RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6619
         (230 letters)



>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score =  105 bits (262), Expect = 1e-26
 Identities = 34/79 (43%), Positives = 50/79 (63%)

Query: 50  QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
           ++FF++ +L  LE  RD KL+  +   QARCRG+L R     +  +  ++ CIQ NVR F
Sbjct: 715 KVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSF 774

Query: 110 MDVRDWSWWRLYLKINPLL 128
           M+V+ W W +L+ KI PLL
Sbjct: 775 MNVKHWPWMKLFFKIKPLL 793


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score =  105 bits (262), Expect = 1e-26
 Identities = 38/79 (48%), Positives = 55/79 (69%)

Query: 50  QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLKVQDVAVRCIQRNVRKF 109
           ++FF++ VL  LE  RD++LS  +  FQA  RGYL RK   KL+ Q + +  IQRN+RK+
Sbjct: 711 KVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 770

Query: 110 MDVRDWSWWRLYLKINPLL 128
           + +R+W WW+LY K+ PLL
Sbjct: 771 LVLRNWQWWKLYSKVKPLL 789


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 57.1 bits (137), Expect = 3e-10
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 50  QIFFRSSVLPQLEAERDKKLSSRVIEFQARCRGYLARKHLAKLK 93
           +IFFR+  +  LE  R  KL +  I  Q   RG+L RK   +++
Sbjct: 686 KIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMR 729


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 28.3 bits (62), Expect = 0.87
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 182 DQELQAKSEELEALKSKLEKLEVERNLLKQDNTRLETKTKIR 223
            +  + ++ ELE  K +L +  +ER  L   NT ++ +  IR
Sbjct: 9   LRCNEQQAAELETCKEQLFQSNMERKELH--NTVMDLRGNIR 48


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 27.8 bits (61), Expect = 1.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 50  QIFFRSSVLPQLEAERD 66
           +IFFR+ VL  LE ERD
Sbjct: 694 KIFFRTGVLAHLEEERD 710


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 50  QIFFRSSVLPQLEAERD 66
           +IFFR+  L ++E  R+
Sbjct: 696 KIFFRAGQLARIEEARE 712


>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 360

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 153 NVPKLMDVRDWSWWRLYLKINPLLNVHRTDQELQAKS-EELEALKSKLEKLEVERNLLKQ 211
            VP        + +  Y         H   ++   K+  E+E + + L+   V       
Sbjct: 24  CVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDP 83

Query: 212 DNTRLETKTKIREF 225
            +  L+ KT   E 
Sbjct: 84  IDWSLKYKTPDFES 97


>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1,
           C-terminal dimerization domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 59

 Score = 23.6 bits (51), Expect = 7.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 183 QELQAKSEELEALKSKLEKLEVERN 207
            E     +++  LK  +E LE ER+
Sbjct: 1   DEAAELMQQVNVLKLTVEDLEKERD 25


>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 101

 Score = 24.2 bits (51), Expect = 7.7
 Identities = 6/28 (21%), Positives = 13/28 (46%)

Query: 140 KSVQDVAVRRIQRNVPKLMDVRDWSWWR 167
           ++  D+    + R    L+DVR+   + 
Sbjct: 4   RTFHDIRAALLARRELALLDVREEDPFA 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 837,395
Number of extensions: 37084
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 22
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)