RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6619
(230 letters)
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 65.9 bits (161), Expect = 2e-12
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKH-LAKLKVQDVAVRCIQRNVRKF 109
+FF++ VL LE RD KL + Q RG R+ L LK ++ IQ R
Sbjct: 726 VFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIK-KIQVIQHGFRLR 784
Query: 110 MDVRDWSWWRLYLKINPLLNVHRTD----------QELQAKSVQ---------------- 143
V WRL++K+ PLL++ + +LQ +
Sbjct: 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKA 844
Query: 144 DVAVRRIQRNVPKLMDVRDWSWWRLYLKINP-LLNVHRTDQELQAKSEELEALKSKLEKL 202
+V +++ R++ +YL+ + R QEL+ + + +LK +L
Sbjct: 845 EVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLEL 904
Query: 203 E 203
E
Sbjct: 905 E 905
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 33.0 bits (75), Expect = 0.10
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 129 NVHRTDQELQAKSVQDVAVR---RIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQEL 185
+V D EL K +++ VR + + VP+ MD++ Y ++ L +E
Sbjct: 99 DVEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLK-----EDYEELKEKLE--ELQKEK 151
Query: 186 QAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224
+ +ELE L+++ E+++ L+ +N+RLE K
Sbjct: 152 EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 32.0 bits (73), Expect = 0.13
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 7/112 (6%)
Query: 73 VIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMD-VRDWSWWRLYLKINPLLNVH 131
EF R L ++ D + ++ F D W LK+ PL
Sbjct: 43 TYEFVDRVAERY-GLPLVVVRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRAL 101
Query: 132 RTDQELQAKSVQDVAVRRIQ-RNVPKLMDVRDWSWWRLYLKINPLLNVHRTD 182
+ +RR + L V LK+NPLL+ D
Sbjct: 102 KELG----VVAWITGIRRDESARRALLPVVWTDDGKGGILKVNPLLDWTYED 149
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 31.5 bits (72), Expect = 0.20
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 175 LLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFL 226
L + + EE L+ +L +L+ E L+ +N RL+ + R FL
Sbjct: 117 LARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRWFL 168
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 29.9 bits (68), Expect = 0.26
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 172 INPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217
+N L ++ +QE+ A EL LK++ E+LE E LK D +E
Sbjct: 13 VNGLSAYYQLNQEIAALQAELAKLKAENEELEAEVKDLKSDPDYIE 58
>gnl|CDD|224705 COG1792, MreC, Cell shape-determining protein [Cell envelope
biogenesis, outer membrane].
Length = 284
Score = 31.2 bits (71), Expect = 0.39
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216
++L ++EEL+ ++LE+L E L+++N RL
Sbjct: 69 KDLALENEELKKELAELEQLLEEVESLEEENKRL 102
>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif. Short
calmodulin-binding motif containing conserved Ile and
Gln residues.
Length = 23
Score = 26.9 bits (61), Expect = 0.84
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 68 KLSSRVIEFQARCRGYLARKHL 89
+L+ I QA RGYLARK
Sbjct: 1 RLTRAAIIIQAAWRGYLARKRY 22
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif. Calmodulin-binding
motif.
Length = 21
Score = 26.9 bits (61), Expect = 0.94
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 73 VIEFQARCRGYLARKHL 89
I+ QA RGYLARK
Sbjct: 4 AIKIQAAWRGYLARKRY 20
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.7 bits (68), Expect = 1.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 180 RTDQELQAKSEELEALKSKLEKLEVE-RNLLKQDNTRLE-----TKTKIREFLL 227
+ ++EL+ K +ELE + +LEK E E L+++ LE T + +E LL
Sbjct: 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILL 160
>gnl|CDD|152704 pfam12269, zf-CpG_bind_C, CpG binding protein zinc finger C
terminal domain. This domain family is found in
eukaryotes, and is approximately 240 amino acids in
length. This domain is the zinc finger domain of a CpG
binding DNA methyltransferase protein. It contains a
CxxC motif which forms the zinc finger and binds to DNA.
Length = 236
Score = 29.0 bits (65), Expect = 1.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 177 NVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKI 222
QEL+ + +ELE + S+ ++L V+ N + D + +T I
Sbjct: 40 VARTRLQELERRHQELETIISRAKRLTVDENNEQDDADQEDTDLSI 85
>gnl|CDD|222255 pfam13600, DUF4140, N-terminal domain of unknown function
(DUF4140). This family is often found at the N-terminus
of its member proteins, with DUF4139, pfam13598, at the
C-terminus.
Length = 101
Score = 28.0 bits (63), Expect = 1.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 176 LNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221
++V R +A S L L+ +L LE E L+ + LE + K
Sbjct: 53 VSVRRDYLPDEATSPALAELEEELRALEDELAALEAEKEALEAQIK 98
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 29.0 bits (65), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 181 TDQELQAKSEELEALKSKLEKLEVE 205
EL+AK ELE L+++ L E
Sbjct: 392 PSSELEAKRRELEELEARAAALRAE 416
>gnl|CDD|222689 pfam14335, DUF4391, Domain of unknown function (DUF4391). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 220 and
257 amino acids in length.
