Query psy6619
Match_columns 230
No_of_seqs 240 out of 1339
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:46:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kk8_A Myosin heavy chain, str 100.0 8.4E-31 2.9E-35 255.4 12.9 127 2-128 700-837 (837)
2 1i84_S Smooth muscle myosin he 100.0 5.5E-30 1.9E-34 259.0 17.6 139 2-140 713-862 (1184)
3 2dfs_A Myosin-5A; myosin-V, in 100.0 5.2E-29 1.8E-33 248.9 18.7 158 2-163 691-883 (1080)
4 4anj_A Unconventional myosin-V 99.9 2.8E-25 9.5E-30 220.5 5.2 135 2-140 698-843 (1052)
5 1w7j_A Myosin VA; motor protei 99.8 2.8E-20 9.7E-25 180.6 7.4 93 2-94 691-792 (795)
6 1wdc_A Scallop myosin; calcium 99.8 1.8E-18 6.1E-23 117.8 7.6 64 65-128 1-64 (64)
7 2bl0_A Major plasmodial myosin 99.7 1.6E-17 5.3E-22 112.7 7.7 61 68-128 2-62 (63)
8 1g8x_A Myosin II heavy chain f 99.7 5.9E-16 2E-20 153.9 16.8 111 2-112 685-811 (1010)
9 2ycu_A Non muscle myosin 2C, a 99.6 1.2E-16 4.1E-21 158.8 6.0 110 2-114 680-805 (995)
10 2bl0_A Major plasmodial myosin 99.6 1.9E-15 6.4E-20 102.4 7.9 59 97-177 5-63 (63)
11 1wdc_A Scallop myosin; calcium 99.6 4.1E-15 1.4E-19 101.0 8.2 58 97-176 7-64 (64)
12 2v26_A Myosin VI; calmodulin-b 99.5 1.3E-14 4.4E-19 141.0 3.5 82 2-84 694-784 (784)
13 1w9i_A Myosin II heavy chain; 99.4 1.5E-14 5.1E-19 139.9 -0.1 73 2-74 685-767 (770)
14 4db1_A Myosin-7; S1DC, cardiac 99.4 2.3E-14 8E-19 138.9 0.8 69 2-70 702-782 (783)
15 1lkx_A Myosin IE heavy chain; 99.4 6.1E-14 2.1E-18 134.6 1.6 68 2-69 617-696 (697)
16 1kk8_A Myosin heavy chain, str 99.1 1.9E-10 6.5E-15 112.4 10.4 58 97-176 780-837 (837)
17 2dfs_A Myosin-5A; myosin-V, in 99.0 1.6E-08 5.5E-13 101.5 18.5 92 70-167 816-910 (1080)
18 1i84_S Smooth muscle myosin he 98.9 3.6E-09 1.2E-13 107.3 11.5 103 97-221 793-895 (1184)
19 2ix7_C Myosin-5A; contractIle 98.9 3.7E-09 1.3E-13 69.9 6.8 45 68-115 3-47 (58)
20 1n2d_C IQ2 and IQ3 motifs from 98.9 7.1E-09 2.4E-13 65.8 6.6 44 70-114 3-46 (48)
21 3bas_A Myosin heavy chain, str 98.4 7E-07 2.4E-11 64.0 6.6 52 170-221 1-52 (89)
22 2ix7_C Myosin-5A; contractIle 98.2 5.6E-06 1.9E-10 54.3 7.4 46 97-167 6-51 (58)
23 1n2d_C IQ2 and IQ3 motifs from 98.2 5.9E-06 2E-10 52.0 6.7 44 97-163 4-47 (48)
24 3gn4_A Myosin-VI; unconvention 98.0 0.00019 6.4E-09 55.7 12.8 52 82-133 30-83 (148)
25 2fxo_A Myosin heavy chain, car 97.8 2.2E-05 7.6E-10 59.9 5.3 52 171-222 1-52 (129)
26 4anj_A Unconventional myosin-V 97.3 0.00019 6.6E-09 71.7 5.9 61 97-181 776-836 (1052)
27 3gn4_A Myosin-VI; unconvention 96.0 0.21 7.4E-06 38.5 12.7 35 142-176 43-78 (148)
28 2kxw_B Sodium channel protein 94.5 0.034 1.2E-06 30.4 3.0 18 96-113 6-23 (27)
29 2l53_B CAM, voltage-gated sodi 93.8 0.066 2.3E-06 30.2 3.3 18 96-113 6-23 (31)
30 3bas_A Myosin heavy chain, str 93.3 1.5 5E-05 30.7 10.7 86 123-222 2-88 (89)
31 2kxw_B Sodium channel protein 89.4 0.31 1.1E-05 26.5 2.7 20 143-162 5-24 (27)
32 2l53_B CAM, voltage-gated sodi 86.2 0.64 2.2E-05 26.1 2.8 20 143-162 5-24 (31)
33 2eqb_B RAB guanine nucleotide 81.7 5.9 0.0002 28.1 6.9 41 182-222 18-58 (97)
34 3nmd_A CGMP dependent protein 80.5 9.5 0.00033 25.6 7.2 36 185-220 28-63 (72)
35 2w6b_A RHO guanine nucleotide 78.8 8.2 0.00028 24.3 6.0 37 182-218 16-52 (56)
36 1ic2_A Tropomyosin alpha chain 77.6 11 0.00037 25.6 7.1 43 181-223 32-74 (81)
37 1wt6_A Myotonin-protein kinase 75.7 12 0.00042 25.5 6.7 41 182-222 30-70 (81)
38 2yy0_A C-MYC-binding protein; 74.1 3.1 0.00011 26.2 3.2 36 180-215 16-51 (53)
39 2fxo_A Myosin heavy chain, car 72.6 10 0.00035 28.1 6.4 42 180-221 3-44 (129)
40 1fxk_A Prefoldin; archaeal pro 70.3 14 0.00046 26.0 6.4 53 169-221 51-103 (107)
41 2zqm_A Prefoldin beta subunit 69.1 7.8 0.00027 27.7 5.0 54 169-222 56-109 (117)
42 2oqq_A Transcription factor HY 68.0 8.1 0.00028 23.0 3.8 18 193-210 13-30 (42)
43 1g6u_A Domain swapped dimer; d 67.5 13 0.00045 21.8 4.7 26 180-205 17-42 (48)
44 2w83_C C-JUN-amino-terminal ki 66.9 9.9 0.00034 25.7 4.6 38 184-221 38-75 (77)
45 1ci6_A Transcription factor AT 64.9 23 0.00078 22.8 6.1 17 186-202 33-49 (63)
46 2l5g_B Putative uncharacterize 64.7 19 0.00065 21.4 5.0 27 185-211 11-37 (42)
47 3hnw_A Uncharacterized protein 64.5 23 0.00079 26.6 6.9 31 190-220 103-133 (138)
48 3u1c_A Tropomyosin alpha-1 cha 64.1 29 0.00098 24.5 7.0 35 182-216 36-70 (101)
49 1g6u_A Domain swapped dimer; d 63.7 20 0.00068 21.1 5.3 25 190-214 20-44 (48)
50 1w7j_A Myosin VA; motor protei 62.8 10 0.00035 36.9 5.7 20 97-116 769-788 (795)
51 3hnw_A Uncharacterized protein 62.5 26 0.0009 26.3 6.9 41 182-222 88-128 (138)
52 2yy0_A C-MYC-binding protein; 62.5 20 0.00069 22.4 5.2 33 189-221 18-50 (53)
53 2akf_A Coronin-1A; coiled coil 62.1 17 0.00059 19.8 4.5 27 195-221 4-30 (32)
54 1kd8_A GABH AIV, GCN4 acid bas 59.7 17 0.00059 20.8 4.0 29 193-221 4-32 (36)
55 3mq7_A Bone marrow stromal ant 58.9 30 0.001 25.3 6.3 43 182-224 70-112 (121)
56 3u59_A Tropomyosin beta chain; 58.2 42 0.0014 23.5 7.0 35 182-216 36-70 (101)
57 4dck_A Sodium channel protein 57.4 10 0.00035 29.6 3.9 20 95-114 129-148 (168)
58 3nmd_A CGMP dependent protein 56.6 41 0.0014 22.4 6.4 38 180-217 30-67 (72)
59 2lw1_A ABC transporter ATP-bin 54.8 33 0.0011 23.5 5.9 33 181-213 54-86 (89)
60 2jee_A YIIU; FTSZ, septum, coi 54.8 48 0.0016 22.6 6.4 37 184-220 28-64 (81)
61 2ocy_A RAB guanine nucleotide 54.6 28 0.00096 26.7 5.9 35 186-220 54-88 (154)
62 2dgc_A Protein (GCN4); basic d 54.0 34 0.0012 22.0 5.4 34 188-221 28-61 (63)
63 1go4_E MAD1 (mitotic arrest de 54.0 28 0.00097 24.7 5.4 33 190-222 12-44 (100)
64 3o0z_A RHO-associated protein 53.5 49 0.0017 25.7 7.2 43 182-224 96-138 (168)
65 1deb_A APC protein, adenomatou 53.2 37 0.0013 20.9 6.6 37 184-220 11-47 (54)
66 1kd8_B GABH BLL, GCN4 acid bas 51.1 32 0.0011 19.6 4.6 28 193-220 4-31 (36)
67 3he5_A Synzip1; heterodimeric 50.7 36 0.0012 20.0 6.4 41 181-221 8-48 (49)
68 1wt6_A Myotonin-protein kinase 49.2 58 0.002 22.1 6.1 17 186-202 48-64 (81)
69 3qh9_A Liprin-beta-2; coiled-c 48.7 43 0.0015 22.8 5.4 25 191-215 27-51 (81)
70 3c3f_A Alpha/beta peptide with 48.0 36 0.0012 19.2 4.1 27 193-219 4-30 (34)
71 2z5i_A TM, general control pro 48.0 47 0.0016 20.5 6.0 36 181-216 10-45 (52)
72 1l8d_A DNA double-strand break 47.5 65 0.0022 22.5 6.7 37 185-221 5-41 (112)
73 2wt7_A Proto-oncogene protein 47.1 53 0.0018 20.9 5.9 30 182-211 29-58 (63)
74 1gd2_E Transcription factor PA 46.6 60 0.0021 21.4 5.9 40 182-221 28-67 (70)
75 1x79_B RAB GTPase binding effe 46.3 81 0.0028 22.8 7.1 28 185-212 8-35 (112)
76 2lw1_A ABC transporter ATP-bin 46.0 32 0.0011 23.6 4.6 12 186-197 32-43 (89)
77 2v66_B Nuclear distribution pr 45.2 62 0.0021 23.4 6.1 38 187-224 67-104 (111)
78 3cvf_A Homer-3, homer protein 44.7 18 0.00062 24.6 3.0 28 183-210 13-40 (79)
79 3dvk_B Voltage-dependent R-typ 44.3 17 0.00058 18.8 2.1 15 98-112 8-22 (23)
80 3cve_A Homer protein homolog 1 44.2 68 0.0023 21.3 6.5 27 183-209 14-40 (72)
81 3rrk_A V-type ATPase 116 kDa s 44.2 29 0.00099 29.7 5.1 45 185-229 94-138 (357)
82 1jnm_A Proto-oncogene C-JUN; B 43.9 59 0.002 20.5 6.1 29 192-220 24-52 (62)
83 4e61_A Protein BIM1; EB1-like 43.6 80 0.0027 22.6 6.4 34 183-216 18-51 (106)
84 3c3g_A Alpha/beta peptide with 43.1 43 0.0015 18.7 4.7 27 193-219 3-29 (33)
85 1hjb_A Ccaat/enhancer binding 42.4 50 0.0017 22.7 5.1 35 181-215 41-75 (87)
86 3q8t_A Beclin-1; autophagy, AT 42.0 70 0.0024 22.3 5.9 38 182-219 10-47 (96)
