensus 5 ~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVP 54 (130)
T PRK01203 5 VEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLIS 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEE
Confidence 467788999999999999999999999999988888773 245666666
No 77
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=46.25 E-value=50 Score=22.01 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVE 205 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~ 205 (230)
|..+..+|.++++.+.+.++.|.+
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~ 54 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEAR 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 78
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=46.03 E-value=21 Score=33.82 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+..++ +|++|+.+|++++++..++..++++.|.+-.-
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~ 63 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKHSAG 63 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhcccccccchhhHhhhc
Confidence 33344 78888888888888887777777777765443
No 79
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=45.76 E-value=90 Score=22.46 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+.++..|++..++++++.+.....|+.+.+.++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666554
No 80
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.60 E-value=68 Score=23.81 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREF 225 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~ 225 (230)
+..++.++++++.+-+.++.+...+.... ++-++++..++
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~~~-dyiEe~AR~~L 75 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKGGQ-EAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcH-HHHHHHHHHHc
Confidence 44444444444444444444444443322 33334444443
No 81
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=44.72 E-value=99 Score=21.04 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+..+..|+..|+++......++..+-+++...-+++.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888877777766655543
No 82
>PRK11637 AmiB activator; Provisional
Probab=44.14 E-value=83 Score=29.07 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
+.++...+.++..++.++...+.+..+++.++..+++++...
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555544
No 83
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.76 E-value=1.1e+02 Score=21.20 Aligned_cols=33 Identities=36% Similarity=0.324 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 188 KSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 188 ~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+.+++..|+++.+++...+....+.+..|-.++
T Consensus 37 L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 37 LKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555555555554444
No 84
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=43.50 E-value=94 Score=20.45 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+.++|.++..+...+...+.+-+++.+.+..+++-+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666655555555544
No 85
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.34 E-value=50 Score=21.98 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+|.+.|++++.+++.+-.++|..+.-|...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666665543
No 86
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=43.33 E-value=58 Score=19.22 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 188 KSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 188 ~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+..|+..|+..+..-+..-.+||++-+.|.
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~ 31 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELS 31 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 446777777777777777777777766653
No 87
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=42.77 E-value=53 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
.+|..++.|+.+|++.|.+....|.+....
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777777777777777777777666554
No 88
>KOG0942|consensus
Probab=42.47 E-value=31 Score=35.12 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 69 LSSRVIEFQARCRGYLARKHLAK 91 (230)
Q Consensus 69 l~~~~~~iQ~~~Rg~l~r~~~~~ 91 (230)
-.+.++.+|+.+|||.+|++.+.
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHH
Confidence 44556777777777777766544
No 89
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=42.25 E-value=80 Score=26.68 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
.+.+|+++.++++..|.+-+...-++|.|..+++..|-
T Consensus 23 ~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 23 EANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999988876
No 90
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.14 E-value=98 Score=27.04 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
..+.++++...+.++.+++.+..++++.+.+-
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433333
No 91
>smart00338 BRLZ basic region leucin zipper.
Probab=42.07 E-value=1e+02 Score=20.37 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
+..++.++..|..+-..+......++..+..|.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 92
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=41.90 E-value=99 Score=22.58 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+.....++.+++.+.+++...++...+++.++.+|
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777777777777777777777777777665
No 93
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.42 E-value=1.2e+02 Score=20.99 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy6619 210 KQDNTRL 216 (230)
Q Consensus 210 e~~~~~l 216 (230)
+..+..|
T Consensus 60 e~~~~~l 66 (74)
T PF12329_consen 60 EKELESL 66 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 94
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=39.91 E-value=1.3e+02 Score=22.61 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+..++++++.+.++.++++....+.+++++.|..+
T Consensus 81 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 81 QLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777777777777777777777777777766544
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.45 E-value=1.4e+02 Score=23.38 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy6619 187 AKSEELEALKS 197 (230)
Q Consensus 187 ~~e~e~~~l~e 197 (230)
.+++.+..+++
T Consensus 53 ~~~~~l~~~k~ 63 (143)
T PF12718_consen 53 KLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 96
>KOG4427|consensus
Probab=39.14 E-value=66 Score=32.39 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q psy6619 96 DVAVRCIQRNVRKFMDVRDW 115 (230)
Q Consensus 96 ~~A~~~IQ~~~R~~~~rr~~ 115 (230)
..|++.||+.+|+|++|+.+
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999864
No 97
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.07 E-value=1.1e+02 Score=22.51 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
..+..++..++.+.+++...++...++++++.+|
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777777777777665
No 98
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.88 E-value=2.5e+02 Score=24.87 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~el 209 (230)
++..+.+.|.||..|+.+|....++|-|-
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrEDWIEE 108 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMREDWIEE 108 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666665443
No 99
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.86 E-value=1.3e+02 Score=22.50 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
...+++.++.+.++++..+.....++......++.
