Query psy6621
Match_columns 133
No_of_seqs 150 out of 1173
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:54:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 100.0 3.6E-38 1.2E-42 273.0 14.6 123 3-130 56-190 (917)
2 3u1f_A Methionyl-tRNA syntheta 100.0 7.1E-38 2.4E-42 257.8 13.5 121 3-130 17-137 (542)
3 4arc_A Leucine--tRNA ligase; l 100.0 1.1E-36 3.8E-41 262.3 14.3 123 3-130 61-183 (880)
4 2v0c_A Aminoacyl-tRNA syntheta 100.0 4E-36 1.4E-40 259.2 15.7 123 3-130 41-163 (878)
5 1gax_A Valrs, valyl-tRNA synth 100.0 3.8E-36 1.3E-40 258.9 13.6 123 3-130 42-180 (862)
6 1wz2_A Leucyl-tRNA synthetase; 100.0 3.9E-36 1.3E-40 261.5 12.8 123 3-130 42-190 (967)
7 1ile_A Ilers, isoleucyl-tRNA s 100.0 2E-36 6.9E-41 259.7 10.5 123 3-130 46-185 (821)
8 1rqg_A Methionyl-tRNA syntheta 100.0 2.4E-35 8.2E-40 250.3 14.9 121 3-130 10-131 (722)
9 1wkb_A Leucyl-tRNA synthetase; 100.0 3E-34 1E-38 245.9 13.9 123 3-130 42-190 (810)
10 2x1l_A Methionyl-tRNA syntheta 100.0 2.8E-33 9.7E-38 229.8 14.9 121 3-130 20-140 (524)
11 2csx_A Methionyl-tRNA syntheta 100.0 2E-33 6.8E-38 229.5 11.8 121 3-130 13-133 (497)
12 2d5b_A Methionyl-tRNA syntheta 100.0 1E-32 3.5E-37 225.2 13.6 121 3-130 11-131 (500)
13 3h99_A Methionyl-tRNA syntheta 100.0 2.5E-32 8.6E-37 226.0 14.7 121 3-130 26-146 (560)
14 3kfl_A Methionyl-tRNA syntheta 100.0 4.6E-32 1.6E-36 224.8 12.6 121 3-130 34-154 (564)
15 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.4E-31 5E-36 220.5 14.9 121 3-130 33-153 (536)
16 3tqo_A Cysteinyl-tRNA syntheta 100.0 2.7E-31 9.4E-36 215.6 12.7 121 1-129 28-151 (462)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 6.5E-31 2.2E-35 214.8 9.6 121 1-129 45-177 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.3E-29 8E-34 202.0 12.1 120 1-129 42-168 (414)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 5.1E-28 1.7E-32 196.6 11.7 120 1-129 25-148 (461)
20 2zue_A Arginyl-tRNA synthetase 99.8 2.7E-20 9.2E-25 156.1 9.1 119 3-128 127-309 (629)
21 1iq0_A Arginyl-tRNA synthetase 99.8 6.4E-20 2.2E-24 152.9 10.1 117 4-128 112-279 (592)
22 1irx_A Lysyl-tRNA synthetase; 99.8 3.4E-20 1.2E-24 152.5 0.9 103 3-114 27-147 (523)
23 1f7u_A Arginyl-tRNA synthetase 99.8 1.2E-18 4.1E-23 145.6 9.9 117 3-128 151-327 (607)
24 3fnr_A Arginyl-tRNA synthetase 99.7 8.1E-16 2.8E-20 125.0 11.5 116 3-128 38-200 (464)
25 1nzj_A Hypothetical protein YA 99.4 5.2E-13 1.8E-17 103.1 5.9 91 2-118 10-100 (298)
26 3aii_A Glutamyl-tRNA synthetas 99.4 7.7E-13 2.6E-17 109.2 6.4 90 2-118 101-190 (553)
27 1qtq_A GLNRS, protein (glutami 99.3 2.2E-12 7.5E-17 106.5 8.0 91 2-118 31-121 (553)
28 3al0_C Glutamyl-tRNA(Gln) amid 99.3 3.6E-12 1.2E-16 106.3 8.0 92 2-118 134-232 (592)
29 2o5r_A Glutamyl-tRNA synthetas 99.3 8.8E-12 3E-16 101.7 8.5 94 2-118 18-116 (481)
30 2hz7_A Glutaminyl-tRNA synthet 99.3 6E-12 2E-16 108.0 7.3 91 2-118 71-161 (851)
31 4g6z_A Glutamate-tRNA ligase; 99.3 1.8E-11 6.1E-16 100.0 8.9 91 2-118 30-120 (490)
32 2cfo_A Glutamyl-tRNA synthetas 99.3 4.7E-12 1.6E-16 103.6 5.4 91 2-118 6-96 (492)
33 4gri_A Glutamate--tRNA ligase; 99.2 1.5E-11 5.1E-16 101.0 6.3 94 2-118 29-127 (512)
34 3afh_A Glutamyl-tRNA synthetas 99.2 2.6E-11 8.9E-16 99.1 6.5 92 2-118 30-128 (488)
35 1j09_A Glutamyl-tRNA synthetas 99.2 2.2E-11 7.5E-16 99.1 4.8 92 2-118 6-104 (468)
36 2ja2_A Glutamyl-tRNA synthetas 99.1 7.2E-11 2.5E-15 96.6 6.2 92 2-118 11-109 (498)
37 3tzl_A Tryptophanyl-tRNA synth 95.6 0.016 5.3E-07 44.8 5.0 65 5-87 11-75 (322)
38 2g36_A Tryptophanyl-tRNA synth 95.5 0.032 1.1E-06 43.4 6.5 67 5-87 20-86 (340)
39 2cyb_A Tyrosyl-tRNA synthetase 95.5 0.056 1.9E-06 41.5 7.7 66 5-87 40-105 (323)
40 3a04_A Tryptophanyl-tRNA synth 95.1 0.046 1.6E-06 43.0 6.3 67 5-87 78-144 (372)
41 2el7_A Tryptophanyl-tRNA synth 95.0 0.077 2.6E-06 41.2 7.3 68 5-87 9-77 (337)
42 1i6k_A TRPRS, tryptophanyl-tRN 94.9 0.043 1.5E-06 42.4 5.5 65 5-87 9-73 (328)
43 2dlc_X Tyrosyl-tRNA synthetase 94.8 0.042 1.4E-06 43.5 5.4 32 5-45 47-78 (394)
44 2zp1_A Tyrosyl-tRNA synthetase 94.8 0.053 1.8E-06 41.6 5.8 64 5-85 36-99 (314)
45 1n3l_A Tyrosyl-tRNA synthetase 94.8 0.088 3E-06 41.3 7.1 31 6-45 44-74 (372)
46 3jxe_A Tryptophanyl-tRNA synth 94.7 0.097 3.3E-06 41.5 7.1 87 5-106 81-168 (392)
47 2cya_A Tyrosyl-tRNA synthetase 94.6 0.038 1.3E-06 43.3 4.7 68 5-87 43-110 (364)
48 3hzr_A Tryptophanyl-tRNA synth 94.3 0.067 2.3E-06 42.4 5.5 67 5-87 90-156 (386)
49 3sz3_A Tryptophanyl-tRNA synth 94.2 0.071 2.4E-06 41.5 5.4 65 5-87 14-78 (341)
50 3prh_A Tryptophanyl-tRNA synth 94.1 0.081 2.8E-06 41.9 5.5 65 5-87 43-107 (388)
51 2yy5_A Tryptophanyl-tRNA synth 93.7 0.078 2.7E-06 41.3 4.8 65 5-87 12-76 (348)
52 3foc_A Tryptophanyl-tRNA synth 93.7 0.27 9.1E-06 39.7 7.9 68 5-87 99-167 (451)
53 3vgj_A Tyrosyl-tRNA synthetase 93.5 0.088 3E-06 41.4 4.7 68 5-87 64-132 (373)
54 2cyc_A Tyrosyl-tRNA synthetase 93.4 0.076 2.6E-06 41.8 4.3 70 5-87 41-114 (375)
55 3hv0_A Tryptophanyl-tRNA synth 93.3 0.3 1E-05 38.6 7.6 67 5-87 82-150 (393)
56 3i05_A Tryptophanyl-tRNA synth 93.3 0.25 8.4E-06 39.2 7.0 67 5-87 86-153 (395)
57 1yi8_B Tryptophanyl-tRNA synth 93.1 0.13 4.5E-06 40.0 5.2 66 5-87 30-95 (351)
58 3p0j_A Tyrosyl-tRNA synthetase 93.0 0.33 1.1E-05 41.2 7.7 71 1-85 386-457 (690)
59 3n9i_A Tryptophanyl-tRNA synth 92.8 0.15 5.2E-06 39.7 5.1 64 5-87 23-87 (346)
60 2j5b_A Tyrosyl-tRNA synthetase 92.3 0.18 6.1E-06 39.2 4.9 69 5-87 48-116 (348)
61 1r6t_A Tryptophanyl-tRNA synth 92.2 0.12 4.1E-06 42.0 3.9 67 5-87 163-230 (477)
62 2ip1_A Tryptophanyl-tRNA synth 92.1 0.53 1.8E-05 37.7 7.5 68 5-87 110-178 (432)
63 3p0j_A Tyrosyl-tRNA synthetase 92.1 0.21 7.2E-06 42.3 5.4 68 5-87 48-116 (690)
64 1y42_X Tyrosyl-tRNA synthetase 91.6 0.12 4.1E-06 40.9 3.2 68 5-83 72-143 (392)
65 1jil_A Tyrrs, tyrosyl-tRNA syn 91.4 0.13 4.6E-06 41.0 3.3 68 5-82 40-110 (420)
66 3tze_A Tryptophanyl-tRNA synth 88.8 1 3.5E-05 35.8 6.4 67 5-87 109-176 (406)
67 2yxn_A Tyrosyl-tRNA synthetase 88.0 0.44 1.5E-05 36.6 3.7 32 5-45 41-73 (322)
68 1h3f_A Tyrosyl-tRNA synthetase 86.9 1.3 4.3E-05 35.5 5.9 33 5-46 45-78 (432)
69 1r6u_A Tryptophanyl-tRNA synth 86.7 0.47 1.6E-05 38.1 3.3 66 5-86 116-182 (437)
70 2ts1_A Tyrosyl-tRNA synthetase 86.6 0.52 1.8E-05 37.6 3.5 68 5-82 38-108 (419)
71 2pid_A Tyrosyl-tRNA synthetase 85.9 0.61 2.1E-05 36.3 3.5 33 5-46 54-87 (356)
72 2jan_A Tyrosyl-tRNA synthetase 85.3 0.66 2.3E-05 37.2 3.5 32 5-45 40-72 (432)
73 2k53_A A3DK08 protein; NESG, C 83.5 0.7 2.4E-05 28.0 2.3 51 18-75 7-63 (76)
74 2k5e_A Uncharacterized protein 78.1 0.74 2.5E-05 27.7 1.0 50 19-75 10-65 (73)
75 3sim_A Protein, family 18 chit 59.8 16 0.00054 26.9 5.1 52 65-116 100-154 (275)
76 3cz8_A Putative sporulation-sp 57.9 18 0.00061 27.0 5.2 50 68-117 96-148 (319)
77 3dvk_B Voltage-dependent R-typ 51.6 18 0.00061 16.8 2.9 19 11-29 2-21 (23)
78 3g5g_A Regulatory protein; tra 49.8 33 0.0011 20.9 4.8 68 2-87 11-85 (99)
79 2xvc_A ESCRT-III, SSO0910; cel 49.0 16 0.00055 20.9 2.8 18 101-118 40-57 (59)
80 2fi0_A Conserved domain protei 47.1 5.5 0.00019 24.0 0.6 43 18-67 13-66 (81)
81 1p6r_A Penicillinase repressor 41.2 37 0.0013 19.6 3.8 27 101-127 42-70 (82)
82 2heo_A Z-DNA binding protein 1 40.5 24 0.00084 20.0 2.8 25 101-126 40-64 (67)
83 3o0k_A Aldo/keto reductase; ss 40.5 51 0.0017 24.2 5.2 48 69-118 107-158 (283)
84 3bxw_B Chitinase domain-contai 38.3 52 0.0018 25.5 5.2 51 68-118 170-224 (393)
85 3tqn_A Transcriptional regulat 37.4 58 0.002 20.3 4.5 21 102-122 49-69 (113)
86 3neu_A LIN1836 protein; struct 36.8 59 0.002 20.7 4.5 21 102-122 53-73 (125)
87 4ham_A LMO2241 protein; struct 34.7 60 0.0021 20.8 4.4 22 102-123 54-75 (134)
88 2wzm_A Aldo-keto reductase; ox 34.2 64 0.0022 23.6 4.9 48 69-118 92-143 (283)
89 3b3d_A YTBE protein, putative 34.0 70 0.0024 23.8 5.1 46 69-118 126-175 (314)
90 1qbj_A Protein (double-strande 33.6 41 0.0014 20.1 3.1 26 101-126 42-68 (81)
91 1qgp_A Protein (double strande 32.4 41 0.0014 19.8 2.9 26 101-126 46-72 (77)