87 1ic2_A Tropomyosin alpha chain 41.7 74 0.0025 21.2 5.9 40 180-219 38-77 (81)
88 4emc_A Monopolin complex subun 41.7 86 0.0029 24.8 6.9 40 182-221 33-72 (190)
89 3swk_A Vimentin; cytoskeleton, 41.7 50 0.0017 22.5 5.0 37 185-221 44-80 (86)
90 3na7_A HP0958; flagellar bioge 41.6 70 0.0024 26.1 6.9 35 183-217 32-66 (256)
91 3ol1_A Vimentin; structural ge 41.6 69 0.0024 23.2 6.1 36 186-221 65-100 (119)
92 3l4f_A RHO guanine nucleotide 41.3 69 0.0024 20.6 6.2 41 182-222 13-53 (61)
93 2oxj_A Hybrid alpha/beta pepti 41.1 44 0.0015 18.8 3.7 26 193-218 4-29 (34)
94 1l8d_A DNA double-strand break 40.9 90 0.0031 21.8 6.8 39 183-221 64-102 (112)
95 3a7p_A Autophagy protein 16; c 39.8 1E+02 0.0035 23.5 6.9 36 183-218 89-124 (152)
96 3azd_A Short alpha-tropomyosin 39.2 11 0.00039 21.7 1.1 31 190-220 4-34 (37)
97 2bni_A General control protein 38.2 54 0.0018 18.5 3.7 26 193-218 4-29 (34)
98 2yko_A LINE-1 ORF1P; RNA-bindi 38.1 64 0.0022 26.5 5.9 41 180-220 10-50 (233)
99 1t2k_D Cyclic-AMP-dependent tr 37.2 77 0.0026 19.9 6.5 21 185-205 31-51 (61)
100 3cvf_A Homer-3, homer protein 36.6 97 0.0033 20.9 6.4 38 181-218 18-55 (79)
101 2zqm_A Prefoldin beta subunit 36.6 90 0.0031 21.8 6.0 36 182-217 76-111 (117)
102 2f3y_B Voltage-dependent L-typ 36.1 22 0.00074 18.8 1.8 16 146-161 4-19 (26)
103 2wq1_A General control protein 35.4 60 0.002 18.1 4.4 26 193-218 3-28 (33)
104 3q8t_A Beclin-1; autophagy, AT 34.8 1.1E+02 0.0039 21.2 6.3 18 185-202 27-44 (96)
105 3u1c_A Tropomyosin alpha-1 cha 34.0 1.2E+02 0.0041 21.2 6.8 40 181-220 56-95 (101)
106 4g1a_A AQ-C16C19 peptide; heli 33.6 16 0.00054 19.7 1.0 23 195-217 5-27 (32)
107 2l5g_B Putative uncharacterize 33.2 77 0.0026 18.7 5.5 25 181-205 14-38 (42)
108 2wt7_B Transcription factor MA 32.9 1.2E+02 0.0042 20.9 6.6 39 182-220 47-85 (90)
109 2wuj_A Septum site-determining 32.7 76 0.0026 19.8 4.4 26 194-219 31-56 (57)
110 1zme_C Proline utilization tra 32.5 46 0.0016 21.0 3.5 18 185-202 46-63 (70)
111 1nkp_B MAX protein, MYC proto- 32.4 61 0.0021 21.7 4.2 29 185-213 49-77 (83)
112 2jee_A YIIU; FTSZ, septum, coi 32.1 1.2E+02 0.0041 20.6 6.9 34 185-218 8-41 (81)
113 1ci6_A Transcription factor AT 32.1 99 0.0034 19.7 6.7 31 190-220 23-53 (63)
114 1gk7_A Vimentin; intermediate 32.0 76 0.0026 18.3 5.4 33 189-221 5-37 (39)
115 1jnm_A Proto-oncogene C-JUN; B 31.6 71 0.0024 20.2 4.2 33 185-217 24-56 (62)
116 4e61_A Protein BIM1; EB1-like 31.4 1.1E+02 0.0038 21.8 5.6 40 183-222 11-50 (106)
117 2e7s_A RAB guanine nucleotide 31.3 22 0.00076 26.7 1.9 47 181-227 65-119 (135)
118 1gmj_A ATPase inhibitor; coile 31.1 1.3E+02 0.0043 20.6 5.8 29 190-218 51-79 (84)
119 4etp_A Kinesin-like protein KA 31.1 65 0.0022 28.4 5.3 38 182-219 23-60 (403)
120 1lwu_C Fibrinogen gamma chain; 30.8 1.1E+02 0.0036 26.3 6.4 36 185-220 21-56 (323)
121 2be6_D Voltage-dependent L-typ 30.3 39 0.0013 19.4 2.4 18 145-162 12-29 (37)
122 2wt7_A Proto-oncogene protein 30.3 1.1E+02 0.0036 19.4 6.1 36 184-219 24-59 (63)
123 1nkp_B MAX protein, MYC proto- 30.2 1E+02 0.0034 20.5 5.0 37 185-221 42-78 (83)
124 1fxk_C Protein (prefoldin); ar 30.0 1.5E+02 0.0053 21.2 6.9 42 180-221 85-126 (133)
125 2eqb_B RAB guanine nucleotide 29.9 64 0.0022 22.8 4.0 38 181-218 24-61 (97)
126 2wt7_B Transcription factor MA 29.8 1E+02 0.0035 21.4 5.0 35 182-216 54-88 (90)
127 1joc_A EEA1, early endosomal a 29.7 1.6E+02 0.0055 21.3 6.6 38 180-217 15-52 (125)
128 4fm3_A Uncharacterized hypothe 29.6 1.5E+02 0.005 20.9 5.8 44 180-223 54-97 (98)
129 2k48_A Nucleoprotein; viral pr 29.5 1.2E+02 0.004 21.7 5.3 26 181-206 33-58 (107)
130 3mq9_A Bone marrow stromal ant 29.1 1.1E+02 0.0038 26.9 6.6 39 185-223 431-469 (471)
131 4dck_A Sodium channel protein 28.7 45 0.0015 25.9 3.3 22 142-163 128-149 (168)
132 2aze_A Transcription factor DP 28.6 1.5E+02 0.0052 22.6 6.2 34 181-214 3-36 (155)
133 4emc_A Monopolin complex subun 28.3 1.3E+02 0.0045 23.7 6.0 40 181-220 18-57 (190)
134 2bnx_A Diaphanous protein homo 28.3 5.8 0.0002 35.0 -2.1 39 181-219 331-369 (386)
135 1go4_E MAD1 (mitotic arrest de 28.1 1.6E+02 0.0053 20.8 5.8 35 181-215 10-44 (100)
136 3gp4_A Transcriptional regulat 28.0 1.8E+02 0.0061 21.4 6.8 34 186-219 84-117 (142)
137 1fxk_A Prefoldin; archaeal pro 27.7 1E+02 0.0036 21.1 5.0 30 185-214 74-103 (107)
138 3pp5_A BRK1, protein brick1; t 27.5 78 0.0027 21.1 3.9 28 188-215 43-70 (73)
139 2efr_A General control protein 27.2 2E+02 0.0068 21.9 6.8 20 185-204 100-119 (155)
140 2hy6_A General control protein 26.9 90 0.0031 17.5 4.0 26 194-219 5-30 (34)
141 1dip_A Delta-sleep-inducing pe 26.9 55 0.0019 21.9 3.0 27 191-217 16-42 (78)
142 3u59_A Tropomyosin beta chain; 26.7 1.6E+02 0.0055 20.4 6.6 40 181-220 56-95 (101)
143 3kin_B Kinesin heavy chain; mo 26.6 1.2E+02 0.004 21.9 5.2 18 203-220 95-112 (117)
144 1t6f_A Geminin; coiled-coil, c 26.4 95 0.0033 17.7 4.5 9 187-195 18-26 (37)
145 3qh9_A Liprin-beta-2; coiled-c 26.2 1.6E+02 0.0053 20.0 5.8 44 178-221 35-78 (81)
146 3oja_B Anopheles plasmodium-re 26.1 1.7E+02 0.0059 26.4 7.4 37 185-221 539-575 (597)
147 1fmh_A General control protein 26.0 85 0.0029 16.9 4.2 10 208-217 19-28 (33)
148 1ykh_B RNA polymerase II holoe 25.8 1.6E+02 0.0056 21.6 5.9 39 181-219 90-128 (132)
149 3m91_A Proteasome-associated A 25.8 1.2E+02 0.0041 18.6 6.9 39 182-220 8-46 (51)
150 2zdi_C Prefoldin subunit alpha 25.7 1.8E+02 0.0063 21.5 6.4 42 180-221 95-136 (151)
151 2xus_A Breast cancer metastasi 25.3 1.2E+02 0.0042 18.5 5.2 19 181-199 11-29 (49)
152 4etp_A Kinesin-like protein KA 25.2 1.7E+02 0.0058 25.7 6.9 37 184-220 18-54 (403)
153 1yke_B RNA polymerase II holoe 25.2 1.5E+02 0.005 22.5 5.7 41 181-221 90-130 (151)
154 1zxa_A CGMP-dependent protein 25.1 1.5E+02 0.005 19.4 5.9 30 185-214 20-49 (67)
155 3s4r_A Vimentin; alpha-helix, 24.7 1.7E+02 0.0059 20.1 5.7 33 189-221 55-87 (93)
156 2w83_C C-JUN-amino-terminal ki 24.4 70 0.0024 21.5 3.2 32 184-215 45-76 (77)
157 2v71_A Nuclear distribution pr 24.3 1.8E+02 0.0061 23.0 6.1 33 185-217 90-122 (189)
158 3m9b_A Proteasome-associated A 24.3 87 0.003 25.9 4.4 40 182-221 53-92 (251)
159 3vkg_A Dynein heavy chain, cyt 24.0 1.3E+02 0.0045 34.0 6.9 17 5-21 1754-1773(3245)
160 1wlq_A Geminin; coiled-coil; 2 23.9 1.8E+02 0.006 19.8 6.4 32 185-216 33-64 (83)
161 3m48_A General control protein 23.8 1E+02 0.0036 17.2 3.5 22 196-217 6-27 (33)
162 2aze_B Transcription factor E2 23.3 2E+02 0.0068 20.3 6.5 42 184-225 7-48 (106)
163 1nlw_A MAD protein, MAX dimeri 23.2 1.3E+02 0.0046 20.0 4.6 27 185-211 49-75 (80)
164 1r8e_A Multidrug-efflux transp 23.2 2.1E+02 0.0071 22.9 6.8 38 182-219 78-115 (278)
165 1gu4_A CAAT/enhancer binding p 23.0 1.7E+02 0.0057 19.6 5.0 30 181-210 41-70 (78)
166 3p8c_E Probable protein brick1 22.9 1.2E+02 0.0039 20.4 4.0 23 190-212 45-67 (75)
167 3oja_B Anopheles plasmodium-re 22.8 1.8E+02 0.0062 26.2 6.9 37 183-219 544-580 (597)
168 3pp5_A BRK1, protein brick1; t 22.7 1.4E+02 0.0046 19.9 4.4 21 185-205 47-67 (73)
169 1uo4_A General control protein 22.7 1.1E+02 0.0038 17.1 3.6 23 195-217 6-28 (34)
170 3htk_A Structural maintenance 21.5 1.5E+02 0.0051 18.2 6.8 38 183-220 19-56 (60)
171 2efr_A General control protein 21.5 2.7E+02 0.0093 21.1 6.8 33 185-217 72-104 (155)
172 3mud_A DNA repair protein XRCC 21.5 2.9E+02 0.0098 21.5 6.7 34 182-215 134-167 (175)