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666555555544
No 100
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.64 E-value=90 Score=23.10 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=16.5
Q ss_pred HHHHH-HHHHHHHHHHHH----HHHHHHHHHHHH
Q psy6619 185 LQAKS-EELEALKSKLEK----LEVERNLLKQDN 213 (230)
Q Consensus 185 ~~~~e-~e~~~l~e~l~~----~e~~~~ele~~~ 213 (230)
+.++| ++|++|++++.+ .+++.+++|+.+
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33343 566777777766 555555555443
No 101
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.47 E-value=1.6e+02 Score=21.81 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++...-+++.++.+...+...++...+++.++..++..+.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888888899999999999999988888887664
No 102
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=38.41 E-value=53 Score=25.56 Aligned_cols=29 Identities=34% Similarity=0.593 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
+.++..++.|+..|+++|......-..+|
T Consensus 100 e~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 100 EAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666555544444444
No 103
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.15 E-value=1.1e+02 Score=26.63 Aligned_cols=40 Identities=13% Similarity=0.315 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
+.+...++..+++++.+.+...++++.++..+++.++.|.
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555666666666666665554
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.87 E-value=1.1e+02 Score=27.19 Aligned_cols=10 Identities=0% Similarity=0.089 Sum_probs=8.2
Q ss_pred ccchHHHHhh
Q psy6619 12 AVISTQIVKK 21 (230)
Q Consensus 12 R~~~~~F~~R 21 (230)
+++-.+|++.
T Consensus 13 ~isL~~FL~~ 22 (325)
T PF08317_consen 13 PISLQDFLNM 22 (325)
T ss_pred CcCHHHHHHH
Confidence 4788899887
No 105
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.77 E-value=2.3e+02 Score=23.25 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
..+++++..|+++...++....+++.+...+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 106
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.54 E-value=1.4e+02 Score=20.61 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
....+++.++.++++.+.+..+|+.+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.25 E-value=1.2e+02 Score=27.04 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy6619 190 EELEALKSKLE 200 (230)
Q Consensus 190 ~e~~~l~e~l~ 200 (230)
+|+..++.+-+
T Consensus 64 ~eL~~LE~e~~ 74 (314)
T PF04111_consen 64 QELEELEKERE 74 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=37.20 E-value=1.1e+02 Score=26.82 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHhh
Q psy6619 184 ELQAKSEELEALKSKLEKLEVE----RNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~----~~ele~~~~~le~~~~~~~ 224 (230)
.+..+.+|+++|++++.++..+ ..++++++++|.+-+...+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4556666666666665544222 2347777777777665543
No 109
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.17 E-value=1e+02 Score=22.30 Aligned_cols=32 Identities=38% Similarity=0.437 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
..++.+++++++.++.++...+....-++..+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444444444433
No 110
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.09 E-value=1.3e+02 Score=26.41 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.++++.+..+.+.+.+.+|..++..+..+...+..+..||
T Consensus 219 ~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 219 KEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 111
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=36.97 E-value=82 Score=30.84 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
.+.++.+|+++++++++..+.+|.++++.+.+++
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777777888888888888888888888777766
No 112
>COG1422 Predicted membrane protein [Function unknown]
Probab=36.92 E-value=1.5e+02 Score=24.81 Aligned_cols=20 Identities=0% Similarity=0.263 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKL 202 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~ 202 (230)
+++++..+++++.+++.++.
T Consensus 72 ekm~~~qk~m~efq~e~~eA 91 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREA 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555554443
No 113
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.57 E-value=1.2e+02 Score=26.21 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
....++|+|+..+..++..++.+...++..+.+|=+|+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888888888888888887775
No 114
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.28 E-value=1.2e+02 Score=22.37 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
.+..++.+++.+++.++.++...++..+-++...
T Consensus 62 Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 62 PTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 115
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=36.10 E-value=51 Score=19.60 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHh
Q psy6619 98 AVRCIQRNVRKFMDVR 113 (230)
Q Consensus 98 A~~~IQ~~~R~~~~rr 113 (230)
|+..||.++|.|.+++
T Consensus 11 At~lI~dyfr~~K~rk 26 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRK 26 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999998776
No 116
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=36.07 E-value=1.9e+02 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 198 KLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 198 ~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
-+++.+..+.+++.++++|++++...
T Consensus 147 ~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 147 LIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666665543
No 117
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.80 E-value=5e+02 Score=28.09 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 135 QELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 135 ~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
..+........++..|...++.|.......-..-+...+ ........++...+.+++..++++...++.+..++.+..
T Consensus 237 ~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 314 (1353)
T TIGR02680 237 DELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQ--TQYDQLSRDLGRARDELETAREEERELDARTEALEREAD 314 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777654332222111100 011122333444444444444444444444444444444
Q ss_pred HHHH
Q psy6619 215 RLET 218 (230)
Q Consensus 215 ~le~ 218 (230)
.+++
T Consensus 315 ~l~~ 318 (1353)
T TIGR02680 315 ALRT 318 (1353)
T ss_pred HHHH
Confidence 4433
No 118
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=35.69 E-value=96 Score=22.41 Aligned_cols=37 Identities=32% Similarity=0.402 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
......++.+|+++++.++.++..++..++.++..+.
T Consensus 65 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 65 KESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999988887653
No 119
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.68 E-value=1.4e+02 Score=25.50 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+..++.+.+++++++..++...+.|++.++.+..+
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 44444444555555555554444444444444433
No 120
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.67 E-value=1.3e+02 Score=19.78 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
+..+..++.++..|..++..+......|...
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445666666666666666666666665544
No 121
>KOG4253|consensus
Probab=35.62 E-value=1.9e+02 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhH
Q psy6619 185 LQAKSEELEALKSKLE-----KLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~-----~~e~~~~ele~~~~~le~~~~~ 222 (230)
-.++-+|+..+++++. +.=+++..++.+.++|.++...
