Query psy6621
Match_columns 133
No_of_seqs 150 out of 1173
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:54:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0495 LeuS Leucyl-tRNA synth 100.0 3.4E-39 7.4E-44 274.6 12.0 124 1-130 41-164 (814)
2 TIGR00396 leuS_bact leucyl-tRN 100.0 1.2E-37 2.7E-42 268.7 14.5 123 3-130 37-159 (842)
3 KOG0435|consensus 100.0 1.1E-38 2.4E-43 263.3 7.2 124 1-130 64-187 (876)
4 PLN02563 aminoacyl-tRNA ligase 100.0 2.7E-37 5.9E-42 268.5 14.4 123 3-130 118-241 (963)
5 PRK00390 leuS leucyl-tRNA synt 100.0 3.7E-37 7.9E-42 264.9 14.5 124 3-131 40-163 (805)
6 cd00817 ValRS_core catalytic c 100.0 4.1E-36 9E-41 240.4 13.9 124 3-131 9-148 (382)
7 PRK06039 ileS isoleucyl-tRNA s 100.0 3.7E-36 8E-41 262.9 13.9 123 3-130 49-188 (975)
8 PRK13208 valS valyl-tRNA synth 100.0 3.9E-36 8.4E-41 258.7 13.0 123 3-130 46-181 (800)
9 TIGR00392 ileS isoleucyl-tRNA 100.0 6.5E-36 1.4E-40 258.9 13.8 123 3-130 44-183 (861)
10 PRK13804 ileS isoleucyl-tRNA s 100.0 1.3E-35 2.9E-40 258.8 13.6 123 3-130 62-200 (961)
11 PRK05743 ileS isoleucyl-tRNA s 100.0 1.6E-35 3.6E-40 257.4 14.0 123 3-130 57-192 (912)
12 PF00133 tRNA-synt_1: tRNA syn 100.0 3.7E-35 8.1E-40 246.1 14.3 123 3-130 31-170 (601)
13 COG0525 ValS Valyl-tRNA synthe 100.0 3.6E-35 7.8E-40 250.2 13.0 123 3-130 41-179 (877)
14 PLN02943 aminoacyl-tRNA ligase 100.0 6E-35 1.3E-39 254.7 13.6 123 3-130 96-234 (958)
15 COG0143 MetG Methionyl-tRNA sy 100.0 1.2E-34 2.5E-39 239.8 14.2 123 3-132 13-135 (558)
16 TIGR00422 valS valyl-tRNA synt 100.0 5.6E-35 1.2E-39 253.1 12.8 123 3-130 41-179 (861)
17 PLN02381 valyl-tRNA synthetase 100.0 7.6E-35 1.6E-39 255.8 13.6 123 3-130 136-275 (1066)
18 PRK05729 valS valyl-tRNA synth 100.0 7.4E-35 1.6E-39 252.6 12.9 123 3-130 44-182 (874)
19 cd00812 LeuRS_core catalytic c 100.0 2.6E-34 5.6E-39 224.8 13.3 123 3-130 8-130 (314)
20 PLN02843 isoleucyl-tRNA synthe 100.0 2.5E-34 5.4E-39 251.1 13.9 123 3-130 40-176 (974)
21 TIGR00395 leuS_arch leucyl-tRN 100.0 2.6E-34 5.7E-39 250.4 12.7 123 3-130 33-179 (938)
22 PRK14900 valS valyl-tRNA synth 100.0 3.5E-34 7.5E-39 251.6 13.5 123 3-130 56-195 (1052)
23 PTZ00419 valyl-tRNA synthetase 100.0 4.6E-34 1E-38 250.2 14.0 123 3-130 68-207 (995)
24 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.9E-34 8.4E-39 229.6 12.4 123 3-132 7-129 (391)
25 PLN02224 methionine-tRNA ligas 100.0 8.7E-34 1.9E-38 237.8 15.0 123 3-132 77-199 (616)
26 PLN02882 aminoacyl-tRNA ligase 100.0 4.9E-34 1.1E-38 252.1 14.1 123 3-130 46-185 (1159)
27 COG0060 IleS Isoleucyl-tRNA sy 100.0 3.3E-34 7.1E-39 246.3 12.1 123 3-130 57-195 (933)
28 PTZ00427 isoleucine-tRNA ligas 100.0 5.8E-34 1.3E-38 251.7 13.9 123 3-130 110-249 (1205)
29 cd00818 IleRS_core catalytic c 100.0 9.5E-34 2.1E-38 223.7 13.0 118 3-125 9-143 (338)
30 cd00814 MetRS_core catalytic c 100.0 2.6E-33 5.6E-38 219.5 14.7 122 3-131 8-129 (319)
31 cd00668 Ile_Leu_Val_MetRS_core 100.0 2E-33 4.4E-38 219.3 13.8 120 3-127 8-140 (312)
32 PLN02610 probable methionyl-tR 100.0 5.8E-33 1.3E-37 238.3 15.0 122 3-131 25-147 (801)
33 PRK12268 methionyl-tRNA synthe 100.0 5.1E-33 1.1E-37 231.2 13.8 122 3-131 11-133 (556)
34 PRK00133 metG methionyl-tRNA s 100.0 1.2E-32 2.5E-37 233.6 15.0 123 3-132 10-132 (673)
35 TIGR00398 metG methionyl-tRNA 100.0 5.2E-32 1.1E-36 224.1 14.9 123 3-132 7-129 (530)
36 PLN02959 aminoacyl-tRNA ligase 100.0 3E-32 6.4E-37 239.9 12.7 123 3-130 53-251 (1084)
37 PRK12267 methionyl-tRNA synthe 100.0 1.2E-31 2.5E-36 226.6 14.9 123 3-132 12-134 (648)
38 PRK11893 methionyl-tRNA synthe 100.0 1.8E-31 3.9E-36 219.6 14.9 121 3-130 9-129 (511)
39 PRK12300 leuS leucyl-tRNA synt 100.0 3.2E-31 6.9E-36 230.3 12.4 116 10-130 1-140 (897)
40 PRK12418 cysteinyl-tRNA synthe 100.0 1.7E-29 3.7E-34 201.8 12.9 120 1-129 12-138 (384)
41 PLN02946 cysteine-tRNA ligase 100.0 1.5E-29 3.2E-34 209.5 12.4 121 1-129 83-205 (557)
42 PRK00260 cysS cysteinyl-tRNA s 100.0 6.7E-29 1.4E-33 203.1 12.6 120 1-129 26-148 (463)
43 TIGR00435 cysS cysteinyl-tRNA 100.0 7.1E-29 1.5E-33 203.0 12.3 121 1-129 24-147 (465)
44 TIGR03447 mycothiol_MshC cyste 100.0 8.2E-29 1.8E-33 199.1 12.2 121 1-129 39-165 (411)
45 PRK14535 cysS cysteinyl-tRNA s 100.0 3.9E-28 8.5E-33 203.4 12.9 121 1-129 251-374 (699)
46 PRK14536 cysS cysteinyl-tRNA s 100.0 6.4E-28 1.4E-32 197.7 13.0 121 1-129 26-158 (490)
47 KOG0433|consensus 100.0 6.2E-28 1.4E-32 201.3 12.0 120 6-130 66-199 (937)
48 PRK14534 cysS cysteinyl-tRNA s 100.0 9.6E-28 2.1E-32 196.0 12.8 121 1-129 24-156 (481)
49 PTZ00399 cysteinyl-tRNA-synthe 100.0 6.4E-28 1.4E-32 203.6 11.8 121 1-129 63-187 (651)
50 KOG0436|consensus 99.9 4.7E-27 1E-31 186.9 12.2 122 4-132 48-169 (578)
51 KOG0432|consensus 99.9 1.4E-26 2.9E-31 195.9 10.7 122 3-129 83-221 (995)
52 PF01406 tRNA-synt_1e: tRNA sy 99.9 1.6E-26 3.5E-31 178.6 10.0 121 1-129 11-134 (300)
53 cd00671 ArgRS_core catalytic c 99.9 3.2E-26 7E-31 170.4 10.8 116 3-128 8-123 (212)
54 COG0215 CysS Cysteinyl-tRNA sy 99.9 2.9E-25 6.3E-30 179.4 10.2 121 1-129 25-148 (464)
55 cd00672 CysRS_core catalytic c 99.9 1.9E-24 4.1E-29 161.2 8.0 87 1-94 23-112 (213)
56 KOG0434|consensus 99.9 1.9E-23 4.1E-28 174.0 9.9 123 3-130 46-185 (1070)
57 PRK01611 argS arginyl-tRNA syn 99.9 6.1E-23 1.3E-27 169.6 10.2 118 3-127 119-237 (507)
58 KOG2007|consensus 99.8 2.4E-20 5.2E-25 151.0 10.2 121 1-129 58-186 (586)
59 cd00674 LysRS_core_class_I cat 99.8 2.4E-18 5.2E-23 136.6 8.5 106 4-117 27-150 (353)
60 cd00802 class_I_aaRS_core cata 99.8 5.7E-18 1.2E-22 118.6 8.7 73 3-80 5-77 (143)
61 KOG1247|consensus 99.7 3.4E-18 7.4E-23 136.4 5.0 122 3-131 22-144 (567)
62 KOG0437|consensus 99.7 2.8E-16 6.1E-21 132.3 8.5 122 4-130 53-245 (1080)
63 PRK12451 arginyl-tRNA syntheta 99.6 9.6E-15 2.1E-19 122.3 12.4 116 3-127 121-288 (562)
64 PF00750 tRNA-synt_1d: tRNA sy 99.6 7.2E-15 1.6E-19 117.0 8.9 118 3-128 28-202 (354)
65 TIGR00456 argS arginyl-tRNA sy 99.5 4.4E-14 9.5E-19 118.4 11.0 116 3-127 120-290 (566)
66 COG0018 ArgS Arginyl-tRNA synt 99.5 4E-14 8.7E-19 118.6 10.3 116 3-126 125-294 (577)
67 PRK00750 lysK lysyl-tRNA synth 99.5 7.3E-15 1.6E-19 121.8 5.2 106 4-117 31-156 (510)
68 PLN02286 arginine-tRNA ligase 99.5 1.4E-13 3E-18 115.6 9.9 115 3-127 125-292 (576)
69 cd09287 GluRS_non_core catalyt 99.5 8.4E-14 1.8E-18 105.4 7.4 92 2-118 6-97 (240)
70 PRK04156 gltX glutamyl-tRNA sy 99.4 1.5E-12 3.3E-17 108.7 7.7 92 2-118 106-197 (567)
71 cd00807 GlnRS_core catalytic c 99.3 4.5E-12 9.8E-17 95.9 7.5 90 2-118 6-95 (238)
72 TIGR00463 gltX_arch glutamyl-t 99.3 3E-12 6.4E-17 106.9 7.1 91 2-119 98-188 (560)
73 PLN03233 putative glutamate-tR 99.3 4E-12 8.6E-17 105.3 7.1 91 2-119 16-106 (523)
74 COG0008 GlnS Glutamyl- and glu 99.3 4.3E-12 9.4E-17 104.2 6.8 92 2-119 14-105 (472)
75 TIGR03838 queuosine_YadB gluta 99.3 4.1E-12 8.8E-17 98.0 6.2 91 2-118 5-95 (272)
76 TIGR00467 lysS_arch lysyl-tRNA 99.3 2.6E-12 5.6E-17 106.6 5.4 78 5-88 27-122 (515)
77 PTZ00402 glutamyl-tRNA synthet 99.3 6.8E-12 1.5E-16 105.1 7.3 91 2-118 57-147 (601)
78 PF00749 tRNA-synt_1c: tRNA sy 99.3 6.4E-12 1.4E-16 98.7 5.8 91 2-118 6-96 (314)
79 PLN02907 glutamate-tRNA ligase 99.3 1.1E-11 2.3E-16 106.5 7.0 90 2-118 218-307 (722)
80 TIGR00440 glnS glutaminyl-tRNA 99.2 2E-11 4.4E-16 101.2 7.5 92 2-119 5-96 (522)
81 PRK05710 glutamyl-Q tRNA(Asp) 99.2 1.9E-11 4.2E-16 95.3 6.8 91 2-118 10-100 (299)
82 PRK12410 glutamylglutaminyl-tR 99.2 2.4E-11 5.1E-16 98.9 7.3 90 2-118 4-93 (433)
83 PRK05347 glutaminyl-tRNA synth 99.2 2.5E-11 5.5E-16 101.0 7.1 92 2-119 34-125 (554)
84 PTZ00437 glutaminyl-tRNA synth 99.2 2.9E-11 6.2E-16 100.8 7.3 91 2-119 56-146 (574)
85 PRK12558 glutamyl-tRNA synthet 99.2 4E-11 8.7E-16 97.9 7.8 90 2-118 7-96 (445)
86 TIGR00464 gltX_bact glutamyl-t 99.2 5E-11 1.1E-15 98.2 7.2 91 2-118 6-96 (470)
87 cd00418 GlxRS_core catalytic c 99.2 6.5E-11 1.4E-15 89.3 6.5 87 2-114 6-92 (230)
88 PRK14703 glutaminyl-tRNA synth 99.1 5.9E-11 1.3E-15 102.2 5.7 92 2-119 36-127 (771)
89 PRK14895 gltX glutamyl-tRNA sy 99.1 1.6E-10 3.5E-15 95.7 7.4 91 2-118 9-99 (513)
90 PLN02859 glutamine-tRNA ligase 99.1 1.4E-10 3E-15 99.6 7.3 91 2-119 269-359 (788)
91 PRK01406 gltX glutamyl-tRNA sy 99.1 2E-10 4.3E-15 94.8 6.6 92 2-118 9-106 (476)
92 PLN02627 glutamyl-tRNA synthet 99.1 2.7E-10 5.8E-15 94.7 6.3 92 2-118 50-148 (535)
93 cd00808 GluRS_core catalytic c 99.0 9.4E-10 2E-14 83.5 7.9 86 2-114 6-100 (239)
94 KOG1147|consensus 99.0 6.5E-10 1.4E-14 91.7 5.6 95 2-123 205-299 (712)
95 KOG1148|consensus 98.3 1.1E-06 2.3E-11 73.6 6.3 90 2-118 253-342 (764)
96 KOG1149|consensus 98.2 4.2E-06 9.1E-11 68.0 6.6 94 2-118 38-136 (524)
97 KOG4426|consensus 98.2 1.1E-05 2.3E-10 66.0 8.4 110 8-127 201-363 (656)
98 PF01921 tRNA-synt_1f: tRNA sy 98.1 8.3E-07 1.8E-11 70.9 1.2 78 5-87 32-127 (360)
99 COG1384 LysS Lysyl-tRNA synthe 97.9 3.7E-05 8E-10 63.7 7.3 78 5-87 28-124 (521)
100 KOG1195|consensus 97.6 0.00039 8.5E-09 57.7 7.9 117 4-128 119-287 (567)
101 cd00806 TrpRS_core catalytic c 96.0 0.06 1.3E-06 41.8 8.5 67 5-87 7-73 (280)
102 cd00805 TyrRS_core catalytic c 95.2 0.033 7.2E-07 42.9 4.3 71 5-85 8-81 (269)
103 PRK12285 tryptophanyl-tRNA syn 95.1 0.16 3.5E-06 41.1 8.3 66 5-87 74-139 (368)
104 cd00395 Tyr_Trp_RS_core cataly 94.9 0.06 1.3E-06 41.7 5.2 71 5-85 7-80 (273)
105 PRK12284 tryptophanyl-tRNA syn 94.4 0.26 5.6E-06 40.7 7.8 82 5-102 10-92 (431)
106 PLN02486 aminoacyl-tRNA ligase 94.2 0.6 1.3E-05 38.0 9.5 67 5-87 81-148 (383)
107 COG0180 TrpS Tryptophanyl-tRNA 93.9 0.37 7.9E-06 38.2 7.5 84 5-104 13-98 (314)
108 PRK13354 tyrosyl-tRNA syntheta 93.8 0.14 3.1E-06 41.9 5.2 67 5-81 41-110 (410)
109 TIGR00233 trpS tryptophanyl-tR 93.8 0.37 8E-06 38.3 7.5 86 5-106 10-96 (328)
110 PLN02886 aminoacyl-tRNA ligase 93.0 0.54 1.2E-05 38.4 7.4 80 5-102 54-134 (389)
111 PRK00927 tryptophanyl-tRNA syn 93.0 0.57 1.2E-05 37.3 7.4 65 5-87 9-73 (333)
112 PRK12556 tryptophanyl-tRNA syn 92.7 0.78 1.7E-05 36.6 7.8 82 5-102 11-93 (332)
113 PRK05912 tyrosyl-tRNA syntheta 92.3 0.5 1.1E-05 38.7 6.4 66 5-80 41-109 (408)
114 PRK08560 tyrosyl-tRNA syntheta 92.3 0.61 1.3E-05 37.0 6.7 66 5-87 38-103 (329)
115 COG0162 TyrS Tyrosyl-tRNA synt 91.2 0.34 7.3E-06 39.7 4.2 100 6-116 41-151 (401)
116 PTZ00126 tyrosyl-tRNA syntheta 91.2 1.1 2.4E-05 36.5 7.1 69 5-87 74-142 (383)
117 PRK12282 tryptophanyl-tRNA syn 90.8 2.2 4.7E-05 34.1 8.4 66 5-87 10-75 (333)
118 PRK12283 tryptophanyl-tRNA syn 90.0 1.8 3.9E-05 35.4 7.5 79 5-101 10-90 (398)
119 TIGR00234 tyrS tyrosyl-tRNA sy 89.5 1.1 2.4E-05 36.3 5.9 67 5-81 38-107 (377)
120 PF00579 tRNA-synt_1b: tRNA sy 86.8 0.79 1.7E-05 35.5 3.4 32 5-45 13-44 (292)
121 PTZ00348 tyrosyl-tRNA syntheta 82.1 7 0.00015 34.3 7.3 68 5-87 40-108 (682)
122 COG1656 Uncharacterized conser 79.3 2.5 5.5E-05 30.5 3.2 31 24-61 18-48 (165)
123 COG3171 Uncharacterized protei 79.0 7.2 0.00016 26.4 5.0 48 75-122 22-70 (119)
124 PF01927 Mut7-C: Mut7-C RNAse 75.4 4.2 9E-05 28.4 3.4 31 24-61 12-42 (147)
125 PF04405 ScdA_N: Domain of Unk 74.9 3.7 8E-05 24.2 2.5 32 40-71 18-52 (56)
126 cd02875 GH18_chitobiase Chitob 74.8 25 0.00054 28.2 8.1 61 67-127 96-162 (358)
127 cd06545 GH18_3CO4_chitinase Th 74.1 21 0.00046 26.8 7.3 46 70-116 86-134 (253)
128 PF02662 FlpD: Methyl-viologen 70.3 31 0.00067 23.4 7.7 77 38-114 29-124 (124)
129 cd02156 nt_trans nucleotidyl t 69.6 2.4 5.3E-05 27.6 1.0 15 2-17 4-18 (105)
130 PF10007 DUF2250: Uncharacteri 69.4 6.1 0.00013 25.7 2.8 48 74-123 11-58 (92)
131 cd06544 GH18_narbonin Narbonin 69.4 15 0.00033 28.1 5.5 54 65-119 95-151 (253)
132 KOG2713|consensus 67.6 22 0.00047 28.3 6.0 68 5-87 21-89 (347)
133 cd02874 GH18_CFLE_spore_hydrol 66.0 25 0.00053 27.3 6.2 50 68-117 88-140 (313)
134 cd06549 GH18_trifunctional GH1 60.2 22 0.00048 27.6 5.0 50 68-117 89-141 (298)
135 cd06542 GH18_EndoS-like Endo-b 58.2 76 0.0016 23.7 8.5 59 23-92 55-116 (255)
136 PF04320 DUF469: Protein with 57.2 17 0.00037 24.1 3.3 51 73-123 6-56 (101)
137 PRK13276 cell wall biosynthesi 57.2 12 0.00027 28.3 2.9 50 18-74 6-59 (224)
138 cd02872 GH18_chitolectin_chito 55.6 82 0.0018 24.9 7.6 45 69-113 98-150 (362)
139 PF10009 DUF2252: Uncharacteri 55.3 98 0.0021 25.2 8.0 88 8-113 48-153 (385)
140 cd02878 GH18_zymocin_alpha Zym 54.6 86 0.0019 24.8 7.5 75 5-92 39-119 (345)
141 cd00598 GH18_chitinase-like Th 54.1 35 0.00075 24.4 4.9 48 68-115 89-142 (210)
142 PF12802 MarR_2: MarR family; 53.9 23 0.0005 20.1 3.2 20 101-120 36-55 (62)
143 PF07394 DUF1501: Protein of u 53.0 44 0.00095 26.8 5.7 58 20-87 233-292 (392)
144 PF14671 DSPn: Dual specificit 51.1 24 0.00051 24.8 3.4 36 8-48 42-78 (141)
145 smart00345 HTH_GNTR helix_turn 49.9 37 0.00081 18.8 3.7 22 101-122 35-56 (60)
146 smart00550 Zalpha Z-DNA-bindin 49.5 27 0.00059 20.9 3.1 29 101-129 37-66 (68)
147 TIGR00125 cyt_tran_rel cytidyl 49.1 7.2 0.00016 22.7 0.5 15 4-18 5-19 (66)
148 KOG2623|consensus 48.5 49 0.0011 27.5 5.2 67 6-82 72-141 (467)
149 COG3355 Predicted transcriptio 48.4 29 0.00063 23.9 3.4 23 101-123 57-79 (126)
150 cd07377 WHTH_GntR Winged helix 46.2 42 0.00091 18.9 3.6 21 101-121 40-60 (66)
151 COG2185 Sbm Methylmalonyl-CoA 46.1 76 0.0016 22.4 5.3 18 98-115 75-92 (143)
152 PF13730 HTH_36: Helix-turn-he 45.3 24 0.00053 19.7 2.4 16 101-116 40-55 (55)
153 COG1541 PaaK Coenzyme F390 syn 44.0 85 0.0019 26.2 6.1 100 6-114 101-204 (438)
154 PF03920 TLE_N: Groucho/TLE N- 43.6 18 0.0004 25.2 1.9 29 1-29 1-30 (135)
155 COG3078 Uncharacterized protei 43.6 33 0.00071 24.5 3.1 23 65-87 128-150 (169)
156 PF01978 TrmB: Sugar-specific 42.9 48 0.001 19.5 3.5 21 101-121 37-57 (68)
157 PF00325 Crp: Bacterial regula 42.6 43 0.00093 17.4 2.8 16 101-116 17-32 (32)
158 PF11243 DUF3045: Protein of u 42.6 29 0.00064 22.0 2.5 18 104-121 36-53 (89)
159 TIGR03652 FeS_repair_RIC iron- 42.3 24 0.00052 26.1 2.5 36 40-75 14-52 (216)
160 TIGR02404 trehalos_R_Bsub treh 41.9 59 0.0013 23.9 4.6 24 102-125 40-63 (233)
161 PF01047 MarR: MarR family; I 41.9 47 0.001 18.7 3.3 21 101-121 32-52 (59)
162 PF13463 HTH_27: Winged helix 40.9 51 0.0011 19.0 3.4 21 101-121 33-53 (68)
163 TIGR01610 phage_O_Nterm phage 40.7 48 0.001 21.2 3.4 28 101-128 62-89 (95)
164 PRK11402 DNA-binding transcrip 39.8 65 0.0014 23.9 4.5 24 102-125 49-72 (241)
165 TIGR02325 C_P_lyase_phnF phosp 38.8 70 0.0015 23.5 4.5 24 102-125 48-71 (238)
166 PF03965 Penicillinase_R: Peni 38.5 47 0.001 21.8 3.2 28 100-127 35-64 (115)
167 PF01726 LexA_DNA_bind: LexA D 38.5 88 0.0019 18.7 4.7 20 101-120 41-60 (65)
168 cd02876 GH18_SI-CLP Stabilin-1 38.5 86 0.0019 24.4 5.2 52 67-118 92-151 (318)
169 PF00704 Glyco_hydro_18: Glyco 38.4 1.8E+02 0.0039 22.3 7.1 70 38-112 74-151 (343)
170 PRK11702 hypothetical protein; 38.3 49 0.0011 22.2 3.2 48 75-122 14-62 (108)
171 PF00392 GntR: Bacterial regul 38.2 66 0.0014 18.7 3.6 24 101-124 39-62 (64)
172 TIGR02647 DNA conserved hypoth 38.0 34 0.00074 21.5 2.2 22 101-122 34-55 (77)
173 PRK14863 bifunctional regulato 37.8 92 0.002 24.0 5.2 46 69-117 86-137 (292)
174 PF11814 DUF3335: Peptidase_C3 37.7 1.1E+02 0.0025 22.9 5.4 43 65-118 91-133 (207)
175 PF00248 Aldo_ket_red: Aldo/ke 37.6 82 0.0018 23.6 4.8 48 69-118 82-133 (283)
176 cd02174 CCT CTP:phosphocholine 37.3 13 0.00028 26.2 0.3 16 1-16 5-20 (150)
177 KOG2805|consensus 36.6 75 0.0016 25.7 4.5 77 20-115 17-95 (377)
178 KOG2145|consensus 36.3 19 0.00041 28.8 1.1 30 8-47 97-126 (397)
179 PF04220 YihI: Der GTPase acti 35.5 50 0.0011 23.9 3.1 23 65-87 128-150 (169)
180 PRK14999 histidine utilization 35.1 87 0.0019 23.2 4.6 24 102-125 52-75 (241)
181 PF08784 RPA_C: Replication pr 34.8 54 0.0012 21.0 3.0 18 101-118 80-97 (102)
182 COG4352 RPL13 Ribosomal protei 34.8 77 0.0017 21.3 3.7 39 77-117 74-112 (113)
183 PRK05244 Der GTPase activator; 34.5 53 0.0012 24.0 3.1 23 65-87 127-149 (177)
184 PF13412 HTH_24: Winged helix- 34.2 60 0.0013 17.6 2.8 16 101-116 32-47 (48)
185 smart00636 Glyco_18 Glycosyl h 33.3 1.2E+02 0.0025 23.6 5.2 46 67-112 91-141 (334)
186 COG0656 ARA1 Aldo/keto reducta 32.7 85 0.0018 24.6 4.2 47 69-118 85-137 (280)
187 cd02173 ECT CTP:phosphoethanol 32.4 18 0.00039 25.5 0.4 15 2-16 6-20 (152)
188 COG0023 SUI1 Translation initi 32.3 40 0.00088 22.5 2.1 50 38-87 40-99 (104)
189 smart00419 HTH_CRP helix_turn_ 32.3 82 0.0018 16.5 3.7 20 101-120 23-42 (48)
190 PF10557 Cullin_Nedd8: Cullin 32.0 84 0.0018 18.7 3.3 23 100-122 44-66 (68)
191 cd02873 GH18_IDGF The IDGF's ( 31.8 1E+02 0.0023 25.1 4.8 25 68-92 106-133 (413)
192 TIGR02698 CopY_TcrY copper tra 31.7 66 0.0014 21.9 3.2 27 101-127 37-65 (130)
193 PLN02907 glutamate-tRNA ligase 31.3 72 0.0016 28.3 4.0 37 42-86 462-498 (722)
194 PF01325 Fe_dep_repress: Iron 30.5 84 0.0018 18.4 3.1 20 101-120 37-56 (60)
195 PF02042 RWP-RK: RWP-RK domain 29.8 83 0.0018 18.2 2.9 29 49-85 14-42 (52)
196 PHA02780 hypothetical protein; 29.6 1.3E+02 0.0029 18.1 5.0 42 66-114 31-72 (73)
197 COG1725 Predicted transcriptio 29.2 1.4E+02 0.003 20.5 4.4 23 102-124 51-73 (125)
198 PF06076 Orthopox_F14: Orthopo 29.2 1.4E+02 0.003 18.1 5.0 42 66-114 31-72 (73)
199 smart00576 BTP Bromodomain tra 28.6 1E+02 0.0022 18.8 3.4 15 18-32 6-20 (77)
200 COG1908 FrhD Coenzyme F420-red 28.1 2.1E+02 0.0045 19.8 7.0 74 42-115 34-126 (132)
201 cd06548 GH18_chitinase The GH1 28.0 1.6E+02 0.0034 23.0 5.1 47 68-114 110-169 (322)
202 PF00242 DNA_pol_viral_N: DNA 27.8 88 0.0019 25.6 3.6 29 98-126 144-174 (379)
203 TIGR01293 Kv_beta voltage-depe 27.7 1.6E+02 0.0034 22.9 5.0 47 69-118 96-146 (317)
204 PF04079 DUF387: Putative tran 27.6 25 0.00055 25.1 0.5 30 103-132 110-145 (159)
205 PRK10079 phosphonate metabolis 27.4 99 0.0021 22.9 3.7 25 101-125 50-74 (241)
206 PF01402 RHH_1: Ribbon-helix-h 27.3 99 0.0021 15.9 4.0 25 53-77 14-38 (39)
207 PF14359 DUF4406: Domain of un 27.2 1E+02 0.0022 19.7 3.3 32 1-41 1-33 (92)
208 PRK09875 putative hydrolase; P 27.0 1.9E+02 0.0041 22.6 5.3 91 21-118 141-237 (292)
209 PLN02587 L-galactose dehydroge 26.9 2E+02 0.0044 22.2 5.5 49 68-117 94-147 (314)
210 PRK10625 tas putative aldo-ket 26.5 1.6E+02 0.0034 23.2 4.9 49 69-117 108-174 (346)
211 cd06660 Aldo_ket_red Aldo-keto 26.5 1.7E+02 0.0036 21.9 4.9 48 68-117 92-143 (285)
212 PRK11172 dkgB 2,5-diketo-D-glu 26.4 1.7E+02 0.0036 22.1 4.9 48 69-117 73-124 (267)
213 COG5200 LUC7 U1 snRNP componen 25.5 62 0.0013 24.6 2.2 23 7-32 209-231 (258)
214 PLN02998 beta-glucosidase 25.1 55 0.0012 27.7 2.1 78 38-115 31-136 (497)
215 KOG0614|consensus 25.0 67 0.0014 27.9 2.6 28 97-124 523-550 (732)
216 TIGR01889 Staph_reg_Sar staphy 24.7 95 0.002 20.1 2.9 20 101-120 58-77 (109)
217 COG4911 Uncharacterized conser 24.7 2.3E+02 0.005 19.2 4.7 49 70-123 25-73 (123)
218 TIGR02018 his_ut_repres histid 24.7 1.2E+02 0.0026 22.2 3.7 24 102-125 41-64 (230)
219 PF03698 UPF0180: Uncharacteri 24.6 1E+02 0.0022 19.5 2.8 16 59-74 63-78 (80)
220 cd00092 HTH_CRP helix_turn_hel 23.8 1.5E+02 0.0032 16.7 3.9 20 101-120 40-59 (67)
221 KOG2806|consensus 23.8 1.5E+02 0.0032 24.5 4.4 53 66-118 146-203 (432)
222 PRK10992 iron-sulfur cluster r 23.8 76 0.0017 23.7 2.5 52 17-75 5-59 (220)
223 COG1846 MarR Transcriptional r 23.7 1E+02 0.0022 19.4 2.9 22 101-122 51-72 (126)
224 PRK13511 6-phospho-beta-galact 23.7 57 0.0012 27.2 2.0 87 41-128 8-120 (469)
225 PF07324 DGCR6: DiGeorge syndr 23.5 3.1E+02 0.0066 20.4 5.5 42 69-114 147-191 (196)
226 cd03715 RT_ZFREV_like RT_ZFREV 23.3 1.1E+02 0.0025 22.1 3.3 25 95-119 9-33 (210)
227 PHA02769 hypothetical protein; 23.0 1.9E+02 0.0041 19.9 4.0 25 28-57 108-132 (154)
228 PF09339 HTH_IclR: IclR helix- 22.9 1.5E+02 0.0032 16.4 3.3 19 101-119 33-51 (52)
229 smart00420 HTH_DEOR helix_turn 22.7 1.3E+02 0.0029 15.8 3.2 21 101-121 29-49 (53)
230 TIGR01233 lacG 6-phospho-beta- 22.6 67 0.0015 26.8 2.2 39 77-115 60-107 (467)
231 TIGR00640 acid_CoA_mut_C methy 22.5 2.6E+02 0.0056 19.0 6.6 37 19-61 17-53 (132)
232 PHA01976 helix-turn-helix prot 22.5 1.6E+02 0.0034 16.9 3.3 16 73-88 45-60 (67)
233 PF09012 FeoC: FeoC like trans 22.4 1.1E+02 0.0025 18.0 2.7 22 101-122 29-50 (69)
234 PF05619 DUF787: Borrelia burg 22.4 1.2E+02 0.0025 24.4 3.3 23 96-118 299-321 (362)
235 PF02295 z-alpha: Adenosine de 22.3 98 0.0021 18.6 2.4 58 70-129 4-64 (66)
236 PRK11512 DNA-binding transcrip 22.2 1.1E+02 0.0025 20.7 3.0 20 101-120 69-88 (144)
237 PF01467 CTP_transf_2: Cytidyl 22.1 38 0.00083 22.5 0.6 13 5-17 4-16 (157)
238 KOG2099|consensus 22.0 1.3E+02 0.0028 26.6 3.7 16 17-32 302-317 (843)
239 PF03962 Mnd1: Mnd1 family; I 21.8 77 0.0017 23.2 2.1 30 101-130 30-62 (188)
240 PRK09912 L-glyceraldehyde 3-ph 21.8 1.7E+02 0.0038 23.0 4.3 46 69-117 114-163 (346)
241 COG1313 PflX Uncharacterized F 21.7 1.5E+02 0.0033 23.7 3.8 93 19-119 153-262 (335)
242 PRK09764 DNA-binding transcrip 21.7 1.5E+02 0.0031 22.0 3.7 24 102-125 45-68 (240)
243 PF05402 PqqD: Coenzyme PQQ sy 21.6 1.1E+02 0.0023 17.8 2.5 17 100-116 51-67 (68)
244 PF12554 MOZART1: Mitotic-spin 21.5 1.1E+02 0.0023 17.5 2.2 27 44-70 17-43 (48)
245 smart00346 HTH_ICLR helix_turn 21.5 71 0.0015 19.5 1.7 19 101-119 35-53 (91)
246 COG2188 PhnF Transcriptional r 21.4 1.3E+02 0.0027 22.5 3.3 24 102-125 47-70 (236)
247 PF07022 Phage_CI_repr: Bacter 21.3 1.9E+02 0.0041 17.0 3.8 11 22-32 1-11 (66)
248 PF07836 DmpG_comm: DmpG-like 21.1 1.6E+02 0.0034 18.0 3.1 21 51-71 23-43 (66)
249 TIGR01510 coaD_prev_kdtB pante 20.8 47 0.001 23.2 0.8 12 6-17 7-18 (155)
250 cd07022 S49_Sppa_36K_type Sign 20.8 1.7E+02 0.0036 21.4 3.8 39 74-112 117-164 (214)
251 PF12668 DUF3791: Protein of u 20.7 1.9E+02 0.0042 16.8 5.0 52 53-114 8-62 (62)
252 cd00586 4HBT 4-hydroxybenzoyl- 20.5 1.4E+02 0.003 18.0 2.9 29 3-32 11-39 (110)
253 PRK03094 hypothetical protein; 20.3 1.4E+02 0.0029 19.0 2.7 15 24-43 13-27 (80)
254 TIGR03433 padR_acidobact trans 20.2 90 0.0019 20.0 2.0 30 103-132 42-71 (100)
255 cd01645 RT_Rtv RT_Rtv: Reverse 20.2 1.6E+02 0.0034 21.5 3.5 27 95-121 9-35 (213)
No 1
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-39 Score=274.58 Aligned_cols=124 Identities=45% Similarity=0.754 Sum_probs=121.4
Q ss_pred CCCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 80 (133)
Q Consensus 1 ~y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 80 (133)
|| |||||.||+||+|++++.|+++||+||+| |+|++++|||.+|+|+|.+|.+.|.+|..|+..+++.|+++|+
T Consensus 41 mf-PYpSG~LHvGH~r~Yti~Dv~aRykRm~G-----yNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk 114 (814)
T COG0495 41 MF-PYPSGALHVGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLK 114 (814)
T ss_pred CC-CCCCCCcccCccccccHHHHHHHHHHhcC-----CeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 45 48999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 81 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 81 ~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+||.++||++++.|++|+|.+++||+|.+|+++|+||+++.+|+|||.++
T Consensus 115 ~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~ 164 (814)
T COG0495 115 SLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDG 164 (814)
T ss_pred HhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcC
Confidence 99999999999999999999999999999999999999999999999986
No 2
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.2e-37 Score=268.69 Aligned_cols=123 Identities=46% Similarity=0.786 Sum_probs=121.4
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+||+| ++|++++|||+||+|||.+|++.|++|.++++++++.|++++++|
T Consensus 37 pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 37 FPYPSGALHMGHVRNYTITDVLSRYYRMKG-----YNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred CCCCCCccccchhHHHHHHHHHHHHHHhcC-----CceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|+++||++++.|++|+|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~ 159 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG 159 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCC
Confidence 999999999999999999999999999999999999999999999987
No 3
>KOG0435|consensus
Probab=100.00 E-value=1.1e-38 Score=263.30 Aligned_cols=124 Identities=44% Similarity=0.843 Sum_probs=121.3
Q ss_pred CCCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 80 (133)
Q Consensus 1 ~y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 80 (133)
|| |||+|.|||||.|.|+++|+++||.||+| |+|+.++|||.+|+|.|++|.+.|++|..|+.++++.|+++|+
T Consensus 64 MF-PYPSG~LHiGHvRVYTIsD~laRf~rm~G-----ynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~ 137 (876)
T KOG0435|consen 64 MF-PYPSGALHIGHVRVYTISDILARFYRMKG-----YNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLK 137 (876)
T ss_pred ec-CCCCCcccccceEEEEehHHHHHHHHhcC-----ceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 45 48999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 81 GFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 81 ~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+||+++||++++.|++|+|.+|+|++|.+|+++|++|+.+..|+|||.++
T Consensus 138 ~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~ 187 (876)
T KOG0435|consen 138 SLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDK 187 (876)
T ss_pred HcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccc
Confidence 99999999999999999999999999999999999999999999999875
No 4
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.7e-37 Score=268.50 Aligned_cols=123 Identities=37% Similarity=0.622 Sum_probs=120.6
Q ss_pred CCCCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 3 DCTEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 3 ~~~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
+|||||. |||||+++++++|+++||+||+| ++|++++|||+||+|+|.+|.+.|+.|.+++.++++.|+++|++
T Consensus 118 ~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G-----~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 118 FPYPSGAGLHVGHPEGYTATDILARYKRMQG-----YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHhcC-----CeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 4899996 99999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||+++||++++.|++|.|.+++|++|.+|+++|+||++.++|+|||.++
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~ 241 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 241 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcC
Confidence 9999999999999999999999999999999999999999999999986
No 5
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.7e-37 Score=264.93 Aligned_cols=124 Identities=45% Similarity=0.749 Sum_probs=121.6
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+||+| ++|.+++|||+||+|||.+|++.|++|.++++++++.|+++|++|
T Consensus 40 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 40 FPYPSGGLHMGHVRNYTIGDVIARYKRMQG-----YNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF 131 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (133)
|+++||++++.|++|+|.++++++|.+|+++|+||++.++|+|||.++-
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t 163 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGT 163 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCC
Confidence 9999999999999999999999999999999999999999999999874
No 6
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.1e-36 Score=240.40 Aligned_cols=124 Identities=21% Similarity=0.334 Sum_probs=116.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------CCCh-------HH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------GIDP-------RE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------g~~~-------~~ 66 (133)
+|||||.|||||+++++++|+++||+|++| ++|.+++|+|+||+|||.+|++. +++| ++
T Consensus 9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G-----~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~ 83 (382)
T cd00817 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKG-----YNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWE 83 (382)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcC-----CcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHH
Confidence 689999999999999999999999999999 99999999999999999998764 3454 46
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF 131 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (133)
+++++.+.+++++++||+++||+++++|++|.|.+.++++|.+|+++|+||++.++++|||.++-
T Consensus 84 ~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t 148 (382)
T cd00817 84 WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRT 148 (382)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999863
No 7
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-36 Score=262.86 Aligned_cols=123 Identities=21% Similarity=0.297 Sum_probs=118.1
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC----------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID----------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~----------------~~ 65 (133)
||||||.||+||+++++++|+++||+||+| ++|.+++||||||+|||.++++. |++ ++
T Consensus 49 PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G-----~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~ 123 (975)
T PRK06039 49 PPTANGLPHYGHLLTRTIKDVVPRYKTMKG-----YKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCR 123 (975)
T ss_pred CCCCCCCccHhhhHhhHHHHHHHHHHHhCC-----CcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHH
Confidence 689999999999999999999999999999 99999999999999999999774 654 57
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+|+.++++.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 124 ~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~ 188 (975)
T PRK06039 124 ESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCE 188 (975)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999986
No 8
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-36 Score=258.65 Aligned_cols=123 Identities=30% Similarity=0.472 Sum_probs=118.7
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-cCCChH------------HHHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-HGIDPR------------EWTV 69 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-~g~~~~------------~~~~ 69 (133)
+|||||.|||||+++++++|+++||+||+| ++|.+++|||+||+|||.+|++ .|+++. +|++
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G-----~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~ 120 (800)
T PRK13208 46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRG-----YNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTD 120 (800)