173 3a2a_A Voltage-gated hydrogen 21.2 1.6E+02 0.0055 18.4 6.0 43 179-221 7-49 (58)
174 3mq7_A Bone marrow stromal ant 21.1 2.4E+02 0.0083 20.4 6.6 31 189-219 70-100 (121)
175 3o0z_A RHO-associated protein 21.0 2.9E+02 0.01 21.3 7.1 37 183-219 111-151 (168)
176 3ghg_A Fibrinogen alpha chain; 20.6 2.5E+02 0.0087 25.8 7.0 39 185-223 119-157 (562)
177 3vkg_A Dynein heavy chain, cyt 20.5 1.6E+02 0.0054 33.3 6.7 24 187-210 2018-2041(3245)
178 4dzn_A Coiled-coil peptide CC- 20.1 1.2E+02 0.004 16.4 4.8 17 185-201 4-20 (33)
179 3viq_B Mating-type switching p 20.1 89 0.0031 21.4 3.1 21 189-209 7-27 (85)
180 3a7p_A Autophagy protein 16; c 20.0 2.9E+02 0.01 20.9 7.0 38 182-219 95-132 (152)
No 1
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=8.4e-31 Score=255.42 Aligned_cols=127 Identities=32% Similarity=0.588 Sum_probs=114.5
Q ss_pred ccccccccccccchHHHHhhhC---C--------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---A--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS 70 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~ 70 (230)
+||+|+|||+|++|++|++||. + +++..|..++..++.+.++|++|+||||||+|+++.||++|+..+.
T Consensus 700 iri~r~Gfp~R~~f~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~ 779 (837)
T 1kk8_A 700 IRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS 779 (837)
T ss_dssp ----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHH
Confidence 6899999999999999999941 1 3345677888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy6619 71 SRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLL 128 (230)
Q Consensus 71 ~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll 128 (230)
..++.||++||||++|++|.+++.++.|+++||++||+|+++++||||++|.+|+|||
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~~kvkpll 837 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 837 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHhhhccCC
Confidence 9999999999999999999999888899999999999999999999999999999985
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.97 E-value=5.5e-30 Score=259.03 Aligned_cols=139 Identities=39% Similarity=0.636 Sum_probs=122.2
Q ss_pred ccccccccccccchHHHHhhhC---C--------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---A--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS 70 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~ 70 (230)
+||+|+|||+|++|.+|+.||. + +++..|..++..+++..+.|++|+||||||+|+++.||++|+..+.
T Consensus 713 iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l~ 792 (1184)
T 1i84_S 713 IRICRQGFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKIT 792 (1184)
T ss_dssp HHHHHHSCCEEEEHHHHHHHTTTTCTTTSCSSCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTH
T ss_pred HHhHhhcCcccccHHHHHHHHHHhccccCCcCCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHHH
Confidence 6899999999999999999952 1 2234566777778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHH
Q psy6619 71 SRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAK 140 (230)
Q Consensus 71 ~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~ 140 (230)
..++.||++||||++|++|.+++.++.|+++||++||+|+.+++|+||+++.+++|++.......++..+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L 862 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAK 862 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999888889999999999999999999999999999998766555554433
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.96 E-value=5.2e-29 Score=248.94 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=120.0
Q ss_pred ccccccccccccchHHHHhhhC---C------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---A------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSR 72 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~~ 72 (230)
+||+|+|||+|++|++|+.||. + +++..|..++..+....++|++|+||||||+|+++.||++|+..+...
T Consensus 691 iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~a 770 (1080)
T 2dfs_A 691 IRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAA 770 (1080)
T ss_dssp HHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHH
T ss_pred HhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999952 2 334466777787877889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh-------------------------HHHHH-HHHHHhh
Q psy6619 73 VIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRD-------------------------WSWWR-LYLKINP 126 (230)
Q Consensus 73 ~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~-------------------------~~w~r-l~~~v~~ 126 (230)
++.||+.+|||++|++|.+++ .|+++||+++|||.+|+. +.-.+ ....++.
T Consensus 771 a~~IQa~~Rg~l~Rk~~~~~r---~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs 847 (1080)
T 2dfs_A 771 CIRIQKTIRGWLMRKKYMRMR---RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQA 847 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776 466666666666666442 22111 2333445
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhch
Q psy6619 127 LLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDW 163 (230)
Q Consensus 127 ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w 163 (230)
.+++..++.++.... ...|+..||+.+|+|+.++.+
T Consensus 848 ~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 848 LLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHY 883 (1080)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665442 235677777777777777665
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.91 E-value=2.8e-25 Score=220.50 Aligned_cols=135 Identities=8% Similarity=0.054 Sum_probs=113.0
Q ss_pred ccccccccccccchHHHHhhh---CC------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSR 72 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~~ 72 (230)
+||+|+|||+|++|++|++|| .+ +++..|..++..++++.++|++|+||||||+|+++.||++|+..+..+
T Consensus 698 irI~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~ 777 (1052)
T 4anj_A 698 LDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 777 (1052)
T ss_dssp HHHTTTCCCEEEEHHHHHHHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHHhcCCCCcCcHHHHHHHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHH
Confidence 689999999999999999994 22 445567888899998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHH
Q psy6619 73 VIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRK--FMDVRDWSWWRLYLKINPLLNVHRTDQELQAK 140 (230)
Q Consensus 73 ~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~--~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~ 140 (230)
++.+|+ +|||++|++|.+++ .|++.||...|+ |...+.|+||++|.+|+|++...++..+.+++
T Consensus 778 ~~~iq~-~r~~l~r~~~~k~~---~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~~~r~~ 843 (1052)
T 4anj_A 778 AELVKR-VNHWLICSRWKKVQ---WCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDVNGHKF 843 (1052)
T ss_dssp HHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEETTEEE
T ss_pred HHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHHHhhhh
Confidence 887775 79999999999988 455555553333 55666899999999999999877776655544
No 5
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.80 E-value=2.8e-20 Score=180.63 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=84.4
Q ss_pred ccccccccccccchHHHHhhh---CC------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSR 72 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~~ 72 (230)
+||+|+|||+|++|++|++|| .+ +++..|..++..+....++|++|+||||||+|+++.||++|+..+...