T Consensus 46 ~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~ 88 (175)
T KOG4253|consen 46 ESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELET 88 (175)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666554 3445666677777766666544
No 122
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.50 E-value=1.3e+02 Score=23.47 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+.-+.+++.|+..-..++..+.....++...+..||++
T Consensus 93 E~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 93 EIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34467777888888888888888888888888888765
No 123
>PRK14127 cell division protein GpsB; Provisional
Probab=34.49 E-value=1.6e+02 Score=22.16 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
..+..|+..|++++..++....+++.+.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444433
No 124
>PRK11677 hypothetical protein; Provisional
Probab=34.36 E-value=2.2e+02 Score=22.17 Aligned_cols=39 Identities=26% Similarity=0.145 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+..+++.|+++.+.++++++.+..+==.+-.+|-++++
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~ 67 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMA 67 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666655444344444444443
No 125
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=34.35 E-value=1.7e+02 Score=21.69 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
...+++.+++.+++++++.+.+-..|+.++..|.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455555555555555555555555555555543
No 126
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.16 E-value=1.2e+02 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+.++..++.++.+....+.+.+....+++..++.|+.+.
T Consensus 72 e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 72 ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555566665555
No 127
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.11 E-value=1.5e+02 Score=26.61 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
...++.+++++++.++.+++....+..+++.+...++.++..
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456678888888888888888888888888888777777654
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.98 E-value=1.4e+02 Score=29.17 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+..+++|+..|+..++..+....+|++++.++..++
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666665555554443
No 129
>PRK14127 cell division protein GpsB; Provisional
Probab=33.56 E-value=90 Score=23.48 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
..-++.+.+..+...++++...+++++.+++.+
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444444444443
No 130
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.51 E-value=76 Score=20.60 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 176 LNVHRTDQELQAKSEELEALKSKLEKLEV 204 (230)
Q Consensus 176 l~~~~~~~e~~~~e~e~~~l~e~l~~~e~ 204 (230)
++..-+..++.+++.|+..|+.+|+....
T Consensus 22 ~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 22 LDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445788899999999999999987653
No 131
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=33.34 E-value=1.7e+02 Score=20.53 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREF 225 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~ 225 (230)
+..+++|+..|..-...+......|-+-.+.|+....+.++
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666777666666666666666666666666665555443
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.32 E-value=1.5e+02 Score=27.66 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+.++.+.+.++..+..++.+.+....+++.++..++..+
T Consensus 65 ~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 65 EKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 334444445555555555555555555555444444433
No 133
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.31 E-value=3.8e+02 Score=24.46 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHH-HHHHhhhhHhh------hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH
Q psy6619 116 SWWRL-YLKINPLLNVH------RTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWR 167 (230)
Q Consensus 116 ~w~rl-~~~v~~ll~~~------~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~ 167 (230)
..|++ +.+|-|.|+.. .-+.-+..++....++..+..-.+.++.+-.=.+-+
T Consensus 194 ~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~ 252 (359)
T PF10498_consen 194 AEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK 252 (359)
T ss_pred HHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45554 77888887632 223334455555667777777777777765444433
No 134
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.18 E-value=1.7e+02 Score=26.76 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+.++|+.+..+.+.+...+....+++..+..+++++.+
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444444444444444444443
No 135
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.00 E-value=96 Score=22.16 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
.....++.++..+..++...+....+++..+.
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666666666666666665554
No 136
>smart00338 BRLZ basic region leucin zipper.
Probab=32.64 E-value=1.5e+02 Score=19.53 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
+.++..++.++..|..++..++.....+.+.+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666666666655543
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.60 E-value=1.8e+02 Score=25.08 Aligned_cols=42 Identities=31% Similarity=0.383 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
.......+++|+..+.++++..+.....+...+.+++....+
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>PRK10722 hypothetical protein; Provisional
Probab=32.57 E-value=1e+02 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
|+++..++++...++.+......+++.|.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777666666665553
No 139
>PHA01750 hypothetical protein
Probab=32.45 E-value=1.6e+02 Score=20.09 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
..|+..+..|+++++-+....+++..|+..++.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 556777777888888777778888887776654
No 140
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.45 E-value=1.5e+02 Score=19.88 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
.-+.++++.+..|+++++.++.++..-....
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~kK~~sr 55 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAKKKASR 55 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 3466777788888888877777665544333
No 141
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=32.44 E-value=1.2e+02 Score=24.58 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
|+.+.|+||..|++-|..-+.+..+|..+
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35566666666666666666666666654
No 142
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.43 E-value=2.1e+02 Score=21.30 Aligned_cols=18 Identities=50% Similarity=0.613 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKL 202 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~ 202 (230)
+..+-+++.+|+..+..+
T Consensus 17 l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 143
>KOG0377|consensus
Probab=32.33 E-value=96 Score=29.34 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 64 ERDKKLSSRVIEFQARCRGYLARKH 88 (230)
Q Consensus 64 ~R~~~l~~~~~~iQ~~~Rg~l~r~~ 88 (230)
.++..--+.++.||.|+|+|.||..