92 2pi6_A Chitinase-3-like protei 32.4 42 0.0014 25.4 3.7 48 68-115 95-145 (361)
93 1nar_A Narbonin; plant SEED pr 32.0 92 0.0031 22.8 5.5 47 67-115 101-156 (290)
94 1vp5_A 2,5-diketo-D-gluconic a 31.9 63 0.0022 23.9 4.6 47 69-118 100-148 (298)
95 1pz1_A GSP69, general stress p 31.9 84 0.0029 23.4 5.3 46 69-117 101-150 (333)
96 3ln3_A Dihydrodiol dehydrogena 31.5 62 0.0021 24.0 4.5 49 69-117 94-162 (324)
97 3n2t_A Putative oxidoreductase 31.4 71 0.0024 24.0 4.9 47 69-118 122-172 (348)
98 1ur3_M Hypothetical oxidoreduc 31.1 92 0.0032 23.1 5.4 46 69-117 125-174 (319)
99 1wj5_A Hypothetical protein (r 31.1 53 0.0018 21.4 3.4 20 101-120 78-97 (120)
100 3f7j_A YVGN protein; aldo-keto 30.5 69 0.0024 23.3 4.5 46 69-118 88-137 (276)
101 2ek5_A Predicted transcription 30.3 78 0.0027 20.3 4.3 21 102-122 44-64 (129)
102 1i96_V Translation initiation 29.8 99 0.0034 18.9 4.7 47 38-84 3-66 (89)
103 3eau_A Voltage-gated potassium 29.7 64 0.0022 23.9 4.3 47 69-118 100-150 (327)
104 3up8_A Putative 2,5-diketo-D-g 29.7 70 0.0024 23.7 4.5 47 69-118 104-154 (298)
105 3b3e_A YVGN protein; aldo-keto 29.6 71 0.0024 23.8 4.5 46 69-118 122-171 (310)
106 1us0_A Aldose reductase; oxido 29.5 87 0.003 23.1 5.0 49 69-117 87-155 (316)
107 1req_B Methylmalonyl-COA mutas 29.5 2.2E+02 0.0077 23.8 7.8 63 21-115 527-589 (637)
108 2k4b_A Transcriptional regulat 29.3 53 0.0018 20.3 3.2 19 101-119 68-86 (99)
109 3n6q_A YGHZ aldo-keto reductas 28.9 79 0.0027 23.6 4.7 47 69-118 114-164 (346)
110 1gve_A Aflatoxin B1 aldehyde r 28.9 90 0.0031 23.1 5.0 47 69-118 85-135 (327)
111 3dve_B Voltage-dependent N-typ 28.4 32 0.0011 15.9 1.5 18 11-28 1-19 (23)
112 3v0s_A Perakine reductase; AKR 28.2 88 0.003 23.4 4.8 47 69-118 102-152 (337)
113 1vbj_A Prostaglandin F synthas 27.9 1.1E+02 0.0036 22.4 5.1 46 68-117 90-139 (281)
114 4ay1_A Chitinase-3-like protei 27.6 49 0.0017 25.0 3.4 43 69-111 97-142 (365)
115 4f40_A Prostaglandin F2-alpha 27.5 83 0.0028 23.0 4.5 50 69-118 92-149 (288)
116 1qwk_A Aldose reductase, aldo- 27.1 66 0.0023 23.8 3.9 49 69-117 90-148 (317)
117 1hw6_A 2,5-diketo-D-gluconic a 26.9 64 0.0022 23.5 3.8 48 69-118 84-135 (278)
118 1sd4_A Penicillinase repressor 26.9 64 0.0022 19.9 3.4 20 101-120 43-62 (126)
119 2k9i_A Plasmid PRN1, complete 26.5 77 0.0026 16.6 4.1 27 52-78 23-49 (55)
120 1pyf_A IOLS protein; beta-alph 25.9 1.2E+02 0.0042 22.2 5.2 46 69-117 101-150 (312)
121 3fnd_A Chitinase; TIM-barrel, 25.9 88 0.003 23.1 4.4 48 67-116 89-142 (312)
122 2bp1_A Aflatoxin B1 aldehyde r 25.7 1E+02 0.0036 23.2 4.9 47 69-118 118-168 (360)
123 3edp_A LIN2111 protein; APC883 25.6 96 0.0033 22.0 4.5 25 101-125 48-72 (236)
124 1tbx_A ORF F-93, hypothetical 25.6 70 0.0024 18.9 3.3 19 101-119 41-59 (99)
125 3o3r_A Aldo-keto reductase fam 25.5 92 0.0031 23.0 4.5 50 69-118 87-156 (316)
126 1lqa_A TAS protein; TIM barrel 25.4 1E+02 0.0035 22.9 4.7 50 69-118 108-175 (346)
127 3h7r_A Aldo-keto reductase; st 24.6 95 0.0032 23.2 4.4 49 69-117 106-169 (331)
128 2ay0_A Bifunctional PUTA prote 24.6 97 0.0033 17.1 3.6 30 52-81 17-46 (58)
129 3oop_A LIN2960 protein; protei 24.6 75 0.0026 19.9 3.4 20 101-120 66-85 (143)
130 3f8b_A Transcriptional regulat 24.5 44 0.0015 21.1 2.2 32 101-132 48-79 (116)
131 2lnb_A Z-DNA-binding protein 1 24.4 78 0.0027 19.2 3.1 27 101-128 49-75 (80)
132 2bgs_A Aldose reductase; holoe 24.2 99 0.0034 23.4 4.5 50 69-118 121-186 (344)
133 3erp_A Putative oxidoreductase 24.1 89 0.003 23.5 4.2 47 69-118 135-185 (353)
134 2hzt_A Putative HTH-type trans 24.0 58 0.002 19.9 2.7 21 101-121 43-63 (107)
135 3h7u_A Aldo-keto reductase; st 23.9 1E+02 0.0035 23.1 4.5 49 69-117 110-173 (335)
136 1zgd_A Chalcone reductase; pol 23.8 92 0.0031 23.0 4.2 49 69-117 96-161 (312)
137 4exb_A Putative uncharacterize 23.7 1E+02 0.0036 22.6 4.4 48 69-118 133-186 (292)
138 3nrw_A Phage integrase/site-sp 23.6 84 0.0029 19.1 3.4 52 60-118 46-98 (117)
139 1mzr_A 2,5-diketo-D-gluconate 23.4 1E+02 0.0034 22.8 4.3 48 69-118 104-155 (296)
140 3eco_A MEPR; mutlidrug efflux 23.4 79 0.0027 19.6 3.3 20 101-120 62-81 (139)
141 3hsr_A HTH-type transcriptiona 23.3 82 0.0028 19.7 3.4 20 101-120 65-84 (140)
142 3bhp_A UPF0291 protein YNZC; N 23.0 1.1E+02 0.0039 17.4 4.3 26 56-81 16-47 (60)
143 1ynp_A Oxidoreductase, AKR11C1 22.8 95 0.0033 23.0 4.1 47 69-118 115-165 (317)
144 2kel_A SVTR protein, uncharact 22.7 1.1E+02 0.0037 16.9 4.4 25 53-77 28-52 (56)
145 2dk5_A DNA-directed RNA polyme 22.6 86 0.003 19.0 3.2 18 101-118 51-68 (91)
146 3fsi_A RT, reverse transcripta 22.6 1.1E+02 0.0036 21.8 4.2 28 94-121 42-69 (255)
147 3buv_A 3-OXO-5-beta-steroid 4- 22.6 1.2E+02 0.0041 22.5 4.7 50 69-118 96-165 (326)
148 3lut_A Voltage-gated potassium 22.4 97 0.0033 23.4 4.2 47 69-118 134-184 (367)
149 2vn2_A DNAD, chromosome replic 22.4 69 0.0024 20.4 2.9 21 101-121 66-86 (128)
150 3e6m_A MARR family transcripti 22.2 82 0.0028 20.3 3.3 20 101-120 82-101 (161)
151 1s1p_A Aldo-keto reductase fam 22.2 1.2E+02 0.004 22.6 4.5 50 69-118 93-162 (331)
152 3f8m_A GNTR-family protein tra 22.2 1.1E+02 0.0038 21.8 4.3 24 101-125 51-74 (248)
153 3bro_A Transcriptional regulat 22.1 84 0.0029 19.4 3.3 20 101-120 65-84 (141)
154 2gpe_A Bifunctional protein PU 22.0 98 0.0033 16.2 4.7 30 52-81 17-46 (52)
155 3f3x_A Transcriptional regulat 21.8 85 0.0029 19.6 3.3 20 101-120 65-84 (144)
156 3s2w_A Transcriptional regulat 21.6 87 0.003 20.1 3.3 20 101-120 79-98 (159)
157 2fsw_A PG_0823 protein; alpha- 21.4 59 0.002 19.8 2.3 21 101-121 54-74 (107)
158 4b8x_A SCO5413, possible MARR- 21.3 90 0.0031 20.0 3.3 20 101-120 66-85 (147)
159 4aik_A Transcriptional regulat 21.1 88 0.003 20.3 3.3 20 101-120 61-80 (151)
160 1hw1_A FADR, fatty acid metabo 21.0 1.5E+02 0.0053 20.4 4.8 21 102-122 47-67 (239)
161 1lva_A Selenocysteine-specific 20.8 74 0.0025 23.0 3.0 62 66-127 137-198 (258)
162 3deu_A Transcriptional regulat 20.6 89 0.0031 20.4 3.3 20 101-120 83-102 (166)
163 4gie_A Prostaglandin F synthas 20.5 1.5E+02 0.0052 21.5 4.8 45 69-117 95-143 (290)
164 1baz_A ARC repressor; transcri 20.4 1.2E+02 0.004 16.4 3.8 27 52-78 21-47 (53)
165 2fbh_A Transcriptional regulat 20.4 1.1E+02 0.0037 19.0 3.5 20 101-120 67-86 (146)
166 3by6_A Predicted transcription 20.2 1.1E+02 0.0038 19.4 3.6 23 102-124 51-73 (126)
167 3fy1_A Amcase, TSA1902, acidic 20.2 74 0.0025 24.5 3.1 47 68-114 95-149 (395)
168 1goi_A Chitinase B; chitin deg 20.0 96 0.0033 24.7 3.8 47 67-113 119-168 (499)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=3.6e-38 Score=272.95 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=119.6
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCCh------------HHHHHH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDP------------REWTVG 70 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~------------~~~~~~ 70 (133)
+|||||.|||||+++++++|+++||+||+| ++|.+++||||||+|||.+|++.|++| ++|+.+
T Consensus 56 pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G-----~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 56 PPYANGNLHMGHALNKILKDFIVRYKTMQG-----FYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----CBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----CCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 999999999999999999999999876 689999
Q ss_pred HHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 71 NIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 71 ~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+++.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~ 190 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSE 190 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999986
No 2
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=7.1e-38 Score=257.78 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=117.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.||||||++++++|+++||+||+| ++|.+++||||||+||+.+|+++|++|+++++++.+.+++++++|