T ss_pred cCCCCCCccHHHHHhHHHHHHHHHHHHcCC-----CcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 9999999999999999999987 488765 6999
Q ss_pred HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
++.+.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 121 ~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 181 (800)
T PRK13208 121 EDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCE 181 (800)
T ss_pred HHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 9
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=6.5e-36 Score=258.86 Aligned_cols=123 Identities=26% Similarity=0.385 Sum_probs=117.5
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC------h----------H
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID------P----------R 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~------~----------~ 65 (133)
||||||.|||||+++++++|+++||+||+| ++|++++||||||+|||.+|++. |++ + +
T Consensus 44 pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 44 PPYANGSIHLGHALNKILKDIILRYKTMQG-----FNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 689999999999999999999999999999 99999999999999999999765 654 3 4
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+++.++++.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~ 183 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCR 183 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999986
No 10
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-35 Score=258.83 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=115.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCC------------hHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GID------------PRE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~------------~~~ 66 (133)
||||||.||||||+|++++|+++||+||+| ++|.+++||||||+|||.++++. |.+ +++
T Consensus 62 PPyanG~lHiGHaln~~lkDii~Ry~rm~G-----~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 62 PPYANGNIHIGHALNKILKDVIVRSKQMLG-----FDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 789999999999999999999999999999 99999999999999999988654 332 256
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
++.++++.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~ 200 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVER 200 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999986
No 11
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=257.35 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=117.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc------CCChH-------HHHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH------GIDPR-------EWTV 69 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~------g~~~~-------~~~~ 69 (133)
|||+||.||||||++++++|+++||+||+| ++|.+++||||||+|||.+|++. ++++. ++++
T Consensus 57 pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G-----~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 57 PPYANGDIHIGHALNKILKDIIVKSKTMSG-----FDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHccC-----CcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 99999999999999999999874 56664 5899
Q ss_pred HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
++++.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~ 192 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCG 192 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 12
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=3.7e-35 Score=246.15 Aligned_cols=123 Identities=29% Similarity=0.490 Sum_probs=110.1
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC----------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID----------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~----------------~~ 65 (133)
|||+||.||+||+++++++|+++||+||+| ++|++++||||||+|||.++++. |.. ++
T Consensus 31 PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G-----~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~ 105 (601)
T PF00133_consen 31 PPYANGDLHIGHALNKTIKDIIARYKRMQG-----YNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECR 105 (601)
T ss_dssp --BTSSS-BHHHHHHHHHHHHHHHHHHCTT-----SEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHhCC-----cEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhc
Confidence 689999999999999999999999999999 99999999999999999998763 331 47
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+|++++++.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 106 ~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~ 170 (601)
T PF00133_consen 106 EWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQ 170 (601)
T ss_dssp HHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTT
T ss_pred chhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999986
No 13
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-35 Score=250.21 Aligned_cols=123 Identities=24% Similarity=0.355 Sum_probs=116.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCC------------hHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GID------------PRE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~------------~~~ 66 (133)
|||+||.||||||++.++.|+++||+||+| |+|++++|+||+|+++|.++++. |++ .++
T Consensus 41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G-----~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~we 115 (877)
T COG0525 41 PPNVTGSLHMGHALNYTLQDILARYKRMRG-----YNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWE 115 (877)
T ss_pred CCCCCCcccchhhhhHHHHHHHHHHHHcCC-----CeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Confidence 789999999999999999999999999999 99999999999999999888652 655 278
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|.+++.+.|.++|++||++.||++++.|+||.+.++|+++|.+|+++|+||+++++|+|||.++
T Consensus 116 Wk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~ 179 (877)
T COG0525 116 WKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCR 179 (877)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 14
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=6e-35 Score=254.67 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=115.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH----cCCC------------hHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ----HGID------------PRE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~----~g~~------------~~~ 66 (133)
||||||.|||||+++++++|+++||+||+| ++|++++|||+||+|+|.++++ .|++ +++
T Consensus 96 PP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 96 PPNVTGSLHMGHAMFVTLEDIMVRYNRMKG-----RPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHhcC-----CeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 799999999999999999999999999999 9999999999999999887754 3654 367
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|++++.+.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~ 234 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQ 234 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999976
No 15
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-34 Score=239.84 Aligned_cols=123 Identities=22% Similarity=0.289 Sum_probs=119.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
.|||||+|||||+++++.+|+++||+|++| ++|.|++|+|+||+||+.+|+++|++|+++++++...++++++.|
T Consensus 13 lpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G-----~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 13 LPYPNGPPHLGHLYTYLAADVYARYLRLRG-----YEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhcC-----CeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
+|++| .+.+|+++.|.+.+|++|.+|+++|+||.+...++||++++=|
T Consensus 88 ~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~f 135 (558)
T COG0143 88 NISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERF 135 (558)
T ss_pred CCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccccc
Confidence 99888 7889999999999999999999999999999999999998643
No 16
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=5.6e-35 Score=253.07 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=116.6
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----CCCh------------HH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH----GIDP------------RE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~----g~~~------------~~ 66 (133)
|||+||.|||||+++++++|+++||+||+| ++|++++||||||+|||.++++. |.++ ++
T Consensus 41 pPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~ 115 (861)
T TIGR00422 41 PPNVTGSLHIGHALNWSIQDIIARYKRMKG-----YNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWE 115 (861)
T ss_pred CCCCCCCCcHHHhHHHHHHHHHHHHHHhcC-----CcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHH
Confidence 689999999999999999999999999999 99999999999999999888653 5554 58
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|++++.+.+++++++||+++||++++.|++|.|.++|+++|.+|+++|+||++.++|+|||.++
T Consensus 116 ~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~ 179 (861)
T TIGR00422 116 WKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLN 179 (861)
T ss_pred HHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999986
No 17
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=7.6e-35 Score=255.81 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=116.5
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-----cCCCh------------H
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-----HGIDP------------R 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-----~g~~~------------~ 65 (133)
||||||.|||||+++++++|+++||+||+| ++|++++||||||+|+|.++++ .|+++ +
T Consensus 136 pPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 136 PPNVTGALHIGHALTAAIEDTIIRWKRMSG-----YNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCC-----CcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 689999999999999999999999999999 9999999999999999998865 35543 5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+|++++++.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~ 275 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLR 275 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999986
No 18
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-35 Score=252.58 Aligned_cols=123 Identities=20% Similarity=0.289 Sum_probs=115.5
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH----cCCCh------------HH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ----HGIDP------------RE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~----~g~~~------------~~ 66 (133)
|||+||.|||||+++++++|+++||+||+| ++|++++||||||+|+|.++++ .|+++ ++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~ 118 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQG-----YNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWE 118 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHH
Confidence 789999999999999999999999999999 9999999999999998877654 36664 46
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|++++.+.+++++++||++.||++++.|++|.|.++|+++|.+|+++|+||++.++|+|||.++
T Consensus 119 w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~ 182 (874)
T PRK05729 119 WKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQ 182 (874)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999976
No 19
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.6e-34 Score=224.85 Aligned_cols=123 Identities=42% Similarity=0.676 Sum_probs=119.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.+||||+++++++|+++||+|++| ++|.+++|+||||+||+.+|++.|++|.++++++.+.+++++++|
T Consensus 8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G-----~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~l 82 (314)
T cd00812 8 FPYPSGALHVGHVRTYTIGDIIARYKRMQG-----YNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRM 82 (314)
T ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHcC-----CCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++||..++.|++|.|.+.++++|.+|+++|+||+++++++||.+++
T Consensus 83 gi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (314)
T cd00812 83 GFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLD 130 (314)
T ss_pred ccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccc
Confidence 999999889999999999999999999999999999999999996654
No 20
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.5e-34 Score=251.07 Aligned_cols=123 Identities=20% Similarity=0.336 Sum_probs=115.1
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-------CCCh-------HHHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-------GIDP-------REWT 68 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-------g~~~-------~~~~ 68 (133)
||||||.||||||++.+++|+++||+||+| ++|.+++||||||+|||.++++. +++| ++++
T Consensus 40 PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G-----~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 40 PPYANGDLHIGHALNKILKDFINRYQLLQG-----KKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhcC-----CccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999 99999999999999999988542 3454 5668
Q ss_pred HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+++++.|++++++||++.||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~ 176 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSR 176 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999985
No 21
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2.6e-34 Score=250.40 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=116.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------------C------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------G------ 61 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------g------ 61 (133)
+|||||.|||||+++++++|+++||+||+| ++|++++|||+||+||+..|++. +
T Consensus 33 pPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G-----~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i 107 (938)
T TIGR00395 33 YPYLNGVMHAGHCRTFTIPEVSARFERMKG-----KNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL 107 (938)
T ss_pred CCCCCCCcccchhhhhhHHHHHHHHHHhcC-----CccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence 689999999999999999999999999999 99999999999999999887651 1
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 62 ---IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 62 ---~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
.+|++|++++.+.+++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~ 179 (938)
T TIGR00395 108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDG 179 (938)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCC
Confidence 346889999999999999999999999999999999999999999999999999999999999999986
No 22
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-34 Score=251.62 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=115.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-----cCCC------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-----HGID------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-----~g~~------------~~ 65 (133)
||||||.|||||+++++++|+++||+||+| ++|++++|||+||+|+|.++++ .|.+ ++
T Consensus 56 PP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 56 PPNVTGSLHLGHALTATLQDVLIRWKRMSG-----FNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred CCCCCCcchHHHHHhhHHHHHHHHHHHhcC-----CcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 789999999999999999999999999999 9999999999999999987764 2333 35
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+|++++.+.|++++++||+++||++++.|++|+|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~ 195 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCR 195 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999986
No 23
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=250.22 Aligned_cols=123 Identities=19% Similarity=0.256 Sum_probs=114.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-----cCCCh------------H
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-----HGIDP------------R 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-----~g~~~------------~ 65 (133)
||||||.|||||+++++++|+++||+||+| ++|++++|||+||+|++.++++ .|+++ +
T Consensus 68 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G-----~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 68 PPNVTGYLHIGHALTGAIQDSLIRYHRMKG-----DETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHhcC-----CcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 689999999999999999999999999999 9999999999999999766543 35442 5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+|++++.+.|+++|++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~ 207 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLK 207 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999986
No 24
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.9e-34 Score=229.64 Aligned_cols=123 Identities=22% Similarity=0.286 Sum_probs=111.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++.+|+++||+|++| ++|.+++|+|+||+||+.+|+++|++|.++++++.+.++++++++
T Consensus 7 ~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G-----~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~ 81 (391)
T PF09334_consen 7 IPYPNGDLHLGHLYPYLAADVLARYLRLRG-----HDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEAL 81 (391)
T ss_dssp EEETSSS-BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhhcc-----cceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
||++| .+.+|+++.|.+.|+++|++|+++|+||+++..++||+.++-|
T Consensus 82 ~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~f 129 (391)
T PF09334_consen 82 NISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERF 129 (391)
T ss_dssp T---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEE
T ss_pred CCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcc
Confidence 99887 6789999999999999999999999999999999999998643
No 25
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=8.7e-34 Score=237.75 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=118.4
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+|++| ++|.+++|+||||+||+.+|++.|++|.++|+++.+.+++.+++|
T Consensus 77 ~pY~NG~~HiGHa~~~~~aDviaR~~r~~G-----~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 77 LYYVNAPPHMGSAYTTIAADSIARFQRLLG-----KKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred CCCCCCCCchhccHHHHHHHHHHHHHHhcC-----CceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 579999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
||++| .+++|++|.|.+.|+++|.+|+++|+||+++++++|||.++=|
T Consensus 152 ~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f 199 (616)
T PLN02224 152 DIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEY 199 (616)
T ss_pred CCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCC
Confidence 99665 7889999999999999999999999999999999999998743
No 26
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.9e-34 Score=252.12 Aligned_cols=123 Identities=23% Similarity=0.338 Sum_probs=116.6
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH-cCCC----------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ-HGID----------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~-~g~~----------------~~ 65 (133)
|||+||.||+||+++++++|+++||+||+| ++|.+++||||||+|||.++++ .|++ ++
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~ 120 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTG-----HHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECR 120 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCC-----CcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHH
Confidence 789999999999999999999999999999 9999999999999999999864 4653 36
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+++.++.+.+++++++||++.||+++|.|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus 121 ~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~ 185 (1159)
T PLN02882 121 SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACK 185 (1159)
T ss_pred HHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999975
No 27
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-34 Score=246.31 Aligned_cols=123 Identities=25% Similarity=0.365 Sum_probs=116.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC---------------hHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID---------------PRE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~---------------~~~ 66 (133)
|||+||.+|||||.|.+++|++.||+.|+| |+|.+++||||||+|||.++++. |++ .++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G-----~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~ 131 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQG-----YDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCRE 131 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccC-----CcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHH
Confidence 799999999999999999999999999999 99999999999999999998764 522 367
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
++.++++.+++++++||++.||+++|.|++++|.+.++++|++|+++|++|++.++|+|||+|.
T Consensus 132 ~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~ 195 (933)
T COG0060 132 FALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCE 195 (933)
T ss_pred HHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCC
Confidence 8889999999999999999999999999999999999999999999999999999999999985
No 28
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=5.8e-34 Score=251.72 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=116.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCC----------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GID----------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~----------------~~ 65 (133)
||||||.||+|||++.+++|+++||+||+| ++|.+++||||||+|||.++++. |++ ++
T Consensus 110 PPyanG~lHiGHal~~tikDii~Ry~rm~G-----~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~ 184 (1205)
T PTZ00427 110 PPFATGLPHYGHLLAGIIKDCVTRYFYQCG-----FSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCR 184 (1205)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHcCC-----CeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHH
Confidence 689999999999999999999999999999 99999999999999999999752 321 37
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+++.++.+.+++++++||++.||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus 185 ~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~ 249 (1205)
T PTZ00427 185 GIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCN 249 (1205)
T ss_pred HHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999985
No 29
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.5e-34 Score=223.67 Aligned_cols=118 Identities=26% Similarity=0.392 Sum_probs=113.7
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCCh----------------H
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GIDP----------------R 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~~----------------~ 65 (133)
||||||++||||+++++++|+++||+|++| ++|.+++|+||||+||+.+|++. |+++ +
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G-----~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~ 83 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQG-----YYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCR 83 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcC-----CccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHH
Confidence 789999999999999999999999999999 99999999999999999999886 7654 7
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeee
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
++++++.+.+++++++|||+.||+.++.|++++|.+.++++|.+|+++|+||+++++++|
T Consensus 84 ~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 84 EFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 999999999999999999999999999999999999999999999999999999999998
No 30
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=2.6e-33 Score=219.53 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=117.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+|++| ++|.+++|+||||+||+.+|+++|++|+++++.+.+.+++++++|
T Consensus 8 ~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G-----~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 8 LPYVNGVPHLGHLYGTVLADVFARYQRLRG-----YDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhCC-----CcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF 131 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (133)
||.+| .+.+|+++.|.+.++++|++|.++|++|+++..++|||.++-
T Consensus 83 gI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~ 129 (319)
T cd00814 83 NISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCER 129 (319)
T ss_pred CCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCc
Confidence 99776 567788999999999999999999999999999999999874
No 31
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2e-33 Score=219.27 Aligned_cols=120 Identities=26% Similarity=0.427 Sum_probs=114.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCC-------------ChHHHHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGI-------------DPREWTV 69 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~-------------~~~~~~~ 69 (133)
+|||||.+||||+++++++|+++||+|++| ++|.+++|+|+||+||+.+|++.+. +++++++
T Consensus 8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G-----~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T cd00668 8 PPYANGSLHLGHALTHIIADFIARYKRMRG-----YEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVE 82 (312)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhCC-----CCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 9999999999999999999999877 7899999
Q ss_pred HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecC
Q psy6621 70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNL 127 (133)
Q Consensus 70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~ 127 (133)
++.+.|++++++|||+.||+.++.|++|.|.+.++++|++|+++|+||++.++|..++
T Consensus 83 ~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~ 140 (312)
T cd00668 83 EMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITE 140 (312)
T ss_pred HHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeee
Confidence 9999999999999999999999999999999999999999999999999998876544
No 32
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.8e-33 Score=238.32 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=117.1
Q ss_pred CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
+|||||.|||||+++ ++.+|+++||+|++| ++|+|++|+|+||+||+.+|++.|++|+++++++.+.+++++++
T Consensus 25 ~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G-----~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 25 LPYVNNVPHLGNIIGCVLSADVFARYCRLRG-----YNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHhCC-----CceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999997 678999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF 131 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (133)
|||++| .+++|++|.|.+.++++|.+|+++|+||++...++|||.++=
T Consensus 100 l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~ 147 (801)
T PLN02610 100 FDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQK 147 (801)
T ss_pred cCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCC
Confidence 999877 778999999999999999999999999999999999999764
No 33
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.1e-33 Score=231.22 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=117.1
Q ss_pred CCCCCCcCcchHHHHH-HHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 3 DCTEEELTCLGGVVVK-THSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 3 ~~~png~lHlGH~~~~-~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
+|||||.|||||++++ +++|+++||+|++| ++|.+++|+||||+||+.+|++.|++|.++++++.+.|++++++
T Consensus 11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 11 WPYANGPLHLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999997 99999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF 131 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (133)
|||+.| .+++|++|+|.+.++++|.+|+++|+||++.++++|||.++-
T Consensus 86 l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~ 133 (556)
T PRK12268 86 LGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGR 133 (556)
T ss_pred cCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCc
Confidence 999776 467899999999999999999999999999999999999874
No 34
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=233.57 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=118.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+|++| ++|.+++|+|+||+||+.+|+++|++|.++++++.+.+++++++|
T Consensus 10 ~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 10 LPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
||++| .+++|++|.|.+.++++|.+|+++|+||+++.+++|||.++-|
T Consensus 85 ~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~ 132 (673)
T PRK00133 85 GISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMF 132 (673)
T ss_pred CCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCC
Confidence 99887 4678999999999999999999999999999999999998744
No 35
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.98 E-value=5.2e-32 Score=224.12 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=117.5
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++.+|+++||+|++| ++|.+++|+||||+||+.+|+++|++|.++++++.+.+++++++|
T Consensus 7 ~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G-----~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 7 LPYANGKPHLGHAYTTILADVYARYKRLRG-----YEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
||++|+ +.+|+++.|.+.++++|.+|.++|+||+++++++|||.++-|
T Consensus 82 gI~~D~--~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~ 129 (530)
T TIGR00398 82 NISFDR--FIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMF 129 (530)
T ss_pred CCCCCC--CccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcC
Confidence 998874 567899999999999999999999999999999999997643
No 36
>PLN02959 aminoacyl-tRNA ligase
Probab=99.98 E-value=3e-32 Score=239.92 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=110.1
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-------CCC------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-------GID------------ 63 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-------g~~------------ 63 (133)
+||+||.|||||+++++++|+++||+||+| ++|+|++||||||+||+..|++. |..