T Consensus 11 ~~s~raikaAilIQkWYRr~~ARle 35 (631)
T KOG0377|consen 11 KKSTRAIKAAILIQKWYRRYEARLE 35 (631)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556667777777766654
No 144
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.22 E-value=1.2e+02 Score=20.31 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
-..++.+++.+++.++++..+++.+.+.+...-..+ ++++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i-e~~AR~~ 64 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI-EKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Confidence 356677788888888888888877777774433333 3444433
No 145
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.60 E-value=2e+02 Score=24.40 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
-+..+...+.+++.+++++...+....++.--+..|.+.+..
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777777777777777666666643
No 146
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=31.42 E-value=48 Score=31.52 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
...+++..++ ++++++++..+|++++..|.+++..
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 4455555555 6666666666666666666665543
No 147
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.42 E-value=2.2e+02 Score=23.17 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+..+.+|+..|.-++...++....++.....|.+..
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666665543
No 148
>KOG3501|consensus
Probab=31.29 E-value=2.2e+02 Score=21.30 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
++++...++.+++|+.+-.=+|....|.|..+.+|
T Consensus 73 eak~k~see~IeaLqkkK~YlEk~v~eaE~nLrel 107 (114)
T KOG3501|consen 73 EAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLREL 107 (114)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544
No 149
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.88 E-value=2.1e+02 Score=23.89 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
...+...+..+..|+++.+++.++..++..++..++.+...
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666667777777777777777777776666543
No 150
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.65 E-value=3.4e+02 Score=23.10 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=27.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 176 LNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 176 l~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
|..+.+-+++-+.|.++...+.+++..+.+...|+++.
T Consensus 155 l~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 155 LEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445777788888888888888888877777776643
No 151
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.48 E-value=1.7e+02 Score=28.57 Aligned_cols=18 Identities=0% Similarity=-0.130 Sum_probs=14.6
Q ss_pred ccccccccccchHHHHhh
Q psy6619 4 IVKEALSNAVISTQIVKK 21 (230)
Q Consensus 4 I~raGyP~R~~~~~F~~R 21 (230)
+...|||.=+.|+.|+.=
T Consensus 75 ~k~lGy~~digyq~fLYp 92 (594)
T PF05667_consen 75 CKELGYRGDIGYQTFLYP 92 (594)
T ss_pred HHHcCCCCCCcchhhccC
Confidence 456799999999999874
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.39 E-value=2e+02 Score=24.40 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+..++..++.++..+...++...+++.++.++
T Consensus 65 ~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 65 IENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 153
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.36 E-value=1.9e+02 Score=26.62 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEV----------ERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~----------~~~ele~~~~~le~~~~~ 222 (230)
...+-+..+++++..++.+++++++ ++.++++++++++.++.+
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444 467777777777777655
No 154
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=30.25 E-value=2.1e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
...+.++++|++.+.+++.+.-++..++=+.+..+-..+
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888777666666655555554433
No 155
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.73 E-value=3.9e+02 Score=24.04 Aligned_cols=38 Identities=37% Similarity=0.457 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+++..+.+++++++++++++.+.....++.....++.
T Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 25 LEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666655555554444443
No 156
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.72 E-value=2.6e+02 Score=21.97 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
.+.+..++...+.|+.++..-..++..+.+.
T Consensus 51 ~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 51 EKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 157
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.36 E-value=2.3e+02 Score=20.76 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++...-++..+..+++.+.+.+....+++.....++..+.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356668888888888888888888888888888888777664
No 158
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.25 E-value=1.4e+02 Score=26.98 Aligned_cols=31 Identities=26% Similarity=0.204 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
|...+.+|+..|+.+.+++..+...||+.+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555544444444433
No 159
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.83 E-value=1.1e+02 Score=20.45 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLE 200 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~ 200 (230)
.|...++.+++.++..++
T Consensus 4 ~E~~rL~Kel~kl~~~i~ 21 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIE 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 160
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.29 E-value=3.3e+02 Score=22.16 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=5.9
Q ss_pred HHHHHHHHHhH
Q psy6619 212 DNTRLETKTKI 222 (230)
Q Consensus 212 ~~~~le~~~~~ 222 (230)
.+..||+.++.
T Consensus 133 ~l~~le~~~~~ 143 (175)
T PRK13182 133 RLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 161
>PRK09039 hypothetical protein; Validated
Probab=28.09 E-value=1.9e+02 Score=26.15 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
..++.++..++..|...+.+-.+.+.++.+|+
T Consensus 147 ~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 147 AALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 162
>KOG1962|consensus
Probab=28.00 E-value=1.3e+02 Score=25.49 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
...++...+++|++....+|+..+++...++.+.+++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566666666666666666666666665544433
No 163
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.93 E-value=1.9e+02 Score=24.81 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+|..++++|++.|+.++.+++. +++++.+|.+-
T Consensus 75 ~~en~~L~~e~~~l~~~~~~~~~----l~~en~~L~~l 108 (276)
T PRK13922 75 REENEELKKELLELESRLQELEQ----LEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44445555555555554444433 33444444443
No 164
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=27.74 E-value=3.8e+02 Score=23.27 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLL 227 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~~~ 227 (230)
+++++|+++-.+..-...=+.+++..|..|..+|.+|+
T Consensus 58 ~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li 95 (277)
T PF15030_consen 58 GKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLI 95 (277)
T ss_pred HHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334445678888888888877764
No 165
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=2.1e+02 Score=22.66 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhcCC
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR---EFLLP 228 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~---~~~~~ 228 (230)
..++...+.+++.++.++..+.....+++.-...++.--... |-|.|
T Consensus 12 ~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVp 61 (145)
T COG1730 12 AAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVP 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 345667777777778778788777777777777666655555 55555
No 166
>KOG3856|consensus
Probab=27.47 E-value=1.5e+02 Score=22.85 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+++.+|.++-+++.|+|+.+..||..+=
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~qIY 41 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLERQIY 41 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777776653
No 167
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.98 E-value=2e+02 Score=20.86 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+..++-++...+++++...+....++++++..+
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666555443
No 168
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.93 E-value=2.3e+02 Score=19.87 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEV 204 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~ 204 (230)
+..+++|+..++-+++.+..