T Consensus 691 iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~ 770 (795)
T 1w7j_A 691 IRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAA 770 (795)
T ss_dssp HHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccccHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHHHH
Confidence 689999999999999999994 22 344567788888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHh
Q psy6619 73 VIEFQARCRGYLARKHLAKLKV 94 (230)
Q Consensus 73 ~~~iQ~~~Rg~l~r~~~~~~~~ 94 (230)
++.||++||||++|++|.+++.
T Consensus 771 ~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 771 CIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884
No 6
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=99.76 E-value=1.8e-18 Score=117.79 Aligned_cols=64 Identities=50% Similarity=0.972 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy6619 65 RDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLL 128 (230)
Q Consensus 65 R~~~l~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll 128 (230)
||+.++..++.+|+.+|||++|+.|.++..++.|+.+||+|+|+|+.+++||||++|.+|+|||
T Consensus 1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l~~kikPll 64 (64)
T 1wdc_A 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 64 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhcCC
Confidence 5789999999999999999999999999988899999999999999999999999999999985
No 7
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=99.72 E-value=1.6e-17 Score=112.74 Aligned_cols=61 Identities=36% Similarity=0.862 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q psy6619 68 KLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINPLL 128 (230)
Q Consensus 68 ~l~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll 128 (230)
.++..++.+|+.+|||++|+.|.++..++.|+.+||+|+|+|+.+++||||++|.+|+|||
T Consensus 2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~L~~kikPLL 62 (63)
T 2bl0_A 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLFAKARPLL 62 (63)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhcc
Confidence 5778899999999999999999999988899999999999999999999999999999996
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.68 E-value=5.9e-16 Score=153.94 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=85.6
Q ss_pred ccccccccccccchHHHHhhh---CC-------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA-------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSS 71 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~-------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~ 71 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..++.+.++|++|+||||||+|+++.||++|+..+..
T Consensus 685 iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~ 764 (1010)
T 1g8x_A 685 IRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGS 764 (1010)
T ss_dssp HHHHTTSCCEEEEHHHHHHHHGGGSTTCCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHhCCCCCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHH
Confidence 689999999999999999994 21 33456778888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhH------HHHHHHHHHHHHHHHHH
Q psy6619 72 RVIEFQARCRGYLARKHLAKLKVQ------DVAVRCIQRNVRKFMDV 112 (230)
Q Consensus 72 ~~~~iQ~~~Rg~l~r~~~~~~~~~------~~A~~~IQ~~~R~~~~r 112 (230)
+++.+|-..++...+..+...... ..++..||..+++|...
T Consensus 765 ~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~f 811 (1010)
T 1g8x_A 765 EQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 811 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 999999766655444333222111 12467777777766443
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.63 E-value=1.2e-16 Score=158.85 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=88.8
Q ss_pred ccccccccccccchHHHHhhh---CC--------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKL---SA--------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLS 70 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~---~~--------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~ 70 (230)
+||+|+|||+|++|++|+.|| .+ +++..|..++..++.+.++|++|+||||||+|+++.||++|+..+.
T Consensus 680 iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~ 759 (995)
T 2ycu_A 680 IRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQT 759 (995)
T ss_dssp HHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSCCCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhh
Confidence 689999999999999999994 11 3455666777777777889999999999999999999999999988
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q psy6619 71 SR-----VIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRD 114 (230)
Q Consensus 71 ~~-----~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~ 114 (230)
.. +..++.|+++..++..+.+.. .++..||+.+++|..++.
T Consensus 760 ~~eYe~~a~~Ll~WIr~k~a~l~~r~~~---~sl~~IQ~~ir~f~~fr~ 805 (995)
T 2ycu_A 760 KSDYLKRANELVQWINDKQASLESRDFG---DSIESVQSFMNAHKEYKK 805 (995)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCSCHHHH---HHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHH
Confidence 65 445666677666655555544 688999999999877664
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=99.61 E-value=1.9e-15 Score=102.43 Aligned_cols=59 Identities=27% Similarity=0.708 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccc
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLL 176 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll 176 (230)
..++.||+.+|||++++.+ ++...+..|+.+||+|+|+|+++++||||+||+||||||
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~----------------------~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~L~~kikPLL 62 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHF----------------------RQAREKSVSARIIQDNIRAYLEFKNWAWWKLFAKARPLL 62 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHhhhcc
Confidence 5789999999999998742 234466789999999999999999999999999999998
Q ss_pred c
Q psy6619 177 N 177 (230)
Q Consensus 177 ~ 177 (230)
+
T Consensus 63 ~ 63 (63)
T 2bl0_A 63 V 63 (63)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=99.59 E-value=4.1e-15 Score=101.02 Aligned_cols=58 Identities=31% Similarity=0.732 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccc
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLL 176 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll 176 (230)
..++.||+.+|||++++.+ ++...+..|+.+||+|+|+|+.+++||||+||+||||||
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~----------------------~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l~~kikPll 64 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAY----------------------KKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhcCC
Confidence 5789999999999998742 234466789999999999999999999999999999986
No 12
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.47 E-value=1.3e-14 Score=140.99 Aligned_cols=82 Identities=7% Similarity=0.119 Sum_probs=67.3
Q ss_pred ccccccccccccchHHHHhhhC---------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSSR 72 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~~ 72 (230)
+||+|+|||+|++|++|++||. .+++..|..++..+++..++|++|+||||||+|+++.||.++.......
T Consensus 694 iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~ 773 (784)
T 2v26_A 694 LDLMQGGFPSRASFHELYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHL 773 (784)
T ss_dssp HHHHTSCCSEEEEHHHHHHHHGGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHH
T ss_pred HHHHHhcCCccccHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHH
Confidence 6899999999999999999952 2455678888889998889999999999999999999999876555444
Q ss_pred HHHHHHHHHHHH
Q psy6619 73 VIEFQARCRGYL 84 (230)
Q Consensus 73 ~~~iQ~~~Rg~l 84 (230)
.. +++.+||||
T Consensus 774 ~~-ii~~v~~wl 784 (784)
T 2v26_A 774 AE-LVKRVNHWL 784 (784)
T ss_dssp HH-HHHHHHHHC
T ss_pred HH-HHHHHHhhC
Confidence 33 446677774
No 13
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.42 E-value=1.5e-14 Score=139.91 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=33.4
Q ss_pred ccccccccccccchHHHHhhhC---C-------CCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS---A-------SPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKLSS 71 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~---~-------~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l~~ 71 (230)
+||+|+|||+|++|++|+.||. + +++..|..++..++++.++|++|+||||||+|+++.||++|+..+..