T Consensus 53 pPY~NG~lHiGHa~t~t~~D~i~Rykrm~G-----~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~ 127 (1084)
T PLN02959 53 YPYMNGLLHLGHAFSLSKLEFAAAYHRLRG-----ANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAA 127 (1084)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 489999999999999999999999999999 99999999999999999987542 321
Q ss_pred -------------------------------------------------------hHHHHHHHHHHHHHHHHhcCccccc
Q psy6621 64 -------------------------------------------------------PREWTVGNIATMKSQLQGFGCKFNW 88 (133)
Q Consensus 64 -------------------------------------------------------~~~~~~~~~~~~~~~l~~lgi~~d~ 88 (133)
|..|++.+...++++|++||++.||
T Consensus 128 ~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW 207 (1084)
T PLN02959 128 AVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDW 207 (1084)
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeC
Confidence 1224444557789999999999999
Q ss_pred CCceecCC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 89 ESELATCD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 89 ~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
.+++.|++ |.|.+++++.|.+|+++|+||++.++|+|||.++
T Consensus 208 ~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~ 251 (1084)
T PLN02959 208 RRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDG 251 (1084)
T ss_pred CCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCC
Confidence 99999998 9999999999999999999999999999999986
No 37
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=1.2e-31 Score=226.62 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=117.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.+||||+++++.+|+++||+|++| ++|.+++|+|+||+||+.+|+++|++|+++++.+.+.|++++++|
T Consensus 12 ~py~ng~~HiGH~~~~~~aDv~~R~~r~~G-----~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 12 IYYPNGKPHIGHAYTTIAADALARYKRLQG-----YDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred CCCCCCCcccccchHHHHHHHHHHHHHhcC-----CceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
||++| .+++|+++.|.+.++++|.+|.++|+||+++..++||+.++-|
T Consensus 87 gI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~ 134 (648)
T PRK12267 87 DISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETF 134 (648)
T ss_pred CCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCcc
Confidence 99887 5678999999999999999999999999999999999987643
No 38
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.8e-31 Score=219.61 Aligned_cols=121 Identities=19% Similarity=0.243 Sum_probs=116.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.+||||+++++.+|+++||+|++| ++|.+++|+||||+||+.+|++.|++|.++++.+.+.++++|++|
T Consensus 9 ~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G-----~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRG-----YDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||.+| .+++|+++.|.+.|+++|.+|.++|++|++.++++||+.++
T Consensus 84 ~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~ 129 (511)
T PRK11893 84 NISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCE 129 (511)
T ss_pred CCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeecccccc
Confidence 99877 45789999999999999999999999999999999999875
No 39
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=3.2e-31 Score=230.34 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=109.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------------CC---------ChH
Q psy6621 10 TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------GI---------DPR 65 (133)
Q Consensus 10 lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------g~---------~~~ 65 (133)
|||||+++++++|+++||+||+| ++|++++|||+||+|||..|++. |+ +|+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G-----~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~ 75 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRG-----YNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPE 75 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCC-----CcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHH
Confidence 79999999999999999999999 99999999999999999887532 43 468
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+|++++.+.+++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 76 ~~~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~ 140 (897)
T PRK12300 76 YIVEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDN 140 (897)
T ss_pred HHHHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999986
No 40
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=1.7e-29 Score=201.83 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| +++||||+|++|.+|+++||+|++| ++|.+++|+||||+||+.+|+++|++|+++++++.+.+.++
T Consensus 12 ~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G-----~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 12 MYVCGITPYDATHLGHAATYLAFDLVNRVWRDAG-----HDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred EEecCCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6999988 6899999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCc-ccccCCceecCChhHHHHHHHHHHHHHHCCCeEEece----eeeecCCC
Q psy6621 79 LQGFGC-KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEV----DYSQNLPT 129 (133)
Q Consensus 79 l~~lgi-~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~v~~~~~~ 129 (133)
+++||| ..| .+.+|++ +++.+++++++|.++|++|+++. +||||+..
T Consensus 87 ~~~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 87 MEALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred HHHhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 999998 343 4445665 48999999999999999999998 89999875
No 41
>PLN02946 cysteine-tRNA ligase
Probab=99.96 E-value=1.5e-29 Score=209.53 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=114.3
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| +.+||||+|++|.+|+++||+++.| ++|.+++|+||+|+||+.+|++.|++|.++++++.+.+.++
T Consensus 83 ~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~G-----y~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d 157 (557)
T PLN02946 83 MYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLG-----YEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD 157 (557)
T ss_pred EEEeCCccCCCCccccchhhHHHHHHHHHHHhcC-----CcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7999999 5899999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+++|||.. ..+.|..++|++.+++++++|+++|++|++++.||||+..
T Consensus 158 ~~~LnI~~---p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 158 MAYLHCLP---PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK 205 (557)
T ss_pred HHHCCCCC---CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence 99999974 3456667789999999999999999999999999999874
No 42
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.96 E-value=6.7e-29 Score=203.09 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=108.6
Q ss_pred CCCCCC--CCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTE--EELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~p--ng~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+| +|.+||||+|+++++|+++||+|++| ++|.+++|+||+|++|+.+|++.|++|+++++.+.+.|+++
T Consensus 26 ~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G-----~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 26 MYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred EEEeCCccCCCcccccchhHHHHHHHHHHHHhcC-----CceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 466655 58999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcc-cccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 79 LQGFGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~-~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+++|||. .|+.. +++ .|.+.+++++++|+++|++|+++++||||+..
T Consensus 101 ~~~Lgi~~~d~~~--r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~ 148 (463)
T PRK00260 101 MDALNVLPPDIEP--RAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRK 148 (463)
T ss_pred HHHcCCCCCCccc--ccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccc
Confidence 9999994 56532 222 37889999999999999999999999999875
No 43
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.96 E-value=7.1e-29 Score=202.98 Aligned_cols=121 Identities=13% Similarity=0.047 Sum_probs=111.1
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| |.+||||+|+++.+|+++||+|++| ++|.+++|+||+|+||+.+|++.|++|.++++.+.+.+.++
T Consensus 24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G-----~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~d 98 (465)
T TIGR00435 24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLG-----YKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFED 98 (465)
T ss_pred EEEecCccCCCcccccchHHHHHHHHHHHHHHcC-----CcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5777655 7999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEec-eeeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-VDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~v~~~~~~ 129 (133)
+++|||++|...+..| .|.+.+++++++|+++|++|+++ +.||||+.+
T Consensus 99 l~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~ 147 (465)
T TIGR00435 99 MKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK 147 (465)
T ss_pred HHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc
Confidence 9999999885433223 58899999999999999999998 999999876
No 44
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.96 E-value=8.2e-29 Score=199.06 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| +.+||||+|++|.+|+++||+|+.| ++|.+++|+||||+||+.+|+++|++|+++++.+.+.+.++
T Consensus 39 ~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G-----~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAG-----HRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred EEEeCCccCCCcccccchHHHHHHHHHHHHHhcC-----CceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6899988 6899999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEece----eeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEV----DYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~v~~~~~~ 129 (133)
+++|||... +.+.++++ +++.++++|++|+++|+||++.. +||||+..
T Consensus 114 ~~~Lni~~~-d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 114 MEALRVLPP-RDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred HHHcCCCCC-CcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 999998632 23445555 37999999999999999999886 89999865
No 45
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=3.9e-28 Score=203.37 Aligned_cols=121 Identities=16% Similarity=0.058 Sum_probs=112.5
Q ss_pred CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+||. .+||||+|++|..|+++||+++.| ++|.+++|+||+|+||+.+|++.|++|.++++.+.+.+.++
T Consensus 251 mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~G-----y~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 251 MYVCGMTVYDYCHLGHARVMVVFDMIARWLRECG-----YPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred EEecCCcCCCCCcccchhHHHHHHHHHHHHHHcC-----CceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 79999995 799999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~ 129 (133)
+++|||..+- +.+...+|++.+++++++|+++|++|++ .+.||||+.+
T Consensus 326 ~~~LnI~~p~---~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 326 ADALGVLRPD---IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE 374 (699)
T ss_pred HHHcCCCCCc---EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence 9999998862 3455568999999999999999999987 4689999874
No 46
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=6.4e-28 Score=197.67 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=110.3
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecc----------cCCCCCHHHHHHHHHcCCChHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPM----------GWDAFGLPAENAAHQHGIDPREWT 68 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~----------G~D~~G~~i~~~a~~~g~~~~~~~ 68 (133)
||+|+|| +.+||||+|++|.+|+++||+++.| ++|.+++ |.|+||++|+.+|++.|++|.+++
T Consensus 26 mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a 100 (490)
T PRK14536 26 LYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLG-----YRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA 100 (490)
T ss_pred EEeeCCccCCCcccchhHHHHHHHHHHHHHHhcC-----CceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence 7999988 5899999999999999999999999 9999998 555559999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+.+.+.+.+++++|||..+- +.+..++|++.++++|++|+++|++|++.+.||||+.+
T Consensus 101 ~~~~~~f~~d~~~Lni~~~~---~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~ 158 (490)
T PRK14536 101 AHYTAAFFRDTARLNIERPS---IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT 158 (490)
T ss_pred HHHHHHHHHHHHHcCCCCCc---eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc
Confidence 99999999999999998752 22445789999999999999999999999999999965
No 47
>KOG0433|consensus
Probab=99.95 E-value=6.2e-28 Score=201.26 Aligned_cols=120 Identities=24% Similarity=0.359 Sum_probs=111.5
Q ss_pred CCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHH-HHHHHc------CCCh-------HHHHHHH
Q psy6621 6 EEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAE-NAAHQH------GIDP-------REWTVGN 71 (133)
Q Consensus 6 png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~-~~a~~~------g~~~-------~~~~~~~ 71 (133)
+||.||||||+|.|++||+.|++-++| ..|++++||||||+||| .+|.+. .++| +.++.+.
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg-----~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~A 140 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQG-----KSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEA 140 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcC-----ceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHH
Confidence 799999999999999999999999999 99999999999999999 466432 3444 5678999
Q ss_pred HHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 72 IATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 72 ~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
++.+++.++++||..||+++|.|++|+|...+.++|.+|+++|+||++.+||||+|+++
T Consensus 141 Ik~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSR 199 (937)
T KOG0433|consen 141 IKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSR 199 (937)
T ss_pred HHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcch
Confidence 99999999999999999999999999999999999999999999999999999999986
No 48
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=9.6e-28 Score=196.04 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=111.3
Q ss_pred CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC----------CHHHHHHHHHcCCChHHHH
Q psy6621 1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF----------GLPAENAAHQHGIDPREWT 68 (133)
Q Consensus 1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~----------G~~i~~~a~~~g~~~~~~~ 68 (133)
||+|+||. .+||||+|++|.+|+++||++++| ++|.+++|++|. |++|+.+|++.|++|.+++
T Consensus 24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G-----~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLK-----YNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcC-----CceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 79999995 799999999999999999999999 999997666666 8999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+++.+.+.+++++|||..+. .++| .++|++.+++++++|+++|++|+..+.||||+.+
T Consensus 99 ~~~~~~f~~d~~~Lni~~~~--~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYPD--KVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred HHHHHHHHHHHHHcCCCCCc--eecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 99999999999999998873 3344 4689999999999999999999999999999976
No 49
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.95 E-value=6.4e-28 Score=203.58 Aligned_cols=121 Identities=11% Similarity=0.105 Sum_probs=112.2
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCC-hHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGID-PREWTVGNIATMK 76 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~-~~~~~~~~~~~~~ 76 (133)
||+|+|| +.+||||||++|..|++.||++ +.| |+|.|++|+||+|++|+.+|++.|++ +.++++.+.+.|.
T Consensus 63 ~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~G-----y~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 63 WYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFG-----YDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred EEEeCCCccCCcccccchHHHHHHHHHHHHHHhcC-----CceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 6999999 5899999999999999999999 999 99999999999999999999999999 9999999999999
Q ss_pred HHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 77 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 77 ~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+++++|||..+ ..+++. .+|++.+++++++|+++|++|+.+++||||++.
T Consensus 138 ~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~ 187 (651)
T PTZ00399 138 EDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA 187 (651)
T ss_pred HHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh
Confidence 99999999875 223333 579999999999999999999999999999874
No 50
>KOG0436|consensus
Probab=99.95 E-value=4.7e-27 Score=186.90 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=117.1
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
.|||..+||||+++.+++|+++||++++| ..|.+.+|+|+||++|+.+|+..|.+|.++|+...+.+.+.++.+|
T Consensus 48 fYvNAaPHlGhlYS~llaDai~R~q~lkg-----~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~g 122 (578)
T KOG0436|consen 48 FYVNAAPHLGHLYSTLLADAIARFQRLKG-----KKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAG 122 (578)
T ss_pred eecCCCcchhHHHHHHHHHHHHHHHhhcC-----CceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhC
Confidence 37899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 84 CKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 84 i~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
|+++ .+++|++|+|...|+++|..+.++|+||++...-|||+++.=|
T Consensus 123 i~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf 169 (578)
T KOG0436|consen 123 IAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETF 169 (578)
T ss_pred cchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEecccccc
Confidence 9776 8899999999999999999999999999999999999998643
No 51
>KOG0432|consensus
Probab=99.94 E-value=1.4e-26 Score=195.92 Aligned_cols=122 Identities=20% Similarity=0.292 Sum_probs=112.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-----CCC------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-----GID------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-----g~~------------~~ 65 (133)
|||+||.||||||.+.++.|+++||.||.| +.|.+++|+|+.|+.++.-+++. |.+ .+
T Consensus 83 PPNVTG~LHiGHALt~aiqD~i~R~~rm~G-----~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw 157 (995)
T KOG0432|consen 83 PPNVTGSLHIGHALTVAIQDALARYNRMHG-----YQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVW 157 (995)
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHhcC-----CeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHH
Confidence 577889999999999999999999999999 99999999999999998766542 233 37
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+|.+++...|.++|++||.++||++++.|++|...++|.+.|.+|+++|+||++.+.|+|||..
T Consensus 158 ~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L 221 (995)
T KOG0432|consen 158 EWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPAL 221 (995)
T ss_pred HHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhH
Confidence 8899999999999999999999999999999999999999999999999999999999999864
No 52
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.94 E-value=1.6e-26 Score=178.64 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=103.2
Q ss_pred CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+||. .+||||+|++|..|++.|+++..| ++|.+++|++|.+++|..+|++.|+++.++++.+.+++.++
T Consensus 11 ~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g-----~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d 85 (300)
T PF01406_consen 11 MYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLG-----YDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFED 85 (300)
T ss_dssp EEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT------EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcC-----CeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 79999995 799999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEec-eeeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE-VDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~v~~~~~~ 129 (133)
|++|||......+..| ++++.+++++++|+++|++|... +.||||+..
T Consensus 86 m~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 86 MKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp HHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred HHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 9999998753333333 48999999999999999999999 999999873
No 53
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.94 E-value=3.2e-26 Score=170.35 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=105.2
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
.|||||+|||||+|+++++|+++|+++++| ++|.++.++||+|++|+..|++.+. ++++++.+.+.+.+++++|
T Consensus 8 spN~~~~~HiGH~R~~vigD~l~R~l~~~G-----~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~~L 81 (212)
T cd00671 8 SANPTGPLHVGHLRNAIIGDSLARILEFLG-----YDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYGRL 81 (212)
T ss_pred CCCCCCCccccccHHHHHHHHHHHHHHHCC-----CcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999 9999999999999999999976643 8999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~ 128 (133)
||++|. ..++++ +.+.+++++++|.++|++|+.++.+++|+.
T Consensus 82 ~i~~d~--~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~ 123 (212)
T cd00671 82 DVRFDV--WFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLT 123 (212)
T ss_pred CCcCce--ecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEech
Confidence 999872 224444 378899999999999999999999999974
No 54
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.9e-25 Score=179.44 Aligned_cols=121 Identities=16% Similarity=0.080 Sum_probs=110.4
Q ss_pred CCCCCCCC--cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+||. .+||||+|++|..|++.||++..| |.|.|+.+++|.++||..+|.+.|.++.++++.+++++.++
T Consensus 25 mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~G-----y~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D 99 (464)
T COG0215 25 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLG-----YKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFED 99 (464)
T ss_pred EEecCCccCCccccccCcceehHHHHHHHHHHhC-----CeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 89999996 799999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~ 129 (133)
+++|||...-..+..| +|+..+.+++++|+++|++|.. +++||||+..
T Consensus 100 ~~aL~v~~p~~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~ 148 (464)
T COG0215 100 MDALNVLPPDIEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK 148 (464)
T ss_pred HHHhCCCCCcccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEeccc
Confidence 9999995422234444 4889999999999999999998 6899999864
No 55
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.91 E-value=1.9e-24 Score=161.23 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=79.7
Q ss_pred CCCCC--CCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCT--EEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~--png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+ |+|++||||+++++++|+++||+|++| ++|.+++|+|+||+||+.+|+++|++|+++++++.+.++++
T Consensus 23 ~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G-----~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 23 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLG-----YKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred EEEeCCccCCCcccccchhHHHHHHHHHHHHhcC-----CeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35555 558999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCccc-ccCCceec
Q psy6621 79 LQGFGCKF-NWESELAT 94 (133)
Q Consensus 79 l~~lgi~~-d~~~~~~T 94 (133)
+++|||+. | .+.+|
T Consensus 98 ~~~l~i~~~d--~~~rt 112 (213)
T cd00672 98 MKALNVLPPD--VVPRV 112 (213)
T ss_pred HHHcCCCCCC--cceee
Confidence 99999987 5 44455
No 56
>KOG0434|consensus
Probab=99.90 E-value=1.9e-23 Score=173.99 Aligned_cols=123 Identities=21% Similarity=0.303 Sum_probs=113.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH-HcCCC----------------hH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH-QHGID----------------PR 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~-~~g~~----------------~~ 65 (133)
||.+||.+|-||+.+.+++|+..||..+.| +.|...+||||||+|+|.... +.|++ .+
T Consensus 46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G-----~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR 120 (1070)
T KOG0434|consen 46 PPFATGLPHYGHILASTIKDIVTRYATQTG-----HHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECR 120 (1070)
T ss_pred CccccCCCccchhhhhhHHHHHHHHhhccc-----cceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHH
Confidence 688999999999999999999999999999 999999999999999998764 35654 36
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
.++-.+..+++++..|||-+.|+.+.|.|+.|.+.+.|+|+|++|+++|++|++-+-..|+..+.
T Consensus 121 ~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~ 185 (1070)
T KOG0434|consen 121 KIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACT 185 (1070)
T ss_pred HHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccC
Confidence 77888999999999999999999999999999999999999999999999999999999987653
No 57
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=6.1e-23 Score=169.61 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=106.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
.|||||++||||+|+++++|+++|++++.| ++|.++.++||+|.++...+.+.+..++++++.+.+.+++++++|
T Consensus 119 spnp~g~lHiGH~R~~iigD~laR~lr~~G-----~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~L 193 (507)
T PRK01611 119 SANPTGPLHVGHLRSAVIGDALARILEFAG-----YDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRL 193 (507)
T ss_pred CCCCCCCCcCCchHHHHHHHHHHHHHHHcC-----CcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999 999999999999999999888887788999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeE-EeceeeeecC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY-RKEVDYSQNL 127 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy-~~~~~v~~~~ 127 (133)
||.+| ....+.+..+.+.+++++++|.++|++| +.++.++++.
T Consensus 194 gI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~ 237 (507)
T PRK01611 194 GVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRL 237 (507)
T ss_pred CCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEc
Confidence 99997 2234555556678999999999999999 8888898875
No 58
>KOG2007|consensus
Probab=99.83 E-value=2.4e-20 Score=151.04 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=103.4
Q ss_pred CCCCCCCC--cCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHH--cCCCh---HHHHHHHH
Q psy6621 1 MYDCTEEE--LTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQ--HGIDP---REWTVGNI 72 (133)
Q Consensus 1 ~y~~~png--~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~--~g~~~---~~~~~~~~ 72 (133)
||+|+||. ..||||||+||..|||.|+++ ..| |+|.+++|++|.+++|..+|++ -+..| .+.-+.+.
T Consensus 58 wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfg-----y~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e 132 (586)
T KOG2007|consen 58 WYICGPTVYDSSHMGHARSYVSFDILRRILRDYFG-----YDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYE 132 (586)
T ss_pred EEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcC-----cceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 69999996 699999999999999999999 999 9999999999999999999962 23334 33333577
Q ss_pred HHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 73 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 73 ~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
++|.++|.+|++-. ....|.-.+|.+.+..++++++++|++|..+++||||+..
T Consensus 133 ~eF~~DM~~LnvLp---Ptv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k 186 (586)
T KOG2007|consen 133 EEFLQDMAALNVLP---PTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK 186 (586)
T ss_pred HHHHHHHHHhCCCC---CcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc
Confidence 99999999999965 2344555678999999999999999999999999999853
No 59
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.76 E-value=2.4e-18 Score=136.58 Aligned_cols=106 Identities=11% Similarity=0.146 Sum_probs=91.2
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC------------------CHHHHHHHHHcCCChH
Q psy6621 4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF------------------GLPAENAAHQHGIDPR 65 (133)
Q Consensus 4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~------------------G~~i~~~a~~~g~~~~ 65 (133)
.+|||.+||||++..+.+|+++|++|++| ++|.+++|+|+| |.|+...+...|+.+
T Consensus 27 i~psG~~HIG~~~e~i~~D~i~R~lr~~G-----~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~- 100 (353)
T cd00674 27 ISPSGHIHIGNFREVITADLVARALRDLG-----FEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCE- 100 (353)
T ss_pred CCCCCCcccCccHHHHHHHHHHHHHHHcC-----CCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCH-
Confidence 36999999999999999999999999999 999999999999 677777777778777
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
++++.+.+.+++.|+.|||++|+ ...|.....-...+.++..|.+++.|.
T Consensus 101 ~~~d~~~~~f~~~l~~lgi~~d~--~~~T~~y~~g~~~~~i~~~L~~~~~I~ 150 (353)
T cd00674 101 SYAEHFERPFEESLEKLGIEVEF--ISQSQMYKSGLYDENILIALEKRDEIM 150 (353)
T ss_pred HHHHHHHHHHHHHHHHcCCeeee--eecCCchhhchHHHHHHHHHHHCChHH
Confidence 99999999999999999999873 234444444568888888899998875
No 60
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.75 E-value=5.7e-18 Score=118.64 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 80 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 80 (133)
.|+|||++||||+++++++|+++|++|++| ++|.++.|+||+|.++...|.+.+.+++++++.+.+.++++++
T Consensus 5 ~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G-----~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLG-----YKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CCCCCCCccHhHHHHHHHHHHHHHHHHHcC-----CCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999 9999999999999999999999999999999999999999877
No 61
>KOG1247|consensus
Probab=99.73 E-value=3.4e-18 Score=136.36 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=113.2
Q ss_pred CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
.||+|..+|+|++.+ ...+||.|||.+.+| ++-.+++|+|+.|.++|.+|.++|.+|+++++++.......+.+
T Consensus 22 lpyvnnvphlgNIIg~vlsAdV~Aryc~~r~-----~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~W 96 (567)
T KOG1247|consen 22 LPYVNNVPHLGNIIGSVLSADVFARYCPLRG-----PNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDW 96 (567)
T ss_pred cceecccccccceeeEEeehhhhcccccCCC-----CceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHh
Confidence 378899999999998 566899999999999 99999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKF 131 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (133)
++|++| .+-+|+.+...+.+|.+|.+|+++|+.-+....+.||..++-
T Consensus 97 f~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~ 144 (567)
T KOG1247|consen 97 FKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDT 144 (567)
T ss_pred hccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcc
Confidence 999887 445688888899999999999999999999999999987753
No 62
>KOG0437|consensus
Probab=99.66 E-value=2.8e-16 Score=132.30 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=106.9
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-------CCC-------------
Q psy6621 4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-------GID------------- 63 (133)
Q Consensus 4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-------g~~------------- 63 (133)
||.||.||+||+.+..-.|+-+-|.|++| ++|+|++|+.|.|+||-.-|.+. |.+
T Consensus 53 PYMNG~LHlGH~FslSK~eFa~~y~rL~G-----k~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~e 127 (1080)
T KOG0437|consen 53 PYMNGRLHLGHAFSLSKVEFASGYERLQG-----KNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEE 127 (1080)
T ss_pred cccCceeeccceeehhhhHHHHHHHHhcC-----ceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhh
Confidence 57899999999999999999999999999 99999999999999996544321 211
Q ss_pred -------------------------------------------------hHHHHHHHHHHHHHHHHhcCcccccCCceec
Q psy6621 64 -------------------------------------------------PREWTVGNIATMKSQLQGFGCKFNWESELAT 94 (133)
Q Consensus 64 -------------------------------------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T 94 (133)
|..|...+-....++|+++|...||.+.+.|
T Consensus 128 ev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFIT 207 (1080)
T KOG0437|consen 128 EVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFIT 207 (1080)
T ss_pred cccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeee
Confidence 2566777778899999999999999988888
Q ss_pred CC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 95 CD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 95 ~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+| |.|-.+|.|.|.+|.+.|.|..+++-..|||.+.
T Consensus 208 TDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDg 245 (1080)
T KOG0437|consen 208 TDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDG 245 (1080)
T ss_pred cccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCC
Confidence 75 8888999999999999999999999999999874
No 63
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=9.6e-15 Score=122.31 Aligned_cols=116 Identities=13% Similarity=0.036 Sum_probs=93.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHH---HHcCC-----------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAA---HQHGI----------------- 62 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a---~~~g~----------------- 62 (133)
-|||+|++|+||+|+.+++|+++|.++..| ++|....-++|.|.++-..+ ++.|.
T Consensus 121 SpNp~kplHvGH~R~aiiGd~l~ril~~~G-----~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~ 195 (562)
T PRK12451 121 SPNIAKPFSMGHLRSTMIGNALKHIAEKCG-----YEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYV 195 (562)
T ss_pred CCCCCCCcccchhhhHHHHHHHHHHHHHCC-----CCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHHHHHH
Confidence 389999999999999999999999999999 99999999999998774332 11110
Q ss_pred --------------------------C------hHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHH
Q psy6621 63 --------------------------D------PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDL 110 (133)
Q Consensus 63 --------------------------~------~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L 110 (133)
+ .+.+++...+.+++++++|||.+||.. .+..|.+.+.+++.+|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~----~es~~~~~~~~v~~~L 271 (562)
T PRK12451 196 QFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ----GEAFYNDLMEDFIGIL 271 (562)
T ss_pred HHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec----chHhhhhhHHHHHHHH
Confidence 0 123466778899999999999999532 3334666789999999
Q ss_pred HHCCCeEEeceeeeecC
Q psy6621 111 YHAGLVYRKEVDYSQNL 127 (133)
Q Consensus 111 ~~~G~iy~~~~~v~~~~ 127 (133)
.++|++|++++.++.+.
T Consensus 272 ~~~g~~~e~dGa~~~~~ 288 (562)
T PRK12451 272 EEHDLLEESEGALVVNL 288 (562)
T ss_pred HHCCCEEecCCeEEEEe
Confidence 99999999998887654
No 64
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.58 E-value=7.2e-15 Score=116.96 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=87.4
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH-------H-c--------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH-------Q-H-------------- 60 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~-------~-~-------------- 60 (133)
-|||+|++||||+|+.+++|+|+|.++..| ++|....-++|.|.++-..+. + .