T Consensus 17 ~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G-----~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 17 IYYVNAAPHIGHVYSTLITDVIGRYHRVKG-----ERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHTT-----CCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhcC-----CCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++|| +++|++|.|.+.++++|.+|+++|+||++.++|+|||.++
T Consensus 92 gi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 137 (542)
T 3u1f_A 92 DYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDE 137 (542)
T ss_dssp TCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCc
Confidence 999987 5689999999999999999999999999999999999875
No 3
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.1e-36 Score=262.28 Aligned_cols=123 Identities=40% Similarity=0.692 Sum_probs=114.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+||+| ++|.+++|||+||+|||.+|++.|++|.+|+.++++.|+++|++|
T Consensus 61 ~PypnG~lHiGHa~~~~~~DvlaRy~rm~G-----~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 61 LPYPSGRLHMGHVRNYTIGDVIARYQRMLG-----KNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHTT-----CEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~ 183 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ 183 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcC
Confidence 999999999999999999999999999999999999999999999876
No 4
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=4e-36 Score=259.23 Aligned_cols=123 Identities=35% Similarity=0.689 Sum_probs=121.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+||+| ++|.+++||||||+||+.+|++.|++|+++++++++.|++++++|
T Consensus 41 ~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G-----~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 41 FPYPSGDLHMGHLKNYTMGDVLARFRRMQG-----YEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp CCCCSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhcC-----CceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~ 163 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ 163 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCC
Confidence 999999999999999999999999999999999999999999999986
No 5
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3.8e-36 Score=258.92 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=116.9
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHH----cCCCh------------HH
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQ----HGIDP------------RE 66 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~----~g~~~------------~~ 66 (133)
+|||||.|||||+++++++|+++||+||+| ++|++++||||||+|+|.++++ .|+++ ++
T Consensus 42 pPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G-----~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 42 PPNVTGSLHMGHALDNSLQDALIRYKRMRG-----FEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp CCBSSSCCCHHHHHHHHHHHHHHHHHHTTT-----SEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhCC-----CccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 689999999999999999999999999999 9999999999999999999874 46664 47
Q ss_pred HHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 67 WTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|++++.+.|++++++||+++||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~ 180 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE 180 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcC
Confidence 8999999999999999999999999999999999999999999999999999999999999985
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-36 Score=261.50 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=116.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc---------------C------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------G------ 61 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------g------ 61 (133)
+|||||.|||||+++++++|+++||+||+| ++|++++||||||+|||.+|++. |
T Consensus 42 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G-----~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 42 FPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp CCBCSSCCBHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHcCC-----CccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 689999999999999999999999999999 99999999999999999887641 3
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCcccccCCceecCC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 62 ---IDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 62 ---~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
.+|++|++++.+.+++++++||+++||++++.|++ |.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~ 190 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCC
Confidence 35789999999999999999999999999999999 9999999999999999999999999999999986
No 7
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2e-36 Score=259.71 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=117.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCCh----------------H
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GIDP----------------R 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~~----------------~ 65 (133)
+|||||.|||||+++++++|+++||+||+| ++|.+++|||+||+|||.+|++. |+++ +
T Consensus 46 pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~ 120 (821)
T 1ile_A 46 PPTANGLPHVGHAQARSYKDLFPRYKTMRG-----YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACR 120 (821)
T ss_dssp CCCTTSCCCTTHHHHHHHHHHHHHHHHHTT-----CBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHH
T ss_pred CCCCCCCCchhhhHhHHHHHHHHHHHHhcC-----CcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHH
Confidence 589999999999999999999999999999 99999999999999999999985 8763 5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
++++++.+.|++++++||++.||++++.|++|.|.++++++|.+|+++|+||++.++|+|||.++
T Consensus 121 ~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 185 (821)
T 1ile_A 121 ESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG 185 (821)
T ss_dssp HHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCC
Confidence 78889999999999999999999999999999999999999999999999999999999999986
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2.4e-35 Score=250.30 Aligned_cols=121 Identities=21% Similarity=0.160 Sum_probs=117.3
Q ss_pred CCCCCCcCcchHHHH-HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 3 DCTEEELTCLGGVVV-KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 3 ~~~png~lHlGH~~~-~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
+|||||.|||||+++ ++++|+++||+||+| ++|.+++|||+||+||+.+|+++|++|+++++++.+.|++++++
T Consensus 10 ~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G-----~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 10 LPYANGPIHAGHLAGAYLPADIFVRYLRLKG-----EDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp CCBTTSCCBHHHHHHHTHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhchhhccHHHHHHHHHHHHhcC-----CceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999998 999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
|||++|| +++|++|.|.+.++++|.+|+++|+||++.++++|||.++
T Consensus 85 lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~ 131 (722)
T 1rqg_A 85 AKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK 131 (722)
T ss_dssp HTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTT
T ss_pred hCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence 9998875 6789999999999999999999999999999999999986
No 9
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-34 Score=245.85 Aligned_cols=123 Identities=18% Similarity=0.207 Sum_probs=116.4
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc----------------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH---------------------- 60 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~---------------------- 60 (133)
+|||||+|||||+++++++|+++||+||+| ++|.+++|||+||+||+..|++.