T Consensus 19 l~~LqDE~~hm~~e~~~L~~ 38 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQD 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67778888888777777743
No 169
>KOG0942|consensus
Probab=26.73 E-value=85 Score=32.12 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q psy6619 82 GYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRD 114 (230)
Q Consensus 82 g~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~ 114 (230)
.-..|++-.+.+.+-.+++++|+.||||..|++
T Consensus 15 ~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~ 47 (1001)
T KOG0942|consen 15 AAEERHKREEERKQEKNAVKVQSFWRGFRVRHN 47 (1001)
T ss_pred HHHHHHhhHHHHHHhccchHHHHHHHHHHHHHH
Confidence 345566666666666789999999999999985
No 170
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.67 E-value=2.3e+02 Score=19.78 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+|....++-+.+...+...||.++..||.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4788888899999999999999988888863
No 171
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.54 E-value=3.2e+02 Score=21.54 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=23.6
Q ss_pred hcccccccccHHH-HHHHHHHHHHHHHHHHHHH
Q psy6619 172 INPLLNVHRTDQE-LQAKSEELEALKSKLEKLE 203 (230)
Q Consensus 172 vkpll~~~~~~~e-~~~~e~e~~~l~e~l~~~e 203 (230)
.+.|+....|+.+ +.++..|+..|+.+|.+..
T Consensus 77 LnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 77 YNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666676666 9999999999988776553
No 172
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.41 E-value=1.9e+02 Score=21.78 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
...+..++++.+.+++++......++.+++.|++.
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444455555555555555555555555544
No 173
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.39 E-value=2.8e+02 Score=20.75 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++...-.+..++.+++.+.+.++...++.+.++.++..+.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567788888888888888888888888888888887654
No 174
>KOG4797|consensus
Probab=26.34 E-value=2.2e+02 Score=21.50 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
.||.+-|++++.+++++-..||.++.-|
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544333
No 175
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.29 E-value=1.6e+02 Score=23.43 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~el 209 (230)
.+.++..+.+++..++.+...++..+..+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666655555544433
No 176
>PF15294 Leu_zip: Leucine zipper
Probab=26.29 E-value=2.5e+02 Score=24.77 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEV-------ERNLLKQDNTRLET 218 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~-------~~~ele~~~~~le~ 218 (230)
.|+..+.+|++.|++++...+. +..+++..+++|..
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888899999988887766 44555555555554
No 177
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=26.18 E-value=1.3e+02 Score=21.87 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERN 207 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ 207 (230)
+.++++|++.|++++.+.+..-.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~kea 26 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEA 26 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888887766443
No 178
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.13 E-value=3e+02 Score=21.00 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~el 209 (230)
..+++.|+++.+++|++++.+..+-
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~H 51 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDH 51 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555443
No 179
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=26.11 E-value=28 Score=21.08 Aligned_cols=7 Identities=71% Similarity=1.540 Sum_probs=4.1
Q ss_pred hhcCCCC
Q psy6619 224 EFLLPWN 230 (230)
Q Consensus 224 ~~~~~~~ 230 (230)
+-|||||
T Consensus 33 ~~LLPwn 39 (39)
T PF13817_consen 33 DELLPWN 39 (39)
T ss_pred HHhCCCC
Confidence 3466776
No 180
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=3.2e+02 Score=21.58 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
..++.+.-+++.++.+.+.+++.+....++.+.+..++...
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777776666665544
No 181
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=26.07 E-value=4.2e+02 Score=22.66 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=48.9
Q ss_pred HHHHHHhhcccccccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q psy6619 165 WWRLYLKINPLLNVHRTDQELQAKSEELEALKSK------LEKLEVERNLLKQDNTRLETKTKIREFLLP 228 (230)
Q Consensus 165 w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~------l~~~e~~~~ele~~~~~le~~~~~~~~~~~ 228 (230)
....|.-|+|=+....++.++..++..+.-+..- -....+....+|+.++.+-+++.+++...|
T Consensus 129 f~~~y~~I~Psl~I~~~~~~v~~v~s~i~yl~~~~~~~~~~~~~~~~l~~le~~l~~lF~~~k~d~~dps 198 (232)
T PF09577_consen 129 FLSHYELIRPSLTIDRPPEQVQRVDSHISYLERLRFQQLDQKEVQEALEQLEEDLQKLFDGVKEDEADPS 198 (232)
T ss_pred HHHHHHHhcchhhccCCHHHHHHHHHHHHHHHHhhhcccChHHHHHHHHHHHHHHHHHhCcccccccccc
Confidence 3457888999999999999999999999887752 234556677777788888777777766544
No 182
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=26.02 E-value=1.9e+02 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNL--LKQDNTRLE 217 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~e--le~~~~~le 217 (230)
-.|-..+..|+++|+.+++++|+++.. +.++++-++
T Consensus 38 r~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~d 75 (420)
T PF07407_consen 38 RMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETND 75 (420)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 345677888888999999888887765 555555443
No 183
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.89 E-value=2.2e+02 Score=19.27 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
-.++-++.|.+.+.........++..+..|.+++.