T Consensus 28 SpNp~kplHvGHlR~~iiGd~laril~~~G-----~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~ 102 (354)
T PF00750_consen 28 SPNPTKPLHVGHLRNTIIGDSLARILEAAG-----YDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLEDLYV 102 (354)
T ss_dssp --BTTSS-BHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHHHHHH
T ss_pred CCCCCCCCcCCcchhhhhhHHHHHHHHHcC-----CeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchhhhhh
Confidence 389999999999999999999999999999 999999999999988743321 0 0
Q ss_pred ---------CC------C------------------hHHH-HHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHH
Q psy6621 61 ---------GI------D------------------PREW-TVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQA 105 (133)
Q Consensus 61 ---------g~------~------------------~~~~-~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~ 105 (133)
.. . ..++ .....+.++++++++++.+| |..+ .+..+.+.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~~~~v~~ 179 (354)
T PF00750_consen 103 GANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFYSGKVDE 179 (354)
T ss_dssp HHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHHTTHHHH
T ss_pred hhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhhhhHHHH
Confidence 00 0 0122 33377889999999999998 3222 23345567899
Q ss_pred HHHHHHHCCCeEEeceeeeecCC
Q psy6621 106 LFLDLYHAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 106 ~f~~L~~~G~iy~~~~~v~~~~~ 128 (133)
++.+|.++|++|+.++.++.+..
T Consensus 180 vl~~L~e~g~~~~~dGa~~i~~~ 202 (354)
T PF00750_consen 180 VLERLKEKGLLYESDGALWIDLT 202 (354)
T ss_dssp HHHHHHCTTTEEEETTEEEEEGC
T ss_pred HHHHHHhCCcEEecCCcEEEech
Confidence 99999999999999999888754
No 65
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.55 E-value=4.4e-14 Score=118.43 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=89.4
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---HcC--------C---------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---QHG--------I--------- 62 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~~g--------~--------- 62 (133)
.|||+|++||||+|+.+++|+++|+++..| ++|....-+.|.|.++-..+. +.+ .
T Consensus 120 spn~~~~~hiGh~r~~~~gd~l~r~~~~~g-----~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (566)
T TIGR00456 120 SANPAGPLHIGHLRNAIIGDSLARILEFLG-----YDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGF 194 (566)
T ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHCC-----CCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHH
Confidence 478999999999999999999999999999 999999999998877643321 100 0
Q ss_pred ----------------------------Ch------HHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHH
Q psy6621 63 ----------------------------DP------REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALF 107 (133)
Q Consensus 63 ----------------------------~~------~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f 107 (133)
++ +..++...+.+++++++|||.+| |..+-.. .+...+..++
T Consensus 195 Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~---~~~~~~~~v~ 271 (566)
T TIGR00456 195 YVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGES---VKNGMVPKVL 271 (566)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccc---cccccHHHHH
Confidence 01 34566788999999999999998 4322111 2345688999
Q ss_pred HHHHHCCCeEEeceeeeecC
Q psy6621 108 LDLYHAGLVYRKEVDYSQNL 127 (133)
Q Consensus 108 ~~L~~~G~iy~~~~~v~~~~ 127 (133)
.+|.++|++|++ +.++.+.
T Consensus 272 ~~L~~~g~~~~~-Ga~~~~~ 290 (566)
T TIGR00456 272 EDLKEKGLVVED-GALWLDL 290 (566)
T ss_pred HHHHHCCCEEEc-CCEEEEc
Confidence 999999999988 7777654
No 66
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4e-14 Score=118.57 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---H-----c--------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---Q-----H-------------- 60 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~-----~-------------- 60 (133)
-|||||++||||+|+.+++|+++|.++..| |+|....-++|.|.++-..+. + .
T Consensus 125 SaNptkplHiGHlR~aiiGDsLaril~~~G-----y~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y 199 (577)
T COG0018 125 SANPTGPLHIGHLRNAIIGDSLARILEFLG-----YDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYY 199 (577)
T ss_pred CCCCCCCcccchhhhhHHHHHHHHHHHHcC-----CCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHH
Confidence 389999999999999999999999999999 999999999999987743321 0 0
Q ss_pred -----------CC--C-------------h-----HHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHHH
Q psy6621 61 -----------GI--D-------------P-----REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALFL 108 (133)
Q Consensus 61 -----------g~--~-------------~-----~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f~ 108 (133)
+. . + +++++.....+++++.+|||.+| |. ...+.-+...+..++.
T Consensus 200 ~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~---~E~e~~~~~~~~~vv~ 276 (577)
T COG0018 200 VKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYD---SEGESFYNGKVEKVVE 276 (577)
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceee---ccchhhhcccHHHHHH
Confidence 11 0 0 12677788999999999999998 31 1122223447899999
Q ss_pred HHHHCCCeEEeceeeeec
Q psy6621 109 DLYHAGLVYRKEVDYSQN 126 (133)
Q Consensus 109 ~L~~~G~iy~~~~~v~~~ 126 (133)
.|.++|++|+.++....|
T Consensus 277 ~L~~~~~~~e~~GA~~vd 294 (577)
T COG0018 277 DLEEKGLLYEDDGALVVD 294 (577)
T ss_pred HHHhcCCEeeeCCeEEEe
Confidence 999999999977776444
No 67
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=7.3e-15 Score=121.78 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCC--------HHH-HHHHHHcCCC----------h
Q psy6621 4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFG--------LPA-ENAAHQHGID----------P 64 (133)
Q Consensus 4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G--------~~i-~~~a~~~g~~----------~ 64 (133)
.+|||.+||||++..+.+|+++|++|..| ++|.+++|+|+|| +|. +..++..|.+ +
T Consensus 31 ~~psG~~HiG~~~e~~~~d~v~r~lr~~G-----~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~ 105 (510)
T PRK00750 31 IGPSGLPHIGNFREVARTDMVRRALRDLG-----IKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCH 105 (510)
T ss_pred CCCCCCcccccccchhhHHHHHHHHHHcC-----CcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCc
Confidence 37999999999999999999999999999 9999999999998 444 3345555554 7
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccCCceecCC-hhHHHHHHHHHHHHHHCCCeE
Q psy6621 65 REWTVGNIATMKSQLQGFGCKFNWESELATCD-PKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~-~~~~~~v~~~f~~L~~~G~iy 117 (133)
..+++.+.+.+++.++.+||++|+ +++++ .......+.+...|.+++.|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~gi~~d~---~~~t~~y~~g~~~~~i~~~l~~~~~i~ 156 (510)
T PRK00750 106 ESYAEHFNAPLREFLDRFGIEYEF---ISATECYKSGRYDEAILTALENRDEIM 156 (510)
T ss_pred hHHHHHHHHHHHHHHHHcCCceEE---EehhhhhccCchHHHHHHHHHhHHHHH
Confidence 999999999999999999998873 23332 222234444445555555443
No 68
>PLN02286 arginine-tRNA ligase
Probab=99.49 E-value=1.4e-13 Score=115.61 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=91.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---H-cC-------C---------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---Q-HG-------I--------- 62 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~-~g-------~--------- 62 (133)
-|||+|++|+||+|+.+++|+|+|.++..| ++|....-++|.|.++-..+. + .+ .
T Consensus 125 SpNp~kplHvGHlRsaiiGdsLaril~~~G-----~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l~~~Y 199 (576)
T PLN02286 125 SPNIAKEMHVGHLRSTIIGDTLARMLEFSG-----VEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDLQEFY 199 (576)
T ss_pred CCCCCCCCccccccchhhHHHHHHHHHHcC-----CceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHHHHHH
Confidence 389999999999999999999999999999 999999999999987743321 1 00 0
Q ss_pred ---------Ch------------------------HHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHH
Q psy6621 63 ---------DP------------------------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD 109 (133)
Q Consensus 63 ---------~~------------------------~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~ 109 (133)
++ +++++.....+.+++.+|||.+|. ..+..|.+.+.+++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~-----~ges~y~~~~~~vi~~ 274 (576)
T PLN02286 200 KAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEE-----KGESFYNPYIPGVIEE 274 (576)
T ss_pred HHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeee-----cCchhhhhhHHHHHHH
Confidence 00 244566678899999999999983 1333466667999999
Q ss_pred HHHCCCeEEeceeeeecC
Q psy6621 110 LYHAGLVYRKEVDYSQNL 127 (133)
Q Consensus 110 L~~~G~iy~~~~~v~~~~ 127 (133)
|.++|++|+.++.++.+.
T Consensus 275 L~~~g~~~e~dGa~~v~l 292 (576)
T PLN02286 275 LESKGLVVESDGARVIFV 292 (576)
T ss_pred HHHCCCEEeeCCceEeec
Confidence 999999999988877554
No 69
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.49 E-value=8.4e-14 Score=105.43 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=73.6
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|+|||.+||||++++++.++++| + +.+.++..+||.+.+.. ....+..+.|.++|++
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~-----~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~w 64 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----M-----YGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEW 64 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHH
Confidence 7899999999999999999999999 5 66678888888765442 1344556669999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+ +|+..+ ...++.+..+++.++|.++|.+|.
T Consensus 65 LGl--~~d~~~--~qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 65 LGV--KWDEVV--IASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred cCC--CCCCcc--chhccHHHHHHHHHHHHHcCCccc
Confidence 999 454433 334578889999999999999995
No 70
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.37 E-value=1.5e-12 Score=108.73 Aligned_cols=92 Identities=10% Similarity=0.077 Sum_probs=72.5
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|+|||+||||||+++++.+.+|| ...| .++.-+||.+.++ .+...++.+.|+++|++
T Consensus 106 FaPsPtG~LHIGharaalln~~~Ar--~~~G--------~~iLRidDTDpk~-----------~R~~~e~~~~I~edL~w 164 (567)
T PRK04156 106 FAPNPSGPLHLGHARAAILNDEYAK--MYGG--------KFILRFEDTDPRT-----------KRPDPEAYDMILEDLKW 164 (567)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEeEccCCCCc-----------ccchHHHHHHHHHHHHH
Confidence 7899999999999999999999999 4444 5666666664433 22345667999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+. |+..+ ....+.+...+...+|+++|++|.
T Consensus 165 LGl~--wD~~~--~qSdr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVK--WDEVV--IQSDRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCC--CCCcc--CcccCHHHHHHHHHHHHHcCCCcc
Confidence 9994 44443 344578999999999999999996
No 71
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.33 E-value=4.5e-12 Score=95.86 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=73.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||+||++++++.-.+|| ...| .-++ +-+++++.....++.+.|.++|++
T Consensus 6 FAPsPtG~lHlG~~~~al~~~l~Ar--~~~G-----~~iL----------------RieDtD~~R~~~~~~~~I~~dL~w 62 (238)
T cd00807 6 FPPEPNGYLHIGHAKAILLNFGYAK--KYGG-----RCNL----------------RFDDTNPEKEEEEYVDSIKEDVKW 62 (238)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEE----------------EecCCCCcccchHHHHHHHHHHHH
Confidence 7899999999999999999999998 6677 3332 224566777778999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| .. ....++.+..++...+|.++|.+|.
T Consensus 63 lGl~wD--~~--~~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 63 LGIKPY--KV--TYASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred cCCCCC--Cc--eecccCHHHHHHHHHHHHHcCCeec
Confidence 999555 33 3344567899999999999999997
No 72
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.33 E-value=3e-12 Score=106.88 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=72.5
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++.+.+|| ...| .++.-+||. +|.+-..++.+.|.++|++
T Consensus 98 FaPsPtG~LHiGharaalln~~~Ar--~~~G--------~~iLRidDT-------------Dp~R~~~e~~~~I~edL~w 154 (560)
T TIGR00463 98 FAPNPSGPLHIGHARAAILNQYFAK--KYKG--------KLIIRFDDT-------------DPRRVKPEAYDMILEDLDW 154 (560)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--hcCC--------EEEEEeCcC-------------CcccccHHHHHHHHHHHHH
Confidence 7999999999999999999999998 5556 344445554 4444556789999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+..| .. +....|.+...++..+|+++|.+|.-
T Consensus 155 LGi~~d--~~--~~qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 155 LGVKGD--EV--VYQSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred cCCCCC--cc--ccccccHHHHHHHHHHHHHcCCceee
Confidence 999754 43 33445889999999999999999963
No 73
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.31 E-value=4e-12 Score=105.27 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| ...| .-++. -.+++|.+...++.+.|.++|++
T Consensus 16 FAPsPtG~LHiGharaAlln~l~Ar--~~gG-----~~iLR----------------iEDTDp~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 16 FPPEPSGYLHIGHAKAALLNDYYAR--RYKG-----RLILR----------------FDDTNPSKEKAEFEESIIEDLGK 72 (523)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ECCCCCCccchHHHHHHHHHHHH
Confidence 7999999999999999999999998 6677 33322 23567777788999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+..| ..+ ....+.+...+...+|+++|.+|.-
T Consensus 73 LGl~wD--~~~--~qSdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 73 IEIKPD--SVS--FTSDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred hCCCCC--CCc--cccccHHHHHHHHHHHHHcCCeEec
Confidence 999654 433 3345788999999999999999964
No 74
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.3e-12 Score=104.17 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||||++++.-.+|| ...| .-++. -++++|..-..++.+.|.++|++
T Consensus 14 FAPsPtG~LHiG~artAl~N~~~Ar--~~~G-----~fiLR----------------iEDTD~~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYAR--KYGG-----KFILR----------------IEDTDPERETPEAEDAILEDLEW 70 (472)
T ss_pred ECcCCCCccchHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ecCCCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999999 7778 44422 24567777778999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+ +|+.. ...+.++.+...+...+|+++|.+|.-
T Consensus 71 LGl--~wde~-~~~QS~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 71 LGL--DWDEG-PYYQSERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred cCC--CCCCc-eeehhhhHHHHHHHHHHHHHCCCeEEe
Confidence 998 55453 233345788999999999999999963
No 75
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.31 E-value=4.1e-12 Score=97.98 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=71.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||++++++.-.+|| +..| .-++.+ +++++.....++.+.|.++|++
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG-----~~iLRi----------------EDtD~~R~~~~~~~~I~~dL~w 61 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGG-----RWLVRI----------------EDLDPPREVPGAADDILRTLEA 61 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEEe----------------CcCCCCCCChHHHHHHHHHHHH
Confidence 7899999999999999999999999 6677 433222 2445555667889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| .. .....++.+...+...+|.++|.+|.
T Consensus 62 LGl~wD--e~-~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 62 YGLHWD--GE-VVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred cCCCCC--CC-eeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 999554 32 12233467889999999999999994
No 76
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.30 E-value=2.6e-12 Score=106.64 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=70.1
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC------------------CHHHHHHHHHcCCChHH
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF------------------GLPAENAAHQHGIDPRE 66 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~------------------G~~i~~~a~~~g~~~~~ 66 (133)
+|||.+||||++..+.+|+++|++|++| .+|.+++++|++ |.|+.......|.. ..
T Consensus 27 ~psG~~HiG~~~e~~~~d~v~r~~r~~g-----~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~-~s 100 (515)
T TIGR00467 27 TPSGHIHIGNFREVITADAIARALRDSG-----SEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK-TS 100 (515)
T ss_pred CCCCCccccchhhhhHHHHHHHHHHHcC-----CCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc-HH
Confidence 5999999999999999999999999999 999999999999 66666555566765 89
Q ss_pred HHHHHHHHHHHHHHhcCccccc
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNW 88 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~ 88 (133)
+++.+...+.+.|+.|||.+.+
T Consensus 101 ~~~h~~~~~~~~l~~~gi~~e~ 122 (515)
T TIGR00467 101 YAEHFLIPFLESLPVLGINPEF 122 (515)
T ss_pred HHHHHHHHHHHHHHHcCCeEEE
Confidence 9999999999999999997753
No 77
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.29 E-value=6.8e-12 Score=105.09 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=73.5
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| ...| .-++ +-.+++|.+...++.+.|.++|++
T Consensus 57 FAPsPtGyLHIGharaAllN~l~Ar--~~gG-----~~iL----------------RiEDTDp~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 57 FPPEASGFLHIGHAKAALINSMLAD--KYKG-----KLVF----------------RFDDTNPSKEKEHFEQAILDDLAT 113 (601)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEE----------------EEcCCCCcccCHHHHHHHHHHHHH
Confidence 7999999999999999999999999 6677 3332 124567777888999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+ +|+.. .+....|.+...+...+|+++|++|.
T Consensus 114 LGl--~wDe~-~~~QSdr~d~y~e~a~~Li~~G~AY~ 147 (601)
T PTZ00402 114 LGV--SWDVG-PTYSSDYMDLMYEKAEELIKKGLAYC 147 (601)
T ss_pred CCC--CCCCc-eeeccccHHHHHHHHHHHHHcCCEEE
Confidence 999 45442 22334578999999999999999994
No 78
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.27 E-value=6.4e-12 Score=98.73 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=66.8
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||++++++.-.+|| +..| .-++.+ +++++.....++.+.+.++|++
T Consensus 6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G-----~~iLRi----------------eDtD~~R~~~~~~~~i~~~L~w 62 (314)
T PF00749_consen 6 FAPSPTGYLHIGHARTALLNYLFAR--KYGG-----KFILRI----------------EDTDPERCRPEFYDAILEDLRW 62 (314)
T ss_dssp E---SSSS-BHHHHHHHHHHHHHHH--HTTS-----EEEEEE----------------ETSSTTTCHHHHHHHHHHHHHH
T ss_pred eCCCCCCCcccchhHHHHHHHHHHh--ccCc-----eEEEec----------------cccccccchhhHHHHHHhheeE
Confidence 7899999999999999999999999 7777 443222 3455566667889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| ..++. ...+.+..++..++|+++|.+|.
T Consensus 63 lGl~~D-~~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 63 LGLEWD-YGPYY--QSDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HT---S-TCEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred EEEecC-CeEEe--HHHHHHHHHHHHHHHhhcCCCcc
Confidence 999665 23333 34577899999999999999996
No 79
>PLN02907 glutamate-tRNA ligase
Probab=99.26 E-value=1.1e-11 Score=106.45 Aligned_cols=90 Identities=10% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| +..| .-++. -.+++|.+...++.+.|.++|++
T Consensus 218 FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLR----------------~eDTdp~r~~~e~~~~I~~dl~w 274 (722)
T PLN02907 218 FPPEPSGYLHIGHAKAALLNQYFAR--RYKG-----KLIVR----------------FDDTNPSKESDEFVENILKDIET 274 (722)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ecCCCCCcCChHHHHHHHHHHHH
Confidence 7999999999999999999999999 6677 43321 23566777778999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| ..+ ....|.+...+...+|+++|.+|.
T Consensus 275 LG~~~d--~~~--~qS~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 275 LGIKYD--AVT--YTSDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred cCCCCC--Ccc--cccccHHHHHHHHHHHHHcCCeee
Confidence 999654 443 344578899999999999999996
No 80
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.24 E-value=2e-11 Score=101.17 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| +..| .-++. + .+++|.+-..++.+.|.++|++
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~--~~~G-----~~iLR---i-------------eDTd~~r~~~e~~~~I~~dL~w 61 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAK--YYNG-----TCNLR---F-------------DDTNPVKEDPEYVESIKRDVEW 61 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE---E-------------cCCCcccCChHHHHHHHHHHHH
Confidence 7999999999999999999999999 6677 33322 2 3456667777899999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+..| +..+. ...+.+...+...+|+++|.+|.-
T Consensus 62 LG~~~d-~~~~~--qS~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 62 LGFKWE-GKIRY--SSDYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred cCCCCC-CCceE--ccccHHHHHHHHHHHHHcCCEEee
Confidence 999654 22222 344677777888999999999974
No 81
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.24 E-value=1.9e-11 Score=95.32 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||++++++.-.+|| ...| .-++.+ +++++.....++.+.|.++|++
T Consensus 10 FAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G-----~~iLRi----------------EDtD~~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 10 FAPSPSGPLHFGSLVAALGSWLDAR--AHGG-----RWLLRI----------------EDIDPPREVPGAADAILADLEW 66 (299)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEE----------------CcCCCCccchHHHHHHHHHHHH
Confidence 7899999999999999999999998 5667 333222 2455566667889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|- .++. ..++.+..++...+|.++|.+|.
T Consensus 67 lGl~wDe-~~~~--QS~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDG-PVLY--QSQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCC-CceE--eeccHHHHHHHHHHHHHCCCcee
Confidence 9995441 2333 33467889999999999999994
No 82
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.23 E-value=2.4e-11 Score=98.93 Aligned_cols=90 Identities=10% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|++++.-.+|| +..| .-++.+ +++++.....++.+.|.++|++
T Consensus 4 FAPSPTG~LHiG~artAL~n~l~Ar--~~gG-----~fiLRi----------------EDTD~~R~~~e~~~~I~~~L~W 60 (433)
T PRK12410 4 FAPSPTGDMHIGNLRAAIFNYIVAK--QQNE-----DFLIRI----------------EDTDKERNIEGKDKEILEILNL 60 (433)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEEe----------------CcCCCCcCChHHHHHHHHHHHH
Confidence 7899999999999999999999999 7777 444322 3445556667889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+.. +.++.. .++.+...+...+|+++|.+|.
T Consensus 61 lGl~w--De~y~Q--SeR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 61 FGISW--DKLVYQ--SENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred cCCCC--CCCeeh--hccHHHHHHHHHHHHHcCCeee
Confidence 99954 455443 3467888999999999999995
No 83
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.22 E-value=2.5e-11 Score=101.00 Aligned_cols=92 Identities=9% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| +..| .-++. -.+++|.....++.+.|.++|++
T Consensus 34 FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G-----~~iLR----------------ieDTd~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQ--DYGG-----KCNLR----------------FDDTNPEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ECCCCCCcCChHHHHHHHHHHHH
Confidence 7999999999999999999999999 6677 33321 23556777778999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+..| +..+. ...+.+...+...+|+++|.+|.-
T Consensus 91 LGi~~d-~~~~~--qS~r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 91 LGFDWS-GELRY--ASDYFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred cCCCCC-CCcee--eecCHHHHHHHHHHHHHcCCEeeC
Confidence 999654 23333 334667677777899999999973
No 84
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.22 E-value=2.9e-11 Score=100.79 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| +..| .-++. -.+++|.+...++.+.|.++|++
T Consensus 56 FaPsPtG~LHiGharaalln~~~Ar--~~gG-----~~iLR----------------iEDTDp~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 56 FPPEPNGFLHIGHAKSMNLNFGSAR--AHGG-----KCYLR----------------YDDTNPETEEQVYIDAIMEMVKW 112 (574)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ECCCCccccChHHHHHHHHHHHH
Confidence 7999999999999999999999999 6677 33322 23456777778999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+..| ..+ ....|.+...+...+|+++|.+|.-
T Consensus 113 LGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 113 MGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred cCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEEc
Confidence 999655 332 3345677677888899999999963
No 85
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.21 E-value=4e-11 Score=97.94 Aligned_cols=90 Identities=11% Similarity=0.091 Sum_probs=70.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|+++..-.+|| +..| .-+ .=+|| +++....++..+.|+++|++
T Consensus 7 FAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fi---LRIED-------------TD~~Rs~~~~~~~I~e~L~w 63 (445)
T PRK12558 7 FAPSPTGYLHVGNARTALLNWLYAR--KHGG-----KFI---LRIDD-------------TDLERSKQEYADAIAEDLKW 63 (445)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEE---EEecc-------------CCcccchHHHHHHHHHHHHH
Confidence 7899999999999999999999998 6677 333 23333 34455567889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+.+| .. ..+.+..+.+++++.+|.++|++|.
T Consensus 64 LGI~~D--e~--y~QSer~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 64 LGINWD--RT--FRQSDRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred cCCCCC--cc--ccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 999776 22 2233445788999999999999995
No 86
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.19 E-value=5e-11 Score=98.20 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||++++++.-.+|| ...| .-++. + +++++.....++.+.|.++|++
T Consensus 6 fAPsPtG~lHiG~~rtal~n~l~Ar--~~~G-----~~iLR---i-------------eDtD~~R~~~~~~~~i~~~L~w 62 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTALFNYLFAK--HTGG-----EFILR---I-------------EDTDLERNIEEAEEAILEGLKW 62 (470)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEE---e-------------CcCCCccCChHHHHHHHHHHHH
Confidence 7899999999999999999999999 6677 33322 2 3455566677889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| +.++.. .++.+..+++..+|+++|.+|.
T Consensus 63 lGl~~d-e~~~~Q--S~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 63 LGISWD-EGPYYQ--SQRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCCC-CCeeeh--hCCHHHHHHHHHHHHHcCCEEe
Confidence 999544 134333 3456788899999999999995
No 87
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.17 E-value=6.5e-11 Score=89.29 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=68.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||+||+||++++++.-.+|| +..| .-++. + +++++.....++.+.|.++|++
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar--~~~G-----~~iLR---i-------------eDtD~~R~~~~~~~~I~~dL~w 62 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFAR--KYGG-----KFILR---I-------------EDTDPERSRPEYVESILEDLKW 62 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----eEEEE---e-------------CcCCCCCCChHHHHHHHHHHHH
Confidence 7899999999999999999999999 6677 33322 2 3455566667889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G 114 (133)
||+..| .. .....++.+..++...+|.++|
T Consensus 63 lGl~wd--~~-~~~QS~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 63 LGLDWD--EG-PYRQSDRFDLYRAYAEELIKKG 92 (230)
T ss_pred cCCCCC--CC-eeehhcCHHHHHHHHHHHHHcC
Confidence 999554 42 1223446788899999999999
No 88
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.14 E-value=5.9e-11 Score=102.23 Aligned_cols=92 Identities=12% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...+|| +..| .-++. -.+++|.....++.+.|.++|++
T Consensus 36 FaPsPtG~lHiGhar~alln~~~A~--~~~G-----~~~LR----------------~eDTd~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 36 FPPEPNGYLHIGHAKSILLNFGIAR--DYGG-----RCHLR----------------MDDTNPETEDTEYVEAIKDDVRW 92 (771)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------eCCCCCCcCChHHHHHHHHHHHH
Confidence 7999999999999999999999998 6677 33321 23556777778999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+..| .. .+....|.+...+...+|+++|.+|.-
T Consensus 93 LG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 93 LGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred cCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCcccC
Confidence 999554 22 233345788999999999999999963
No 89
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.12 E-value=1.6e-10 Score=95.69 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=71.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|++++.-.+|| +..| .-++.+ +++++.....++.+.+.++|++
T Consensus 9 FAPSPTG~lHiG~artAL~n~l~Ar--~~gG-----~fiLRI----------------EDTD~~R~~~~~~~~i~~~L~W 65 (513)
T PRK14895 9 FAPSPTGFLHIGSARTALFNYLFAR--HHNG-----KFLLRI----------------EDTDKERSTKEAVEAIFSGLKW 65 (513)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEEE----------------CCCCccccChHHHHHHHHHHHH
Confidence 7899999999999999999999999 6677 444322 2345566677889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| +.++.-+ ++.+...+..++|.++|.+|.
T Consensus 66 LGl~wD-e~py~QS--eR~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 66 LGLDWN-GEVIFQS--KRNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred cCCCCC-CCceeEe--CcHHHHHHHHHHHHHcCCeEE
Confidence 999544 1344333 356788999999999999995
No 90
>PLN02859 glutamine-tRNA ligase
Probab=99.12 E-value=1.4e-10 Score=99.58 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=69.4
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++.-.+|| ...| .-++. -.+++|.+...++.+.|.++|++
T Consensus 269 FaPsPtG~LHiGharaallN~~~Ar--~~~G-----~~~LR----------------ieDTdp~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 269 FPPEPNGYLHIGHAKAMFVDFGLAK--ERGG-----CCYLR----------------FDDTNPEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCC-----EEEEE----------------ecCCCCCccchHHHHHHHHHHHH
Confidence 7999999999999999999999999 5677 33321 23566777788999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
||+. |... +.+..|.+..-+...+|+++|.+|.-
T Consensus 326 LG~~--~d~~--~~qSd~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 326 MGWE--PFKI--TYTSDYFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred cCCC--CCCc--ccccHhHHHHHHHHHHHHHcCCeEec
Confidence 9974 4443 33334554444566789999999963
No 91
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.09 E-value=2e-10 Score=94.76 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=72.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|++++.-.+|| +..| .-++. =+++++.....++.+.+.++|++
T Consensus 9 fAPSPtG~lHiG~~rtal~n~l~Ar--~~~G-----~fiLR----------------ieDtD~~R~~~~~~~~i~~~L~w 65 (476)
T PRK01406 9 FAPSPTGYLHIGGARTALFNWLFAR--HHGG-----KFILR----------------IEDTDQERSTEEAEEAILEGLKW 65 (476)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEEE----------------eCcCCCCCCChHHHHHHHHHHHH
Confidence 7899999999999999999999999 6677 43322 13455667778889999999999
Q ss_pred cCcccccCC------ceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWES------ELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~------~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|-.. ++. ..++.+...+...+|.++|.+|.
T Consensus 66 lGl~~De~p~~~~~gpy~--QS~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 66 LGLDWDEGPDGGPYGPYR--QSERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCCccCCCCcee--hhcCHHHHHHHHHHHHHcCCeee
Confidence 999655110 233 33466889999999999999996
No 92
>PLN02627 glutamyl-tRNA synthetase
Probab=99.06 E-value=2.7e-10 Score=94.65 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=71.6
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|++++.-.+|| +..| .-++.+ +++++.....++.+.|.++|++
T Consensus 50 FAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG-----~fiLRI----------------EDTD~~R~~~e~~~~I~~~L~W 106 (535)
T PLN02627 50 FAPSPTGNLHVGGARTALFNYLFAR--SKGG-----KFVLRI----------------EDTDLARSTKESEEAVLRDLKW 106 (535)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HhCC-----EEEEEe----------------CcCCCCCCChHHHHHHHHHHHH
Confidence 7899999999999999999999999 7777 443222 3455566777889999999999
Q ss_pred cCcccccCC-------ceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWES-------ELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~-------~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|-.. +|. +.++.+...+...+|+++|.+|.