T Consensus 42 ~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G-----~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 42 FPYLSGHLHVGHARTYTIPDVIARFKRMQG-----YNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred CCCCCCCCccccchhHHHHHHHHHHHHcCC-----CccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 689999999999999999999999999999 99999999999999999877531
Q ss_pred --CCChHHHHHHHHHHHHHHHHhcCcccccCCceecCC--hhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 61 --GIDPREWTVGNIATMKSQLQGFGCKFNWESELATCD--PKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 61 --g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
+..++++++++.+.|++++++||+++||++++.|++ |.|.++++++|.+|+++|+||++.++++|||.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 190 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence 246789999999999999999999999999999999 9999999999999999999999999999999986
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=2.8e-33 Score=229.82 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=116.3
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||+|||||+++++++|+++||+|++| ++|.+++|||+||+||+.+|++.|++|.++++++.+.+++++++|
T Consensus 20 ~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 20 IAYPNGVPHIGHAYEYIATDAIARFKRLDG-----YDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp CBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHhcC-----CceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++| .+++|+++.|.+.++++|.+|+++|+||+++++|+|||.++
T Consensus 95 gi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~ 140 (524)
T 2x1l_A 95 NISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDE 140 (524)
T ss_dssp TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccC
Confidence 99876 66789999999999999999999999999999999999874
No 11
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2e-33 Score=229.50 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=108.0
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||.|||||+++++++|+++||+|++| ++|.+++|||+||+||+.+|+++|++|.++++++.+.|++++++|
T Consensus 13 ~py~ng~lHiGH~~~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 87 (497)
T 2csx_A 13 IYYVNDVPHLGHAYTTIAADTIARYYRLRD-----YDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFL 87 (497)
T ss_dssp EEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHhcC-----CceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++| .+++|++|.|.+.++++|++|+++|+||++.+.++|||.++
T Consensus 88 gi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~ 133 (497)
T 2csx_A 88 KIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCE 133 (497)
T ss_dssp TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------
T ss_pred CCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccC
Confidence 99766 56789999999999999999999999999999999999874
No 12
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1e-32 Score=225.15 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=115.8
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||++||||+++++++|+++||+|++| ++|.+++|+|+||+||+.+|++.|++|.++++++.+.+++++++|
T Consensus 11 ~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDG-----YRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp CEETTSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHcCC-----CceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++| .+++|+++.|.+.++++|++|+++|+||++++.++|||.++
T Consensus 86 gi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~ 131 (500)
T 2d5b_A 86 GIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCE 131 (500)
T ss_dssp TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcC
Confidence 99877 56789999999999999999999999999999999999876
No 13
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=2.5e-32 Score=225.96 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=116.6
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||+|||||+|+++++|+++||+|++| ++|.+++|+|+||+||+.+|++.|++|+++++++.+.++++|++|
T Consensus 26 ~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 26 SPYANGSIHLGHMLEHIQADVWVRYQRMRG-----HEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHcC-----CeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++| .+++|+++.|.+.++++|.+|.++|+||++++.++||+.++
T Consensus 101 gi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~ 146 (560)
T 3h99_A 101 NISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG 146 (560)
T ss_dssp TCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccC
Confidence 99766 67889999999999999999999999999999999999875
No 14
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.97 E-value=4.6e-32 Score=224.80 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=116.7
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||+|||||+|+++++|+++||+|++| ++|.+++|+|+||+||+.+|++.|++|+++++++.+.+++++++|
T Consensus 34 ~py~ng~lHiGH~r~~v~~D~laR~~r~~G-----~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~l 108 (564)
T 3kfl_A 34 IYYVNASPHIGHVYSTLIVDVLGRYHRVKG-----EEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEM 108 (564)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcC-----CcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++| .+++|+++.|.+.++++|++|.++|+||++...++||+.++
T Consensus 109 gi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~ 154 (564)
T 3kfl_A 109 NYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE 154 (564)
T ss_dssp TCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred CCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence 99988 46789999999999999999999999999999999999875
No 15
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.97 E-value=1.4e-31 Score=220.46 Aligned_cols=121 Identities=17% Similarity=0.254 Sum_probs=116.4
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 82 (133)
+|||||+|||||+|+++++|+++||+|++| ++|.+++|+||||+||+.+|++.|++|+++++++.+.+++++++|
T Consensus 33 ~pypng~lHiGH~r~~v~~D~laR~lr~~G-----~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 33 IAYPNGKPHIGHAYELIATDAMARFQRLNG-----MDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp CBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcchhHHHHHHHHHHHHHHhcC-----CcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCCC
Q psy6621 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTK 130 (133)
Q Consensus 83 gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~ 130 (133)
||++| .+++|+++.|.+.++++|.+|.++|+||++.++++||+.++
T Consensus 108 gi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~ 153 (536)
T 4dlp_A 108 NSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDE 153 (536)
T ss_dssp TCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcC
Confidence 99887 56789999999999999999999999999999999999875
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=2.7e-31 Score=215.58 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=112.7
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| |.+||||+|+++++|+++||+|++| |+|.+++|+||+|+||+.+|++.|++|+++++++++.|+++
T Consensus 28 ~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-----y~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 28 LYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-----YEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-----CceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5777765 7999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621 79 LQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~ 129 (133)
+++|||+.|+..+..| +|++.++++|++|+++|++|++ .++||||+++
T Consensus 103 ~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~ 151 (462)
T 3tqo_A 103 EKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR 151 (462)
T ss_dssp HHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT
T ss_pred HHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEecccc
Confidence 9999999987655444 6899999999999999999999 7899999975
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.97 E-value=6.5e-31 Score=214.79 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=98.4
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC----------CCCCHHHHHHHHHcCCChHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW----------DAFGLPAENAAHQHGIDPREWT 68 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~----------D~~G~~i~~~a~~~g~~~~~~~ 68 (133)
||+|+|| |.+||||+|++|++|+++||+|++| |+|.+++|+ |+||+||+.+|+++|++|++++
T Consensus 45 ~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-----y~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a 119 (501)
T 3sp1_A 45 VYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-----YKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEIS 119 (501)
T ss_dssp EEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEEEBCSCCC-------------------CCHHHHH
T ss_pred EEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcC-----CceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHH
Confidence 6888887 8999999999999999999999999 999999776 5559999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecCCC
Q psy6621 69 VGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPT 129 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~ 129 (133)
+++++.|++++++|||+.|+.. +..++|++.++++|++|+++|+||+++++||||+.+
T Consensus 120 ~~~~~~f~~d~~~Lgi~~d~~~---~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 120 EFFTEAFFNDCRKLNIVYPDKV---LVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCSEE---EEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCCCCcc---cCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 9999999999999999998743 345789999999999999999999999999999976
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.96 E-value=2.3e-29 Score=202.03 Aligned_cols=120 Identities=18% Similarity=0.083 Sum_probs=109.2
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| |++||||+|+++++|+++||+|++| ++|.+++|+||+|+||+.+|++.|++|.++++++.+.|+++
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-----~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~ 116 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-----HTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED 116 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-----CCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4566555 9999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCcc-cccCCceecCChhHHHHHHHHHHHHHHCCCeEEec----eeeeecCCC
Q psy6621 79 LQGFGCK-FNWESELATCDPKYYKWTQALFLDLYHAGLVYRKE----VDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~-~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~----~~v~~~~~~ 129 (133)
+++|||. +|+ +.+|++ |.+.++++|++|.++|++|+++ +.+||+.+.
T Consensus 117 ~~~Lgi~~~d~--~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~ 168 (414)
T 3c8z_A 117 MAALRVLPPHD--YVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA 168 (414)
T ss_dssp HHHTTCCCCSE--EEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS
T ss_pred HHHcCCCCCcc--eecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh
Confidence 9999998 763 345554 8899999999999999999998 889998753
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.95 E-value=5.1e-28 Score=196.64 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=110.8
Q ss_pred CCCCCCC--CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEE--ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 1 ~y~~~pn--g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
||+|+|| |++||||+|+++++|+++||+|+.| ++|.+++|+||+|++|+.+|++.|.+|+++++++.+.++++
T Consensus 25 ~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G-----~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 25 MYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLG-----YKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp EEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-----CEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcC-----CCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5788888 9999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHhcCccc-ccCCceecCChhHHHHHHHHHHHHHHCCCeEEe-ceeeeecCCC
Q psy6621 79 LQGFGCKF-NWESELATCDPKYYKWTQALFLDLYHAGLVYRK-EVDYSQNLPT 129 (133)
Q Consensus 79 l~~lgi~~-d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~~~~~~ 129 (133)
+++|||.+ |+ +.++++ |.+.+++++++|.++|++|++ ++.||||+++
T Consensus 100 ~~~LgI~~~d~--~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 100 FDALNILRPDM--EPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHTTCCCCSB--CCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred HHHcCCCCCcc--cccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 99999987 54 223433 889999999999999999999 8999999764
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.82 E-value=2.7e-20 Score=156.09 Aligned_cols=119 Identities=11% Similarity=0.043 Sum_probs=97.2
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHH----------------------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAE---------------------------- 54 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~---------------------------- 54 (133)
-|||||++||||+|+.+++|+++|+++..| ++|.++.+++|+|.++.
T Consensus 127 spN~~~~~HiGH~Rs~iigD~laR~l~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 201 (629)
T 2zue_A 127 SVNPTKPLHMGHARNAILGDVMARILRFLG-----YEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKDN 201 (629)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----CEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSC
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccccccC
Confidence 367789999999999999999999999999 99999999999987742
Q ss_pred -----------HHHHHcC--------------------CChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHH
Q psy6621 55 -----------NAAHQHG--------------------IDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWT 103 (133)
Q Consensus 55 -----------~~a~~~g--------------------~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v 103 (133)
..+++.+ ..++++++...+.+++++++|||.+| ...++++..+.+.+
T Consensus 202 ~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~~~~~v 279 (629)
T 2zue_A 202 PIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIVRRKLF 279 (629)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHHHTTHH
T ss_pred cchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCccccchhH
Confidence 1222222 23378899999999999999999886 44455555457899
Q ss_pred HHHHHHHHHCCCeE-----EeceeeeecCC
Q psy6621 104 QALFLDLYHAGLVY-----RKEVDYSQNLP 128 (133)
Q Consensus 104 ~~~f~~L~~~G~iy-----~~~~~v~~~~~ 128 (133)
++++++|.++|++| +.++.++++..
T Consensus 280 ~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~ 309 (629)
T 2zue_A 280 EIALELLSKNENFYIPSDGKYRGAFVMDLR 309 (629)
T ss_dssp HHHHHHHHTSTTEECCSSSTTTTCEEEECT
T ss_pred HHHHHHHHHCCCccccccCCcCCcEEEECc
Confidence 99999999999999 66777777654
No 21
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.81 E-value=6.4e-20 Score=152.89 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=95.4
Q ss_pred CCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHH---------------------------
Q psy6621 4 CTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENA--------------------------- 56 (133)
Q Consensus 4 ~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~--------------------------- 56 (133)
|||||++||||+|+.+++|+++|++++.| ++|.++..++|.|.++...