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 184
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.72 E-value=1.8e+02 Score=28.46 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.-+.++..++.++..|+.+|+......++|+.+++.++.
T Consensus 471 ~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 471 RKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999998888874
No 185
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=25.69 E-value=1.8e+02 Score=18.41 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 197 SKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 197 e~l~~~e~~~~ele~~~~~l 216 (230)
.++..++..-..|...+..|
T Consensus 32 ~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 186
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.61 E-value=2.2e+02 Score=19.26 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
+..+...++.+..++...+..+.+...+..+++++++
T Consensus 12 e~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 12 ETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555555555544
No 187
>PRK09039 hypothetical protein; Validated
Probab=25.48 E-value=2.3e+02 Score=25.49 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 187 AKSEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~el 209 (230)
.++.++..++++....+....++
T Consensus 155 ~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 155 ALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 188
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.36 E-value=2.4e+02 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLE 203 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e 203 (230)
..++...+.+++.++++++...
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 189
>KOG4010|consensus
Probab=25.13 E-value=1.8e+02 Score=24.08 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
|+.+.|+||..|+.=|..-+.+-.||..+
T Consensus 52 EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 52 ELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888887777777777754
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.05 E-value=3.3e+02 Score=22.47 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
+..+.++++.+..++..+.........++.++..++.++...
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677777777777777777777777777776666665543
No 191
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.77 E-value=2.8e+02 Score=20.69 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~el 209 (230)
+++.....+++.++..+.+..++.+.+
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 87 ERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 192
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.63 E-value=2.2e+02 Score=21.12 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
|-.....-+...+++++.++.+..+||.+++
T Consensus 60 EFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 60 EFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333444444555554444444444443
No 193
>PF14645 Chibby: Chibby family
Probab=24.56 E-value=3e+02 Score=20.80 Aligned_cols=40 Identities=28% Similarity=0.131 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
...+.+.+++|+.-|+-+++-+-..+.+...+..-+|+++
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999988888888888887777764
No 194
>PRK14011 prefoldin subunit alpha; Provisional
Probab=24.54 E-value=1.4e+02 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLP 228 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~~~~ 228 (230)
++.....+++.+...+..+.....++.+-...|+.--...+.|.|
T Consensus 11 ~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVP 55 (144)
T PRK14011 11 ALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIP 55 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEE
Confidence 356677778888888888888888888888777754455666665
No 195
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.40 E-value=1.7e+02 Score=28.70 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
...++++..+.+++.+..+++++++++.+++++...
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666655443
No 196
>KOG0377|consensus
Probab=24.25 E-value=2e+02 Score=27.30 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Q psy6619 96 DVAVRCIQRNVRKFMDVRD---WSWWRLYLKI 124 (230)
Q Consensus 96 ~~A~~~IQ~~~R~~~~rr~---~~w~rl~~~v 124 (230)
..||+.||+.+|+|.+|.. ..-|..|+.+
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 4699999999999998763 2244455544
No 197
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=24.15 E-value=2.5e+02 Score=22.61 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHhh
Q psy6619 186 QAKSEELEALKSKLEKL--EVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~--e~~~~ele~~~~~le~~~~~~~ 224 (230)
.-.+.|++.|+++|.+. ...+.+|+..+..|++++..+.
T Consensus 59 d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~ 99 (168)
T PF06102_consen 59 DYREKEIKELKKQLKKTKDPEEREELKRELQRMESQLKARK 99 (168)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
No 198
>KOG0250|consensus
Probab=24.11 E-value=2.4e+02 Score=29.59 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=31.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 175 LLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 175 ll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.....-.+.++.+++.|...++.++..++..+.++|..++.++.++
T Consensus 653 ~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~ 698 (1074)
T KOG0250|consen 653 GVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKL 698 (1074)
T ss_pred cccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445667777777777777777777777777777666666554
No 199
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.02 E-value=3.1e+02 Score=20.41 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++...-++..++.+.+.+.+.+....++.+++..+.+.+.
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356668888888889999999999998888888888877653
No 200
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=24.01 E-value=3.3e+02 Score=22.38 Aligned_cols=37 Identities=35% Similarity=0.434 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+....+.++.|..++.++...-.-.|.++..||+|+.
T Consensus 115 ~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 115 LQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555555543
No 201
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.81 E-value=2.7e+02 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
..+..+..+++.+..+...++..+.....+++++.++|...
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666888888888888888888888888888888888754
No 202
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.72 E-value=2.8e+02 Score=27.21 Aligned_cols=40 Identities=38% Similarity=0.575 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+.++.++++++..+..+++..+...+.+...+..++++..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555544444444444444433
No 203
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=23.61 E-value=2.8e+02 Score=19.83 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
-+.+++.++.+-..|-++|.+.+.+-..+|.-..++..++
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL 76 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRL 76 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666667777776666666666555554443
No 204
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.46 E-value=2.7e+02 Score=24.81 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
.++.+++++++.+...++.......++++.+.+++......+
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 205
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.34 E-value=6.7e+02 Score=24.07 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLE 200 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~ 200 (230)
.|+..+|+|++.|+++..