T Consensus 107 LGl~wDegp~~gg~~gpy~--QSeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 107 LGLDWDEGPDVGGEYGPYR--QSERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred cCCCCCcCcccCCCCCCee--eeccHHHHHHHHHHHHHcCCeee
Confidence 999555211 222 33466888999999999999995
No 93
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.04 E-value=9.4e-10 Score=83.48 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=64.9
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||++++++.-.++| +..| .-+ .=+|| +++..-..++.+.+.++|++
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar--~~~G-----~~i---lRieD-------------td~~r~~~~~~~~i~~dL~w 62 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFAR--KHGG-----KFI---LRIED-------------TDQERSVPEAEEAILEALKW 62 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HcCC-----eEE---EEECc-------------CCCCCCchHHHHHHHHHHHH
Confidence 7899999999999999999999998 5556 322 22333 34445556789999999999
Q ss_pred cCcccccCC---------ceecCChhHHHHHHHHHHHHHHCC
Q psy6621 82 FGCKFNWES---------ELATCDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 82 lgi~~d~~~---------~~~T~~~~~~~~v~~~f~~L~~~G 114 (133)
||+..| . ++..+ .+.+...+..++|.++|
T Consensus 63 lGl~~d--~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 63 LGLDWD--EGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred cCCCCC--cCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 999554 4 33333 36788888899999988
No 94
>KOG1147|consensus
Probab=98.99 E-value=6.5e-10 Score=91.69 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=78.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|||-|+|.||||||..+++.--++- +.+| ..++-+| +++|.+-.+++.+.+++++..
T Consensus 205 FPPEpSGyLHIGHAKAALLNqYfa~--~~~G--------~LIvRFD-------------DTNPaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 205 FPPEPSGYLHIGHAKAALLNQYFAQ--AYQG--------KLIVRFD-------------DTNPAKENEEFEDVILEDLSL 261 (712)
T ss_pred cCCCCCceeehhhHHHHHHHHHHHH--hcCc--------eEEEEec-------------CCCcchhhHHHHHHHHHHHHH
Confidence 8999999999999999988766554 4555 2223333 468888889999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceee
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDY 123 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 123 (133)
|||..| ..|...+|.+.+.....+|++.|-+|.++.+.
T Consensus 262 LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 262 LGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred hCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 999887 45777789999999999999999999987653
No 95
>KOG1148|consensus
Probab=98.34 E-value=1.1e-06 Score=73.63 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|||-|||.||||||-..-+.==+|+ .+.| ..-+ +-.+++|++-.+++...|.+...+
T Consensus 253 FPPEPNG~LHIGHaKAInvNFgyAk--~~~G-----~cyL----------------RfDDTNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 253 FPPEPNGILHIGHAKAINVNFGYAK--AHGG-----VCYL----------------RFDDTNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred CCCCCCceeeecchhheeechhhhh--hhCC-----eEEE----------------ecCCCCcchhhHHHHHHHHHHHHH
Confidence 8999999999999987433322333 2233 2111 112468888889999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||... ...|.+.+|.+..-++-.+|+++|++|.
T Consensus 310 LG~~P----~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFEP----YKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCCc----eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 98743 3578888888888888899999999995
No 96
>KOG1149|consensus
Probab=98.20 E-value=4.2e-06 Score=68.04 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||+|-+|++...=++|| +..| .-++.+ ++++....+.....++.++|.+
T Consensus 38 FAPSPTGfLHlGgLRTALfNYLfAr--k~gG-----kFiLRi----------------EDTDq~R~v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 38 FAPSPTGFLHLGGLRTALFNYLFAR--KKGG-----KFILRI----------------EDTDQKRLIRGSEEAIYEDLKW 94 (524)
T ss_pred ecCCCCcceehhhHHHHHHHHHHHH--hcCC-----eEEEEe----------------ccccccccccchHHHHHHHHHh
Confidence 7899999999999999999988888 6777 544333 2344456666677889999999
Q ss_pred cCcccccCC----c-eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWES----E-LATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~----~-~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+|+..|-.. + -+-...+..+..+...++|++.|.+|+
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr 136 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR 136 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE
Confidence 999776211 0 112233455677788899999999997
No 97
>KOG4426|consensus
Probab=98.17 E-value=1.1e-05 Score=65.96 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=82.0
Q ss_pred CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHH----HHHHc-----------------------
Q psy6621 8 ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAEN----AAHQH----------------------- 60 (133)
Q Consensus 8 g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~----~a~~~----------------------- 60 (133)
-..|+||+|+.+++|.++|.+...| ++|+.+.-+-|.|...-+ .-.+.
T Consensus 201 KeMHVGHLRSTIIGdsl~RllE~~~-----~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkr 275 (656)
T KOG4426|consen 201 KEMHVGHLRSTIIGDSLCRLLEFSG-----VDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKR 275 (656)
T ss_pred HHhhhhhhhhhhHhHHHHHHHHhcC-----cceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhc
Confidence 4799999999999999999999999 999988888777755321 11110
Q ss_pred -------------------CCCh------HHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCC
Q psy6621 61 -------------------GIDP------REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 61 -------------------g~~~------~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~ 115 (133)
|-+| ..+|+-..+++.+..++|.|+.- -.-+..|...+.++++.|..+|+
T Consensus 276 FD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~-----e~GESFYq~~m~~vveel~~kgl 350 (656)
T KOG4426|consen 276 FDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLK-----ERGESFYQDRMAEVVEELKSKGL 350 (656)
T ss_pred cCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHh-----hcchhhhhhHHHHHHHHHhcCCc
Confidence 1111 34577778899999999999873 12334577889999999999999
Q ss_pred eEEece-eeeecC
Q psy6621 116 VYRKEV-DYSQNL 127 (133)
Q Consensus 116 iy~~~~-~v~~~~ 127 (133)
+..+++ .+.|-+
T Consensus 351 vee~~Gr~i~f~~ 363 (656)
T KOG4426|consen 351 VEEDDGRRIMFPE 363 (656)
T ss_pred eeecCCceEeccC
Confidence 998764 344443
No 98
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.12 E-value=8.3e-07 Score=70.87 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=53.8
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCH--HHHH-----HHHH-cCCC------h----HH
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGL--PAEN-----AAHQ-HGID------P----RE 66 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~--~i~~-----~a~~-~g~~------~----~~ 66 (133)
+|+|.+|||+++..+.+|+++|-++.+| .+|.+++.+||.+- ++-. ..++ .|.+ | ..
T Consensus 32 sPSG~~HIGn~rEv~~~~~V~~al~~~g-----~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~~S 106 (360)
T PF01921_consen 32 SPSGLPHIGNFREVLRADMVARALRDRG-----KDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCHES 106 (360)
T ss_dssp --SS---HHHHHHHHHHHHHHHHHHTTT------EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSSSC
T ss_pred CCCCCcccccccchhhHHHHHHHHHHcC-----CCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCCcc
Confidence 6999999999999999999999999999 99999999999872 2211 1111 1322 1 57
Q ss_pred HHHHHHHHHHHHHHhcCcccc
Q psy6621 67 WTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d 87 (133)
+++.+.+.+.+.|+.+||...
T Consensus 107 yaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 107 YAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp HHHHHHHHHHHHHHTTT---E
T ss_pred HHHHHHHHHHHHHHHcCCceE
Confidence 899999999999999999775
No 99
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=3.7e-05 Score=63.72 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=64.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCH--------HHHHHHHH-cCCC----------hH
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGL--------PAENAAHQ-HGID----------PR 65 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~--------~i~~~a~~-~g~~----------~~ 65 (133)
+|+|.+|||+++-.+.+|+++|-+|.+| ..|.+++=+||.+- |-....++ .|++ ..
T Consensus 28 sPSG~~HIGn~rEv~t~d~V~ralr~~g-----~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~G~~~ 102 (521)
T COG1384 28 SPSGLIHIGNFREVLTADAVRRALRDRG-----DEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPFGCCD 102 (521)
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHcC-----CceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCccccc
Confidence 6999999999999999999999999999 99999999999972 21122233 3543 26
Q ss_pred HHHHHHHHHHHHHHHhcCcccc
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d 87 (133)
.+++.+...+.+.|..+||...
T Consensus 103 Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 103 SYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred hHHHHHHHHHHHHHHhcCCceE
Confidence 7899999999999999998764
No 100
>KOG1195|consensus
Probab=97.57 E-value=0.00039 Score=57.67 Aligned_cols=117 Identities=12% Similarity=-0.045 Sum_probs=82.3
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHH---H---------------------
Q psy6621 4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAH---Q--------------------- 59 (133)
Q Consensus 4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~---~--------------------- 59 (133)
||.+-+.|+||+|..+++-.++...+..| ++|..+-..-|.|...-..+. +
T Consensus 119 PNIAK~FHvGhLRsTiiG~flanl~e~~G-----~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk 193 (567)
T KOG1195|consen 119 PNIAKPFHVGHLRSTIIGNFLANLHEALG-----WEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVK 193 (567)
T ss_pred CCcccccccchhhhhhhhhHhhhhHHhhC-----CceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHH
Confidence 55567899999999999999999999999 999777666666544321110 0
Q ss_pred ------cCCC----------------------hHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHH
Q psy6621 60 ------HGID----------------------PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLY 111 (133)
Q Consensus 60 ------~g~~----------------------~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~ 111 (133)
...+ ++++.+--+....+...+||+.+|- +.-.+.-+.+.++.+...+.
T Consensus 194 ~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~---y~gESqv~~e~~~~~~d~~r 270 (567)
T KOG1195|consen 194 INKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDE---YSGESQVSNEKMQEALDLLR 270 (567)
T ss_pred hhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeee---ccchHHHHHHHHHHHHHHHH
Confidence 0000 0224455567777888999999982 12223346678889999999
Q ss_pred HCCCeEEeceeeeecCC
Q psy6621 112 HAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 112 ~~G~iy~~~~~v~~~~~ 128 (133)
.+|++-..++...+|..
T Consensus 271 s~~l~~e~dG~~vidL~ 287 (567)
T KOG1195|consen 271 SANLTEEIDGTIVIDLS 287 (567)
T ss_pred hcCCcccCCCcEEEEec
Confidence 99988887777777654
No 101
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=95.99 E-value=0.06 Score=41.83 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=41.6
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||..+++.. +.++++ .| +++.+..+-. |..- ....+++ -.+++...+.+++.++|+
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~-ag-----~~~~~~IaD~-ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQE-AG-----YELFFFIADL-HALT------VKQLDPE-ELRQNTRENAKDYLACGL 70 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHh-CC-----CCEEEEecch-HHHh------CCCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 48999999999986544 334433 37 7776554432 2220 1113444 446677778888999998
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 71 dp~ 73 (280)
T cd00806 71 DPE 73 (280)
T ss_pred Ccc
Confidence 653
No 102
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.15 E-value=0.033 Score=42.94 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=44.3
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC--CHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~--G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
-||| .+||||..+. -.+.++++. | ++|.+..|-.+. |.|.-+..++.+.+++ -..++...+..++.+
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g-----~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~-~i~~~~~~~~~~~~a 77 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-G-----HEVIVLIGDATAMIGDPSGKSEERKLLDLE-LIRENAKYYKKQLKA 77 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-C-----CeEEEEECCCeeecCCCCCccccccCCCHH-HHHHHHHHHHHHHHH
Confidence 4899 8999998853 357777765 8 887655554332 2232112222344554 446677778888888
Q ss_pred cCcc
Q psy6621 82 FGCK 85 (133)
Q Consensus 82 lgi~ 85 (133)
+|..
T Consensus 78 ~g~~ 81 (269)
T cd00805 78 ILDF 81 (269)
T ss_pred HHcc
Confidence 8874
No 103
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.15 E-value=0.16 Score=41.07 Aligned_cols=66 Identities=15% Similarity=0.049 Sum_probs=41.1
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||... ...+.+++. .| ++|.+..+-++. . . ..+.+++++ +++...+..++.++|+
T Consensus 74 ~PSG~lHLGh~~~---~~~~~~lQ~-~g-----~~~~i~IaD~ha-~-----~-~~~~~~e~~-~~~~~~~~~~~lA~G~ 136 (368)
T PRK12285 74 MPSGPMHIGHKMV---FDELKWHQE-FG-----ANVYIPIADDEA-Y-----A-ARGLSWEET-REWAYEYILDLIALGF 136 (368)
T ss_pred CCCCCccHHHHHH---HHHHHHHHh-cC-----CCEEEEecchHH-H-----h-cCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 5899999999753 344555555 78 777655543331 1 1 114565554 4444557778889998
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 137 Dp~ 139 (368)
T PRK12285 137 DPD 139 (368)
T ss_pred Ccc
Confidence 765
No 104
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.94 E-value=0.06 Score=41.68 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=42.2
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCC--CHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAF--GLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~--G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
.||| .+||||..+ -..+.++++ .| +++.+..|-.+. |+|.-...++.-.+ .+-+.++...+.+++.+
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g-----~~~~~~I~d~~a~~~d~sg~~~~r~~~~-~~~i~~n~~~~~~~~~a 76 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AG-----HRPIFLIGGQTGIIGDPSGKKSERTLND-PEEVRQNIRRIAAQYLA 76 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CC-----CCEEEEEecCceeeCCCCCccccccCCC-HHHHHHHHHHHHHHHHH
Confidence 4899 699999887 233445544 68 888766552221 22221111111223 44556668889999999
Q ss_pred cCcc
Q psy6621 82 FGCK 85 (133)
Q Consensus 82 lgi~ 85 (133)
+|+.
T Consensus 77 ~g~d 80 (273)
T cd00395 77 VGIF 80 (273)
T ss_pred hcCc
Confidence 9985
No 105
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.37 E-value=0.26 Score=40.70 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=47.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.+||||..+.+-. ..+.+...| +++.+.. .|-|-+- ...+|.++.+. ...+..++-..|+
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~-----~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~Gl 73 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPG-----VESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAGL 73 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCC-----CcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhCC
Confidence 49999999998776542 334444458 8775443 3333221 12456655443 4557788888998
Q ss_pred ccccCCc-eecCChhHHHH
Q psy6621 85 KFNWESE-LATCDPKYYKW 102 (133)
Q Consensus 85 ~~d~~~~-~~T~~~~~~~~ 102 (133)
..+-... .-+.-|++.+.
T Consensus 74 DPek~~if~QSdvpeh~EL 92 (431)
T PRK12284 74 DPERVTFYRQSDIPEIPEL 92 (431)
T ss_pred CccceEEEECCcchhHHHH
Confidence 7653222 23344665444
No 106
>PLN02486 aminoacyl-tRNA ligase
Probab=94.16 E-value=0.6 Score=37.99 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=39.3
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
.||| .+||||+... ..+..+++..| ..+....+ |+ +....+ +.+.++. .++.....+++.++|
T Consensus 81 ~PSg~~lHlGHlv~~---~~~~~lQ~~~~-----~~~~I~ia-D~-----e~~~~~-~~~~e~i-~~~~~en~~~iiA~G 144 (383)
T PLN02486 81 GPSSEALHLGHLIPF---MFTKYLQDAFK-----VPLVIQLT-DD-----EKFLWK-NLSVEES-QRLARENAKDIIACG 144 (383)
T ss_pred CCCCccccHHHHHHH---HHHHHHHHhCC-----CeEEEEec-CH-----HHHhhc-CCCHHHH-HHHHHHHHHHHHHhC
Confidence 5999 5999996554 33444444556 65555433 43 333333 4565443 455556667777788
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 145 ~dp~ 148 (383)
T PLN02486 145 FDVE 148 (383)
T ss_pred CCCc
Confidence 7664
No 107
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.37 Score=38.24 Aligned_cols=84 Identities=8% Similarity=-0.098 Sum_probs=49.9
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCc-eeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPV-RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~-~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
.|||.+||||..+++.. +++-..+ + ++ |++=.|.|.+- ..+.++.+-.+....+...++-++|
T Consensus 13 ~PSG~lHLGny~ga~~~----~v~~q~~-----~~~~-f~~IaDlha~t------~~~~~~~~~l~~~~~e~~a~~LA~G 76 (314)
T COG0180 13 QPSGKLHLGNYLGAIRN----WVLLQEE-----YYEC-FFFIADLHAIT------VRQDPTEEDLRQATREVAADYLAVG 76 (314)
T ss_pred CCCCCcchhHhHHHHHH----HHHHhcc-----cCce-EEEEecHHHhh------cCCCChHHHHHHHHHHHHHHHHHhc
Confidence 49999999999887543 4444444 4 44 33344544221 1233334566677777888888899
Q ss_pred ccccc-CCceecCChhHHHHHH
Q psy6621 84 CKFNW-ESELATCDPKYYKWTQ 104 (133)
Q Consensus 84 i~~d~-~~~~~T~~~~~~~~v~ 104 (133)
+..+- .-+.-+.-|++.+..+
T Consensus 77 iDP~k~~if~QS~v~e~~eLa~ 98 (314)
T COG0180 77 LDPEKSTIFLQSEVPEHAELAW 98 (314)
T ss_pred cCccccEEEEccCchHHHHHHH
Confidence 87763 2223344566555443
No 108
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=93.78 E-value=0.14 Score=41.94 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=39.3
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
-||| .|||||+... -.+.++ ...| +++.++.|-.+ .|+|.-...++...+.+ -+.++...+.+++.+
T Consensus 41 dPT~~sLHlGhlv~l---~~l~~l-q~~G-----~~~~~ligd~ta~igDpsgk~~~R~~l~~e-~i~~n~~~i~~q~~~ 110 (410)
T PRK13354 41 DPTAPSLHIGHLVPL---MKLKRF-QDAG-----HRPVILIGGFTGKIGDPSGKSKERKLLTDE-QVQHNAKTYTEQIFK 110 (410)
T ss_pred cCCCCCcchhhHHHH---HHHHHH-HHcC-----CeEEEEEcccccccCCCCcccccccCCCHH-HHHHHHHHHHHHHHH
Confidence 4898 5999996553 224444 4578 88876665544 45554222223334433 345666777777666
No 109
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=93.77 E-value=0.37 Score=38.32 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=47.8
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||..+.+.. ++.-..| ++|.+..+-. |..- ...+.++. ...+....+..++.++|+
T Consensus 10 ~PTG~~HlG~~l~~~~~----~~~~q~~-----~~~~i~IaD~-ha~t-----~~~~~~~~-~~~~~~~~~~~~~lA~Gl 73 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQT----KWLQQFG-----VELFICIADL-HAIT-----VKDNTDPD-ALRKAREELAADILAVGL 73 (328)
T ss_pred CCCcHhHHHHHHHHHHH----HHHHhCC-----CCEEEEeecc-hhhc-----CCCCCCHH-HHHHHHHHHHHHHHHhCc
Confidence 59999999998876544 2223568 8876554433 3110 01111333 335555666778888998
Q ss_pred ccccCCc-eecCChhHHHHHHHH
Q psy6621 85 KFNWESE-LATCDPKYYKWTQAL 106 (133)
Q Consensus 85 ~~d~~~~-~~T~~~~~~~~v~~~ 106 (133)
..+-... .-+.-++|.+..+.+
T Consensus 74 Dp~k~~if~qS~~~e~~el~~~l 96 (328)
T TIGR00233 74 DPKKTFIFLQSDYPEHYELAWLL 96 (328)
T ss_pred ChhheEEEEcCCcHHHHHHHHHH
Confidence 7763222 223335665555533
No 110
>PLN02886 aminoacyl-tRNA ligase
Probab=93.05 E-value=0.54 Score=38.35 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=46.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.+||||..+.+- -+..+++ | +++.+ +=.|-|-+- ..-++.++ +++...+..++.++|+
T Consensus 54 qPSG~lHLGnylGai~--~~v~lQ~--~-----~~~~~-~IADlHAlt-------~~~~~~~l-r~~~~~~~a~~lA~Gl 115 (389)
T PLN02886 54 QPTGSIHLGNYLGAIK--NWVALQE--T-----YDTFF-CVVDLHAIT-------LPHDPREL-GKATRSTAAIYLACGI 115 (389)
T ss_pred CCCCccHHHHHHHHHH--HHHHHhc--c-----CCEEE-EEecHHHhh-------CCCCHHHH-HHHHHHHHHHHHHcCc
Confidence 4899999999887652 3444443 7 77643 334444221 12355544 4555667888889999
Q ss_pred ccccCC-ceecCChhHHHH
Q psy6621 85 KFNWES-ELATCDPKYYKW 102 (133)
Q Consensus 85 ~~d~~~-~~~T~~~~~~~~ 102 (133)
..+-.. +.-+..|++.+.
T Consensus 116 DP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 116 DPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred CccceEEEEeCCCchhHHH
Confidence 765222 223344555443
No 111
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=92.99 E-value=0.57 Score=37.28 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=38.2
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.+||||..+.+-. +.+++. + ++|.+..+ |-|.+ -...++++ +.++...+.+++.++|+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~-----~~~~~~Ia-D~ha~-------t~~~~~~~-i~~~~~~~~~~~lA~Gl 70 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--E-----YECFFCIA-DLHAL-------TVPQDPEE-LRENTRELAADYLACGI 70 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--c-----CCeEEEEe-cHHHH-------hCCCCHHH-HHHHHHHHHHHHHeEcc
Confidence 49999999999887533 444433 4 55654443 22211 11124443 34556667778888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 71 Dp~ 73 (333)
T PRK00927 71 DPE 73 (333)
T ss_pred Chh
Confidence 765
No 112
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.66 E-value=0.78 Score=36.58 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.+||||..+.+-. ..+.+...| .++.+.. .|-|-+ . ...+|+++ +++......++-++|+
T Consensus 11 qPTG~~HLGnylga~k~--~~~lq~~~~-----~~~~~~I-ADlHal---t----~~~~~~~l-~~~~~~~~~~~lA~Gl 74 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKP--ALQMAKNYE-----GKALYFI-ADYHAL---N----AVHDPEQF-RSYTREVAATWLSLGL 74 (332)
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHhcC-----CeEEEEE-echhhc---c----CCCCHHHH-HHHHHHHHHHHhheee
Confidence 48999999998775442 223333345 5554433 233322 1 11255554 4555667778888999
Q ss_pred ccccCC-ceecCChhHHHH
Q psy6621 85 KFNWES-ELATCDPKYYKW 102 (133)
Q Consensus 85 ~~d~~~-~~~T~~~~~~~~ 102 (133)
..+-.. +.-+.-|++.+.
T Consensus 75 DP~k~~if~qS~v~~~~eL 93 (332)
T PRK12556 75 DPEDVIFYRQSDVPEIFEL 93 (332)
T ss_pred cccceEEEECCCchHHHHH
Confidence 766222 222333555443
No 113
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=92.29 E-value=0.5 Score=38.68 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=35.8
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC-CC-CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW-DA-FGLPAENAAHQHGIDPREWTVGNIATMKSQLQ 80 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~-D~-~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 80 (133)
-|||+ |||||+.. -..+.++++ .| +++.++.|- +. .|+|.-...+....+ .+.+..+...+++++.
T Consensus 41 dPTg~slHlGhlv~---l~~l~~lQ~-~G-----~~~~~ligd~ta~igDpsgk~~~r~~l~-~e~i~~n~~~i~~ql~ 109 (408)
T PRK05912 41 DPTAPSLHLGHLVP---LLKLRRFQD-AG-----HKPIALIGGFTGMIGDPSGKSETRKLLT-REQVAENAETIKEQLF 109 (408)
T ss_pred cCCCCCccHHhHHH---HHHHHHHHH-CC-----CcEEEEEcCceeEcCCCCCCchhhccCC-HHHHHHHHHHHHHHHH
Confidence 48995 99999874 234555554 68 887665543 11 122221111122233 4455566677777774
No 114
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=92.27 E-value=0.61 Score=37.03 Aligned_cols=66 Identities=11% Similarity=-0.035 Sum_probs=38.5
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||+.. + -.+.++++ .| ++|.+..+=. |..-. ...+++ -.+.+...+..++.++|+
T Consensus 38 ~PTG~lHLG~~~~-~--~~~~~lq~-~g-----~~~~i~IaD~-ha~~~------~~~~~~-~i~~~~~~~~~~~~A~G~ 100 (329)
T PRK08560 38 EPSGKIHLGHLLT-M--NKLADLQK-AG-----FKVTVLLADW-HAYLN------DKGDLE-EIRKVAEYNKKVFEALGL 100 (329)
T ss_pred CCCCcchhhhhHH-H--HHHHHHHH-CC-----CeEEEEEccc-hhhcC------CCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 5899999999653 2 23666665 47 7765444322 21100 013443 445556678888888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 101 dp~ 103 (329)
T PRK08560 101 DPD 103 (329)
T ss_pred Chh
Confidence 654
No 115
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.16 E-value=0.34 Score=39.69 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 6 EEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 6 png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
||| .|||||+.... .+.| +...| ++|....|-=+ .|+|. -+.+....-..+.+.++.+.+++++...
T Consensus 41 PTa~slHlGhlv~l~---kL~~-fQ~aG-----h~~ivLigd~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 41 PTAPSLHLGHLVPLM---KLRR-FQDAG-----HKPIVLIGDATAMIGDPS-GKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CCCCccchhhHHHHH---HHHH-HHHCC-----CeEEEEecccceecCCCC-CCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 899 89999987642 2333 34578 88876665332 46665 2222222223556667777777776643
Q ss_pred Cc---ccccCCceecCChhHHHHHHHH-----HHHHHHCCCe
Q psy6621 83 GC---KFNWESELATCDPKYYKWTQAL-----FLDLYHAGLV 116 (133)
Q Consensus 83 gi---~~d~~~~~~T~~~~~~~~v~~~-----f~~L~~~G~i 116 (133)
-- .+-++++ ...+.+|...+..+ ..++.+++-+
T Consensus 111 ld~k~~~v~ns~-w~~~~~y~~~l~~~g~~~sv~rml~~d~~ 151 (401)
T COG0162 111 LDNKAEFVNNSD-WLKKLNYLDFLRDVGKHFSVNRMLRRDDV 151 (401)
T ss_pred CCcceEEEechH-HhCcCCHHHHHHHHHhHccHHHHHHhhhH
Confidence 11 1111111 23334566666655 3445544433
No 116
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=91.15 E-value=1.1 Score=36.51 Aligned_cols=69 Identities=9% Similarity=-0.096 Sum_probs=38.4
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.+||||. .+..--+.++ ...| ++|.+..+-- |..- ..+.|.+++++ ......+...+..+|+
T Consensus 74 ~PTG~lHLG~g--~i~~~~~~~l-q~~G-----~~v~~~IaD~-hA~~----~~~~g~~l~~i-~~~~~~~~~~~~A~Gl 139 (383)
T PTZ00126 74 EPSGRMHIAQG--ILKAINVNKL-TKAG-----CVFVFWVADW-FALL----NNKMGGDLEKI-RKVGEYFIEVWKAAGM 139 (383)
T ss_pred CCCCcccccch--HhHhHHHHHH-HhCC-----CeEEEEEccc-eeec----CCCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 38999999992 2211223333 3448 8876554422 2110 01234455554 5566667778888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 140 Dp~ 142 (383)
T PTZ00126 140 DMD 142 (383)
T ss_pred Ccc
Confidence 665
No 117
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=90.79 E-value=2.2 Score=34.06 Aligned_cols=66 Identities=15% Similarity=0.029 Sum_probs=38.7
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||..+.+.. .+++...| . |.+. =.|.|..- ....+++++ +++......++.++|+
T Consensus 10 ~PTG~~HLGn~l~~~~~---~~~lQ~~~-----~-~~i~-IaD~ha~~------~~~~~~~~i-~~~~~~~~~~~lA~G~ 72 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKN---RVALQNEH-----E-QFVL-IADQQALT------DNAKNPEKI-RRNILEVALDYLAVGI 72 (333)
T ss_pred CCCCcchHHHHHHHHHH---HHHHHhCC-----C-EEEE-EccchhHh------CCCCCHHHH-HHHHHHHHHHHHHhCc
Confidence 58999999998886554 11223345 4 4333 25555221 123455544 3455567777888898
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 73 dp~ 75 (333)
T PRK12282 73 DPA 75 (333)
T ss_pred Chh
Confidence 765
No 118
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.04 E-value=1.8 Score=35.45 Aligned_cols=79 Identities=14% Similarity=-0.022 Sum_probs=45.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|||.+||||..+.+ . .|.. ..+ +++. ++=.|.|-+- ....++.++ +++...+..++.++|
T Consensus 10 qPSG~~HLGnylG~i-k----~wv~lq~~-----~~~~-~~IADlHAlt------~~~~d~~~i-r~~~~~~~a~~lA~G 71 (398)
T PRK12283 10 RPTGRLHLGHYHGVL-K----NWVKLQHE-----YECF-FFVADWHALT------THYETPEVI-EKNVWDMVIDWLAAG 71 (398)
T ss_pred CCCCcchHHHHHHHH-H----HHHHHhcC-----CcEE-EEeecHHHHh------CCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 499999999988854 2 4444 346 6654 3334444221 112255544 455566888899999
Q ss_pred cccccC-CceecCChhHHH
Q psy6621 84 CKFNWE-SELATCDPKYYK 101 (133)
Q Consensus 84 i~~d~~-~~~~T~~~~~~~ 101 (133)
+..+-. .+.-+..|+|.+
T Consensus 72 lDP~k~~if~QS~v~eh~e 90 (398)
T PRK12283 72 VDPAQATLFIQSKVPEHAE 90 (398)
T ss_pred CCccceEEEECCCchHHHH
Confidence 976522 222334455543
No 119
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=89.54 E-value=1.1 Score=36.28 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC-C-CHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA-F-GLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~-~-G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
-||| .|||||+.+. -.+.++++ .| ++|.++.|--+ . |+|.-....+.-.+ .+-+.++...+..++..