T Consensus 112 pn~~~~~HiGH~R~~iigD~laR~l~~~G-----~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~ 186 (592)
T 1iq0_A 112 VNPNKELHVGHLRNIALGDAIARILAYAG-----REVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVR 186 (592)
T ss_dssp CCTTSCCBHHHHHHHHHHHHHHHHHHHTT-----EEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHcC-----CceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHH
Confidence 67779999999999999999999999999 9999998888888543111
Q ss_pred -------------------HHHcCCChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 57 -------------------AHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 57 -------------------a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+.+.|. .+++++.+.+.+++++++|||.+| ...++++..+.+.+++++++|.++|++|
T Consensus 187 ~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~kG~~y 263 (592)
T 1iq0_A 187 LHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQSPHVF 263 (592)
T ss_dssp HHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTSTTEE
T ss_pred HHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHCCCcc
Confidence 122344 388999999999999999999887 3345665555789999999999999999
Q ss_pred -----EeceeeeecCC
Q psy6621 118 -----RKEVDYSQNLP 128 (133)
Q Consensus 118 -----~~~~~v~~~~~ 128 (133)
+.++.++++.+
T Consensus 264 ~~~~g~~~G~~~~~~~ 279 (592)
T 1iq0_A 264 RPREGKYAGALVMDAS 279 (592)
T ss_dssp CCSSSTTTTCEEEECT
T ss_pred cCcccCcCCCEEEech
Confidence 66777776654
No 22
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.77 E-value=3.4e-20 Score=152.52 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=89.6
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCC--HHH---HHHHHHc--CCCh----------H
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFG--LPA---ENAAHQH--GIDP----------R 65 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G--~~i---~~~a~~~--g~~~----------~ 65 (133)
.|+|||.+||||+|+++++|+++||++++| ++|.++.++||+| .+| ..++.++ |+++ +
T Consensus 27 gPsPtG~lHIGhaR~al~~D~laR~l~~~g-----~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 27 GITPSGYVHVGNFRELFTAYIVGHALRDKG-----YEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHHHHTTT-----CEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred CCCCCCCcccCCcHHHHHHHHHHHHHHHcC-----CCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 369999999999999999999999999999 9999999999999 666 4455555 8887 8
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHH-HHHHHHHHHHHCC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYK-WTQALFLDLYHAG 114 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~-~v~~~f~~L~~~G 114 (133)
++++.+.+.|+++|++|||..|. +++++. |.+ .+++++++|.++|
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D~---~~~se~-~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVDL---LYASEL-YKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCEE---EEHHHH-HHTTTTHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHcCCCceE---Eechhh-ccchHHHHHHHHHHHch
Confidence 99999999999999999997763 233332 777 8999999999999
No 23
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.77 E-value=1.2e-18 Score=145.57 Aligned_cols=117 Identities=10% Similarity=-0.024 Sum_probs=95.1
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHH---------------------------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAEN--------------------------- 55 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~--------------------------- 55 (133)
-|||+|++||||+|+.+++|+++|+++..| ++|.++..++|+|.++..
T Consensus 151 spN~~~plHvGHlRs~iiGD~laRil~~~G-----~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~ 225 (607)
T 1f7u_A 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLG-----WEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYV 225 (607)
T ss_dssp CCBTTSCCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHH
T ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHcC-----CCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHHHH
Confidence 467889999999999999999999999999 999999999998877522
Q ss_pred ---------------------HHHH------cCCC-----hHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHH-HH
Q psy6621 56 ---------------------AAHQ------HGID-----PREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYY-KW 102 (133)
Q Consensus 56 ---------------------~a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~-~~ 102 (133)
.|++ .|.+ ++++++...+.+++++++|||.+|. ....+ .|. +.
T Consensus 226 ~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~--~~~ES--~~~~~~ 301 (607)
T 1f7u_A 226 RINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDV--YSGES--QVSKES 301 (607)
T ss_dssp HHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSE--EEEGG--GCCHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccee--ecCcc--hhhhhH
Confidence 1222 2433 4678999999999999999999872 11221 233 67
Q ss_pred HHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621 103 TQALFLDLYHAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 103 v~~~f~~L~~~G~iy~~~~~v~~~~~ 128 (133)
+.++++.|.++|++|+.++.++++..
T Consensus 302 ~~~vi~~L~~kG~~ye~dGa~~~~~~ 327 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDKGAVLIDLT 327 (607)
T ss_dssp HHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred HHHHHHHHHhCCCEEEECCcEEEEec
Confidence 89999999999999999999998754
No 24
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.65 E-value=8.1e-16 Score=125.02 Aligned_cols=116 Identities=14% Similarity=0.008 Sum_probs=91.2
Q ss_pred CCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHH-------HH--cCCC---h------
Q psy6621 3 DCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAA-------HQ--HGID---P------ 64 (133)
Q Consensus 3 ~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a-------~~--~g~~---~------ 64 (133)
.|||||++|+||+|+.+++|+++|++++.| ++|.....+.|.|.++...+ .+ .|.+ |
T Consensus 38 s~n~~~~~h~gh~r~~~~gd~~~r~~~~~G-----~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g 112 (464)
T 3fnr_A 38 SANPTGPLHIGHARGAVFGDTLTRLARHLG-----YKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKG 112 (464)
T ss_dssp CCCSSSSCBGGGHHHHHHHHHHHHHHHHTT-----CEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCS
T ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHcC-----CceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCc
Confidence 589999999999999999999999999999 99999999999999874332 11 1211 0
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHhcCcccc-cCCceecCChhHHHHHHHHHHHHHHCCC
Q psy6621 65 ----------------------------REWTVGNIATMKSQLQGFGCKFN-WESELATCDPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 65 ----------------------------~~~~~~~~~~~~~~l~~lgi~~d-~~~~~~T~~~~~~~~v~~~f~~L~~~G~ 115 (133)
+..++...+.+++++++|||.+| |..+. .-|. .+.++++.|.++|+
T Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Es----s~~~-~~~~vv~~L~~~g~ 187 (464)
T 3fnr_A 113 EYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSER----SYYD-ALNATLESLKEHKG 187 (464)
T ss_dssp HHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGG----GGST-THHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHH----HHHH-HHHHHHHHHHHCCC
Confidence 11234456789999999999998 33331 1222 68999999999999
Q ss_pred eEEeceeeeecCC
Q psy6621 116 VYRKEVDYSQNLP 128 (133)
Q Consensus 116 iy~~~~~v~~~~~ 128 (133)
+|++++.++++..
T Consensus 188 ~~e~dGa~~~~~~ 200 (464)
T 3fnr_A 188 IYEQEGKIWLASS 200 (464)
T ss_dssp EEEETTEEEECGG
T ss_pred EEEeCCeEEEEec
Confidence 9999999988653
No 25
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.37 E-value=5.2e-13 Score=103.10 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|+|||.|||||+++++.....+| + +.+.++.-+||.+.+ +...++.+.|.++|++
T Consensus 10 FAPsPtG~LHiG~~rtal~n~l~Ar-----~-----~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~ 66 (298)
T 1nzj_A 10 FAPSPSGELHFGSLIAALGSYLQAR-----A-----RQGRWLVRIEDIDPP-------------REVPGAAETILRQLEH 66 (298)
T ss_dssp ECCCTTSCCCHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHH
T ss_pred ECcCCCCCccHHHHHHHHHHHHHHH-----h-----cCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHH
Confidence 7899999999999999986655555 4 445677777775432 2336789999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|-. ++.. .++.+..++++.+|.++|++|.
T Consensus 67 LGl~~D~~-~~~q--Ser~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 67 YGLHWDGD-VLWQ--SQRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TTCCCSSC-CEEG--GGCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCCC-Ceee--eCCHHHHHHHHHHHHHcCCccc
Confidence 99965521 2222 2367889999999999999997
No 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.36 E-value=7.7e-13 Score=109.17 Aligned_cols=90 Identities=8% Similarity=0.005 Sum_probs=72.7
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|+|||.||||||+++++...++| + +.+.++..+||.+.+ +...++.+.|.++|++
T Consensus 101 FaPsPtG~LHIGhaRtal~n~l~Ar-----~-----~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~w 157 (553)
T 3aii_A 101 FAPNPSGPLHIGHARAAILNHEYAR-----K-----YDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEW 157 (553)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHH
Confidence 7999999999999999998777776 4 555677788887542 2255889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| .. +...+|.+...+++.+|+++|++|.
T Consensus 158 LGl~wd--~~--~~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 158 LGVEWD--ET--VIQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HTCCCS--EE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC--CC--cccccCHHHHHHHHHHHHHcCCcee
Confidence 999554 33 3334588999999999999999996
No 27
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.34 E-value=2.2e-12 Score=106.47 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||||++++...+|| ...| .++..+||.+. .+.+.++.+.|.++|++
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar--~~gG--------~fiLRieDTD~-------------~R~~~e~~~~I~edL~w 87 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ--DYKG--------QCNLRFDDTNP-------------VKEDIEYVESIKNDVEW 87 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH--HTTC--------EEEEEECCCCG-------------GGCCHHHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCC--------EEEEEECCCCc-------------hhcCHHHHHHHHHHHHH
Confidence 7999999999999999999888887 3444 56666676643 34567889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|- .+++ ..+|.+...+...+|+++|++|.
T Consensus 88 LGl~wde-~~~~--qSer~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 88 LGFHWSG-NVRY--SSDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TTCCCSS-SCEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCC-CCee--hcccHHHHHHHHHHHHHCCCcee
Confidence 9995542 3333 33577878888899999999996
No 28
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.31 E-value=3.6e-12 Score=106.25 Aligned_cols=92 Identities=9% Similarity=0.034 Sum_probs=71.2
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|+|||+|||||+|++++.+.+|| ...| .-++.+ +| +++..-..++.+.|.++|++
T Consensus 134 FaPsPTG~LHiG~artAl~n~l~Ar--~~~G-----~~ilRi---eD-------------tD~~r~~~~~~~~I~~dL~w 190 (592)
T 3al0_C 134 FAPSPTGHLHVGGARTALFNWMFAR--KEGG-----KFILRI---ED-------------TDTERSSREYEQQILESLRW 190 (592)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHH--HHTC-----EEEECB---CC-------------CCSSSCCHHHHHHHHHHHHH
T ss_pred ECCCCCCCccHHHHHHHHHHHHHHH--hcCC-----cEEEEe---cC-------------cChhhccHHHHHHHHHHHHH
Confidence 7899999999999999999999999 4677 555444 43 23444566889999999999
Q ss_pred cCcccccCC-------ceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWES-------ELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~-------~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|-.. ++. ..++.+..++.+.+|.++|++|.
T Consensus 191 lGl~~D~~~~~gG~~gp~~--qSer~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 191 CGLDWDEGPDIGGDFGPYR--QSERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp TTCCCSBBTTTBCTTCCCB--STTCHHHHHHHHHHHHHTTTEEE
T ss_pred cCCCCCCCCCcCCCCCCee--eeCCHHHHHHHHHHHHHcCCceE
Confidence 999654211 223 33456889999999999999997
No 29
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.28 E-value=8.8e-12 Score=101.71 Aligned_cols=94 Identities=9% Similarity=0.009 Sum_probs=71.2
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|+|||+|||||+|++++.|.+||. ..| .-|+.+ +|.+ +.....++.+.|.++|++
T Consensus 18 faPsPTG~LHiG~aRtAl~n~~~Ar~--~~G-----~~iLRi---eDtD-------------~~r~~~~~~~~I~~~l~w 74 (481)
T 2o5r_A 18 FAPSPTGFLHVGGARTALFNFLFARK--EKG-----KFILRI---EDTD-------------LERSEREYEEKLMESLRW 74 (481)
T ss_dssp ECCCCCSCCBHHHHHHHHHHHHHHHH--HTC-----EEEECB---CCSS-------------CCSGGGHHHHHHHHHHHH
T ss_pred ECCCCCCCcCHHHHHHHHHHHHHHHH--cCC-----eEEEEE---ecCC-------------ccccHHHHHHHHHHHHHH
Confidence 78999999999999999999999995 678 766553 3332 334446778889999999
Q ss_pred cCcccccCCc-----eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESE-----LATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~-----~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|-... -.....++.+..+++.++|+++|.+|.