T Consensus 337 ~eie~kEeei~~L~~~~d 354 (622)
T COG5185 337 SEIELKEEEIKALQSNID 354 (622)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 345555555555554443
No 206
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.30 E-value=2.9e+02 Score=23.96 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
......++.++..++..+......+.+++.++..|.+++.
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 4557788888888888888888888888888888887664
No 207
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.26 E-value=2.8e+02 Score=19.64 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+.++|..+..+-+.+.-+.-...|++++...|.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554544555555544444443
No 208
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.26 E-value=3.3e+02 Score=21.01 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
..++.++..++.+....+.....++
T Consensus 83 ~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 83 EELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 209
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.14 E-value=2.6e+02 Score=19.26 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+-..+..+..|++.|+++-..+.....+|+..+..|.+..
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666666667776666666544
No 210
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=23.11 E-value=3.3e+02 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
++..+++|-..+.+++++-.+.+.||..+..
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~v 32 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQV 32 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776665443
No 211
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=2.9e+02 Score=25.17 Aligned_cols=44 Identities=36% Similarity=0.459 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHhhhcCC
Q psy6619 183 QELQAKSEELEALKSKLEK---------LEVERNLLKQDNTRLETKTKIREFLLP 228 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~---------~e~~~~ele~~~~~le~~~~~~~~~~~ 228 (230)
.+..+..++++.+++-+.. .+.+..+++.++..||+++.+ .|||
T Consensus 53 ~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~--lLlP 105 (363)
T COG0216 53 REYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKI--LLLP 105 (363)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCC
No 212
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.95 E-value=2.8e+02 Score=20.50 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
....++.|+..|..++..+......++..+..+
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666655544
No 213
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.93 E-value=1.4e+02 Score=21.75 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLP 228 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~~~~ 228 (230)
++.+.+.++.........++|..+..+++++..-=.-+|
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355666666666666667777777666666655444333
No 214
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.91 E-value=2.1e+02 Score=20.55 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
-+++.=..+|+|+..+.+.+...|++...|...
T Consensus 33 Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 33 LSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred CChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 477778889999999999999999988888763
No 215
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.86 E-value=4.3e+02 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=16.2
Q ss_pred CchHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy6619 56 SVLPQLEAERDKKLSSRV--IEFQARCRGYL 84 (230)
Q Consensus 56 g~l~~LE~~R~~~l~~~~--~~iQ~~~Rg~l 84 (230)
|.....++.-+..+..++ +.+.+.=||.|
T Consensus 55 gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlL 85 (189)
T PF10211_consen 55 GICPVREELYSQCFDELIRQVTIDCPERGLL 85 (189)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCcHHHhHH
Confidence 455555555555555554 33455557777
No 216
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.80 E-value=3e+02 Score=19.82 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQ 211 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~ 211 (230)
...+..++.+|++.++.+....+++.+.++.
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778888888888877777776666654
No 217
>KOG4797|consensus
Probab=22.31 E-value=2.8e+02 Score=20.94 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVER 206 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~ 206 (230)
+|+.-+.+.+.+|.++...+|.+-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554444444433
No 218
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.29 E-value=3.8e+02 Score=21.62 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 179 HRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 179 ~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.-+++|-.++..||.++++++..+..-...-|....+|..++
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346777777777787777777777666666666666666554
No 219
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=22.26 E-value=2.3e+02 Score=18.39 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLE 203 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e 203 (230)
.+.+++++.++++++.+.+
T Consensus 3 ~~~~~~~i~a~~e~l~~~~ 21 (64)
T PF12644_consen 3 YATKEDEIMATKEELEELE 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666554
No 220
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.14 E-value=3.1e+02 Score=20.66 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+..+.-.+.+++.+..+....++...+++.++.+|-..
T Consensus 77 ~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 77 KERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44466667777777777777777777777777776554
No 221
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.05 E-value=3.4e+02 Score=20.18 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
+.++.+.+.|+..|.-.-.+++.+...+...+.
T Consensus 39 e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 39 EQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444455554444444444
No 222
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.98 E-value=3.6e+02 Score=20.50 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.++...-+++.++.+.+.+...+....++.+.++.+.+.+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666665544
No 223
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.96 E-value=2.8e+02 Score=19.20 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
.++|..++.+-+-+.-++-...|+.++.++|
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3344444444444444444444444444433
No 224
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.94 E-value=3.7e+02 Score=21.48 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLE---------VERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e---------~~~~ele~~~~~le~~~~~ 222 (230)
.+..=..++++|++.|++++.... .+...+|.++..|+.++..
T Consensus 31 lT~~G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 31 VTEAGLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRT 82 (160)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 466668888888888887776552 3444566667777766553
No 225
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=21.83 E-value=4.6e+02 Score=21.66 Aligned_cols=9 Identities=22% Similarity=0.947 Sum_probs=0.0
Q ss_pred hHHHHHHHH
Q psy6619 114 DWSWWRLYL 122 (230)
Q Consensus 114 ~~~w~rl~~ 122 (230)
.|.|+-+|.