T Consensus 685 iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~ 764 (770)
T 1w9i_A 685 IRITRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDY 764 (770)
T ss_dssp HHHTTSSCCEEEESCC-----------------------------------CCCCCSSEEEECTTTTTC-----------
T ss_pred HHHHHhcCcccccHHHHHHHHHHhccccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHH
Confidence 6899999999999999999952 1 44556777888888888899999999999999999999999999998
Q ss_pred HHH
Q psy6619 72 RVI 74 (230)
Q Consensus 72 ~~~ 74 (230)
.++
T Consensus 765 ~~~ 767 (770)
T 1w9i_A 765 KDD 767 (770)
T ss_dssp ---
T ss_pred Hhc
Confidence 765
No 14
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.41 E-value=2.3e-14 Score=138.85 Aligned_cols=69 Identities=19% Similarity=0.304 Sum_probs=47.1
Q ss_pred ccccccccccccchHHHHhhhC------------CCCccchHHHHhHhccccccccCCcceeeeccCchHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS------------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSSVLPQLEAERDKKL 69 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~------------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g~l~~LE~~R~~~l 69 (230)
+||+|+|||+|++|++|++||. .+++..|..++..+++..++|++|+||||||+|+++.||++|++.|
T Consensus 702 iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l 781 (783)
T 4db1_A 702 IRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERL 781 (783)
T ss_dssp HHHHHTSCCEEEEC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC----
T ss_pred eeehhcCCCccCcHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHh
Confidence 6899999999999999999941 1345567778888888889999999999999999999999999887
Q ss_pred H
Q psy6619 70 S 70 (230)
Q Consensus 70 ~ 70 (230)
+
T Consensus 782 ~ 782 (783)
T 4db1_A 782 S 782 (783)
T ss_dssp -
T ss_pred c
Confidence 5
No 15
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.38 E-value=6.1e-14 Score=134.63 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=55.5
Q ss_pred ccccccccccccchHHHHhhhC-----------CCCccchHHHHhHhccccccccCCcceeeeccC-chHHHHHHHHHHH
Q psy6619 2 SEIVKEALSNAVISTQIVKKLS-----------ASPQRNHDLEYNHCAILMNRVLSPVFQIFFRSS-VLPQLEAERDKKL 69 (230)
Q Consensus 2 ~rI~raGyP~R~~~~~F~~R~~-----------~~~~~~~~~~~~~~~~~~~~~q~G~TKVFfr~g-~l~~LE~~R~~~l 69 (230)
+||+|+|||+|++|++|+.||. .+++..|..++..++...++|++|+||||||+| +++.||++|+.+|
T Consensus 617 iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 617 VRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp HHHHHHSCSBCCBSHHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred HHHHhcCCCccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 6899999999999999999942 245567788888888888999999999999996 8999999999875
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.11 E-value=1.9e-10 Score=112.44 Aligned_cols=58 Identities=31% Similarity=0.724 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccc
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLL 176 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll 176 (230)
.+++.||+.+|||++|+.+. +++.++.|+.+||+++|+|+++++|+||+||.||||||
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~----------------------k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~~kvkpll 837 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYK----------------------KLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 837 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHhhhccCC
Confidence 57899999999999998431 22355789999999999999999999999999999997
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.99 E-value=1.6e-08 Score=101.47 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHhhhhHhhhhhHHHHHHHHHHHH
Q psy6619 70 SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWR---LYLKINPLLNVHRTDQELQAKSVQDVA 146 (230)
Q Consensus 70 ~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~~w~r---l~~~v~~ll~~~~~~~e~~k~~~~~~a 146 (230)
...++.||+.+|||++|+.|.+++ .|++.||+.|||+.+|+.+.-.+ ....++..+++...+..+ .....|
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr---~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y---~~~~~a 889 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMR---DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY---HRTLKA 889 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHT---TTTHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence 456788888888888888888777 68888999999998888654333 233445555554444433 334579
Q ss_pred HHHHHhhhHHHHHHhchHHHH
Q psy6619 147 VRRIQRNVPKLMDVRDWSWWR 167 (230)
Q Consensus 147 ~~~IQ~~~R~~l~~r~w~w~~ 167 (230)
+..||+.+|++++++.+...+
T Consensus 890 ai~iQs~~R~~laRr~~~~Lk 910 (1080)
T 2dfs_A 890 IVYLQCCYRRMMAKRELKKLK 910 (1080)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765553
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.94 E-value=3.6e-09 Score=107.32 Aligned_cols=103 Identities=32% Similarity=0.527 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccc
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLL 176 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll 176 (230)
.+++.||+.||||++|+.|. ++..++.|+.+||+++|+|+.+++|+||+++.+++|++
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~----------------------k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl 850 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFA----------------------KRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLL 850 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 57899999999999998542 12345689999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 177 NVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 177 ~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
...+.+.++.+++++++.+++++...+..+.+++.++..++++..
T Consensus 851 ~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~ 895 (1184)
T 1i84_S 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN 895 (1184)
T ss_dssp CCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888888887776554
No 19
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.90 E-value=3.7e-09 Score=69.89 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhhH
Q psy6619 68 KLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDW 115 (230)
Q Consensus 68 ~l~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~~ 115 (230)
.+...++.||+.+|||++|+.|.+++ .|+++||+.||||.+++.+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r---~aai~IQ~~~Rg~~aR~~~ 47 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQ---RAAITVQRYVRGYQARCYA 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999988 7999999999999999854
No 20
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.85 E-value=7.1e-09 Score=65.79 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHhh
Q psy6619 70 SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRD 114 (230)
Q Consensus 70 ~~~~~~iQ~~~Rg~l~r~~~~~~~~~~~A~~~IQ~~~R~~~~rr~ 114 (230)
...++.||+.+||+++|+.|..++.. .|+++||+.||||.+++.
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~-~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKV-NCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHh
Confidence 45789999999999999999887743 489999999999999874
No 21
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=98.39 E-value=7e-07 Score=64.04 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=40.3
Q ss_pred HhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 170 LKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 170 ~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
++|||||++++++.++..+++++..+++.+++.+..+.+++.++..|.++..
T Consensus 1 ~kVKPLL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~ 52 (89)
T 3bas_A 1 GSHMPLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKN 52 (89)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999988877654
No 22
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.21 E-value=5.6e-06 Score=54.32 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHH
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWR 167 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~ 167 (230)
.|+++||++||||.+++.+. ....|+..||+.+|+|++++.+...+
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~-------------------------~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYL-------------------------CMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988431 23468999999999999998876543
No 23
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.9e-06 Score=52.04 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhch
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDW 163 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w 163 (230)
.|+++||+++|||++++.+.. .....|+..||+.+|+|++++.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~-----------------------~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND-----------------------EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhHHHHHhh
Confidence 589999999999999985321 12235899999999999998764
No 24
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=97.97 E-value=0.00019 Score=55.71 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=39.2
Q ss_pred HHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhhHhhhh
Q psy6619 82 GYLARKHL-AKLKVQDVAVRCIQRNVRKFMDVR-DWSWWRLYLKINPLLNVHRT 133 (230)
Q Consensus 82 g~l~r~~~-~~~~~~~~A~~~IQ~~~R~~~~rr-~~~w~rl~~~v~~ll~~~~~ 133 (230)
|.++-.++ .++..+..|++.||+++|||++++ +-|.+.++.++..|......
T Consensus 30 ~~lsvIKLknKI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~~~~~~ 83 (148)
T 3gn4_A 30 CSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKRLDK 83 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555 356778899999999999999998 55888999999888654433
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.82 E-value=2.2e-05 Score=59.94 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=48.2
Q ss_pred hhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 171 KINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 171 kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+|||||++++++.++..+++++..+++.+.+.+..+.+++.++..+.....+
T Consensus 1 ~vKPLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~ 52 (129)
T 2fxo_A 1 GSSPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKND 52 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999888877643
No 26
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=97.34 E-value=0.00019 Score=71.73 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHHhhcccc
Q psy6619 97 VAVRCIQRNVRKFMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLL 176 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~w~rl~~~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~l~~r~w~w~~l~~kvkpll 176 (230)
.++++|| .+|+|++++.|. +++ ....++..+|+ .+.|...+.|+||+||.+|+|||
T Consensus 776 ~~~~~iq-~~r~~l~r~~~~------k~~----------------~~a~~i~~~~r-~~~~r~~~~~~w~~l~~~v~pll 831 (1052)
T 4anj_A 776 HLAELVK-RVNHWLICSRWK------KVQ----------------WCSLSVIKLKN-KIKYRAEAVSKGEELFTGVVPIL 831 (1052)
T ss_dssp HHHHHHH-HHHHHHHHHHHH------HHH----------------HHHHHHHHHHH-HHHHHHHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHH-HHHHHHHHHHHH------HHH----------------HHHHHHHHHHH-HHHHHHHcchHHHHHHHhhhhhH
Confidence 4666777 579999988542 111 11223333334 44588889999999999999999
Q ss_pred ccccc
Q psy6619 177 NVHRT 181 (230)
Q Consensus 177 ~~~~~ 181 (230)
...+.
T Consensus 832 ~~~~~ 836 (1052)
T 4anj_A 832 VELDG 836 (1052)
T ss_dssp EEEEE
T ss_pred HHHHH
Confidence 76543
No 27
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.97 E-value=0.21 Score=38.47 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhHHHHHHhch-HHHHHHHhhcccc
Q psy6619 142 VQDVAVRRIQRNVPKLMDVRDW-SWWRLYLKINPLL 176 (230)
Q Consensus 142 ~~~~a~~~IQ~~~R~~l~~r~w-~w~~l~~kvkpll 176 (230)
-++.+++.||+++|+|++++.+ |-...+.+++.|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3567999999999999999765 7778888887665
No 28
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.52 E-value=0.034 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy6619 96 DVAVRCIQRNVRKFMDVR 113 (230)
Q Consensus 96 ~~A~~~IQ~~~R~~~~rr 113 (230)
..||++||++||+|+.++
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 368999999999998765
No 29
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=93.81 E-value=0.066 Score=30.23 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy6619 96 DVAVRCIQRNVRKFMDVR 113 (230)
Q Consensus 96 ~~A~~~IQ~~~R~~~~rr 113 (230)
..|+++||++||+|+.++
T Consensus 6 e~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 358999999999998775
No 30
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.26 E-value=1.5 Score=30.74 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHhhhhHhhhhhHHHHHHHHHHHHHHHHHhhhHHH-HHHhchHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHH
Q psy6619 123 KINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKL-MDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEK 201 (230)
Q Consensus 123 ~v~~ll~~~~~~~e~~k~~~~~~a~~~IQ~~~R~~-l~~r~w~w~~l~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~ 201 (230)
+|+|||++.+...++..+.... ..+..++-.- ..+.. +-.+ ...-..+-..+..++..+.+....