T Consensus 75 lGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 75 LGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE
Confidence 9995542110 012244577889999999999999985
No 30
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.27 E-value=6e-12 Score=107.98 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=71.9
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++...++| + +.+.++..+||.+. .+...++.+.|.++|++
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~Ar-----~-----~gG~fiLRIEDTD~-------------~R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTAR-----Q-----YGGQFNLRMDDTNP-------------ELARQEYVDSIADDLKW 127 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHH-----H-----TTCEEEEEECCCCT-------------TTCCHHHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----H-----cCCEEEEEECcCCc-------------ccccHHHHHHHHHHHHH
Confidence 7899999999999999999877777 3 44566677777643 23356889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| +.++ ...+|.+...+++.+|+++|++|.
T Consensus 128 LGl~wd-e~~~--~qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWG-EHFY--YASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCT-TCEE--EGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC-CCcc--cHhhhHHHHHHHHHHHHHCCCcEe
Confidence 999554 2333 334588999999999999999996
No 31
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.25 E-value=1.8e-11 Score=99.97 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|+++....++| ...| .-+ .-+||. ++.....++.+.|.++|++
T Consensus 30 FAPSPTG~lHiG~~rtal~n~l~Ar--~~~G-----~fi---lRieDt-------------D~~R~~~~~~~~i~~dl~w 86 (490)
T 4g6z_A 30 FAPSPTGFIHLGNIRSALYPWAFAR--KMKG-----TFV---LRIEDT-------------DVERSSQEAVDAILEGMAW 86 (490)
T ss_dssp ECCCCCSCCBHHHHHHHHHHHHHHH--HTTC-----EEE---EEECCC-------------CGGGCCHHHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--hcCC-----eEE---EEeCCC-------------CcccccHHHHHHHHHHHHH
Confidence 7899999999999999999998888 4456 444 444443 2333456889999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| .. .....++.+..++++.+|.++|++|.
T Consensus 87 lGl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 87 LGLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp TTCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEEe
Confidence 999544 32 23334578899999999999999994
No 32
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.25 E-value=4.7e-12 Score=103.57 Aligned_cols=91 Identities=11% Similarity=0.063 Sum_probs=69.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+|+++....++| ...| .++.-+||.+. .....++.+.|.++|++
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar--~~~G--------~filRieDtD~-------------~R~~~~~~~~i~~dL~w 62 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYAR--HRGG--------KFILRIEDTDR-------------ERSRPEYTENILEGLQW 62 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH--HTTC--------EEEEEECCCSS-------------SSCCHHHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--hcCC--------eEEEEEeeCCc-------------cccchHHHHHHHHHHHH
Confidence 7899999999999999998766666 3344 56666666542 22236789999999999
Q ss_pred cCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+. |+.. .....++.+..++++.+|.++|++|.
T Consensus 63 LGl~--wde~-~~~QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 63 LGLT--WDEG-PYFQSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp TTCC--CSEE-EEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCC--CCCC-CccccCCHHHHHHHHHHHHHCCCceE
Confidence 9994 4442 22233477899999999999999996
No 33
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.21 E-value=1.5e-11 Score=101.01 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=71.2
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.||||||+++++.-.+|| +..| .-++ =+| ++++.....++.+.|.++|++
T Consensus 29 FAPsPtG~LHiG~artAl~n~~~Ar--~~~G-----~fiL---Rie-------------DtD~~R~~~~~~~~I~~~L~w 85 (512)
T 4gri_A 29 YAPSPTGLQHIGGIRTALFNYFFAK--SCGG-----KFLL---RIE-------------DTDQSRYSPEAENDLYSSLKW 85 (512)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHH--HTTC-----EEEE---CBC-------------CCCTTSCCHHHHHHHHHHHHH
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHH--HcCC-----EEEE---EeC-------------cCCCCcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999998 6677 4332 223 445566667889999999999
Q ss_pred cCcccccCC----ce-ecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWES----EL-ATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~----~~-~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..|-.. ++ ...+.++.+..++...+|+++|++|.
T Consensus 86 lGl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 86 LGISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp HTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 999665211 01 12334566788899999999999995
No 34
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.18 E-value=2.6e-11 Score=99.06 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=70.5
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+++++..-.+|| ...| .-+ .=+||. ++.....++.+.|.++|++
T Consensus 30 FAPsPtG~LHiG~~rtal~n~l~Ar--~~~G-----~fi---lRieDt-------------D~~R~~~~~~~~I~~dL~w 86 (488)
T 3afh_A 30 FAPSPTGHLHVGGARTALFNWMFAR--KEGG-----KFI---LRIEDT-------------DTERSSREYEQQILESLRW 86 (488)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHH--HHTC-----EEE---ECBCCC-------------CTTTCCHHHHHHHHHHHHH
T ss_pred ECCCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEE---EEEeeC-------------CcccccHHHHHHHHHHHHH
Confidence 7899999999999999999988888 5566 433 334443 4444566889999999999
Q ss_pred cCcccccCCce-------ecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| ... +....++.+..++.+.+|.++|++|.
T Consensus 87 lGl~wD--e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 87 CGLDWD--EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp TTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC--cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe
Confidence 999654 421 12334567889999999999999997
No 35
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.15 E-value=2.2e-11 Score=99.08 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=71.1
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||++++++.-.+|| ...| . ++.-+||. ++.....++.+.|.++|++
T Consensus 6 FaPsPtG~LHiG~~rtal~n~l~Ar--~~~G-----~---filRieDt-------------D~~R~~~~~~~~I~~dl~w 62 (468)
T 1j09_A 6 IAPSPTGDPHVGTAYIALFNYAWAR--RNGG-----R---FIVRIEDT-------------DRARYVPGAEERILAALKW 62 (468)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHH--HTTC-----E---EEECBCCC-------------CTTSCCTTHHHHHHHHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCC-----E---EEEEeCcC-------------CCcccChHHHHHHHHHHHH
Confidence 7899999999999999999999988 5566 4 33444444 3344456789999999999
Q ss_pred cCcccccCCce-------ecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESEL-------ATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~~-------~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| ... +....++.+..++...+|.++|++|.
T Consensus 63 lGl~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 63 LGLSYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 999544 331 13444578899999999999999995
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.11 E-value=7.2e-11 Score=96.64 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=72.0
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
|+|.|||.|||||+++++..-.+|| ...| .-++. + +++++.....++.+.|.++|++
T Consensus 11 FAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG-----~fiLR---i-------------eDtD~~R~~~~~~~~I~~~L~w 67 (498)
T 2ja2_A 11 FCPSPTGTPHVGLVRTALFNWAYAR--HTGG-----TFVFR---I-------------EDTDAQRDSEESYLALLDALRW 67 (498)
T ss_dssp ECCCSSSSCBHHHHHHHHHHHHHHH--HHTC-----EEEEC---B-------------CCCCTTTCCHHHHHHHHHHHHH
T ss_pred ECcCCCCCccHHHHHHHHHHHHHHH--HcCC-----EEEEE---E-------------CcCCCcccChHHHHHHHHHHHH
Confidence 7899999999999999999999999 6677 43322 2 2345666667889999999999
Q ss_pred cCcccccCCc-------eecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 82 FGCKFNWESE-------LATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 82 lgi~~d~~~~-------~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
||+..| .- -.....++.+..++...+|+++|++|.
