RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6619
(230 letters)
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 107 bits (268), Expect = 8e-27
Identities = 38/78 (48%), Positives = 54/78 (69%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
+FF++ VL LE RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK++
Sbjct: 760 VFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWL 819
Query: 111 DVRDWSWWRLYLKINPLL 128
+R+W WW+LY K+ PLL
Sbjct: 820 VLRNWQWWKLYSKVKPLL 837
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 101 bits (252), Expect = 1e-24
Identities = 62/184 (33%), Positives = 98/184 (53%), Gaps = 15/184 (8%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
IFFR+ VL LE ERD K++ +I FQA+CRGYLARK AK + Q ++ CIQ NVR FM
Sbjct: 773 IFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFM 832
Query: 111 DVRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYL 170
+V W W L+ I PLL V R ++E+QAK + + Q+ + + +L
Sbjct: 833 NVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892
Query: 171 KINPLLNVHRTDQELQAKSEE---------------LEALKSKLEKLEVERNLLKQDNTR 215
+ N L + + EL A++EE L +++++E+ E L+ + +
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 216 LETK 219
++ +
Sbjct: 953 MQQQ 956
Score = 27.9 bits (62), Expect = 3.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 178 VHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219
+ +L K EEL+A ++LE ++N + LE+
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Score = 26.7 bits (59), Expect = 8.7
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 178 VHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219
+ + + E+LE+ K+ K E ++ L ++ L+T+
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 97.4 bits (243), Expect = 2e-23
Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 29/198 (14%)
Query: 51 IFFRSSVLPQLEAERDKKL--SSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRK 108
IFFR+ VL QLE ER + S + + ++ + + ++ +Q +
Sbjct: 740 IFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNA 799
Query: 109 FM---DVRDWSWWRLYLKINPLLNVHRTDQE------------------------LQAKS 141
+ ++ + N +T L+
Sbjct: 800 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 859
Query: 142 VQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEK 201
+ RI+ K + V + R+ K+ + + A+++KL+
Sbjct: 860 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 919
Query: 202 LEVERNLLKQDNTRLETK 219
LE + + +
Sbjct: 920 LEAFDGECQSLEGQSNSD 937
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 85.2 bits (211), Expect = 3e-22
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 65 RDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKI 124
RD++LS + FQA RGYL RK KL+ Q + + IQRN+RK++ +R+W WW+LY K+
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKV 60
Query: 125 NPLL 128
PLL
Sbjct: 61 KPLL 64
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 85.1 bits (211), Expect = 4e-22
Identities = 22/62 (35%), Positives = 40/62 (64%)
Query: 67 KKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDWSWWRLYLKINP 126
+++ V QA RG++ RKH + + + V+ R IQ N+R +++ ++W+WW+L+ K P
Sbjct: 1 RRIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLFAKARP 60
Query: 127 LL 128
LL
Sbjct: 61 LL 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 89.4 bits (222), Expect = 1e-20
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 20/187 (10%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
IFFR+ + LE R KL + I Q RG+L RK +++ A IQR VR
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR---RAAITIQRYVRGHQ 805
Query: 111 D------VRDWSWWRLYLKINPLLNVHRTDQELQAKSVQDVAVRRIQRNVPKLMDVRDW- 163
+R + K + V + Q ++ ++ A+ R K +
Sbjct: 806 ARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREH 865
Query: 164 ------SWWRLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVE---RNLLKQDNT 214
R +L + LQ + A K +L+KL++E K+ +
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA-KRELKKLKIEARSVERYKKLHI 924
Query: 215 RLETKTK 221
LE K
Sbjct: 925 GLENKIM 931
Score = 36.2 bits (84), Expect = 0.007
Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 25/187 (13%)
Query: 47 PVFQIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNV 106
+ Q F R + +R + + I QA RGYL R + ++ IQ++V
Sbjct: 820 IIIQKFQRM----YVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHV 874
Query: 107 RKFMDVRDW-----------SWWRLYLKINPLLNVH----RTDQELQAKSVQDVAVRRIQ 151
R ++ + +R + L + ++ + + + ++Q
Sbjct: 875 RGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ 934
Query: 152 RNVPKLMDVRDWSWWRLYLKINPLLNVHRT-DQELQAKSEELEALKSKLEKLEVERNLLK 210
R + + L K+N L + T ++L++ E L + + + L+