T Consensus 38 dPTg~~lHlGh~v~l---~~l~~lq~-~G-----~~~~iligd~ta~igdpsg~~~~R~~~~-~~~i~~n~~~i~~~la~ 107 (377)
T TIGR00234 38 DPTAPSLHLGHLVPL---LKLRDFQQ-AG-----HEVIVLLGDATALIGDPSGKSEERKLLT-REEVQENAENIKKQIAR 107 (377)
T ss_pred CCCCCCccHHHHHHH---HHHHHHHH-CC-----CcEEEEEeccchhhcCCCChHHHhhcCC-HHHHHHHHHHHHHHHHH
Confidence 4999 8999997752 33555555 68 88766554322 1 33432211121222 33344555555555543
No 120
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=86.84 E-value=0.79 Score=35.47 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=21.4
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG 45 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G 45 (133)
.|||.+||||+.... .+.++++ .| .+|.+..|
T Consensus 13 ~PTg~lHlG~l~~~~---~~~~lq~-~g-----~~~~i~ia 44 (292)
T PF00579_consen 13 DPTGDLHLGHLVPIM---KLIWLQK-AG-----FKVIILIA 44 (292)
T ss_dssp ESSSS-BHHHHHHHH---HHHHHHH-TT-----SEEEEEEE
T ss_pred CCCCcccchHHHHHH---HHHHHHh-cC-----CccceEec
Confidence 499999999887653 3444444 88 88876655
No 121
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=82.12 E-value=7 Score=34.31 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=34.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHH-HHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSGAECR-LAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R-~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|||.+||||. ++. .+.. -+...| ++|.+..+ |-|.. . ..+.+.+.++... ....+.+.+.++|
T Consensus 40 ~PTG~lHLGng---~~~-aik~~~~~q~g-----~~~~~lIA-D~HAl---t-~~~~~~~l~~i~~-~~~~~~~~~lA~G 104 (682)
T PTZ00348 40 EPSGRMHIAQG---IFK-AVNVNKCTQAG-----CEFVFWVA-DWFAL---M-NDKVGGELEKIRI-VGRYLIEVWKAAG 104 (682)
T ss_pred CCCCcCeeccH---HHH-HHHHHHHHhCC-----CeEEEEEc-chhhh---c-CCCCCCCHHHHHH-HHHHHHHHHHHcC
Confidence 38999999993 222 1111 123568 87754432 11111 0 1123334444332 2345666788888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 105 lDpe 108 (682)
T PTZ00348 105 MDMD 108 (682)
T ss_pred CCcc
Confidence 8665
No 122
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=79.33 E-value=2.5 Score=30.47 Aligned_cols=31 Identities=10% Similarity=-0.052 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcC
Q psy6621 24 ECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHG 61 (133)
Q Consensus 24 l~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g 61 (133)
||||+|+.| |++.+.. +.-+..+...+.++|
T Consensus 18 LARwLRllG-----ydt~~~~--~~~d~~i~~i~~~e~ 48 (165)
T COG1656 18 LARWLRLLG-----YDTVYSS--NESDDEIILIAKKEG 48 (165)
T ss_pred HHHHHHHcC-----Cceeeec--cCCcHHHHHHHhcCC
Confidence 799999999 9999987 333345555565544
No 123
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.97 E-value=7.2 Score=26.44 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHC-CCeEEecee
Q psy6621 75 MKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA-GLVYRKEVD 122 (133)
Q Consensus 75 ~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~-G~iy~~~~~ 122 (133)
....++.||.++.|...--|.....-+.+..++..+++. |++|.+.+-
T Consensus 22 hl~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~ 70 (119)
T COG3171 22 HLGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGY 70 (119)
T ss_pred cHHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcc
Confidence 345678899999987776666666677888888887776 999987643
No 124
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=75.36 E-value=4.2 Score=28.45 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=23.4
Q ss_pred HHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcC
Q psy6621 24 ECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHG 61 (133)
Q Consensus 24 l~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g 61 (133)
++||+|+.| +++.+..+.+|. .+...|.++|
T Consensus 12 Lar~LR~lG-----~Dt~~~~~~~D~--~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLG-----YDTLYSRDIDDD--EILELAREEG 42 (147)
T ss_pred HHHHHHHCC-----CcEEEeCCCChH--HHHHHhhhCC
Confidence 799999999 999999877544 4555565543
No 125
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=74.88 E-value=3.7 Score=24.20 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=22.1
Q ss_pred eeecccCC--CCC-HHHHHHHHHcCCChHHHHHHH
Q psy6621 40 VFQPMGWD--AFG-LPAENAAHQHGIDPREWTVGN 71 (133)
Q Consensus 40 V~~~~G~D--~~G-~~i~~~a~~~g~~~~~~~~~~ 71 (133)
|+.-.|+| |+| .+++.++++.|+++.++.++.
T Consensus 18 vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 18 VFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred HHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHH
Confidence 34444444 456 678888899999998876554
No 126
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=74.77 E-value=25 Score=28.16 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhc---CcccccCCceecC---ChhHHHHHHHHHHHHHHCCCeEEeceeeeecC
Q psy6621 67 WTVGNIATMKSQLQGF---GCKFNWESELATC---DPKYYKWTQALFLDLYHAGLVYRKEVDYSQNL 127 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~l---gi~~d~~~~~~T~---~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~ 127 (133)
-.+.+++.+.+.+++. ||.+||+.+.... ...+..+++++=.+|.++|.-+.-.-.+.++|
T Consensus 96 ~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~~~p 162 (358)
T cd02875 96 YRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFDVAWSP 162 (358)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCc
Confidence 3445666666666666 7788998775321 24566677777777777653333333344443
No 127
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=74.13 E-value=21 Score=26.82 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHHHCCCe
Q psy6621 70 GNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLYHAGLV 116 (133)
Q Consensus 70 ~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~i 116 (133)
.+++.+.+.+++. ||.+||+.+... ...+..+++++-..|.+.|++
T Consensus 86 ~fi~~lv~~~~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 86 ALVDKIINYVVSYNLDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred HHHHHHHHHHHHhCCCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 3444444555555 677888776433 356777888887778776764
No 128
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=70.32 E-value=31 Score=23.42 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=50.1
Q ss_pred ceeeecccCCCCCHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHHHhcCcccc---cCCceecCChh
Q psy6621 38 VRVFQPMGWDAFGLPAENAAHQHGID----------------PREWTVGNIATMKSQLQGFGCKFN---WESELATCDPK 98 (133)
Q Consensus 38 ~~V~~~~G~D~~G~~i~~~a~~~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~d---~~~~~~T~~~~ 98 (133)
..+..++-.--....-...|.+.|.+ -..++.+..+..++.|+.+|+..+ +..-.....+.
T Consensus 29 vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~ 108 (124)
T PF02662_consen 29 VRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKR 108 (124)
T ss_pred eEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHH
Confidence 44555666666666666677776543 157899999999999999999865 11111223345
Q ss_pred HHHHHHHHHHHHHHCC
Q psy6621 99 YYKWTQALFLDLYHAG 114 (133)
Q Consensus 99 ~~~~v~~~f~~L~~~G 114 (133)
+.+.+.++.++|.+-|
T Consensus 109 fa~~~~~f~~~i~~lG 124 (124)
T PF02662_consen 109 FAEIVNEFTERIKELG 124 (124)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5566777777776654
No 129
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=69.65 E-value=2.4 Score=27.55 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=11.1
Q ss_pred CCCCCCCcCcchHHHH
Q psy6621 2 YDCTEEELTCLGGVVV 17 (133)
Q Consensus 2 y~~~png~lHlGH~~~ 17 (133)
|+..+ +++|+||...
T Consensus 4 ~~G~F-dp~H~GH~~l 18 (105)
T cd02156 4 FPGEP-GYLHIGHAKL 18 (105)
T ss_pred eCCCC-CCCCHHHHHH
Confidence 33344 8999999985
No 130
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=69.42 E-value=6.1 Score=25.73 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=31.0
Q ss_pred HHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceee
Q psy6621 74 TMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDY 123 (133)
Q Consensus 74 ~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 123 (133)
.+...|...|....|.....+..| .+.|.+.+.+|.+.|++.+-.+.+
T Consensus 11 ~IL~hl~~~~~Dy~k~ia~~l~~~--~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 11 KILQHLKKAGPDYAKSIARRLKIP--LEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHCCCcHHHHHHHHCCC--HHHHHHHHHHHHHCCCeEEecCcc
Confidence 445555666655444333333332 357899999999999999876653
No 131
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=69.39 E-value=15 Score=28.10 Aligned_cols=54 Identities=13% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhcCc---ccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 65 REWTVGNIATMKSQLQGFGC---KFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lgi---~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
..+++.+++...+.+++.|+ .+||+.+. .....+...+.++..+|.++|++...
T Consensus 95 ~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~~lt~a 151 (253)
T cd06544 95 DSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNGVIKVA 151 (253)
T ss_pred hhHHHHHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcCCeEEE
Confidence 45666777777777777754 56788652 23356778888999999988866543
No 132
>KOG2713|consensus
Probab=67.55 E-value=22 Score=28.28 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=37.1
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCcee-eecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRV-FQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V-~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|||-+|||+-.+.+-. ..+.+...- ... .+.+=.|.|-+ ...-+|. .-+++.-.+...|-+-|
T Consensus 21 QPTG~~HLGNYLGai~~--Wv~LQ~~~d-----~~~~~~f~vvDlHaI-------Tvp~dp~-~lrq~~~dm~A~lLAcG 85 (347)
T KOG2713|consen 21 QPTGIPHLGNYLGAIKP--WVQLQNEYD-----KNILVLFSVVDLHAI-------TVPQDPA-ELRQATHDMAASLLACG 85 (347)
T ss_pred CCCCCchhhhhhhhhhH--HHHHHHHhc-----CCceEEEEEeeceee-------cCCCChH-HHHHHHHHHHHHHHHhc
Confidence 38999999999987643 333332222 111 22333455532 3344455 33555666666666777
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
|...
T Consensus 86 Idp~ 89 (347)
T KOG2713|consen 86 IDPE 89 (347)
T ss_pred cCcc
Confidence 7554
No 133
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=65.95 E-value=25 Score=27.28 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
.+.+++.+.+.+++. ||.+||+.......+.|..+++++-..|.++|++.
T Consensus 88 r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~l 140 (313)
T cd02874 88 RQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYTL 140 (313)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 344555666555555 67778877544444567788888888888777643
No 134
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=60.21 E-value=22 Score=27.55 Aligned_cols=50 Identities=24% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
...+++.+.+.+++. ||.+||+.........|..+++++=.+|.++|+..
T Consensus 89 R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~l 141 (298)
T cd06549 89 RAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQL 141 (298)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcEE
Confidence 345566666666666 67788976544444567788888888888777643
No 135
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=58.24 E-value=76 Score=23.70 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC---cccccCCce
Q psy6621 23 AECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG---CKFNWESEL 92 (133)
Q Consensus 23 il~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg---i~~d~~~~~ 92 (133)
-..+.++.+| -+|+...|-.+.+... ..-.++ +-.+.+.+.+.+.+.+.| |.+||+.+.
T Consensus 55 ~~i~~l~~kG-----~KVl~sigg~~~~~~~-----~~~~~~-~~~~~fa~~l~~~v~~yglDGiDiD~E~~~ 116 (255)
T cd06542 55 TYIRPLQAKG-----TKVLLSILGNHLGAGF-----ANNLSD-AAAKAYAKAIVDTVDKYGLDGVDFDDEYSG 116 (255)
T ss_pred HHHHHHhhCC-----CEEEEEECCCCCCCCc-----cccCCH-HHHHHHHHHHHHHHHHhCCCceEEeeeecc
Confidence 3455568899 8988777666555432 011122 223555566666666664 667787554
No 136
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=57.22 E-value=17 Score=24.13 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceee
Q psy6621 73 ATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDY 123 (133)
Q Consensus 73 ~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 123 (133)
+.....++.||..+.|.....+....+-..+.+++..+..+|+.+-+.+..
T Consensus 6 KL~l~EFqelGF~v~~~~~~~~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~ 56 (101)
T PF04320_consen 6 KLHLDEFQELGFEVSCRFAEGTSEEQIDAFVDAFIDVIEPNGLAFGGGGYE 56 (101)
T ss_pred hhhhhhhheeEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCEEecCCcc
Confidence 344556777999888766555666777788888888888899999886543
No 137
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=57.17 E-value=12 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeecccCC-CCC--HHHHHHH-HHcCCChHHHHHHHHHH
Q psy6621 18 KTHSGAECRLAGINSIIKGPVRVFQPMGWD-AFG--LPAENAA-HQHGIDPREWTVGNIAT 74 (133)
Q Consensus 18 ~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D-~~G--~~i~~~a-~~~g~~~~~~~~~~~~~ 74 (133)
.+++|+++++-+. -+|+.-.|+| |.| .+++.++ .+.|+++.++.++..+.
T Consensus 6 ~tigeIv~~~P~a-------a~VF~~~gIdfCcgg~~tLeeA~~~~~gld~~~ll~eLn~~ 59 (224)
T PRK13276 6 DIVADVVTDYPKA-------ADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDV 59 (224)
T ss_pred CCHHHHHHhCccH-------HHHHHHcCCCcCCCCChhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4577777774433 3355566666 443 6788888 89999998876665554
No 138
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=55.60 E-value=82 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhc---CcccccCCcee-----cCChhHHHHHHHHHHHHHHC
Q psy6621 69 VGNIATMKSQLQGF---GCKFNWESELA-----TCDPKYYKWTQALFLDLYHA 113 (133)
Q Consensus 69 ~~~~~~~~~~l~~l---gi~~d~~~~~~-----T~~~~~~~~v~~~f~~L~~~ 113 (133)
+.+++.+.+.+++. ||.+||+.+.. .....+..+++++-.+|.+.
T Consensus 98 ~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~ 150 (362)
T cd02872 98 KTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPE 150 (362)
T ss_pred HHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555566666 77788987643 11235667777777777766
No 139
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=55.26 E-value=98 Score=25.22 Aligned_cols=88 Identities=9% Similarity=-0.055 Sum_probs=52.8
Q ss_pred CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCH---------------HHHHHHHHcCCCh---HHHHH
Q psy6621 8 ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGL---------------PAENAAHQHGIDP---REWTV 69 (133)
Q Consensus 8 g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~---------------~i~~~a~~~g~~~---~~~~~ 69 (133)
|++|++|.-.+- + -+=..+++++|++. .+..++++.|.+. .+.+.
T Consensus 48 GD~Hl~NFG~~~------------~-----~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~~~ 110 (385)
T PF10009_consen 48 GDAHLENFGAFA------------S-----PEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKAVR 110 (385)
T ss_pred ccchhhccCccc------------C-----CCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 789998876652 2 33345566666652 3456677778864 56788
Q ss_pred HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHC
Q psy6621 70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHA 113 (133)
Q Consensus 70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~ 113 (133)
.+.+.+.+.|..+.-.-.....+ ....+-.+.+..++++..++
T Consensus 111 ~~~~~Y~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 111 AFLEGYREALADYAGMDPLDVWY-FTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHHHHHHHHHhcCCChhhcee-cCchhhHHHHHHHHHHHHHh
Confidence 88888888888774422211222 23333455666666665554
No 140
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=54.61 E-value=86 Score=24.84 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=39.0
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceee-ecccCCCCCHHH--HHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVF-QPMGWDAFGLPA--ENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~-~~~G~D~~G~~i--~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
.++|.+.+... ...+.++.++++ -.|+ -+-||+.-+... ....... + .+-.+.+++.+.+.++.
T Consensus 39 ~~~g~l~~~~~-----~~~~~~~~~~k~-----lkvllsiGG~~~s~~~~~~~~f~~~~--~-~~~R~~Fi~si~~~~~~ 105 (345)
T cd02878 39 TSDFSVDVSSV-----QEQFSDFKKLKG-----VKKILSFGGWDFSTSPSTYQIFRDAV--K-PANRDTFANNVVNFVNK 105 (345)
T ss_pred cCCCeEeeccc-----HHHHHHHHhhcC-----cEEEEEEeCCCCCCCCccchhhHhhc--C-HHHHHHHHHHHHHHHHH
Confidence 35666665421 233556677777 5554 566666432210 0011111 2 23345556666666666
Q ss_pred c---CcccccCCce
Q psy6621 82 F---GCKFNWESEL 92 (133)
Q Consensus 82 l---gi~~d~~~~~ 92 (133)
. ||.+||+.+.
T Consensus 106 ~~fDGidiDwE~P~ 119 (345)
T cd02878 106 YNLDGVDFDWEYPG 119 (345)
T ss_pred cCCCceeecccCCc
Confidence 6 7778998764
No 141
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=54.11 E-value=35 Score=24.38 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceecC---ChhHHHHHHHHHHHHHHCCC
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELATC---DPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T~---~~~~~~~v~~~f~~L~~~G~ 115 (133)
.+++++.+.+.++.. ||.+||+.+.... ...+..+++++=.+|-++++
T Consensus 89 ~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 89 RAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCc
Confidence 344555555555555 6778888765443 24556666666555555454
No 142
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=53.94 E-value=23 Score=20.15 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++++|.++|+|.+..
T Consensus 36 ~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 36 STVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeC
Confidence 46888999999999999864
No 143
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=52.96 E-value=44 Score=26.79 Aligned_cols=58 Identities=19% Similarity=0.089 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCCCCCceeeecc--cCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCcccc
Q psy6621 20 HSGAECRLAGINSIIKGPVRVFQPM--GWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 20 ~~Dil~R~~r~~G~~~~~~~V~~~~--G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d 87 (133)
..=+++|-+...| .+|.++. |||.|+.....-+.. ..-.+.-+..+.++|+..|.+-+
T Consensus 233 ~~~l~a~~~~~~g-----~~v~~V~~gGwDTH~~~~~~~~~l-----l~~L~~alaaf~~dL~~~g~~d~ 292 (392)
T PF07394_consen 233 QQLLLARRLIEAG-----VRVVFVSLGGWDTHSNQGNRHARL-----LPELDQALAAFIQDLKERGLLDD 292 (392)
T ss_pred HHHHHHHHHhhcC-----CEEEEECCCCccCccccHhHHHHH-----HHHHHHHHHHHHHHHHhcCCcCc
Confidence 3346677666677 8888777 999998543322222 13346678888899999887543
No 144
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=51.05 E-value=24 Score=24.80 Aligned_cols=36 Identities=6% Similarity=-0.013 Sum_probs=19.9
Q ss_pred CcCcchHHHHHHHH-HHHHHHHhhcCCCCCCceeeecccCCC
Q psy6621 8 ELTCLGGVVVKTHS-GAECRLAGINSIIKGPVRVFQPMGWDA 48 (133)
Q Consensus 8 g~lHlGH~~~~~~~-Dil~R~~r~~G~~~~~~~V~~~~G~D~ 48 (133)
|+|||||++.+... +-+-+-...++ ..|.+-++.|.
T Consensus 42 GPlnL~~lyrfc~~l~~~L~~~~~~~-----k~iv~yts~d~ 78 (141)
T PF14671_consen 42 GPLNLAQLYRFCCKLNKKLKSPELKK-----KKIVHYTSSDP 78 (141)
T ss_dssp ----HHHHHHHHHHHHHHHH-GGGTT-----SEEEEEE-S-H
T ss_pred CCccHHHHHHHHHHHHHHHcCHHhcC-----CeEEEECCCCh
Confidence 89999999986553 33333344567 88888888775
No 145
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=49.89 E-value=37 Score=18.75 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCeEEecee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~ 122 (133)
..+...+.+|.+.|++....+.
T Consensus 35 ~tv~~~l~~L~~~g~i~~~~~~ 56 (60)
T smart00345 35 TTVREALSRLEAEGLVQRRPGS 56 (60)
T ss_pred HHHHHHHHHHHHCCCEEEecCC
Confidence 4688899999999999866543
No 146
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=49.50 E-value=27 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCeEEec-eeeeecCCC
Q psy6621 101 KWTQALFLDLYHAGLVYRKE-VDYSQNLPT 129 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~-~~v~~~~~~ 129 (133)
..+..++..|.++|+|.+.. .+..|....
T Consensus 37 ~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 37 KEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 36888999999999998765 546776543
No 147
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=49.09 E-value=7.2 Score=22.69 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=11.1
Q ss_pred CCCCCcCcchHHHHH
Q psy6621 4 CTEEELTCLGGVVVK 18 (133)
Q Consensus 4 ~~png~lHlGH~~~~ 18 (133)
.+.-+++|.||..-.
T Consensus 5 ~G~Fdp~H~GH~~~l 19 (66)
T TIGR00125 5 VGTFDPFHLGHLDLL 19 (66)
T ss_pred cCccCCCCHHHHHHH
Confidence 455578999999743
No 148
>KOG2623|consensus
Probab=48.46 E-value=49 Score=27.46 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc-CC-CCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 6 EEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG-WD-AFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 6 png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G-~D-~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
||. .||+||+...+. +.+++ .+| +++.-+.| .+ -.|+|.-++.++.-+ ..+..+.+...+.+++.++
T Consensus 72 PTA~SLHvGNLl~lm~---L~hfq-r~G-----h~~ialIGgATa~vGDPSGrktER~~l-~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 72 PTAESLHVGNLLALMV---LIHFQ-RAG-----HRPIALIGGATASVGDPSGRKTERGQL-AEDTREANSRSITQQLCKI 141 (467)
T ss_pred CcHHhhhhcchHHHHH---HHHHH-HcC-----CCceEEeccccccccCCCCCccchhhh-hhHHHHHhHHHHHHHHHHH
Confidence 565 699999988543 44444 467 77765444 32 234443222211111 1344555666666666665
No 149
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=48.37 E-value=29 Score=23.94 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHCCCeEEeceee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDY 123 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v 123 (133)
..++..+++|.+.|+|++.+.+.
T Consensus 57 Stv~rsl~~L~~~GlV~Rek~~~ 79 (126)
T COG3355 57 STVYRSLQNLLEAGLVEREKVNL 79 (126)
T ss_pred HHHHHHHHHHHHcCCeeeeeecc
Confidence 46899999999999999977653
No 150
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=46.16 E-value=42 Score=18.94 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+...+.+|.++|++....+
T Consensus 40 ~~v~~~l~~L~~~G~i~~~~~ 60 (66)
T cd07377 40 TTVREALRELEAEGLVERRPG 60 (66)
T ss_pred HHHHHHHHHHHHCCCEEecCC
Confidence 468889999999999876544
No 151
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.06 E-value=76 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHCCC
Q psy6621 98 KYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 98 ~~~~~v~~~f~~L~~~G~ 115 (133)
.|...+..+.+.|.++|.
T Consensus 75 ~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 75 GHLTLVPGLVEALREAGV 92 (143)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 344444444444444443
No 152
>PF13730 HTH_36: Helix-turn-helix domain
Probab=45.27 E-value=24 Score=19.73 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHCCCe
Q psy6621 101 KWTQALFLDLYHAGLV 116 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~i 116 (133)
..|+..++.|.++|+|
T Consensus 40 ~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 40 RTVQRAIKELEEKGLI 55 (55)
T ss_pred HHHHHHHHHHHHCcCC
Confidence 4688888999998875
No 153
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=43.98 E-value=85 Score=26.23 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=56.8
Q ss_pred CCC-cCcchHHHH--HHHHHHHHHHHhhcCCCCCCc-eeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 6 EEE-LTCLGGVVV--KTHSGAECRLAGINSIIKGPV-RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 6 png-~lHlGH~~~--~~~~Dil~R~~r~~G~~~~~~-~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
.|| +.++|=-+. ...+..++|.+.+.|..+|.. .+.+-.|...-|.-....|++.|.+.-.......+.+.+.++.
T Consensus 101 TTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~d 180 (438)
T COG1541 101 TTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKD 180 (438)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHh
Confidence 345 455665554 567889999999999544432 2345567777776666777777654222212334444444444
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G 114 (133)
++. ......|.| ...+.+.+.+.|
T Consensus 181 f~~------tvI~~tps~---~l~lae~~~~~G 204 (438)
T COG1541 181 FKP------TVIAATPSY---LLYLAEEAEEEG 204 (438)
T ss_pred cCC------cEEEEChHH---HHHHHHHHHHcC
Confidence 443 334444544 445555666666
No 154
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=43.62 E-value=18 Score=25.17 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=25.3
Q ss_pred CCC-CCCCCcCcchHHHHHHHHHHHHHHHh
Q psy6621 1 MYD-CTEEELTCLGGVVVKTHSGAECRLAG 29 (133)
Q Consensus 1 ~y~-~~png~lHlGH~~~~~~~Dil~R~~r 29 (133)
||| .-|.|+.|.|...-+++.|.+-|.+.
T Consensus 1 m~p~~~~~~~~~~~q~~KfT~~es~drIKe 30 (135)
T PF03920_consen 1 MFPQSRHPGPSQPPQPFKFTTSESCDRIKE 30 (135)
T ss_pred CCCCCCCCCCCCCCCCccchHHHHHHHHHH
Confidence 788 45778999999999999999999876
No 155
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.60 E-value=33 Score=24.47 Aligned_cols=23 Identities=9% Similarity=0.546 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc
Q psy6621 65 REWTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lgi~~d 87 (133)
..|++...+.|-+.|+.|||+.|
T Consensus 128 Q~~VD~~LDRI~~LMe~LGl~~d 150 (169)
T COG3078 128 QQWVDAKLDRIDELMEKLGLSYD 150 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCccC
Confidence 68999999999999999999986
No 156
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=42.92 E-value=48 Score=19.46 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+...+..|.++|+|.+...
T Consensus 37 ~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 37 STVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 468899999999999997653
No 157
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=42.65 E-value=43 Score=17.36 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHCCCe
Q psy6621 101 KWTQALFLDLYHAGLV 116 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~i 116 (133)
+.|..++.+|.++|+|
T Consensus 17 ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 17 ETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5688889999999886
No 158
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=42.56 E-value=29 Score=22.05 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCCeEEece
Q psy6621 104 QALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 104 ~~~f~~L~~~G~iy~~~~ 121 (133)
..+|+++.++|.||..+.
T Consensus 36 ~~if~eCVeqGFiYVs~~ 53 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKY 53 (89)
T ss_pred cHHHHHHHhcceEEEEee
Confidence 468999999999998543
No 159
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=42.33 E-value=24 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=23.8
Q ss_pred eeecccCC-CC--CHHHHHHHHHcCCChHHHHHHHHHHH
Q psy6621 40 VFQPMGWD-AF--GLPAENAAHQHGIDPREWTVGNIATM 75 (133)
Q Consensus 40 V~~~~G~D-~~--G~~i~~~a~~~g~~~~~~~~~~~~~~ 75 (133)
|+.-.|+| |. +.+++.++++.|+++.++.++.....
T Consensus 14 vf~~~gid~cc~g~~~l~~a~~~~g~d~~~~l~~ln~~~ 52 (216)
T TIGR03652 14 IFRKYGIDFCCGGNVSLAEACKEKGLDPDEILAELNALQ 52 (216)
T ss_pred HHHHcCCCccCCCcchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44445555 32 46888889999999877766555444
No 160
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=41.90 E-value=59 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.|..++..|.+.|+|++..+.-.|
T Consensus 40 TVR~Al~~L~~eGli~r~~G~GTf 63 (233)
T TIGR02404 40 TVRKALNLLTEAGYIQKIQGKGSI 63 (233)
T ss_pred HHHHHHHHHHHCCCEEEeCCceEE
Confidence 588899999999999988766555
No 161
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=41.85 E-value=47 Score=18.67 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+..++.+|.++|+|.+...
T Consensus 32 ~~~t~~i~~L~~~g~I~r~~~ 52 (59)
T PF01047_consen 32 STVTRIIKRLEKKGLIERERD 52 (59)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHHCCCEEeccC
Confidence 457788999999999998653
No 162
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=40.95 E-value=51 Score=18.97 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+..++++|.++|++.+...
T Consensus 33 ~~vs~~i~~L~~~glv~~~~~ 53 (68)
T PF13463_consen 33 STVSRIIKKLEEKGLVEKERD 53 (68)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCC
Confidence 457789999999999976543
No 163
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=40.67 E-value=48 Score=21.22 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~~~~ 128 (133)
+.|..++.+|.++|+|.+..+.-.+++.