T Consensus 68 lGl~wD--egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 68 LGLDWD--EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp HTCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcC--CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEE
Confidence 999554 30 123344577899999999999999996
No 37
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.60 E-value=0.016 Score=44.85 Aligned_cols=65 Identities=8% Similarity=0.049 Sum_probs=41.1
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||..+.+.. +.++++ | +++.+..| |.|++ -...++++ ..++...+.+++.++|+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g-----~~~~~~ia-D~ha~-------~~~~~~~~-l~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--K-----SQMFMFIA-NYHAM-------TSSQDGEK-LKQNSLKAAAAFLSLGI 72 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--T-----SCCEEEEC-HHHHT-------TTCCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--C-----CCEEEEEe-cCeee-------cCCCCHHH-HHHHHHHHHHHHHHcCC
Confidence 48999999999976544 455554 8 88876655 33321 11224444 35556677777778888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 73 dp~ 75 (322)
T 3tzl_A 73 DPQ 75 (322)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.51 E-value=0.032 Score=43.38 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=40.7
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||..+.+. -+.+++ ..| ++|.+..| |.|++- -...+|++ .+++.....+++.++|+
T Consensus 20 ~PTG~lHLGn~~g~l~--~~~~lQ-~~G-----~~~~~~Ia-D~ha~t------~~~~dp~~-~~~~~~~~~~~~lA~Gl 83 (340)
T 2g36_A 20 RPTGKLHIGHLVGALE--NWVKLQ-EEG-----NECFYFVA-DWHALT------THYDDVSK-LKEYTRDLVRGFLACGI 83 (340)
T ss_dssp CCCSSCBHHHHHTHHH--HHHHHH-HTT-----CEEEEEEC-HHHHHH------HHTTCCTT-HHHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHhHHHHHH--HHHHHH-HCC-----CCEEEEEe-cceeec------CCCCCHHH-HHHHHHHHHHHHHHhCC
Confidence 4899999999998653 233333 468 88876652 223221 11235554 34555666677888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 84 dp~ 86 (340)
T 2g36_A 84 DPE 86 (340)
T ss_dssp CTT
T ss_pred Chh
Confidence 654
No 39
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.056 Score=41.53 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=39.7
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.|||||+. .+. .+.++++ .| +++.+..|=. |+. ... ..++++ +.++...+.+++.++|+
T Consensus 40 ~PTg~lHlG~l~-~l~--~~~~lq~-~g-----~~~~~~i~D~-~a~-----~~d-~~~~~~-i~~~~~~~~~~~~a~Gl 102 (323)
T 2cyb_A 40 EPSGEIHLGHMM-TVQ--KLMDLQE-AG-----FEIIVLLADI-HAY-----LNE-KGTFEE-IAEVADYNKKVFIALGL 102 (323)
T ss_dssp CCCSCCBHHHHH-HHH--HHHHHHH-TT-----CEEEEEECHH-HHH-----HTT-CCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCCcchHHHHH-HHH--HHHHHHH-CC-----CcEEEEECCc-eeE-----cCC-CCCHHH-HHHHHHHHHHHHHHhCC
Confidence 489999999963 332 3444444 47 7765554321 110 011 125554 57777889999999998
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 103 dp~ 105 (323)
T 2cyb_A 103 DES 105 (323)
T ss_dssp CTT
T ss_pred Ccc
Confidence 544
No 40
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=95.12 E-value=0.046 Score=43.04 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=41.6
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||..+.. -.+++...| ++|.+..+ |.|.. --...+..+..+.+.....+++-++|+
T Consensus 78 ~PTG~lHLGhyv~~~----~~~~lq~~~-----~~~~~~Ia-D~ha~------t~~~~~~~e~~r~~~~~~~~~~lA~Gl 141 (372)
T 3a04_A 78 MPSGKFHFGHKLTVD----QLIYLQKNG-----FKVFVAIA-DAEAF------AVRRIGREEAVRIAVEEYIANMIALGL 141 (372)
T ss_dssp CCCSCCBHHHHHHHH----HHHHHHHTT-----CEEEEEEC-HHHHH------HTTCCCHHHHHHHHHHTTHHHHHHHTC
T ss_pred CCCcHhHHHHHHHHH----HHHHHHhCC-----CeEEEEEe-cchhh------ccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 489999999988542 234444568 99866543 33311 112233445556666777778888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 142 DP~ 144 (372)
T 3a04_A 142 DPK 144 (372)
T ss_dssp CTT
T ss_pred ChH
Confidence 665
No 41
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=95.03 E-value=0.077 Score=41.15 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=38.8
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceee-ecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVF-QPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~-~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|||.|||||..+.+. -+.++++..+ ++|. ++-++ |++-. ..+-+|+ ..+++...+.+++.++|
T Consensus 9 ~PTg~lHlGh~~g~l~--~~~~lQ~~G~-----~~~~~~IaD~--~a~~~-----~~~~~~~-~i~~~~~~~~~~~la~G 73 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIK--QWVAIGEKLG-----RDAFFCIVDY--HALTN-----PLAYDPS-TLAQRTFEAALVNIAAG 73 (337)
T ss_dssp CSCSCCBHHHHHTHHH--HHHHHHHHHG-----GGEEEEECGG--GGGGS-----TTTSCHH-HHHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHH--HHHHHHhcCC-----CCEEEEEeCc--eeecC-----CCCCCHH-HHHHHHHHHHHHHHHhC
Confidence 4899999999997752 2456666553 4443 33333 22200 0023343 44555566677788888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 74 ldp~ 77 (337)
T 2el7_A 74 LDPE 77 (337)
T ss_dssp CCTT
T ss_pred CChh
Confidence 8654
No 42
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=94.89 E-value=0.043 Score=42.44 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=40.4
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||..+.+.. +.+++ .| +++.+..| |.|++- -..+++ -..++...+.+++.++|+
T Consensus 9 ~PTG~lHlGn~vg~l~~--~~~lQ--~g-----~~~~~~Ia-D~ha~~-------~~~~~e-~i~~~~~~~~~~~la~Gl 70 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQ--FVELQ--HE-----YNCYFCIV-DQHAIT-------VWQDPH-ELRQNIRRLAALYLAVGI 70 (328)
T ss_dssp CCCSCCBHHHHHHTHHH--HHHHT--TT-----SEEEEEEC-HHHHTT-------SCCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--cC-----CcEEEEEe-Cceeec-------CCCCHH-HHHHHHHHHHHHHHHhCC
Confidence 48999999999987632 33443 38 88865554 212110 013554 345566688888889998
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 71 dp~ 73 (328)
T 1i6k_A 71 DPT 73 (328)
T ss_dssp CTT
T ss_pred Chh
Confidence 654
No 43
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.042 Score=43.49 Aligned_cols=32 Identities=13% Similarity=-0.012 Sum_probs=21.8
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG 45 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G 45 (133)
-|||.|||||+++++. +.++++ .| +++.+..|
T Consensus 47 ~PTG~LHlG~~~~al~---~~~~~q-~g-----~~~ii~I~ 78 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTK---LADFLK-AG-----CEVTVLLA 78 (394)
T ss_dssp CCCSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEEC
T ss_pred CCCCCccHHHHHHHHH---HHHHHH-cC-----CcEEEEEc
Confidence 3799999999887654 344444 67 77655444
No 44
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=94.80 E-value=0.053 Score=41.60 Aligned_cols=64 Identities=13% Similarity=-0.011 Sum_probs=39.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.||||| ...+.. +.++++ .| +++.+..|=++ +. .-. ..+++ -++++...+.+++.++|+
T Consensus 36 ~PTg~lHlGh-l~~l~~--~~~lQ~-~g-----~~~~~~i~D~~-a~-----~~~-~~~~e-~i~~~~~~~~~~~~a~G~ 98 (314)
T 2zp1_A 36 EPSGKIHLGH-YLQIKK--MIDLQN-AG-----FDIIILLADLA-AY-----LNQ-KGELD-EIRKIGDYNKKVFEAMGL 98 (314)
T ss_dssp CCCSSCBHHH-HHHHHH--HHHHHH-TT-----EEEEEEECHHH-HH-----HTT-CCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcchhh-HHHHHH--HHHHHH-CC-----CCEEEEEecce-Ee-----cCC-CCCHH-HHHHHHHHHHHHHHhcCC
Confidence 3799999999 554433 445444 58 88866654221 11 001 12444 446666889999999997
Q ss_pred c
Q psy6621 85 K 85 (133)
Q Consensus 85 ~ 85 (133)
.
T Consensus 99 d 99 (314)
T 2zp1_A 99 K 99 (314)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=94.78 E-value=0.088 Score=41.34 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=22.0
Q ss_pred CCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621 6 EEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG 45 (133)
Q Consensus 6 png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G 45 (133)
|||.|||||..+.+. +.++++ .| +++.+..|
T Consensus 44 PTG~lHlG~~~~~l~---~~~~~q-~g-----~~~i~~I~ 74 (372)
T 1n3l_A 44 TTGKPHVAYFVPMSK---IADFLK-AG-----CEVTILFA 74 (372)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TT-----CEEEEEEC
T ss_pred CCCcccHHHHHHHHH---HHHHHH-CC-----CCEEEEEc
Confidence 899999999887655 444444 67 77765544
No 46
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=94.65 E-value=0.097 Score=41.50 Aligned_cols=87 Identities=9% Similarity=0.004 Sum_probs=48.9
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||..+.+.. .+++...| .+|.+..+ |.|+.- -..+.++++ +.++...+.+++.++|+
T Consensus 81 ~PTG~lHLGh~v~~~~~---~~lQ~~~g-----~~~~i~Ia-D~ha~~-----~~~~~~~e~-i~~~~~~~~~~~lA~Gl 145 (392)
T 3jxe_A 81 GPSGPMHIGHIIPFFAT---KWLQEKFG-----VNLYIQIT-DDEKFL-----FKENLTFDD-TKRWAYDNILDIIAVGF 145 (392)
T ss_dssp CCSSCCBHHHHHHHHHH---HHHHHHHC-----CEEEEEEC-HHHHHH-----HCSSCCHHH-HHHHHHHHHHHHHTTCC
T ss_pred CCCCchhHHHHHHHHHH---HHHHHhcC-----CceEEEec-chHHhh-----cCCCCCHHH-HHHHHHHHHHHHHHhCc
Confidence 48899999999876421 22333368 88877766 433210 112355554 45556677778888888
Q ss_pred ccccCCce-ecCChhHHHHHHHH
Q psy6621 85 KFNWESEL-ATCDPKYYKWTQAL 106 (133)
Q Consensus 85 ~~d~~~~~-~T~~~~~~~~v~~~ 106 (133)
..+-...+ .+.-+.|.+.++.+
T Consensus 146 Dp~kt~i~~qS~~~~~~~~~~~l 168 (392)
T 3jxe_A 146 DPDKTFIFQNSEFTKIYEMAIPI 168 (392)
T ss_dssp CTTSEEEEETTTSTHHHHHHHHH
T ss_pred CccceEEEECchhHHHHHHHHHH
Confidence 65421111 12224455555443
No 47
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=94.65 E-value=0.038 Score=43.35 Aligned_cols=68 Identities=10% Similarity=0.001 Sum_probs=39.8
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.||||| ...+.. +.++++ .| +++.+..| |.|+.- ....|.+++++ +++...+.+++.++|+
T Consensus 43 ~PTg~lHlG~-l~~l~~--~~~lQ~-~G-----~~~~~~ia-D~~a~~----~~ps~~~~e~i-~~~~~~~~~~~la~G~ 107 (364)
T 2cya_A 43 EPSGVAHIGW-LVWMYK--VKDLVE-AG-----VDFSVLEA-TWHAYI----NDKLGGDMDLI-RAAARIVRRVMEAAGV 107 (364)