T Consensus 35 ~yGWyil~~ 43 (190)
T PF06936_consen 35 SYGWYILFG 43 (190)
T ss_dssp ---------
T ss_pred HhCHHHHHH
Confidence 345666543
No 226
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.82 E-value=2.2e+02 Score=20.30 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQ 211 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~ 211 (230)
-..++.|+..|+++|+++..-+.-||.
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~ 36 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEK 36 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888877777774
No 227
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.61 E-value=3.4e+02 Score=20.69 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.++..++.+++.++.++...=.-..|=.+...+|...
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3345555555555555554433333333333333333
No 228
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=21.60 E-value=42 Score=24.71 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=10.8
Q ss_pred ccccccccchHHHHhh
Q psy6619 6 KEALSNAVISTQIVKK 21 (230)
Q Consensus 6 raGyP~R~~~~~F~~R 21 (230)
|+|||.=+|-.+|+-=
T Consensus 13 RaGYP~GvP~~Dy~PL 28 (96)
T PF11829_consen 13 RAGYPEGVPPTDYVPL 28 (96)
T ss_dssp HHH-TT-B-HHHHHHH
T ss_pred HccCCCCCCCCccHHH
Confidence 7999999999997654
No 229
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.43 E-value=2.9e+02 Score=23.96 Aligned_cols=42 Identities=29% Similarity=0.506 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
...++....+|+..++..+..+......++.....|+..+.+
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 444455556666666666666655555555555555555543
No 230
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.40 E-value=2.3e+02 Score=17.90 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy6619 204 VERNLLKQDNTRLE 217 (230)
Q Consensus 204 ~~~~ele~~~~~le 217 (230)
.+..+||++...|.
T Consensus 26 ~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 26 EQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 231
>KOG4001|consensus
Probab=21.33 E-value=2.5e+02 Score=23.70 Aligned_cols=10 Identities=50% Similarity=0.730 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy6619 191 ELEALKSKLE 200 (230)
Q Consensus 191 e~~~l~e~l~ 200 (230)
.++.++.+++
T Consensus 207 ~ia~~k~K~e 216 (259)
T KOG4001|consen 207 KIAQLKKKLE 216 (259)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 232
>PTZ00420 coronin; Provisional
Probab=21.25 E-value=1.1e+02 Score=29.64 Aligned_cols=51 Identities=8% Similarity=-0.052 Sum_probs=33.7
Q ss_pred HHHHhhcccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy6619 167 RLYLKINPLLNVHRTDQELQAKSEELEALKSK-LEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 167 ~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~-l~~~e~~~~ele~~~~~le 217 (230)
+.+.+.+|..++...-..-++..+|.+.++.+ ...++....+.+.+..+|.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (568)
T PTZ00420 396 RITKKYKFVPQSFNSIIIGENYTSKRTSIIRQFTKKFTFFKKGEHNDGFSSV 447 (568)
T ss_pred hhhhhhcccccccccccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 34555667666655444444666677777777 7777777777777777776
No 233
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.22 E-value=3.3e+02 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+.+.++.++++.+..++.+.+.....++.++..+
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333
No 234
>KOG0162|consensus
Probab=21.14 E-value=1e+02 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q psy6619 98 AVRCIQRNVRKFMDVRDWSWWR 119 (230)
Q Consensus 98 A~~~IQ~~~R~~~~rr~~~w~r 119 (230)
-|..||+.||.|.+|+.+--++
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~r 719 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMR 719 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999654333
No 235
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=21.04 E-value=1.3e+02 Score=23.90 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6619 187 AKSEELEALKSKLEKLEVERN 207 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ 207 (230)
.-+.||+.|+++|.+.|...+
T Consensus 128 ~~~~eL~qLq~rL~qTE~~m~ 148 (152)
T PF15361_consen 128 ITDYELAQLQERLAQTERAME 148 (152)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555443
No 236
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.88 E-value=3.6e+02 Score=20.07 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
....++-++.+.++++..+.+..+++..++.++.++.
T Consensus 75 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 75 RKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677888888888888888888887777664
No 237
>KOG3478|consensus
Probab=20.61 E-value=3.9e+02 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
..++-...++...|.....+++++....
T Consensus 76 kRlefI~~Eikr~e~~i~d~q~e~~k~R 103 (120)
T KOG3478|consen 76 KRLEFISKEIKRLENQIRDSQEEFEKQR 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433333
No 238
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.41 E-value=4.6e+02 Score=22.31 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
+++....++..|..-+.+.+.++.+.+...
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 239
>KOG3859|consensus
Probab=20.39 E-value=3.5e+02 Score=24.30 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLE-KLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~-~~e~~~~ele~~~~~le~~~ 220 (230)
.+.++.+.|+|+.+--+.+. ...++..++|++...||+++
T Consensus 353 kE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~ 393 (406)
T KOG3859|consen 353 KEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEV 393 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555444443 23345556666666666654
No 240
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.37 E-value=3.7e+02 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERN 207 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ 207 (230)
+.+++..+..|+.+++..+....
T Consensus 115 v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 115 LAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 241
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.03 E-value=3.7e+02 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 179 HRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 179 ~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
..+.+.+.+++++++++++++++.+++.+++-.....
T Consensus 211 ~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~ 247 (646)
T PRK05771 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247 (646)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888887777777777776654433
Done!