T Consensus 2 kVKPLL~~~~~eeEm~~~eeel---~~lke~l~k~e~~rke-----le~~------~~~l~~ek~~L~~ql~eaEe~~~~ 67 (89)
T 3bas_A 2 SHMPLLSIARQEEEMKEQLKQM---DKMKEDLAKTERIKKE-----LEEQ------NVTLLEQKNDLFGSMKQLEDKVEE 67 (89)
T ss_dssp --------CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHH------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6899999999998887653322 1222211100 00000 0000 001122222333335566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy6619 202 LEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 202 ~e~~~~ele~~~~~le~~~~~ 222 (230)
+.....++|.++..|++.+.+
T Consensus 68 L~~~K~eLE~~l~el~~rl~e 88 (89)
T 3bas_A 68 LLSKNYHLENEVARLKKLVGE 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 666777777777777776654
No 31
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=89.44 E-value=0.31 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHHHHHhc
Q psy6619 143 QDVAVRRIQRNVPKLMDVRD 162 (230)
Q Consensus 143 ~~~a~~~IQ~~~R~~l~~r~ 162 (230)
...|+.+||+.+|+|+.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999998754
No 32
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=86.24 E-value=0.64 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhHHHHHHhc
Q psy6619 143 QDVAVRRIQRNVPKLMDVRD 162 (230)
Q Consensus 143 ~~~a~~~IQ~~~R~~l~~r~ 162 (230)
...++.+||+.+|+|+.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999998754
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.74 E-value=5.9 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+.++...+.|+..|...+..+...+.+.|.....++.++.+
T Consensus 18 e~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 18 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777776666543
No 34
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.48 E-value=9.5 Score=25.55 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+.++++|+....+.+..++....+.++.+..|..++
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554443
No 35
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=78.79 E-value=8.2 Score=24.33 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
-.++..+..|+..|+.-++.++..+.+||.-+..+-+
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888889999999999999999999987766643
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.58 E-value=11 Score=25.60 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
.+....+.++++..|+.++...+.....+++.+.....++..-
T Consensus 32 ~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 32 AEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888777776543
No 37
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.71 E-value=12 Score=25.53 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
.+|+.+....+.....+|...+.+-.+|+..+..+++++.+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777788888888888888888888777765
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.13 E-value=3.1 Score=26.20 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
-+..++..+..|++.|+.++..+.+...++.+++..
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888888888888888776653
No 39
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.55 E-value=10 Score=28.07 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+|.......++++..+.+++.+.+......+.....|+.+++
T Consensus 3 KPLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~ 44 (129)
T 2fxo_A 3 SPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMV 44 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555443
No 40
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=70.28 E-value=14 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 169 YLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 169 ~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
|..|.|.+-....+.....+++..+.+...+..++.....++.++.+++..+-
T Consensus 51 y~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 51 YKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp EEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555667778888999999999999999999999999998887753
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=69.09 E-value=7.8 Score=27.72 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=40.7
Q ss_pred HHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 169 YLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 169 ~~kvkpll~~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
|..|.|.+-....+.....+++..+.+...+..++.....++.++.+++..+..
T Consensus 56 y~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 56 YKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp EEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555677788888888888888888888888888888888877643
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.05 E-value=8.1 Score=22.98 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLK 210 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele 210 (230)
+.|+....++|++.+-++
T Consensus 13 k~le~~naeLEervstLq 30 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 43
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=67.53 E-value=13 Score=21.84 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVE 205 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~ 205 (230)
-+.+|+..+|.|+++++.++..+...
T Consensus 17 fspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777766666666555443
No 44
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=66.86 E-value=9.9 Score=25.70 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+.++..|...+++++......+..++.++.+||+++.
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888889999999999999999999988888754
No 45
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.94 E-value=23 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKL 202 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~ 202 (230)
.+++.++..|+.++..+
T Consensus 33 ~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 33 KELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 46
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=64.69 E-value=19 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQ 211 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~ 211 (230)
+.+.+.|++..++++..++....+||+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.47 E-value=23 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.+++.+..+++++.....+++.+...||.++
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444443
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.14 E-value=29 Score=24.51 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+....+.++|+..|+.+++..+.....+++.+...
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554444444444444433
No 49
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=63.73 E-value=20 Score=21.07 Aligned_cols=25 Identities=44% Similarity=0.478 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
+|+.+++.+++.+|+....+.+++.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444443
No 50
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=62.77 E-value=10 Score=36.87 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q psy6619 97 VAVRCIQRNVRKFMDVRDWS 116 (230)
Q Consensus 97 ~A~~~IQ~~~R~~~~rr~~~ 116 (230)
.+++.||+.+|||++|+.|.
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~ 788 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYM 788 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999998643
No 51
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.46 E-value=26 Score=26.28 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+.|+..+..++..++.+++..+....++.++...|+.+++.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666553
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.46 E-value=20 Score=22.37 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..+.++|+.+.+.+..+..+|.+.+.++..++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888888888888888887765
No 53
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=62.11 E-value=17 Score=19.81 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 195 LKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 195 l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
|++++.++..--.++++.+..||+.+.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555666666666666553
No 54
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.71 E-value=17 Score=20.75 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+|.++.+.+.....+||.....|.+-+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 44555555555566666666666655443
No 55
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.90 E-value=30 Score=25.27 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
.+.+.+++.||+.|.++|++...+.+.+......+...+++.-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 3457888889999998888888888888777777766665543
No 56
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=58.20 E-value=42 Score=23.53 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+....+.++++..|+.++...+.....++..+...
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554444444444444433
No 57
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=57.35 E-value=10 Score=29.62 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy6619 95 QDVAVRCIQRNVRKFMDVRD 114 (230)
Q Consensus 95 ~~~A~~~IQ~~~R~~~~rr~ 114 (230)
...||++||++||.|..++.
T Consensus 129 e~~aA~~IQra~R~~~~r~~ 148 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRS 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44699999999999987763
No 58
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.56 E-value=41 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+..+++..+++.++.+..+|...+....+|..++..+.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667788888888888888888888888877776653
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.80 E-value=33 Score=23.45 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
+-..+..+..++..++.+|.....+|.+||+..
T Consensus 54 d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 54 PHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456788999999999999999999999988654
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.76 E-value=48 Score=22.62 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
|+.++.+++..|.++.+.....+..+...+..|.++.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555544
No 61
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.58 E-value=28 Score=26.74 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
...+.|+..|.+++..+...+.+.|.....++.++
T Consensus 54 ~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~El 88 (154)
T 2ocy_A 54 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 88 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444444
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.04 E-value=34 Score=22.03 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 188 KSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 188 ~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+.+.+..|..+...++..-.+|+..+..|.+.+.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555666666666666665554
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.98 E-value=28 Score=24.74 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
+++..+++++..++.....|.+..+.||.++.-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777778888888888888877765
No 64
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.51 E-value=49 Score=25.72 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
+..+..+.+|++.++..+.+.+.+...+.+++..||...+..+
T Consensus 96 q~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 96 QARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3347777788888888888888888888888888887766655
No 65
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=53.23 E-value=37 Score=20.94 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.+..+..|+..|+.+|+.--...+++|..-..|.+-+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 3667788899999999999889999988777776544
No 66
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.13 E-value=32 Score=19.60 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.+|+++.+.+-....+||.+...|.+.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4445555555555555666655555544
No 67
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=50.67 E-value=36 Score=20.02 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
-+.|+..++.|++.++.+--.-..-..-+|.....|..++.
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 35678888888888877765555555667777777766653
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.19 E-value=58 Score=22.15 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKL 202 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~ 202 (230)
++-+..+..|..++++.
T Consensus 48 ~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 48 REAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 69
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.73 E-value=43 Score=22.79 Aligned_cols=25 Identities=44% Similarity=0.452 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 191 ELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 191 e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
|+..|+-+++..+..+..+|.++++
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444433333
No 70
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.04 E-value=36 Score=19.16 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+|.++.+.+-....+||.....|.+-
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444555555555555566555555443
No 71
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=47.95 E-value=47 Score=20.53 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
++..+.+++.++..|++++.........+.+.+...
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 567788899999999988888777777666655543
No 72
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.49 E-value=65 Score=22.55 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+...++++..+.+++..+.....+++.++..++..+.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666655543
No 73
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.05 E-value=53 Score=20.91 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQ 211 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~ 211 (230)
+.++..++.++..|..++..+......|..
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555555544443
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.58 E-value=60 Score=21.39 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+.-+.++|.++..+......+...-..|...+..|..++.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555556666666655543
No 75
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=46.30 E-value=81 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
..++..+...|++.|+++.+.+.++|+.
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555543
No 76
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.97 E-value=32 Score=23.56 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKS 197 (230)
Q Consensus 186 ~~~e~e~~~l~e 197 (230)
.+++.+++.+..
T Consensus 32 e~LE~~i~~le~ 43 (89)
T 2lw1_A 32 EDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 77
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.21 E-value=62 Score=23.39 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~ 224 (230)
++|-.-...-..|+..+...+..=++..=||.++.+.+
T Consensus 67 DLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 67 DLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444445555544443
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.71 E-value=18 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
..+.+.+.++..|++++..++....+..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444444443
No 79
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=44.31 E-value=17 Score=18.80 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy6619 98 AVRCIQRNVRKFMDV 112 (230)
Q Consensus 98 A~~~IQ~~~R~~~~r 112 (230)
|+..||.++|.+..+
T Consensus 8 A~llI~d~~r~~k~r 22 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 788899999887654
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=44.24 E-value=68 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~el 209 (230)
.+-..+++.+..++..++........+
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444333333
No 81
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=44.22 E-value=29 Score=29.69 Aligned_cols=45 Identities=27% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCC
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLPW 229 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~~~~~ 229 (230)
+.+.++.+..+.+++...+.++.+++++...+++....-+-|.||
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 444555566666666666666666666666666663333344444
No 82
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.87 E-value=59 Score=20.54 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 192 LEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 192 ~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+..|..+...++..-.+|...+..|.+.+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 83
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=43.60 E-value=80 Score=22.61 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
.++.++..++..++..++..++.|.-|=.++...
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444444443
No 84
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.09 E-value=43 Score=18.72 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+|+++.+.+-....++|.....|.+-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555555666665555543
No 85
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.38 E-value=50 Score=22.75 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
...++..++.|+..|+.+++.++.+...|..-+.+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888887777776665544
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.00 E-value=70 Score=22.28 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+.++..+..+=+.+..+|...+.....+...+..++.+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E 47 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAE 47 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555444443
No 87
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.74 E-value=74 Score=21.25 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
..+.++..+...+..+.+.+.+.+....+...++...+..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888887777777777665543
No 88
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.73 E-value=86 Score=24.82 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++..++.|+++|+++++..+++....+..+..-.+-+.