Length = 221
Score = 28.4 bits (64), Expect = 2.3
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 179 HRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224
+E + E++E L+ ++ KL+ + KQ N ++E +I++
Sbjct: 171 KEDLKERVERLEQIEELEKEIAKLKKKLKKEKQFNRKVELNLEIKK 216
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 28.6 bits (64), Expect = 3.3
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 178 VHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224
+ + ++ E++AL SK++++ E ++Q+N LE + KI++
Sbjct: 279 IDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKK 325
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.5 bits (64), Expect = 3.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLP 228
++EL+ EL LK ++EKL L+ RLE + E L
Sbjct: 890 EEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 28.1 bits (63), Expect = 3.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 190 EELEALKSKLEKLEVERNLLKQDNTRLETKTK 221
EEL + L E LK DN +L K +
Sbjct: 100 EELRKQNQTISSLRRELESLKADNIKLYEKIR 131
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 27.9 bits (62), Expect = 4.1
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 171 KINPLLNVHRTDQ------ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224
+I PLL ++ + + K E LE L+ +LE+LE E++LL++ E K ++ E
Sbjct: 132 EILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEE 191
Query: 225 F 225
Sbjct: 192 L 192
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 28.3 bits (64), Expect = 4.2
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLET 218
++L+ K +LEA KLE+ E+ER LK + +L++
Sbjct: 18 RQLELKLRDLEAENEKLER-ELER--LKSELEKLKS 50
>gnl|CDD|233398 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase,
putative. This model represents a family of proteins in
Gram-positive bacteria. The N-terminal region of about
200 amino acids resembles the epsilon subunit of E. coli
DNA polymerase III and the homologous region of the
Gram-positive type DNA polymerase III alpha subunit. The
epsilon subunit contains an exonuclease domain. The
remainder of this protein family resembles a predicted
ATP-dependent helicase, the DNA damage-inducible protein
DinG of E. coli [DNA metabolism, DNA replication,
recombination, and repair].
Length = 850
Score = 28.2 bits (63), Expect = 4.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 174 PLLNVHRTDQELQAKSEELEALKSKLEKLE---VERNLLKQDNTRLETKTKIRE 224
N HR D + QA +E L L K+EKL +E+ L D E+ I+E
Sbjct: 140 THENPHRADSDAQATAELLLLLFEKMEKLPLDTLEQLLELSDQLLYESYDIIQE 193
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 27.4 bits (61), Expect = 5.2
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 190 EELEALKSKLEKLEVERNLLKQDNTRLET 218
E L++L S+ ++LEVE LL++DN RL T
Sbjct: 36 ENLDSLASENQELEVELELLREDNERLST 64
>gnl|CDD|218155 pfam04575, DUF560, Protein of unknown function (DUF560). Family of
hypothetical bacterial proteins.
Length = 301
Score = 27.6 bits (62), Expect = 5.4
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 15/56 (26%)
Query: 118 WRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKIN 173
R Y + N R D+E S+ + RD W + K+
Sbjct: 233 KRQYKDKDLFGNKKRKDKEYSV-SLS----------LWH----RDLHWLGITPKLT 273
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.7 bits (62), Expect = 6.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219
+QE + E LE L+ L LE E +K + LE +
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.7 bits (62), Expect = 6.2
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 184 ELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224
+L+ + +ELE LK ++E+LE E L+ +LE K + E
Sbjct: 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
Score = 27.7 bits (62), Expect = 6.6
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217
+EL+ K+EE E LK KL KL+ E LK++ +LE
Sbjct: 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 27.9 bits (62), Expect = 6.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 50 QIFFRSSVLPQLEAER 65
Q+FFR+ VL +LEA+R
Sbjct: 752 QVFFRAGVLSRLEAQR 767
>gnl|CDD|217433 pfam03223, V-ATPase_C, V-ATPase subunit C.
Length = 371
Score = 27.2 bits (61), Expect = 7.6
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 160 VRDWSW----WRLYLKINPLL-----NVHRTDQELQAKSEELEALKSKLEKLE 203
+ + W + + L+ V + D +L++KS E KS L LE
Sbjct: 102 LTRFQWDSAKYPTKQSLKELVDLLSKEVAQIDNDLRSKSAEYNNAKSNLAALE 154
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 26.9 bits (60), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRL 216
+L+ ++EEL+ +LE E L+ +N RL
Sbjct: 72 FDLREENEELKKELLELESRLQELEQLEAENARL 105
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 27.2 bits (61), Expect = 9.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 183 QELQAKSEELEALKSKLEKLEVERNLLKQ--DNTRLETKTKIREFLLP 228
++L+ E E L +LE+LE E LK+ ++ E K + + + P
Sbjct: 374 EQLEKLLETKEKLSEELEELEEELKELKEELESLYSEGKISVNKTIYP 421
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.133 0.395
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,391,507
Number of extensions: 1063461
Number of successful extensions: 1987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1908
Number of HSP's successfully gapped: 157
Length of query: 230
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 136
Effective length of database: 6,768,326
Effective search space: 920492336
Effective search space used: 920492336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)