Sbjct: 935 RKIDEQNKEYK----SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 211 QDNTRLE 217
++ +L
Sbjct: 991 EEIAKLR 997
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 88.6 bits (220), Expect = 2e-20
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 33/204 (16%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHL----AKLKVQD--VAVRCIQR 104
IFFR+ L ++E R+++L S + R + + A L+ +D ++ +Q
Sbjct: 744 IFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQS 803
Query: 105 NVRKFM---DVRDWSWWRLYLKINPLLNVHRTDQE------------------------L 137
+ + ++ + N +T L
Sbjct: 804 FMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL 863
Query: 138 QAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEELEALKS 197
+ + RI+ K + V + R+ K+ + + A+++
Sbjct: 864 EKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQA 923
Query: 198 KLEKLEVERNLLKQDNTRLETKTK 221
KL+ LE + + +
Sbjct: 924 KLKNLEAFDGECQSLEGQSNSDLL 947
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 60.7 bits (148), Expect = 6e-11
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLK 93
IFFR+ + LE R KL + I Q RG+L RK +++
Sbjct: 749 IFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 791
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 40.3 bits (94), Expect = 7e-05
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 174 PLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETK 219
PLL ++E+ + EE LK LEK E R L++ L +
Sbjct: 4 PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQE 49
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 38.8 bits (91), Expect = 0.001
Identities = 5/34 (14%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 51 IFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYL 84
+FFR + + + R +L
Sbjct: 752 VFFRPGKFAEFDQIMKSDPDHLAELVK-RVNHWL 784
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 33.4 bits (76), Expect = 0.010
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 174 PLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLE 217
PLL++ R ++E++ + ++++ +K L K E + L++ N L
Sbjct: 5 PLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLL 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.033
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 80/271 (29%)
Query: 4 IVKEALSNAVISTQIVKKLSASPQRNHDLEYNH-CAI---LMNRVLSPVFQIFFRSSV-L 58
+V + + + + + +L + + + I L N +P +
Sbjct: 183 LVGDLIKFS---AETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 59 P-----QLEAERD--KKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCI--------- 102
P QL K L E ++ +G H L V I
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG--HSQGL----VTAVAIAETDSWESF 292
Query: 103 QRNVRKFMDVRDWSWWRLYLKINPLLNVHRT--DQELQAKSVQDVAVRRIQRNVPKLM-D 159
+VRK + V + R + + L ++D ++ VP M
Sbjct: 293 FVSVRKAITVLFFIGVR----------CYEAYPNTSLPPSILED-SLEN-NEGVPSPMLS 340
Query: 160 VRDWSWWRLYLKINPLLN-VHRTDQELQAKS-------------------EELEALKSKL 199
+ + L + + V++T+ L A + L L L
Sbjct: 341 ISN-------LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 200 EKLEVERNLLKQDNTRLE-TKTKIR---EFL 226
K + L D +R+ ++ K++ FL
Sbjct: 394 RKAKAPSGL---DQSRIPFSERKLKFSNRFL 421
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ motif,
acetylation; 2.5A {Mus musculus}
Length = 58
Score = 30.6 bits (70), Expect = 0.052
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 68 KLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFM 110
KL + I Q RG+L RK ++ A +QR VR +
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQ---RAAITVQRYVRGYQ 42
Score = 29.4 bits (67), Expect = 0.13
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 67 KKLSSRVIEFQARCRGYLARKHLAKLKVQDVAV 99
+ I Q RGY AR + L+ A
Sbjct: 25 LCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 33.4 bits (77), Expect = 0.054
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 51 IFFRSSVLPQLEAERDKKLS 70
+FF++ +L LE RD++LS
Sbjct: 763 VFFKAGLLGLLEEMRDERLS 782
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.097
Identities = 23/157 (14%), Positives = 57/157 (36%), Gaps = 28/157 (17%)
Query: 75 EFQARCRGYLARKHLAKLKVQDVAVRCIQ---RNVRKFMDVRDWSWWRLYLKINPLLNVH 131
E Q + + L V + + +Q +++ ++ + + + +
Sbjct: 13 EHQYQYKDIL--SVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-----IIMSKDAVSGTL 65
Query: 132 RTDQELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKSEE 191
R L +K + V Q+ V +++ ++ + L I E + S
Sbjct: 66 RLFWTLLSKQEEMV-----QKFVEEVLR-INYKF--LMSPIK---------TEQRQPSMM 108
Query: 192 LEALKSKLEKLEVERNLLKQDN-TRLETKTKIREFLL 227
+ ++L + + + N +RL+ K+R+ LL
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Score = 30.6 bits (68), Expect = 0.51