T Consensus 33 ~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~ 72 (190)
T 4emc_A 33 SEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE 72 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 3446677788888888888777777777766655554443
No 89
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.69 E-value=50 Score=22.55 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
-...|.++..++..+....-.+.+||.++.+|.+++.
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999988764
No 90
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.64 E-value=70 Score=26.12 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
.++.+++++++.++..+........+++.....++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333333
No 91
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.59 E-value=69 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
...|.++..++..+....-.+.+||.++.+|.+++.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777776666677777777766666543
No 92
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=41.29 E-value=69 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
-.++.++..+.+.++.-++.+...++.+|.-+-.+-..+.+
T Consensus 13 kDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n~ 53 (61)
T 3l4f_A 13 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMND 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34677888899999999999999999999988877766544
No 93
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.08 E-value=44 Score=18.82 Aligned_cols=26 Identities=23% Similarity=0.283 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+|.++.+.+-...++|+.....|.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34444444455555555555555544
No 94
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.87 E-value=90 Score=21.78 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..+...+.++..+..++..+.....+++..+..++.++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888887777777765
No 95
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.83 E-value=1e+02 Score=23.47 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
+++..+..-++.+++++..+.-+.+.+|+++..+++
T Consensus 89 eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 89 EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 96
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=39.20 E-value=11 Score=21.73 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+++.+++.+++.++.+..++++....+..++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777766655
No 97
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=38.19 E-value=54 Score=18.47 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+|.++.+.+-....+++.....|.+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 98
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=38.14 E-value=64 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.+++.++++|+.++.+...-+..+.+...+|+.+.+|++.+
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666777777777777777777777777777777777654
No 99
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.21 E-value=77 Score=19.90 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVE 205 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~ 205 (230)
+..++.++..|..++..++.+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.59 E-value=97 Score=20.92 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+.+-..+++.+..++..++........+...++.+-+
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888777665555554444433
No 101
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.57 E-value=90 Score=21.83 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+.....++++++.+.+++...+....+++..+..+-
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777777777777776666543
No 102
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=36.08 E-value=22 Score=18.81 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=12.9
Q ss_pred HHHHHHhhhHHHHHHh
Q psy6619 146 AVRRIQRNVPKLMDVR 161 (230)
Q Consensus 146 a~~~IQ~~~R~~l~~r 161 (230)
|.-.||.++|.|..++
T Consensus 4 at~LIqdyfRkfkkrk 19 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRK 19 (26)
T ss_pred hhhhHHHHHHHHHHhH
Confidence 5678999999997764
No 103
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.37 E-value=60 Score=18.13 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 193 EALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 193 ~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+|+++.+++-....+++.+...|.+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 104
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=34.77 E-value=1.1e+02 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKL 202 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~ 202 (230)
+.+++.+-+.+..++...
T Consensus 27 L~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 334444444443333333
No 105
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.98 E-value=1.2e+02 Score=21.18 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.+.++...++.+.....+++..+....+.|..+..|.-++
T Consensus 56 lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 56 TEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777777776554
No 106
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=33.65 E-value=16 Score=19.72 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 195 LKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 195 l~e~l~~~e~~~~ele~~~~~le 217 (230)
|+.++..+|..-...|++...||
T Consensus 5 leqkiaaleqkcaaceqkiaale 27 (32)
T 4g1a_A 5 LEQKIAALEQKCAACEQKIAALE 27 (32)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444443
No 107
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.16 E-value=77 Score=18.74 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVE 205 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~ 205 (230)
-+.|+.+-++.+..++.++..+++.
T Consensus 14 VdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 14 VDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666665555543
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=32.86 E-value=1.2e+02 Score=20.95 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
..+...+|.++..|..+++.+..+..++...+..+..+.
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666665554
No 109
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.67 E-value=76 Score=19.81 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 194 ALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 194 ~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+.+.++.+..+..+|++++..++++
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444555555555555443
No 110
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=32.51 E-value=46 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKL 202 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~ 202 (230)
+..+++++..|+..+..+
T Consensus 46 ~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 111
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.41 E-value=61 Score=21.65 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDN 213 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~ 213 (230)
+..+..++..++++++.+......|+.++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 112
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.10 E-value=1.2e+02 Score=20.60 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
+.++|..+..+-+.++-++-...+++++...|.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333
No 113
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.09 E-value=99 Score=19.65 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
++...+..+.+.++..-.+|+.++..|+.++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 114
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=32.04 E-value=76 Score=18.35 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.++++.|-+.+.-+-..-..+|+....||.++.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888888888763
No 115
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.58 E-value=71 Score=20.15 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+..++.+...|..+-..+......|+..+..|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 116
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.43 E-value=1.1e+02 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~ 222 (230)
.++.....++.+|.+++..+......+|..+.=.=.|+-+
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444444443
No 117
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.31 E-value=22 Score=26.71 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhHhhhcC
Q psy6619 181 TDQELQAKSEELEALKSKLE--------KLEVERNLLKQDNTRLETKTKIREFLL 227 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~--------~~e~~~~ele~~~~~le~~~~~~~~~~ 227 (230)
++.+...++.|++.|...|= .....+..+|.++..|+..+.+.+-++
T Consensus 65 aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 65 AEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666665554442 333455666677777777776666554
No 118
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.13 E-value=1.3e+02 Score=20.61 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
+|+..-+++++.++........+++.|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444433
No 119
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.11 E-value=65 Score=28.42 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+.++.+++.+++.+.+++.+++..+..|-..+.+|...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 23 KEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45566777777777777777777777777666666543
No 120
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.77 E-value=1.1e+02 Score=26.35 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+...+.++..|++.+...+....+|++++..++.+.
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555556666666655543
No 121
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=30.30 E-value=39 Score=19.37 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.7
Q ss_pred HHHHHHHhhhHHHHHHhc
Q psy6619 145 VAVRRIQRNVPKLMDVRD 162 (230)
Q Consensus 145 ~a~~~IQ~~~R~~l~~r~ 162 (230)
-|.-.||.++|.|..++.
T Consensus 12 YatfLIQdyFRkfkkrke 29 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 477899999999988753
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.28 E-value=1.1e+02 Score=19.43 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+..++.+...|..+-..+......|+.....|...
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555443
No 123
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.21 E-value=1e+02 Score=20.53 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+..--+=+..|+++.+.++....++..+...|+.++.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666666666666666666666553
No 124
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.00 E-value=1.5e+02 Score=21.24 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++...-+++.++.+.+.+...+....++.+++..+++.+.
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667888888888888888888888888888888777664
No 125
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.92 E-value=64 Score=22.76 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~ 218 (230)
.+.++..+..++..-+..-...|..+..++..+.+|..
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555443
No 126
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.84 E-value=1e+02 Score=21.36 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+.+...+..+++.|+.+.......+..+..+...|
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888888888888888888877654
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=29.67 E-value=1.6e+02 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+.+.|+..+.+++..|+..+...+....++-.....|.
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 46777888888888888888877777776655544443
No 128
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=29.57 E-value=1.5e+02 Score=20.90 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
+...|-...+-++...+....+.+....+++..+..|.+++-++
T Consensus 54 r~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~~ 97 (98)
T 4fm3_A 54 RLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLGET 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55777888999999999999999999999999999999887654
No 129
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.53 E-value=1.2e+02 Score=21.66 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVER 206 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~ 206 (230)
+...+.++++|+...+.+|.-.....
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKL 58 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKL 58 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776666665443333
No 130
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.12 E-value=1.1e+02 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
...+|.+......+++.+|.+..+++.+++.++.++.+.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555666677777777777777776666553
No 131
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=28.73 E-value=45 Score=25.93 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhHHHHHHhch
Q psy6619 142 VQDVAVRRIQRNVPKLMDVRDW 163 (230)
Q Consensus 142 ~~~~a~~~IQ~~~R~~l~~r~w 163 (230)
....|+.+||+.+|.|+.++..
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~ 149 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSL 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4456999999999999877554
No 132
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.58 E-value=1.5e+02 Score=22.61 Aligned_cols=34 Identities=15% Similarity=0.050 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
+..++..+++|-..+.+++++-.+.+.||..+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQELILQQI 36 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887777777777777777775433
No 133
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.33 E-value=1.3e+02 Score=23.75 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
++..+.++..|+..|.++++..+.+.+.+.+++.+++...
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445666666666666666666666666666666665554
No 134
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=28.30 E-value=5.8 Score=35.03 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+.++.+.+.+..+++.+++++.+++.|+++++..+|.+
T Consensus 331 ~~~~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~ 369 (386)
T 2bnx_A 331 DKTKVEKSEAKATELEKKLDSELTARHELQVEMKKMEND 369 (386)
T ss_dssp -CTHHHHHHTTTCC-------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334455667777888899999999999999999888886
No 135
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.06 E-value=1.6e+02 Score=20.83 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
+.+++..+..+++.|+.+-..+..+...||.++..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888888888876644
No 136
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.02 E-value=1.8e+02 Score=21.36 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 186 ~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.-+++.++.+.+++..++..+..++..+..+++.
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444443
No 137
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.73 E-value=1e+02 Score=21.12 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
...++++++.+.+++...+....+++..+.
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 138
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=27.49 E-value=78 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 188 KSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 188 ~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
-+..+..+.++|+..|....=||.++.+
T Consensus 43 ce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 43 TRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666666666666554
No 139
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.24 E-value=2e+02 Score=21.88 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEV 204 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~ 204 (230)
+.+++.++..+.++|.....