T Consensus 62 ~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 62 THVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred HHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 4688999999999999977644444443
No 164
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=39.76 E-value=65 Score=23.86 Aligned_cols=24 Identities=17% Similarity=0.082 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.+..++..|.+.|+|++..+.-.|
T Consensus 49 TvR~Al~~L~~eGli~r~~G~GTf 72 (241)
T PRK11402 49 TIRKAISDLVADGVLIRWQGKGTF 72 (241)
T ss_pred HHHHHHHHHHHCCCEEEecCceeE
Confidence 588899999999999988766554
No 165
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=38.83 E-value=70 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.+.+++..|.+.|+|++..+.-.|
T Consensus 48 TvR~Al~~L~~eGli~r~~G~Gtf 71 (238)
T TIGR02325 48 TVRRAIAALVERGLLRAEQGRGTF 71 (238)
T ss_pred HHHHHHHHHHHCCCEEEecCCEEE
Confidence 588899999999999987665444
No 166
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=38.54 E-value=47 Score=21.84 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCeEEec--eeeeecC
Q psy6621 100 YKWTQALFLDLYHAGLVYRKE--VDYSQNL 127 (133)
Q Consensus 100 ~~~v~~~f~~L~~~G~iy~~~--~~v~~~~ 127 (133)
...|..++.+|.+||++.+.. +.-.|.|
T Consensus 35 ~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y~p 64 (115)
T PF03965_consen 35 YSTVQTLLNRLVEKGFLTREKIGRAYVYSP 64 (115)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTCEEEEE
T ss_pred hhHHHHHHHHHHhCCceeEeecCCceEEEe
Confidence 357999999999999999764 3334444
No 167
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=38.52 E-value=88 Score=18.69 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..|+..++.|.++|+|-+..
T Consensus 41 ~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 41 STVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp HHHHHHHHHHHHTTSEEEGC
T ss_pred HHHHHHHHHHHHCcCccCCC
Confidence 46889999999999998764
No 168
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=38.46 E-value=86 Score=24.37 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhc---Ccccc-cCCceec----CChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 67 WTVGNIATMKSQLQGF---GCKFN-WESELAT----CDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~l---gi~~d-~~~~~~T----~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
..+.+++.+.+.+++. ||.+| |+.+-.. ....+..+++++-.+|.++|+...
T Consensus 92 ~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~l~ 151 (318)
T cd02876 92 EREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSANLKLI 151 (318)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcCCEEE
Confidence 3445666667767776 66778 7765322 114566777777777877776544
No 169
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=38.35 E-value=1.8e+02 Score=22.27 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=38.7
Q ss_pred ceeeecccCCCCCH-HHHHHHHHcCCChHHHHHHHHHHHHHHHHhc---CcccccCCceec----CChhHHHHHHHHHHH
Q psy6621 38 VRVFQPMGWDAFGL-PAENAAHQHGIDPREWTVGNIATMKSQLQGF---GCKFNWESELAT----CDPKYYKWTQALFLD 109 (133)
Q Consensus 38 ~~V~~~~G~D~~G~-~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l---gi~~d~~~~~~T----~~~~~~~~v~~~f~~ 109 (133)
-.|....|-...+. .....+.. .+..+.+++.+.+.++.. ||.+||+.+..+ ....|..++.++-..
T Consensus 74 ~kvllsigg~~~~~~~~~~~~~~-----~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 74 VKVLLSIGGWGMSSDGFSQLLSN-----PAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp -EEEEEEEETTSSHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecccccccccccccccc-----HHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 77776655554444 32222211 123344455555555554 566788877554 345677777777777
Q ss_pred HHH
Q psy6621 110 LYH 112 (133)
Q Consensus 110 L~~ 112 (133)
|.+
T Consensus 149 l~~ 151 (343)
T PF00704_consen 149 LKR 151 (343)
T ss_dssp HHH
T ss_pred hcc
Confidence 777
No 170
>PRK11702 hypothetical protein; Provisional
Probab=38.30 E-value=49 Score=22.24 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHhcCcccccCCceecCChhHHHHHHHHHHH-HHHCCCeEEecee
Q psy6621 75 MKSQLQGFGCKFNWESELATCDPKYYKWTQALFLD-LYHAGLVYRKEVD 122 (133)
Q Consensus 75 ~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~-L~~~G~iy~~~~~ 122 (133)
....++.||..+.|...-.+.+..+-..+..++.. +..+|+.+-+.+.
T Consensus 14 ~v~EFqeLGF~v~~~~~~~~~~e~~D~~vD~fIde~Ie~ngL~f~G~G~ 62 (108)
T PRK11702 14 HIDEFQELGFSVNWRFPEGTSEEQIDATVDAFIDEVIEPNGLAFDGSGY 62 (108)
T ss_pred hhHhhHhheeEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCceecCCcc
Confidence 35566779998887655445556666677777754 7788888877553
No 171
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=38.20 E-value=66 Score=18.65 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCeEEeceeee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYS 124 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~ 124 (133)
..+.+++..|.+.|+++...+.-+
T Consensus 39 ~tvr~al~~L~~~g~i~~~~~~G~ 62 (64)
T PF00392_consen 39 TTVREALRRLEAEGLIERRPGRGT 62 (64)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEE
T ss_pred cHHHHHHHHHHHCCcEEEECCceE
Confidence 368899999999999998765443
No 172
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=37.97 E-value=34 Score=21.53 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCeEEecee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~ 122 (133)
+.++....+|++||+|-.-.+-
T Consensus 34 p~~i~a~~RLheKGLI~~pdGg 55 (77)
T TIGR02647 34 PAAVAAAARLHEKGLTTQPDGG 55 (77)
T ss_pred HHHHHHHHHHHHcCCccCCCCC
Confidence 4688899999999999865443
No 173
>PRK14863 bifunctional regulator KidO; Provisional
Probab=37.78 E-value=92 Score=24.04 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCccc-ccCCceecCChhH-----HHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NWESELATCDPKY-----YKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~~~~~~T~~~~~-----~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||+.. |. +.-+.|.. ...+.+.+.+|.++|.|-
T Consensus 86 ~~i~~~~e~SL~rLg~d~iDl---~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir 137 (292)
T PRK14863 86 DFVEAEARASLRRMGVERADA---ILVHSPTELFGPHGAALWERLQALKDQGLFA 137 (292)
T ss_pred HHHHHHHHHHHHHhCCCccCe---EEEeCchhhcCcchHHHHHHHHHHHHcCCcc
Confidence 345677889999999743 41 11111111 134568899999999984
No 174
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=37.74 E-value=1.1e+02 Score=22.86 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 65 REWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+++.+...+.+.+++++.||..... ...+..+....++|.+-.
T Consensus 91 k~v~~~v~~~f~~~a~~~gv~~~~~-----------~~~~~~l~~~l~~G~~~l 133 (207)
T PF11814_consen 91 KEVMELVHEDFREEAEQAGVPVHYR-----------PLSLADLRAALAAGAIVL 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCceecC-----------CCCHHHHHHHHHCCCEEE
Confidence 5666777788999999999977521 224456677777787543
No 175
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=37.57 E-value=82 Score=23.59 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCccc-c---cCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-N---WESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d---~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||+.. | ++.+ .......+.+...+.+|.++|+|-.
T Consensus 82 ~~i~~~~~~sL~~L~~d~iDl~~lH~~--~~~~~~~~~~~~~l~~l~~~G~ir~ 133 (283)
T PF00248_consen 82 DSIRESLERSLERLGTDYIDLLLLHWP--DPSEDALEEVWEALEELKKEGKIRH 133 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSEEEEEESSS--STTSSHHHHHHHHHHHHHHTTSEEE
T ss_pred cccccccccccccccccchhccccccc--cccccccchhhhhhhhccccccccc
Confidence 466788888999999743 5 1222 1111235678899999999999854
No 176
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=37.29 E-value=13 Score=26.19 Aligned_cols=16 Identities=19% Similarity=0.036 Sum_probs=12.9
Q ss_pred CCCCCCCCcCcchHHH
Q psy6621 1 MYDCTEEELTCLGGVV 16 (133)
Q Consensus 1 ~y~~~png~lHlGH~~ 16 (133)
+|+++.-..+|.||+.
T Consensus 5 V~~~G~FDl~H~GHi~ 20 (150)
T cd02174 5 VYVDGCFDLFHYGHAN 20 (150)
T ss_pred EEEeCccCCCCHHHHH
Confidence 3667777899999986
No 177
>KOG2805|consensus
Probab=36.61 E-value=75 Score=25.67 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcCCCCCCceee--ecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCcccccCCceecCCh
Q psy6621 20 HSGAECRLAGINSIIKGPVRVF--QPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDP 97 (133)
Q Consensus 20 ~~Dil~R~~r~~G~~~~~~~V~--~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~ 97 (133)
=+-+-|+.++.+| ++|. |+-+||..+..-. ..|.+ .-.+.-+...+.|+|.++ ......
T Consensus 17 DSsVaa~Ll~~~g-----~~v~gv~M~nWd~~de~~s-------~cp~e---~D~~da~~Vc~~LnI~~~----~Vnf~k 77 (377)
T KOG2805|consen 17 DSSVAARLLAARG-----YNVTGVFMKNWDSLDEFGS-------QCPAE---RDWKDAKRVCKQLNIPLH----QVNFVK 77 (377)
T ss_pred hHHHHHHHHHhcC-----CCeeEEeeecccccccccc-------CCCch---hhHHHHHHHHHHhCCeeE----EEeeHH
Confidence 3456788899999 9995 7888876533210 11110 011122233455666553 112234
Q ss_pred hHHHHHHHHHHHHHHCCC
Q psy6621 98 KYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 98 ~~~~~v~~~f~~L~~~G~ 115 (133)
+|-..|-.-|...+++|.
T Consensus 78 EYW~~Vfs~~L~~Y~~G~ 95 (377)
T KOG2805|consen 78 EYWNDVFSPFLEEYENGR 95 (377)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 455555555666666665
No 178
>KOG2145|consensus
Probab=36.28 E-value=19 Score=28.77 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=18.8
Q ss_pred CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCC
Q psy6621 8 ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWD 47 (133)
Q Consensus 8 g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D 47 (133)
+.+||||+..++. ++|+.-. ++|-.+--.+
T Consensus 97 ~smHlGHliPFif----tKwlQe~------F~vpLVIqlT 126 (397)
T KOG2145|consen 97 ESMHLGHLIPFIF----TKWLQDV------FDVPLVIQLT 126 (397)
T ss_pred cccccccchhHHH----HHHHHHH------hCCceEEEec
Confidence 5799999998864 4454332 5665444443
No 179
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=35.47 E-value=50 Score=23.94 Aligned_cols=23 Identities=4% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc
Q psy6621 65 REWTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lgi~~d 87 (133)
..|+++..+.|...|..|||..|
T Consensus 128 Q~yvD~~LdRi~~Lm~~LGi~~d 150 (169)
T PF04220_consen 128 QKYVDEKLDRIEELMEELGIEDD 150 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 68999999999999999999875
No 180
>PRK14999 histidine utilization repressor; Provisional
Probab=35.05 E-value=87 Score=23.22 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.|.+++..|.+.|+|++..+.-.|
T Consensus 52 TVR~Al~~L~~eGli~r~~GkGTf 75 (241)
T PRK14999 52 TINRALRELTDEGWLVRLQGVGTF 75 (241)
T ss_pred HHHHHHHHHHHCCCEEEecCcEEE
Confidence 477788888888888876654444
No 181
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=34.82 E-value=54 Score=21.02 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHCCCeEE
Q psy6621 101 KWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~ 118 (133)
..+..++..|.+.|+||.
T Consensus 80 ~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 80 NEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCeEec
Confidence 578999999999999996
No 182
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=34.77 E-value=77 Score=21.32 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 77 SQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 77 ~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+..+.|||-.|.. ..|..|+..+.-.+-++.|.+++.++
T Consensus 74 ~~AR~LGI~VD~R--Rr~~~~en~eal~k~ik~ll~~~~~~ 112 (113)
T COG4352 74 RKARTLGIAVDHR--RRNRNPENFEALVKRIKELLEKIIVF 112 (113)
T ss_pred HHHHhhCcceehh--hccCCHHHHHHHHHHHHHHHhcCccC
Confidence 3457899988843 35777777777777788888876554
No 183
>PRK05244 Der GTPase activator; Provisional
Probab=34.47 E-value=53 Score=24.01 Aligned_cols=23 Identities=9% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc
Q psy6621 65 REWTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lgi~~d 87 (133)
.+|+++..+.|...|..|||..+
T Consensus 127 Q~yvD~~LdRie~LM~~LGI~~e 149 (177)
T PRK05244 127 QKWVDEKLDRIDELMEKLGISDD 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 68999999999999999999875
No 184
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=34.21 E-value=60 Score=17.57 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCe
Q psy6621 101 KWTQALFLDLYHAGLV 116 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~i 116 (133)
..+...+++|.++|+|
T Consensus 32 ~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 32 STVNRYLKKLEEKGLI 47 (48)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHCcCc
Confidence 4688889999999987
No 185
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=33.31 E-value=1.2e+02 Score=23.57 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhc---CcccccCCceec--CChhHHHHHHHHHHHHHH
Q psy6621 67 WTVGNIATMKSQLQGF---GCKFNWESELAT--CDPKYYKWTQALFLDLYH 112 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~l---gi~~d~~~~~~T--~~~~~~~~v~~~f~~L~~ 112 (133)
..+.+++.+.+.+++. ||.+||+.+... ....+..+++++=..|.+
T Consensus 91 ~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~ 141 (334)
T smart00636 91 SRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDK 141 (334)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666 777889876442 234566677776666654
No 186
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=32.67 E-value=85 Score=24.59 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCccc-ccCCceecCCh---hH--HHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NWESELATCDP---KY--YKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~~~~~~T~~~---~~--~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||+.+ |. +.-+-| .+ ...++..+++|.+.|+|-.
T Consensus 85 ~~~~~a~e~Sl~rLg~dyvDL---yLiHwP~~~~~~~~~etw~alE~l~~~G~ir~ 137 (280)
T COG0656 85 DETLKALEASLKRLGLDYVDL---YLIHWPVPNKYVVIEETWKALEELVDEGLIRA 137 (280)
T ss_pred chHHHHHHHHHHHhCCCceeE---EEECCCCCccCccHHHHHHHHHHHHhcCCccE
Confidence 667899999999999953 51 122222 12 3578889999999998753
No 187
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=32.41 E-value=18 Score=25.47 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=12.1
Q ss_pred CCCCCCCcCcchHHH
Q psy6621 2 YDCTEEELTCLGGVV 16 (133)
Q Consensus 2 y~~~png~lHlGH~~ 16 (133)
|+++.-..+|.||+.
T Consensus 6 ~~~G~FD~~H~GHi~ 20 (152)
T cd02173 6 YVDGAFDLFHIGHIE 20 (152)
T ss_pred EEcCcccCCCHHHHH
Confidence 566677799999985
No 188
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=32.30 E-value=40 Score=22.45 Aligned_cols=50 Identities=20% Similarity=0.075 Sum_probs=32.4
Q ss_pred ceeeecccCCCCCHHHHHHHHHc------CCC----hHHHHHHHHHHHHHHHHhcCcccc
Q psy6621 38 VRVFQPMGWDAFGLPAENAAHQH------GID----PREWTVGNIATMKSQLQGFGCKFN 87 (133)
Q Consensus 38 ~~V~~~~G~D~~G~~i~~~a~~~------g~~----~~~~~~~~~~~~~~~l~~lgi~~d 87 (133)
..|..+.|+|..+.-+...|+.. |-+ .-++.-...+.+.+.|..+|+..+
T Consensus 40 K~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~~~IeiQGdhr~~v~~~L~~~G~k~k 99 (104)
T COG0023 40 KTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKDGEIEIQGDHRDKVKELLIKKGFKVK 99 (104)
T ss_pred cEEEEEeCcccchhhHHHHHHHHHHHcCCCceecCCEEEEeChHHHHHHHHHHHcCCchh
Confidence 89999999999887776666532 211 123444455666666666777654
No 189
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=32.28 E-value=82 Score=16.52 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+...+.+|.++|++....
T Consensus 23 ~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 23 ETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred HHHHHHHHHHHHCCCEEEeC
Confidence 45888999999999998655
No 190
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=31.98 E-value=84 Score=18.74 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHCCCeEEecee
Q psy6621 100 YKWTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 100 ~~~v~~~f~~L~~~G~iy~~~~~ 122 (133)
...+...+..|+++|++-++...
T Consensus 44 ~~~ik~~Ie~LIekeyi~Rd~~d 66 (68)
T PF10557_consen 44 VSDIKKRIESLIEKEYIERDEDD 66 (68)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSE
T ss_pred HHHHHHHHHHHHHhhhhhcCCCC
Confidence 35688899999999999998654
No 191
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=31.76 E-value=1e+02 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCce
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESEL 92 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~ 92 (133)
.+.+++.+.+.++.. ||.+||+.+.
T Consensus 106 R~~Fi~siv~~l~~~~fDGidiDWEyP~ 133 (413)
T cd02873 106 RNAFINSAHSLLKTYGFDGLDLAWQFPK 133 (413)
T ss_pred HHHHHHHHHHHHHHcCCCCeEeeeeCCC
Confidence 445566666666666 7778998764
No 192
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=31.73 E-value=66 Score=21.88 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCeEEe--ceeeeecC
Q psy6621 101 KWTQALFLDLYHAGLVYRK--EVDYSQNL 127 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~--~~~v~~~~ 127 (133)
..+..++.+|.+||++.+. .+.-.|.|
T Consensus 37 tTv~T~L~rL~~KG~v~~~k~gr~~~Y~p 65 (130)
T TIGR02698 37 STIKTLLGRLVDKGCLTTEKEGRKFIYTA 65 (130)
T ss_pred HHHHHHHHHHHHCCceeeecCCCcEEEEe
Confidence 4588899999999999854 34445554
No 193
>PLN02907 glutamate-tRNA ligase
Probab=31.32 E-value=72 Score=28.34 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=28.4
Q ss_pred ecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCccc
Q psy6621 42 QPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKF 86 (133)
Q Consensus 42 ~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 86 (133)
++.||||-.+|+....+++|++|+++ .+-+..+|++-
T Consensus 462 ~v~Gwddpr~pt~~~~rrrG~~~eai--------~~f~~~~g~s~ 498 (722)
T PLN02907 462 KVEGWDDPRFPTVQGIVRRGLKIEAL--------KQFILSQGASK 498 (722)
T ss_pred cccCCCCCCcccHHHHHHcCCCHHHH--------HHHHHHhCCCc
Confidence 66799999999998899999998765 33445566644
No 194
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=30.45 E-value=84 Score=18.36 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+.+.+++|.++|++....
T Consensus 37 ~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 37 PTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp HHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHCCCEEecC
Confidence 46889999999999987654
No 195
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=29.84 E-value=83 Score=18.20 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCcc
Q psy6621 49 FGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCK 85 (133)
Q Consensus 49 ~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 85 (133)
+.+|++.+|++.|+++..+ ++..+++||.
T Consensus 14 fhlp~~eAA~~Lgv~~T~L--------Kr~CR~~GI~ 42 (52)
T PF02042_consen 14 FHLPIKEAAKELGVSVTTL--------KRRCRRLGIP 42 (52)
T ss_pred hCCCHHHHHHHhCCCHHHH--------HHHHHHcCCC
Confidence 3467888899999886544 4455778874
No 196
>PHA02780 hypothetical protein; Provisional
Probab=29.61 E-value=1.3e+02 Score=18.11 Aligned_cols=42 Identities=14% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G 114 (133)
++-+..+.+..+.|..||+..|++.. +......++..|.++.
T Consensus 31 eided~i~ellniltelgcdvdfde~-------fsdiaddilesl~eqd 72 (73)
T PHA02780 31 EIDEDEIMELLNILTELGCDVDFDEN-------FSDIADDILESLIEQD 72 (73)
T ss_pred eechHHHHHHHHHHHHhCCCcccccc-------hhHHHHHHHHHHHHcc
Confidence 34455677788899999998886543 4456677788887764
No 197
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=29.18 E-value=1.4e+02 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.201 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCCeEEeceeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYS 124 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~ 124 (133)
.|+.+++.|.+.|+||...+.-.
T Consensus 51 Tv~raY~eLE~eG~i~t~rg~G~ 73 (125)
T COG1725 51 TVQRAYQELEREGIVETKRGKGT 73 (125)
T ss_pred HHHHHHHHHHHCCCEEEecCeeE
Confidence 47778888888888887655433
No 198
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=29.16 E-value=1.4e+02 Score=18.07 Aligned_cols=42 Identities=14% Similarity=0.385 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G 114 (133)
++-+..+.+..+.|..||+..|++.. +......++..|.++.
T Consensus 31 eided~i~ellniltelgcdvdfde~-------fsdiaddilesl~eqd 72 (73)
T PF06076_consen 31 EIDEDDIMELLNILTELGCDVDFDEN-------FSDIADDILESLMEQD 72 (73)
T ss_pred eeCHHHHHHHHHHHHHhCCCcccccc-------hhHHHHHHHHHHHHcc
Confidence 34455677788889999998886543 4556777888887764
No 199
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=28.58 E-value=1e+02 Score=18.84 Aligned_cols=15 Identities=7% Similarity=-0.146 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhcC
Q psy6621 18 KTHSGAECRLAGINS 32 (133)
Q Consensus 18 ~~~~Dil~R~~r~~G 32 (133)
.++.-++++.++..|
T Consensus 6 ~ll~~~Vaqil~~~G 20 (77)
T smart00576 6 ALLRIAVAQILESAG 20 (77)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445555666666666
No 200
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=28.14 E-value=2.1e+02 Score=19.82 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=45.2
Q ss_pred ecccCCCCCHHHHHHHHHcCCCh----------------HHHHHHHHHHHHHHHHhcCcccc-cCCceec--CChhHHHH
Q psy6621 42 QPMGWDAFGLPAENAAHQHGIDP----------------REWTVGNIATMKSQLQGFGCKFN-WESELAT--CDPKYYKW 102 (133)
Q Consensus 42 ~~~G~D~~G~~i~~~a~~~g~~~----------------~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T--~~~~~~~~ 102 (133)
.++-.-.....-..+|.+.|.+- ...+++-.+..++.|+.+||..+ ......+ .-.++.+.
T Consensus 34 rv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~ 113 (132)
T COG1908 34 RVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAET 113 (132)
T ss_pred EeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHH
Confidence 33333333344456666666541 45677788899999999999765 1111111 22466677
Q ss_pred HHHHHHHHHHCCC
Q psy6621 103 TQALFLDLYHAGL 115 (133)
Q Consensus 103 v~~~f~~L~~~G~ 115 (133)
+.++.+++.+-|-
T Consensus 114 ~~efv~~i~~lGp 126 (132)
T COG1908 114 INEFVERIKELGP 126 (132)
T ss_pred HHHHHHHHHHhCC
Confidence 7888888877664
No 201
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=28.03 E-value=1.6e+02 Score=22.99 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceec----------CChhHHHHHHHHHHHHHHCC
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELAT----------CDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T----------~~~~~~~~v~~~f~~L~~~G 114 (133)
.+.+++.+.+.+++. ||.+||+.+..+ ....+..+++++=.+|-+.|
T Consensus 110 r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~ 169 (322)
T cd06548 110 RAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALG 169 (322)
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666 677889876432 12345566666655665543
No 202
>PF00242 DNA_pol_viral_N: DNA polymerase (viral) N-terminal domain; InterPro: IPR000201 This domain is at the N terminus of hepadnavirus P proteins and covers the so-called terminal protein and the spacer region of the protein. This domain is always associated with IPR000477 from INTERPRO and IPR001462 from INTERPRO.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication
Probab=27.77 E-value=88 Score=25.62 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHCCCeEEec--eeeeec
Q psy6621 98 KYYKWTQALFLDLYHAGLVYRKE--VDYSQN 126 (133)
Q Consensus 98 ~~~~~v~~~f~~L~~~G~iy~~~--~~v~~~ 126 (133)
+|...+..-+.+|++.|.+|+++ +.+-||
T Consensus 144 ~H~~~~~~YL~tL~eAGILYkR~s~~~~tF~ 174 (379)
T PF00242_consen 144 NHYFQTRHYLHTLWEAGILYKRESTHSATFK 174 (379)
T ss_pred hHHHHHHHHHHHHHhhcceeeeccceeEeee
Confidence 45667888899999999999874 556665
No 203
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=27.69 E-value=1.6e+02 Score=22.86 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-. .. ..+.+.+.+..|.++|.|--
T Consensus 96 ~~i~~~~~~SL~rL~td~iDl~~lH~~~~-~~--~~~e~~~aL~~l~~~G~ir~ 146 (317)
T TIGR01293 96 KHIIEGLKASLERLQLEYVDIVFANRPDP-NT--PMEETVRAMTYVINQGMAMY 146 (317)
T ss_pred HHHHHHHHHHHHHhCCCcEeEEEeccCCC-CC--CHHHHHHHHHHHHHcCCeeE
Confidence 456788899999999753 41 11100 11 23456788999999999753
No 204
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=27.61 E-value=25 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHHHHHHCCCeEEec------eeeeecCCCCCC
Q psy6621 103 TQALFLDLYHAGLVYRKE------VDYSQNLPTKFY 132 (133)
Q Consensus 103 v~~~f~~L~~~G~iy~~~------~~v~~~~~~~~~ 132 (133)
....+++|.++|+|.... ++..|....+|+
T Consensus 110 s~~~i~~L~e~glI~~~gr~~~~Grp~ly~tT~~Fl 145 (159)
T PF04079_consen 110 SDSVIKTLLERGLIEEVGRKDTPGRPILYGTTDKFL 145 (159)
T ss_dssp -HCHHHHHHHTTSEEEEEE-TTTT--EEEEE-HHHH
T ss_pred hHHHHHHHHHCCCEEecCcCCCCCCCeEeehhHHHH
Confidence 445799999999999766 577777766663
No 205
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=27.37 E-value=99 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
..+.+++..|.+.|+|++..+.-.|
T Consensus 50 ~TVR~Al~~L~~eGli~r~~G~Gtf 74 (241)
T PRK10079 50 HTLRRAIDQLVEKGWVQRRQGVGVL 74 (241)
T ss_pred HHHHHHHHHHHHCCCEEEecCCEEE
Confidence 3688999999999999988766554
No 206
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.29 E-value=99 Score=15.86 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=16.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHH
Q psy6621 53 AENAAHQHGIDPREWTVGNIATMKS 77 (133)
Q Consensus 53 i~~~a~~~g~~~~~~~~~~~~~~~~ 77 (133)
++..|++.|++..++....+..+.+
T Consensus 14 l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 14 LDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4556677788877777766665543
No 207
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=27.20 E-value=1e+02 Score=19.74 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=22.1
Q ss_pred CCCCCC-CCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceee
Q psy6621 1 MYDCTE-EELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVF 41 (133)
Q Consensus 1 ~y~~~p-ng~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~ 41 (133)
+|..+| ||.+ -.|.-..+-.++.++.+| +.|.
T Consensus 1 iYIaGPmtG~~----~~N~~~f~~~a~~L~~~G-----~~vv 33 (92)
T PF14359_consen 1 IYIAGPMTGLP----DYNRPAFNAAAKRLRAKG-----YEVV 33 (92)
T ss_pred CeEeCCcCCCc----chHHHHHHHHHHHHHHCC-----CEEe
Confidence 566666 4544 345556666888889999 9885
No 208
>PRK09875 putative hydrolase; Provisional
Probab=26.95 E-value=1.9e+02 Score=22.63 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHH-----HHHHHHHHHhcCcccccCCceec-
Q psy6621 21 SGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGN-----IATMKSQLQGFGCKFNWESELAT- 94 (133)
Q Consensus 21 ~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~-----~~~~~~~l~~lgi~~d~~~~~~T- 94 (133)
.+..+|..+.-| ..|..=++....|..+...+++.|++|.+++-.. -......+...|++.-++..-..