Identities = 37/244 (15%), Positives = 72/244 (29%), Gaps = 67/244 (27%)
Query: 6 KEALSNA--VISTQIVKKLSASPQRNHDLEYNHCAILMN------RVLSPV-FQIFFRS- 55
+E L+ +S I + + + ++ +C L VL P ++ F
Sbjct: 320 REVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 56 SVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKFMDVRDW 115
SV P + + ++ L + K V V + + + +
Sbjct: 379 SVFPP-----SAHIPTILLS--------LIWFDVIKSDVMVVVNKL----HKYSLVEKQP 421
Query: 116 SWWRLYLKINPLLNVHRTDQELQAKSVQDVAV-RRI--QRNVPKLMDVRDWS------WW 166
+ + EL+ K + A+ R I N+PK D D ++
Sbjct: 422 KESTISI--------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 167 RLYLKINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFL 226
++ H + L + ++ L+Q KIR
Sbjct: 474 YSHI-------GHHLKNIEHPERMTL------FRMVFLDFRFLEQ---------KIRHDS 511
Query: 227 LPWN 230
WN
Sbjct: 512 TAWN 515
Score = 29.1 bits (64), Expect = 1.7
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 46/136 (33%)
Query: 87 KHLAKLKVQDVAVRCI--------QRNVRKFMDV---RDWSWWRLYLKINPLLNVHRTDQ 135
H+ K + + V+KF++ ++ + L I
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIK---------T 100
Query: 136 ELQAKSVQDVAVRRIQRNVPKLMDVRDWSWWRLYLKINPL--LNVHRTDQELQAKSEELE 193
E + S ++ RD RLY NV R +
Sbjct: 101 EQRQPS----------MMTRMYIEQRD----RLYNDNQVFAKYNVSR--------LQPYL 138
Query: 194 ALKSKLEKLEVERNLL 209
L+ L +L +N+L
Sbjct: 139 KLRQALLELRPAKNVL 154
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint,
cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens}
SCOP: h.1.22.1
Length = 100
Score = 30.1 bits (67), Expect = 0.20
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 181 TDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIRE 224
+Q EE + L+ K+E+LE ER+ L+++ LE + + R
Sbjct: 3 AEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 29.9 bits (68), Expect = 0.84
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 50 QIFFRSSVLPQLEAERDKKL 69
+IFFR+ L ++E R+ +
Sbjct: 743 KIFFRAGQLARIEEARELRG 762
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 29.2 bits (66), Expect = 0.88
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 183 QELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIREFLLP 228
+ + ++EL + +L ++R + + E I+
Sbjct: 8 RRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPG 53
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 27.3 bits (61), Expect = 2.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 171 KINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLK 210
+N L ++ + + E+ +ALKS ++ LEVE N +
Sbjct: 77 SVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 27.8 bits (61), Expect = 2.6
Identities = 7/51 (13%), Positives = 20/51 (39%)
Query: 171 KINPLLNVHRTDQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTK 221
+ L+ + D+E+ + + + L+K ++ + LE +
Sbjct: 6 HLKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKL 56
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 27.9 bits (63), Expect = 2.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 175 LLNVHRTDQELQ--AKSEELEALKSKLEKLEVERNLL 209
++ D EL+ AK EEL+ K E+ E + L
Sbjct: 78 MIKDASGDPELEEMAK-EELKNSKVAKEEYEEKLRFL 113
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure,
leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP:
h.1.12.1
Length = 78
Score = 25.6 bits (55), Expect = 4.6
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 187 AKSEELEALKSKLEKLEVERNLLKQDNTRLET 218
A EE+E LK ++ +L + + L+++NT L+T
Sbjct: 12 AVREEVEILKEQIRELVEKNSQLERENTLLKT 43
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 27.2 bits (59), Expect = 5.4
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 86 RKHLAKLKVQDVAVRCIQRNVRKFMDVRDW-SWWRLYLKINPLLNVHRTD 134
+ + K + +R ++ + W + ++ PLL+ + +
Sbjct: 155 LQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLAN 204
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 27.1 bits (61), Expect = 5.7
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 51 IFFRSS-VLPQLEAERDKKL 69
+F R+ L E +R+ ++
Sbjct: 677 VFIRNPTTLFYFEEKRELEM 696
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 26.6 bits (59), Expect = 6.3
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 175 LLNVHRTDQELQAKSEELEALKSKLEKLEVE----RNLLKQDNTRLETKT 220
L N + +Q L+ + EEL L+S++ L+ E + L ++ +
Sbjct: 21 LKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRDYDP 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.395
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,369,288
Number of extensions: 191209
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 102
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)