T Consensus 100 v~kLEk~id~lEd~L~~~Ke 119 (155)
T 2efr_A 100 VTKLEKSIDDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444433333333
No 140
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.88 E-value=90 Score=17.52 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 194 ALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 194 ~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+|.++.+++-....+|+.....|.+-
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444445555555555555555443
No 141
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=26.87 E-value=55 Score=21.87 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 191 ELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 191 e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
|.+-|++++..++.+-+.||.++.-|.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 142
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.68 E-value=1.6e+02 Score=20.37 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
.+.++...++.+..+..+++..+....+.|..+.+|.-++
T Consensus 56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888888888888888888888777776554
No 143
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=26.63 E-value=1.2e+02 Score=21.85 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6619 203 EVERNLLKQDNTRLETKT 220 (230)
Q Consensus 203 e~~~~ele~~~~~le~~~ 220 (230)
.+..+.+.+.+..||+++
T Consensus 95 ~~~~~~L~~~i~~Le~el 112 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444443
No 144
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.43 E-value=95 Score=17.66 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy6619 187 AKSEELEAL 195 (230)
Q Consensus 187 ~~e~e~~~l 195 (230)
.+++|++.|
T Consensus 18 ~KdeeIa~L 26 (37)
T 1t6f_A 18 QKDNEIARL 26 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 145
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.15 E-value=1.6e+02 Score=20.00 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=23.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 178 VHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 178 ~~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+...+.|-.+-|..+.+-++++..+......=+..+..|.+++.
T Consensus 35 v~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 35 VEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33344444444555555555555555555555555555555543
No 146
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.05 E-value=1.7e+02 Score=26.35 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
.+.+++|...++..++..++...++.+++..+.+++.
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433
No 147
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=26.00 E-value=85 Score=16.93 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy6619 208 LLKQDNTRLE 217 (230)
Q Consensus 208 ele~~~~~le 217 (230)
.+|+....||
T Consensus 19 qleqevaqle 28 (33)
T 1fmh_A 19 QLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 148
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.82 E-value=1.6e+02 Score=21.59 Aligned_cols=39 Identities=5% Similarity=0.046 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
....+.++++|+..+.+++++.-++..++=+++..+-..
T Consensus 90 Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445588888888888888887766666666655555443
No 149
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.80 E-value=1.2e+02 Score=18.63 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+..+.++..++..|..+-+++...+.+..+++..|.+.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666665555555555555555555555554
No 150
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.70 E-value=1.8e+02 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 180 RTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 180 ~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
..++...-++..++.+.+.+...+....++.++...+++.+.
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667778888888888888888888888887777776654
No 151
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=25.33 E-value=1.2e+02 Score=18.52 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKL 199 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l 199 (230)
...++..+|.+...+++++
T Consensus 11 ~ld~l~~LEkqF~~LkEql 29 (49)
T 2xus_A 11 CVSEMLDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888877
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.18 E-value=1.7e+02 Score=25.69 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
+..+++++++.++.+++...+...+.|..+..|--++
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 153
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.15 E-value=1.5e+02 Score=22.46 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
....+.++++|+..+.+++++.-++..++=+++..+-..++
T Consensus 90 Q~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558889999999888888877777776666666655544
No 154
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.10 E-value=1.5e+02 Score=19.37 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNT 214 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~ 214 (230)
+..+++.+.+|+..+........+|...+.
T Consensus 20 i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 20 LMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444444443
No 155
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.65 E-value=1.7e+02 Score=20.06 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+.++..|+.++.....+...++..+..|.+.+.
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777766666655543
No 156
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.44 E-value=70 Score=21.48 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
|-..+..|+.++++..++.+.+..|+|+.++.
T Consensus 45 E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 45 EKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667889999999999999999999987764
No 157
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.28 E-value=1.8e+02 Score=22.95 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
+..+++++..+++....+.....++|..+..||
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444455555555555554444444444444444
No 158
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.26 E-value=87 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
+..+..++.++..|..+.+.+...++++..++..|.+++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666667776666666666666666666666666553
No 159
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.04 E-value=1.3e+02 Score=33.99 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=10.0
Q ss_pred cccccc--cc-cchHHHHhh
Q psy6619 5 VKEALS--NA-VISTQIVKK 21 (230)
Q Consensus 5 ~raGyP--~R-~~~~~F~~R 21 (230)
.++|++ ++ -.|.-|++|
T Consensus 1754 ~~~g~~~dt~~~l~~~Fi~r 1773 (3245)
T 3vkg_A 1754 QRNGLILDSEEELYKYFTSQ 1773 (3245)
T ss_dssp HHTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHH
Confidence 356653 33 247778888
No 160
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.88 E-value=1.8e+02 Score=19.84 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~l 216 (230)
+.+.=+|++.|.+.++..+.....+.+.+..|
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555554444444444444433
No 161
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.78 E-value=1e+02 Score=17.18 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6619 196 KSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 196 ~e~l~~~e~~~~ele~~~~~le 217 (230)
+++.+.+-..-.+|+.....|.
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333344444444444443
No 162
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.35 E-value=2e+02 Score=20.30 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy6619 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREF 225 (230)
Q Consensus 184 e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~~~ 225 (230)
.+..+..|++.|.++=..+......+.+.+..+.+......+
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~ 48 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 466777778877777777777777778888887776554443
No 163
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.21 E-value=1.3e+02 Score=20.02 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQ 211 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~ 211 (230)
+..++++...+.++.+.+..+-.+|..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333
No 164
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.18 E-value=2.1e+02 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
+.-..-+++..+.+.++++.++..+..++..+..++..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345566666666777777777777777666655543
No 165
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.04 E-value=1.7e+02 Score=19.58 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 181 TDQELQAKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 181 ~~~e~~~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
.+..+..++.|+..|+.+++.++.+...|.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777776655555443
No 166
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.87 E-value=1.2e+02 Score=20.37 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 190 EELEALKSKLEKLEVERNLLKQD 212 (230)
Q Consensus 190 ~e~~~l~e~l~~~e~~~~ele~~ 212 (230)
..+..+.++|+.+|....=||.+
T Consensus 45 ~KLa~ln~KL~~LEr~L~iLEAk 67 (75)
T 3p8c_E 45 SRLATLNEKLTALERRIEYIEAR 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 167
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.80 E-value=1.8e+02 Score=26.20 Aligned_cols=37 Identities=32% Similarity=0.375 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+..+++..++..++++....++...+.+++++++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 168
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=22.72 E-value=1.4e+02 Score=19.91 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVE 205 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~ 205 (230)
+..+++.+..++..+.-+|.+
T Consensus 47 La~ln~kL~~lE~~L~iLEAk 67 (73)
T 3pp5_A 47 LSDLNEKLTILDRQVDYLEAT 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 169
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.72 E-value=1.1e+02 Score=17.15 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 195 LKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 195 l~e~l~~~e~~~~ele~~~~~le 217 (230)
|+++.+.+-....++|.....|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444444443
No 170
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.50 E-value=1.5e+02 Score=18.16 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKT 220 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~ 220 (230)
..+.....++..++.++.+..+..+...+.+..++.++
T Consensus 19 ~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 19 EKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777776666666666666665543
No 171
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.47 E-value=2.7e+02 Score=21.12 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le 217 (230)
....+++++.|.+++...+.+-...|..+..|+
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555444444444444333333333
No 172
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.46 E-value=2.9e+02 Score=21.50 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTR 215 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~ 215 (230)
+..+.+++.++..|++++..+..+...+.+.+..
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777666666666555443
No 173
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.20 E-value=1.6e+02 Score=18.42 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6619 179 HRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221 (230)
Q Consensus 179 ~~~~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~ 221 (230)
++++..+.++.+-+..|-.+.+.++..=.+.|+....|-.-+.
T Consensus 7 tRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 7 TRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888877777777777665443
No 174
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.09 E-value=2.4e+02 Score=20.44 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 189 SEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
.+.++.|+.++..+.....+.+.+++.|...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555443
No 175
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.97 E-value=2.9e+02 Score=21.30 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy6619 183 QELQAKSEELEALKSKLEKLEVERNLLK----QDNTRLETK 219 (230)
Q Consensus 183 ~e~~~~e~e~~~l~e~l~~~e~~~~ele----~~~~~le~~ 219 (230)
....+...++..|.+++..+|+....+| -+++.+-.+
T Consensus 111 ~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456666777777777777777666666 445444433
No 176
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.59 E-value=2.5e+02 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6619 185 LQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~~~~~ 223 (230)
+.-+++++..--..+..++....++-.+|.+||..+.++
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555666666655543
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.46 E-value=1.6e+02 Score=33.34 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 187 AKSEELEALKSKLEKLEVERNLLK 210 (230)
Q Consensus 187 ~~e~e~~~l~e~l~~~e~~~~ele 210 (230)
+.+++++..+++|.+.++...+++
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le 2041 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALE 2041 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 178
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.12 E-value=1.2e+02 Score=16.37 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6619 185 LQAKSEELEALKSKLEK 201 (230)
Q Consensus 185 ~~~~e~e~~~l~e~l~~ 201 (230)
+..+..|+.+|+.++..
T Consensus 4 iaalkqeiaalkkeiaa 20 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAA 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 179
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.09 E-value=89 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6619 189 SEELEALKSKLEKLEVERNLL 209 (230)
Q Consensus 189 e~e~~~l~e~l~~~e~~~~el 209 (230)
+.+++.|+++..+++....++
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444333333333333
No 180
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.05 E-value=2.9e+02 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6619 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219 (230)
Q Consensus 182 ~~e~~~~e~e~~~l~e~l~~~e~~~~ele~~~~~le~~ 219 (230)
...+..+.+|+.+|+-++...+.....+++....|.+.
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677777777777777777777777766666554
Done!