T Consensus 141 l~Aaa~a~~~TG-----~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~ 215 (292)
T PRK09875 141 FIAAALAHNQTG-----RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNS 215 (292)
T ss_pred HHHHHHHHHHHC-----CcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcc
Confidence 345566666667 5554334444456666556677787765443111 12333444457776644321111
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 95 CDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 95 ~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
..|. +...+.+..|.++|+.-+
T Consensus 216 ~~pd--~~r~~~i~~L~~~Gy~dr 237 (292)
T PRK09875 216 YYPD--EKRIAMLHALRDRGLLNR 237 (292)
T ss_pred cCCH--HHHHHHHHHHHhcCCCCe
Confidence 1121 234677788888886543
No 209
>PLN02587 L-galactose dehydrogenase
Probab=26.94 E-value=2e+02 Score=22.18 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCcc-ccc---CCceecCCh-hHHHHHHHHHHHHHHCCCeE
Q psy6621 68 TVGNIATMKSQLQGFGCK-FNW---ESELATCDP-KYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 68 ~~~~~~~~~~~l~~lgi~-~d~---~~~~~T~~~-~~~~~v~~~f~~L~~~G~iy 117 (133)
.+...+.+.+.|++||.. +|. +.+- ..++ .....+.+.+.+|.++|.|-
T Consensus 94 ~~~i~~~~e~SL~rL~~d~iDl~~lH~~~-~~~~~~~~~~~~~~l~~l~~~Gkir 147 (314)
T PLN02587 94 AERVTKSVDESLARLQLDYVDILHCHDIE-FGSLDQIVNETIPALQKLKESGKVR 147 (314)
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEecCCC-CcchhhhHHHHHHHHHHHHHCCCeE
Confidence 345678889999999975 351 1110 0011 12345678899999999975
No 210
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=26.53 E-value=1.6e+02 Score=23.17 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCcee-cC------------Ch-hHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELA-TC------------DP-KYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~-T~------------~~-~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. +.+-. +. +| .-...+.+.+.+|.++|.|-
T Consensus 108 ~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr 174 (346)
T PRK10625 108 KNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKIR 174 (346)
T ss_pred HHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCeE
Confidence 456788889999999853 51 11110 00 00 01346788889999999974
No 211
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=26.53 E-value=1.7e+02 Score=21.91 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCccc-c---cCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 68 TVGNIATMKSQLQGFGCKF-N---WESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 68 ~~~~~~~~~~~l~~lgi~~-d---~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
.+...+.+.+.|++|+... | .+.+.. .. .....+++.+.+|.++|.|-
T Consensus 92 ~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~-~~-~~~~~~~~~l~~l~~~G~ir 143 (285)
T cd06660 92 PEHIRRAVEESLKRLGTDYIDLYLLHWPDP-DT-PDIEETLRALEELVKEGKIR 143 (285)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEecCCCC-CC-CCHHHHHHHHHHHHHcCCcc
Confidence 4567888889999998743 5 122211 11 12567889999999999864
No 212
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=26.41 E-value=1.7e+02 Score=22.14 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. +.+-.. .....+.+.+.+.+|.++|.|-
T Consensus 73 ~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~-~~~~~~~~~~~l~~l~~~Gkir 124 (267)
T PRK11172 73 DKLIPSLKESLQKLRTDYVDLTLIHWPSPN-DEVSVEEFMQALLEAKKQGLTR 124 (267)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCC-CCCCHHHHHHHHHHHHHCCCCC
Confidence 456788899999999853 51 111100 0011245678899999999974
No 213
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=25.51 E-value=62 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=14.5
Q ss_pred CCcCcchHHHHHHHHHHHHHHHhhcC
Q psy6621 7 EELTCLGGVVVKTHSGAECRLAGINS 32 (133)
Q Consensus 7 ng~lHlGH~~~~~~~Dil~R~~r~~G 32 (133)
||.+|+||+.-. -=+++.++..|
T Consensus 209 ~GklHlGy~~~R---~dl~~llk~~~ 231 (258)
T COG5200 209 NGKLHLGYLLVR---SDLADLLKKFG 231 (258)
T ss_pred ccchhhhHHHHH---HHHHHHHHHhc
Confidence 799999999753 22344444444
No 214
>PLN02998 beta-glucosidase
Probab=25.10 E-value=55 Score=27.65 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=47.1
Q ss_pred ceeeecccCCCCCHHHHHHHHHcCCC----------------hHHHHHHHHHHHHH---HHHhcCcc-----cccCCcee
Q psy6621 38 VRVFQPMGWDAFGLPAENAAHQHGID----------------PREWTVGNIATMKS---QLQGFGCK-----FNWESELA 93 (133)
Q Consensus 38 ~~V~~~~G~D~~G~~i~~~a~~~g~~----------------~~~~~~~~~~~~~~---~l~~lgi~-----~d~~~~~~ 93 (133)
+.--|.||+-...-++|-+..+.|.. +...+...-..+++ .|+.||+. +.|.+-.+
T Consensus 31 FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P 110 (497)
T PLN02998 31 FPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLP 110 (497)
T ss_pred CCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCc
Confidence 33457777777777776544433311 22223334444444 45556663 45766655
Q ss_pred c----CChhHHHHHHHHHHHHHHCCC
Q psy6621 94 T----CDPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 94 T----~~~~~~~~v~~~f~~L~~~G~ 115 (133)
. .+++-.+.-.+++..|.++|.
T Consensus 111 ~G~g~vN~~gl~~Y~~lid~L~~~GI 136 (497)
T PLN02998 111 SGRGPINPKGLQYYNNLIDELITHGI 136 (497)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCC
Confidence 4 355667788899999999997
No 215
>KOG0614|consensus
Probab=25.05 E-value=67 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHCCCeEEeceeee
Q psy6621 97 PKYYKWTQALFLDLYHAGLVYRKEVDYS 124 (133)
Q Consensus 97 ~~~~~~v~~~f~~L~~~G~iy~~~~~v~ 124 (133)
..|...|.+.|..|..+|.||++.+|-+
T Consensus 523 rF~~acv~EAfeYLH~k~iIYRDLKPEN 550 (732)
T KOG0614|consen 523 RFYVACVLEAFEYLHRKGIIYRDLKPEN 550 (732)
T ss_pred hhhHHHHHHHHHHHHhcCceeccCChhh
Confidence 4577889999999999999999887643
No 216
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=24.68 E-value=95 Score=20.13 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 58 stvs~~i~~Le~kg~I~r~~ 77 (109)
T TIGR01889 58 SALVKIIKKLSKKGYLSKER 77 (109)
T ss_pred HHHHHHHHHHHHCCCEeccC
Confidence 45788999999999999743
No 217
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=24.68 E-value=2.3e+02 Score=19.16 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceee
Q psy6621 70 GNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDY 123 (133)
Q Consensus 70 ~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 123 (133)
.....+++.++.|.+.-| .|.-.++...+.+++....++|.|-++-.+.
T Consensus 25 ~~~r~~~n~~e~L~~qed-----k~~l~e~e~q~k~~l~~i~e~G~iird~d~g 73 (123)
T COG4911 25 IQLRKIKNEIELLLVQED-----KYALQEYESQTKKILDEIIEKGIIIRDIDIG 73 (123)
T ss_pred HHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHcCceeeccccc
Confidence 445566777777877665 3434567788889999999999998875443
No 218
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=24.65 E-value=1.2e+02 Score=22.24 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.|..++..|.+.|+|++..+.-.|
T Consensus 41 TVR~Al~~L~~eGli~r~~G~Gtf 64 (230)
T TIGR02018 41 TVNRALRELTDAGLLERRQGVGTF 64 (230)
T ss_pred HHHHHHHHHHHCCCEEEecCCEEE
Confidence 588999999999999988766554
No 219
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.64 E-value=1e+02 Score=19.47 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=11.3
Q ss_pred HcCCChHHHHHHHHHH
Q psy6621 59 QHGIDPREWTVGNIAT 74 (133)
Q Consensus 59 ~~g~~~~~~~~~~~~~ 74 (133)
..|.+|++++++..++
T Consensus 63 A~G~T~eEI~~~v~~r 78 (80)
T PF03698_consen 63 ASGLTAEEIVQEVEER 78 (80)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 3588888887766544
No 220
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=23.81 E-value=1.5e+02 Score=16.72 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+...+.+|.++|+|....
T Consensus 40 ~tv~r~l~~L~~~g~i~~~~ 59 (67)
T cd00092 40 ETVSRTLKELEEEGLISRRG 59 (67)
T ss_pred HHHHHHHHHHHHCCCEEecC
Confidence 46788899999999998765
No 221
>KOG2806|consensus
Probab=23.79 E-value=1.5e+02 Score=24.50 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCc---ccccCCc--eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 66 EWTVGNIATMKSQLQGFGC---KFNWESE--LATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi---~~d~~~~--~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+-...+++.+.+.++..++ .++|+.+ -.+....|..+++++...|.+...-+.
T Consensus 146 ~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~ 203 (432)
T KOG2806|consen 146 MIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSP 203 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccC
Confidence 4556677777777777754 5578877 344556788899999888888765543
No 222
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=23.75 E-value=76 Score=23.73 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceeeecccCC--CCC-HHHHHHHHHcCCChHHHHHHHHHHH
Q psy6621 17 VKTHSGAECRLAGINSIIKGPVRVFQPMGWD--AFG-LPAENAAHQHGIDPREWTVGNIATM 75 (133)
Q Consensus 17 ~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D--~~G-~~i~~~a~~~g~~~~~~~~~~~~~~ 75 (133)
+.+++|+.+.+-+.. +|+.-.|+| |.| .++..++++.|+++.++..+.....
T Consensus 5 ~~~vg~iv~~~p~~~-------~vf~~~~idfCcgG~~~l~ea~~~~~i~~~~~~~~l~~~~ 59 (220)
T PRK10992 5 DQPLGELALSIPRAT-------ALFREYDLDFCCGGKQTLARAAARKNLDIDVIEARLAALQ 59 (220)
T ss_pred cCcHHHHHHhCccHH-------HHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345677776643322 244444444 345 4677778899999887766555443
No 223
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=23.72 E-value=1e+02 Score=19.42 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCeEEecee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~ 122 (133)
..+...+.+|.++|+|.+...+
T Consensus 51 ~~vt~~l~~Le~~glv~r~~~~ 72 (126)
T COG1846 51 STVTRLLKRLEDKGLIERLRDP 72 (126)
T ss_pred HHHHHHHHHHHHCCCeeecCCc
Confidence 4688899999999999986543
No 224
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=23.69 E-value=57 Score=27.22 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=47.6
Q ss_pred eecccCCCCCHHHHHHHHHcCCCh--------------HHHHHHHHHHHH---HHHHhcCcc-----cccCCceec----
Q psy6621 41 FQPMGWDAFGLPAENAAHQHGIDP--------------REWTVGNIATMK---SQLQGFGCK-----FNWESELAT---- 94 (133)
Q Consensus 41 ~~~~G~D~~G~~i~~~a~~~g~~~--------------~~~~~~~~~~~~---~~l~~lgi~-----~d~~~~~~T---- 94 (133)
-|.||.-..+-++|-+..+.|..| ...+...-..++ +.|+.||+. +.|.+-.+.
T Consensus 8 ~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~ 87 (469)
T PRK13511 8 DFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWFTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGE 87 (469)
T ss_pred CCEEEeechHhhhcCCcCCCCCccchhhcccccCCCCCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCC
Confidence 456666666666665443333211 122223333344 455666763 457665554
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621 95 CDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 95 ~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~ 128 (133)
.+++-.+.-.+++..|.++|.-=. -....||.|
T Consensus 88 vN~~gl~~Y~~lid~l~~~GI~P~-VTL~H~dlP 120 (469)
T PRK13511 88 VNPKGVEYYHRLFAECHKRHVEPF-VTLHHFDTP 120 (469)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEE-EEecCCCCc
Confidence 245667788899999999997321 223345544
No 225
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=23.55 E-value=3.1e+02 Score=20.42 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHH---HHHHHHHHCC
Q psy6621 69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQ---ALFLDLYHAG 114 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~---~~f~~L~~~G 114 (133)
+.....+..+|+.+||. .++.|.+|.-+.... +++.+|-.++
T Consensus 147 DqkV~dQQ~TLEkAGVP----GFyvT~nP~eI~lQM~LLdfI~rL~~~~ 191 (196)
T PF07324_consen 147 DQKVADQQSTLEKAGVP----GFYVTTNPQEIKLQMNLLDFILRLSQRE 191 (196)
T ss_pred HHHHHHHHHHHHHCCCC----ceeecCCHHHHHHHHHHHHHHHHHHHcc
Confidence 45677888999999995 468999997666444 4455665544
No 226
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=23.32 E-value=1.1e+02 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=21.3
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEe
Q psy6621 95 CDPKYYKWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 95 ~~~~~~~~v~~~f~~L~~~G~iy~~ 119 (133)
..++..+.+.+.+.+|.++|.|...
T Consensus 9 ~~~~~~~~~~~~v~~ll~~G~I~~~ 33 (210)
T cd03715 9 LPREAREGITPHIQELLEAGILVPC 33 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCeECC
Confidence 4567788999999999999999865
No 227
>PHA02769 hypothetical protein; Provisional
Probab=22.96 E-value=1.9e+02 Score=19.88 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=20.1
Q ss_pred HhhcCCCCCCceeeecccCCCCCHHHHHHH
Q psy6621 28 AGINSIIKGPVRVFQPMGWDAFGLPAENAA 57 (133)
Q Consensus 28 ~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a 57 (133)
++.-| .+|++..|+.||....-.+|
T Consensus 108 ~~~dg-----~evlwtlgfpdhsnaly~ka 132 (154)
T PHA02769 108 LKKDG-----FEVLWTLGFPDHSNALYKKA 132 (154)
T ss_pred HhcCC-----eEEEEEecCCCcchhHHhhh
Confidence 35568 99999999999987765555
No 228
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=22.92 E-value=1.5e+02 Score=16.36 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHCCCeEEe
Q psy6621 101 KWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~ 119 (133)
..+..++..|.+.|++.+.
T Consensus 33 stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 33 STVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCcCeecC
Confidence 4678888999999998874
No 229
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=22.67 E-value=1.3e+02 Score=15.79 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+...+..|.++|+|.+...
T Consensus 29 ~tv~~~l~~L~~~g~i~~~~~ 49 (53)
T smart00420 29 MTIRRDLNKLEEQGLLTRVHG 49 (53)
T ss_pred HHHHHHHHHHHHCCCEEEeec
Confidence 357778899999999987654
No 230
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.64 E-value=67 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=26.8
Q ss_pred HHHHhcCcc-----cccCCceec----CChhHHHHHHHHHHHHHHCCC
Q psy6621 77 SQLQGFGCK-----FNWESELAT----CDPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 77 ~~l~~lgi~-----~d~~~~~~T----~~~~~~~~v~~~f~~L~~~G~ 115 (133)
+.|+.||+. +.|.+-.+. .+++-.+.-.++|..|.++|.
T Consensus 60 ~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI 107 (467)
T TIGR01233 60 ELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHV 107 (467)
T ss_pred HHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCC
Confidence 345556663 457666554 245566788899999999997
No 231
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.52 E-value=2.6e+02 Score=19.01 Aligned_cols=37 Identities=5% Similarity=-0.228 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcC
Q psy6621 19 THSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHG 61 (133)
Q Consensus 19 ~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g 61 (133)
+-+++++++++..| ++|...-+...- ..+..+|++.+
T Consensus 17 ~g~~iv~~~l~~~G-----feVi~lg~~~s~-e~~v~aa~e~~ 53 (132)
T TIGR00640 17 RGAKVIATAYADLG-----FDVDVGPLFQTP-EEIARQAVEAD 53 (132)
T ss_pred HHHHHHHHHHHhCC-----cEEEECCCCCCH-HHHHHHHHHcC
Confidence 34689999999999 999766555333 23444555554
No 232
>PHA01976 helix-turn-helix protein
Probab=22.49 E-value=1.6e+02 Score=16.86 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCccccc
Q psy6621 73 ATMKSQLQGFGCKFNW 88 (133)
Q Consensus 73 ~~~~~~l~~lgi~~d~ 88 (133)
+.+.+..+.||++.||
T Consensus 45 ~~l~~ia~~l~v~~~~ 60 (67)
T PHA01976 45 KTLLRLADALGVTLDW 60 (67)
T ss_pred HHHHHHHHHHCcCHHH
Confidence 3344555556665554
No 233
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=22.40 E-value=1.1e+02 Score=18.03 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHCCCeEEecee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~ 122 (133)
+.+..++..|..+|+|.+-...
T Consensus 29 ~~ve~mL~~l~~kG~I~~~~~~ 50 (69)
T PF09012_consen 29 EAVEAMLEQLIRKGYIRKVDMS 50 (69)
T ss_dssp HHHHHHHHHHHCCTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCcEEEecCC
Confidence 4688899999999999876544
No 234
>PF05619 DUF787: Borrelia burgdorferi protein of unknown function (DUF787); InterPro: IPR008505 This entry consists of several hypothetical proteins of unknown function from Borrelia species. They may be proteinases as the majority contain a propeptide proteinase inhibitor domain which is associated with both serine and metallopeptidases.
Probab=22.39 E-value=1.2e+02 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 96 DPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 96 ~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+..|......+|+++.++|+|..
T Consensus 299 ~naYTaaieC~lk~f~~rGLIv~ 321 (362)
T PF05619_consen 299 DNAYTAAIECLLKEFKDRGLIVS 321 (362)
T ss_pred CchHHHHHHHHHHHHhhcceEEE
Confidence 34688899999999999999864
No 235
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=22.34 E-value=98 Score=18.58 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCcccccCCcee--cCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621 70 GNIATMKSQLQGFGCKFNWESELA--TCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT 129 (133)
Q Consensus 70 ~~~~~~~~~l~~lgi~~d~~~~~~--T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~ 129 (133)
+..+.+.+.|..+|-..-...... -..| .+.|..++-+|.++|.+.+. ..|..|...+
T Consensus 4 ~~ee~Il~~L~~~g~~~a~~ia~~~~L~~~--kk~VN~~LY~L~k~g~v~k~~~~PP~W~l~~ 64 (66)
T PF02295_consen 4 DLEEKILDFLKELGGSTATAIAKALGLSVP--KKEVNRVLYRLEKQGKVCKEGGTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHHTSSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEECSSSTEEEE-H
T ss_pred hHHHHHHHHHHhcCCccHHHHHHHhCcchh--HHHHHHHHHHHHHCCCEeeCCCCCCceEecc
Confidence 445666777777762110000000 0001 35788899999999999874 4677776543
No 236
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=22.19 E-value=1.1e+02 Score=20.66 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 69 ~tvsr~l~~Le~~GlI~R~~ 88 (144)
T PRK11512 69 GALTRMLDRLVCKGWVERLP 88 (144)
T ss_pred HHHHHHHHHHHHCCCEEecc
Confidence 35788999999999999864
No 237
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=22.07 E-value=38 Score=22.50 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=6.7
Q ss_pred CCCCcCcchHHHH
Q psy6621 5 TEEELTCLGGVVV 17 (133)
Q Consensus 5 ~png~lHlGH~~~ 17 (133)
|.=.++|.||+.-
T Consensus 4 GsFdP~H~GH~~~ 16 (157)
T PF01467_consen 4 GSFDPPHNGHLNL 16 (157)
T ss_dssp E--TT--HHHHHH
T ss_pred eEcCcccHHHHHH
Confidence 3345899999864
No 238
>KOG2099|consensus
Probab=22.03 E-value=1.3e+02 Score=26.57 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhcC
Q psy6621 17 VKTHSGAECRLAGINS 32 (133)
Q Consensus 17 ~~~~~Dil~R~~r~~G 32 (133)
.+++.||+.||...++
T Consensus 302 aAtLqDIirRFk~sk~ 317 (843)
T KOG2099|consen 302 AATLQDIIRRFKSSKF 317 (843)
T ss_pred HHHHHHHHHHHhhccc
Confidence 4789999999999876
No 239
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.84 E-value=77 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCCeEE---eceeeeecCCCC
Q psy6621 101 KWTQALFLDLYHAGLVYR---KEVDYSQNLPTK 130 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~---~~~~v~~~~~~~ 130 (133)
..|.++++.|.+-|+|-. |....|||-+++
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~ 62 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQ 62 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChH
Confidence 368899999999999874 567789998763
No 240
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=21.82 E-value=1.7e+02 Score=23.02 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+.....+.+.|++||... |. +.+- ...| .+.+.+.+.+|.++|.|-
T Consensus 114 ~~i~~~~e~SL~rLg~d~iDl~~lH~~~-~~~~--~~e~~~al~~l~~~GkIr 163 (346)
T PRK09912 114 KYLLASLDQSLKRMGLEYVDIFYSHRVD-ENTP--MEETASALAHAVQSGKAL 163 (346)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCCCC-CCCC--HHHHHHHHHHHHHcCCee
Confidence 345778888999999753 51 1110 0111 345678899999999975
No 241
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=21.70 E-value=1.5e+02 Score=23.68 Aligned_cols=93 Identities=16% Similarity=0.057 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---CCC----------h--HHHHHHHHHHHHHHHHhcC
Q psy6621 19 THSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---GID----------P--REWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 19 ~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---g~~----------~--~~~~~~~~~~~~~~l~~lg 83 (133)
-+++++.+-+++.- .+|.++.|--++-+|....+.+. .++ + .++.+..++-++-|++-.+
T Consensus 153 ~La~i~~~~~~~Ga-----kNvN~Vgg~Ptp~lp~Ile~l~~~~~~iPvvwNSnmY~s~E~l~lL~gvVDiyL~DfKYgN 227 (335)
T COG1313 153 DLAEIILELRRHGA-----KNVNFVGGDPTPHLPFILEALRYASENIPVVWNSNMYMSEETLKLLDGVVDIYLPDFKYGN 227 (335)
T ss_pred HHHHHHHHHHHhcC-----cceeecCCCCCCchHHHHHHHHHHhcCCCEEEecCCccCHHHHHHhhccceeeecccccCC
Confidence 35566666555555 99999999999988877666432 222 1 1222223333333322211
Q ss_pred cccccCCceecCChhHHHHHHHHHHHHHHC--CCeEEe
Q psy6621 84 CKFNWESELATCDPKYYKWTQALFLDLYHA--GLVYRK 119 (133)
Q Consensus 84 i~~d~~~~~~T~~~~~~~~v~~~f~~L~~~--G~iy~~ 119 (133)
-.. ....+.-|+|-+.++..|..+.++ |+|.+-
T Consensus 228 dec---a~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRH 262 (335)
T COG1313 228 DEC---AEKYSKVPNYWEVVTRNILEAKEQVGGLIIRH 262 (335)
T ss_pred HHH---HHHhhcCCchHHHHHHHHHHHHHhcCceEEEE
Confidence 111 112244578888999999998888 466653
No 242
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=21.66 E-value=1.5e+02 Score=22.02 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.|..++..|.+.|+|++..+.-.|
T Consensus 45 TvR~Al~~L~~eGli~r~~G~Gtf 68 (240)
T PRK09764 45 TVRQALRQLVEQQILESIQGSGTY 68 (240)
T ss_pred HHHHHHHHHHHCCCEEEecCceeE
Confidence 588999999999999987665444
No 243
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.65 E-value=1.1e+02 Score=17.77 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHCCCe
Q psy6621 100 YKWTQALFLDLYHAGLV 116 (133)
Q Consensus 100 ~~~v~~~f~~L~~~G~i 116 (133)
.+.+..++.+|.++|+|
T Consensus 51 ~~dv~~fl~~L~~~glI 67 (68)
T PF05402_consen 51 EEDVEEFLEQLREKGLI 67 (68)
T ss_dssp HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHCcCc
Confidence 46788889999999986
No 244
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.49 E-value=1.1e+02 Score=17.48 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=19.7
Q ss_pred ccCCCCCHHHHHHHHHcCCChHHHHHH
Q psy6621 44 MGWDAFGLPAENAAHQHGIDPREWTVG 70 (133)
Q Consensus 44 ~G~D~~G~~i~~~a~~~g~~~~~~~~~ 70 (133)
+|.|..-+.+-.+--+.|++|+.++.-
T Consensus 17 tgLd~etL~ici~L~e~GVnPeaLA~v 43 (48)
T PF12554_consen 17 TGLDRETLSICIELCENGVNPEALAAV 43 (48)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHH
Confidence 467776677766667889999887653
No 245
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=21.49 E-value=71 Score=19.51 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCeEEe
Q psy6621 101 KWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~ 119 (133)
..+...+..|.+.|++.+.
T Consensus 35 ~tv~r~l~~L~~~g~l~~~ 53 (91)
T smart00346 35 STAHRLLNTLQELGYVEQD 53 (91)
T ss_pred HHHHHHHHHHHHCCCeeec
Confidence 3566777777888887765
No 246
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=21.39 E-value=1.3e+02 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCeEEeceeeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
.|.+++..|.+.|+|++..+.-.|
T Consensus 47 TvRkAL~~L~~eGli~r~~G~Gtf 70 (236)
T COG2188 47 TVRKALDELVEEGLIVRRQGKGTF 70 (236)
T ss_pred HHHHHHHHHHHCCcEEEEecCeeE
Confidence 588999999999999998766554
No 247
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=21.32 E-value=1.9e+02 Score=16.97 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=7.3
Q ss_pred HHHHHHHhhcC
Q psy6621 22 GAECRLAGINS 32 (133)
Q Consensus 22 Dil~R~~r~~G 32 (133)
|++.|.+...|
T Consensus 1 ~~i~rl~~~~g 11 (66)
T PF07022_consen 1 AVIERLKEALG 11 (66)
T ss_dssp HHHHHHHHHHT
T ss_pred CHHHHHHHHhC
Confidence 56667666666
No 248
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=21.14 E-value=1.6e+02 Score=17.99 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q psy6621 51 LPAENAAHQHGIDPREWTVGN 71 (133)
Q Consensus 51 ~~i~~~a~~~g~~~~~~~~~~ 71 (133)
.+++.+|++.|++++++..+.
T Consensus 23 ~ha~raa~~ygVd~r~il~el 43 (66)
T PF07836_consen 23 LHAERAAERYGVDPRDILVEL 43 (66)
T ss_dssp HHHHHHHHHHT--HHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHH
Confidence 577888899999998775543
No 249
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=20.84 E-value=47 Score=23.17 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=9.3
Q ss_pred CCCcCcchHHHH
Q psy6621 6 EEELTCLGGVVV 17 (133)
Q Consensus 6 png~lHlGH~~~ 17 (133)
.-.++|.||+.-
T Consensus 7 sFdP~H~GHl~l 18 (155)
T TIGR01510 7 SFDPVTNGHLDI 18 (155)
T ss_pred ecCCCcHHHHHH
Confidence 345899999984
No 250
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=20.80 E-value=1.7e+02 Score=21.44 Aligned_cols=39 Identities=18% Similarity=0.058 Sum_probs=25.5
Q ss_pred HHHHHHHhcCccccc---------CCceecCChhHHHHHHHHHHHHHH
Q psy6621 74 TMKSQLQGFGCKFNW---------ESELATCDPKYYKWTQALFLDLYH 112 (133)
Q Consensus 74 ~~~~~l~~lgi~~d~---------~~~~~T~~~~~~~~v~~~f~~L~~ 112 (133)
.+++.|+++||..+. -.++..++++..+.+++++..+++
T Consensus 117 ~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~ 164 (214)
T cd07022 117 DQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYA 164 (214)
T ss_pred CHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356778899997652 223445667777777777666554
No 251
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.73 E-value=1.9e+02 Score=16.82 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCcc---cccCCceecCChhHHHHHHHHHHHHHHCC
Q psy6621 53 AENAAHQHGIDPREWTVGNIATMKSQLQGFGCK---FNWESELATCDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 53 i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~---~d~~~~~~T~~~~~~~~v~~~f~~L~~~G 114 (133)
|+..|++.|+++.+..+... +.|+- .+.....-|.+.+| .+.++...|.++|
T Consensus 8 Ie~~A~~~~~s~~ea~~~~~--------~~~~~~~i~~~Yd~lHt~s~~y--ivedi~~~l~~~g 62 (62)
T PF12668_consen 8 IEEFAKKLNISGEEAYNYFK--------RSGVIDYIIDCYDVLHTQSDEY--IVEDIIEYLKNRG 62 (62)
T ss_pred HHHHHHHHCcCHHHHHHHHH--------HcCcHHHHHHcchHHHHCcHHH--HHHHHHHHHHhcC
Confidence 67788999999876644332 22221 11111123555443 5666666676665
No 252
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=20.48 E-value=1.4e+02 Score=17.98 Aligned_cols=29 Identities=7% Similarity=-0.149 Sum_probs=23.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcC
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINS 32 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G 32 (133)
.++++|.+|.|..... +.|+..++....|
T Consensus 11 d~d~~g~~~~~~~~~~-~~~~~~~~~~~~~ 39 (110)
T cd00586 11 DTDAAGHVNNARYLRY-FEEAREEFLRELG 39 (110)
T ss_pred hcCCCCEEchhHHHHH-HHHHHHHHHHHcC
Confidence 4678888888888776 5688888888777
No 253
>PRK03094 hypothetical protein; Provisional
Probab=20.27 E-value=1.4e+02 Score=18.97 Aligned_cols=15 Identities=13% Similarity=-0.082 Sum_probs=11.7
Q ss_pred HHHHHhhcCCCCCCceeeec
Q psy6621 24 ECRLAGINSIIKGPVRVFQP 43 (133)
Q Consensus 24 l~R~~r~~G~~~~~~~V~~~ 43 (133)
+..+++.+| |+|.-.
T Consensus 13 i~~~L~~~G-----YeVv~l 27 (80)
T PRK03094 13 VQQALKQKG-----YEVVQL 27 (80)
T ss_pred HHHHHHHCC-----CEEEec
Confidence 678889999 988533
No 254
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=20.25 E-value=90 Score=20.03 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 103 TQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 103 v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
+-.++.+|.++|+|.......-=+++.+.|
T Consensus 42 lY~~L~rLe~~GlI~~~~~~~~~~~~rk~y 71 (100)
T TIGR03433 42 LYPALHRLERRGWIAAEWGESENNRRAKFY 71 (100)
T ss_pred HHHHHHHHHHCCCeEEEeeecCCCCCceEE
Confidence 556889999999999853332224555544
No 255
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=20.20 E-value=1.6e+02 Score=21.51 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHHHHHHCCCeEEece
Q psy6621 95 CDPKYYKWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 95 ~~~~~~~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..++-.+.+.+.+.+|.++|.|.....
T Consensus 9 ~~~~~~~~~~~~i~~ll~~g~I~~~~s 35 (213)
T cd01645 9 LTEEKLEALTELVTEQLKEGHIEPSTS 35 (213)
T ss_pred CCHHHHHHHHHHHHHHHHCCceecCCC
Confidence 445667889999999999999998763
Done!