T ss_dssp CCCSSCBTHH-HHHHHH--HHHHHH-TT-----CEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCCccHhH-HHHHHH--HHHHHH-CC-----CCEEEEEe-Ccchhh----CCCCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 4899999999 554433 445444 58 88876655 222210 11113354444 4455677788888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 108 dp~ 110 (364)
T 2cya_A 108 PVE 110 (364)
T ss_dssp CGG
T ss_pred Ccc
Confidence 654
No 48
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=94.35 E-value=0.067 Score=42.35 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=38.3
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||..+.. .+.++++..| ..|.++.+-+ + +......+++++ +++...+.+++-++|+
T Consensus 90 ~PTG~lHLGh~v~~~---~~~~lQ~~~g-----~~v~i~I~D~-~------a~~~r~~~~e~i-~~~~~~~~~~~lA~Gl 153 (386)
T 3hzr_A 90 YPQKEVALEEYITLE---FARYLQDAFN-----IQVIIQILDD-I------KVLNREATINEA-SKMSNDLMKYILAFGF 153 (386)
T ss_dssp CCCSSCBGGGHHHHH---HHHHHHHHHC-----CEEEEEECHH-H------HHHTTSCCHHHH-HHHHHHHHHHHHHTCC
T ss_pred CCCCCccHHHHHHHH---HHHHHHHhcC-----CeEEEEeCch-H------HhhcCCCCHHHH-HHHHHHHHHHHHHcCC
Confidence 489999999977752 2333444457 6776662221 1 122222555544 4445566777777777
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 154 Dp~ 156 (386)
T 3hzr_A 154 NED 156 (386)
T ss_dssp CGG
T ss_pred CCc
Confidence 554
No 49
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=94.23 E-value=0.071 Score=41.50 Aligned_cols=65 Identities=8% Similarity=-0.036 Sum_probs=40.6
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.|||.+||||..+.+-. +.+++. + +++.+..+ |.|.+ -...+|+ ...++...+.+++.+.|+
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~-----~~~~~~ia-D~ha~-------~~~~~~~-~~~~~~~~~~~~~lA~Gl 75 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQD--D-----YDCQYCVV-DLHAI-------TVRQDPQ-ALHEATLDALAICLAVGV 75 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHHH--H-----SEEEEEEC-HHHHT-------TSCCCHH-HHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--c-----CeEEEEEe-cceeE-------cCCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 48999999999986522 334443 6 77665543 33321 1124554 445666678888888998
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 76 Dp~ 78 (341)
T 3sz3_A 76 DPK 78 (341)
T ss_dssp CTT
T ss_pred Chh
Confidence 765
No 50
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=94.11 E-value=0.081 Score=41.93 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=41.1
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.+||||..+.+.. +.+++ .| ++|.+..+ |.|.+ -...+|.++ .++...+..++.+.|+
T Consensus 43 ~PTG~lHLGhyvGal~~--~~~LQ--~~-----~~~~~~Ia-D~hAl-------t~~~~~~~l-r~~~~~~aa~~lA~Gl 104 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQ--FVELQ--HD-----YNSYFCIV-DQHAI-------TVPQDRLEL-RKNIRNLAALYLAVGL 104 (388)
T ss_dssp CCCSCCBHHHHHHTHHH--HHHTT--TT-----SEEEEEEC-HHHHT-------TSCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCcchHHHHHHHHHH--HHHHH--cc-----CcEEEEEe-cceee-------ecCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 48999999999887542 22222 48 88876553 43322 113455544 5555677888888998
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 105 Dp~ 107 (388)
T 3prh_A 105 DPE 107 (388)
T ss_dssp CTT
T ss_pred Chh
Confidence 765
No 51
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=93.75 E-value=0.078 Score=41.30 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=39.1
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||..+.+.. +.+++. | +++.+..+= .|++ -...+|+++ .++...+.+++.+.|+
T Consensus 12 ~PTG~lHLGn~vg~l~~--~~~lQ~--~-----~~~~~~IaD-~ha~-------~~~~d~~~i-~~~~~~~~~~~lA~Gl 73 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQS--LIELQE--Q-----CQLFVFVAD-LHSI-------TVDFQPQAL-KQNNFDLVRTLLAVGL 73 (348)
T ss_dssp CCCTTCBHHHHHHTGGG--HHHHHH--H-----SEEEEEECH-HHHT-------TSCCCHHHH-HHHHHHHHHHHHHTTC
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--C-----CcEEEEEcC-hhhc-------cCCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 48999999999987632 334443 7 777554432 1111 111455544 4456677778888888
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 74 dp~ 76 (348)
T 2yy5_A 74 DPQ 76 (348)
T ss_dssp CTT
T ss_pred Chh
Confidence 665
No 52
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=93.70 E-value=0.27 Score=39.71 Aligned_cols=68 Identities=10% Similarity=-0.048 Sum_probs=40.7
Q ss_pred CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|| |.|||||..+.+ .+.+++..-| ..|.+. .|++ +....+...+++++ .++...+.+++.++|
T Consensus 99 dPTagsLHLGH~v~~~---~l~~lQ~~~g-----~~v~I~-----IgD~-~a~~~r~~lt~E~I-~~n~~~~~~~~lA~G 163 (451)
T 3foc_A 99 GPSSGALHLGHLLPFI---FTKYLQDAFK-----CYVVIQ-----ITDD-EKFLRNRSLSYAEV-DSYTRENIKDIIACG 163 (451)
T ss_dssp CCCSSCCBHHHHHHHH---HHHHHHHHHT-----CEEEEE-----ECHH-HHHHHCTTCCHHHH-HHHHHHHHHHHHTTT
T ss_pred CCCCCCccHHHHHHHH---HHHHHHHccC-----ceEEEE-----eeCc-HHhhcccCCCHHHH-HHHHHHHHHHHHHcC
Confidence 488 799999977654 2334555557 666664 3444 11112224565544 556667778888888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 164 lDpe 167 (451)
T 3foc_A 164 FDPD 167 (451)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 7543
No 53
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=93.49 E-value=0.088 Score=41.42 Aligned_cols=68 Identities=9% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CCCCcCcchHHHHHHHHH-HHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSG-AECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~D-il~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|||.|||||. ++.- .+.+++ ..| ++|.+..| |-|+.- ....|.++.++ +++...+.+.+.++|
T Consensus 64 ~PTg~lHlG~g---vl~~~~~~~lQ-~~G-----~~~~~lIa-D~ha~i----~d~~~~~~~~i-~~~~~~~~~~~~a~G 128 (373)
T 3vgj_A 64 EPSGRMHIAQG---LLKSIIVNKLT-SNG-----CTFIFWIA-DWFAHL----NNKMSGDLKKI-KKVGSYFIEVWKSCG 128 (373)
T ss_dssp CCCSSCBHHHH---HHHHHHHHHHH-TTT-----CEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTT
T ss_pred CCCCCceehhh---HHHHHHHHHHH-HCC-----CcEEEEEe-cceeEe----cCCCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 38999999992 2222 244544 458 88776665 333220 01123344433 444555667788888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 129 ~dp~ 132 (373)
T 3vgj_A 129 MNME 132 (373)
T ss_dssp CCST
T ss_pred CChh
Confidence 7554
No 54
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=93.45 E-value=0.076 Score=41.80 Aligned_cols=70 Identities=9% Similarity=-0.053 Sum_probs=37.5
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHH----HHHHHHHHHHH
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTV----GNIATMKSQLQ 80 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~----~~~~~~~~~l~ 80 (133)
-|||.|||||....+.. +.++++ .| +++.+..|-.+ +. .....|.+++++.. .+...+.+++.
T Consensus 41 ~PTg~lHlG~yl~~l~~--~~~lQ~-~G-----~~~~~~iaD~h-a~----~~~~~g~~~e~i~~~~~~~~~~~~~~~~l 107 (375)
T 2cyc_A 41 EISGYIHLGTGLMAGAK--IADFQK-AG-----IKTRVFLADWH-SW----INDKLGGDLEVIQEVALKYFKVGMEKSIE 107 (375)
T ss_dssp CCCSCCBHHHHHHHHHH--HHHHHH-TT-----CBCEEEECHHH-HH----HTTGGGGCHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCcCchHHHHHHHH--HHHHHH-CC-----CcEEEEecCcE-EE----cCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999995443332 455554 58 87765554221 11 01122344543322 22333337788
Q ss_pred hcCcccc
Q psy6621 81 GFGCKFN 87 (133)
Q Consensus 81 ~lgi~~d 87 (133)
++|+..+
T Consensus 108 a~G~dp~ 114 (375)
T 2cyc_A 108 VMGGDPK 114 (375)
T ss_dssp HTTCCGG
T ss_pred HhCCCcc
Confidence 8888654
No 55
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=93.34 E-value=0.3 Score=38.65 Aligned_cols=67 Identities=10% Similarity=-0.072 Sum_probs=40.6
Q ss_pred CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHhc
Q psy6621 5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQH-GIDPREWTVGNIATMKSQLQGF 82 (133)
Q Consensus 5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~-g~~~~~~~~~~~~~~~~~l~~l 82 (133)
.|| |.|||||..+.+ .+.++++..| ..|.+. .|++- +.... ..+++++ .++...+.+++.++
T Consensus 82 ~PTa~~lHlGh~v~~~---~~~~lQ~~~~-----~~v~i~-----I~D~~--~~~~r~~~~~e~i-~~~~~~~~~~~lA~ 145 (393)
T 3hv0_A 82 GPSSESLHVGHLVPFL---FTKYLQDTFK-----VPLVIQ-----LTDDE--KFIFKSNLTLEET-HNYAYENMKDIIAC 145 (393)
T ss_dssp CCSSSSCBSTTHHHHH---HHHHHHHHHC-----CCEEEE-----ECHHH--HHHHCTTCCHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHHHHH---HHHHHHHhcC-----CCeEee-----ccChH--HHhhccCCCHHHH-HHHHHHHHHHHHHc
Confidence 488 689999977654 3444555557 666553 33331 22333 5565444 55556777888888
Q ss_pred Ccccc
Q psy6621 83 GCKFN 87 (133)
Q Consensus 83 gi~~d 87 (133)
|+..+
T Consensus 146 GlDp~ 150 (393)
T 3hv0_A 146 GFDPE 150 (393)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 87544
No 56
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=93.30 E-value=0.25 Score=39.20 Aligned_cols=67 Identities=7% Similarity=-0.084 Sum_probs=40.7
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
.||| .|||||..+. ..+.++++..| ..|.++ .|++. ++.....+++++ .++...+.+++.++|
T Consensus 86 ~PTg~~lHLGh~v~~---~~~~~lQ~~~~-----~~v~i~-----I~D~~--~~l~~~~~~e~i-~~~~~~~~~~~lA~G 149 (395)
T 3i05_A 86 GPSSESMHMGHLIPF---MFTKWLQDSFR-----VPLVIQ-----MTDDE--KFYFRNIPMEQV-EAMTTENIKDIIAMG 149 (395)
T ss_dssp CCCSSCCBGGGSHHH---HHHHHHHHHHT-----CCEEEE-----ECHHH--HHHHSCCCHHHH-HHHHHHHHHHHHTTT
T ss_pred cCCCccchHHHHHHH---HHHHHHHHhcC-----CcEEEE-----EcchH--HHhcCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 4899 7999998665 23344555557 666665 33322 222333565544 556667778888888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 150 lDp~ 153 (395)
T 3i05_A 150 FDPE 153 (395)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7543
No 57
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.13 E-value=0.13 Score=40.05 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=37.8
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||..+.+. -+.+++ .. +++.+..| |.|++-. ...+++++ +++...+.+++.++|+
T Consensus 30 ~PTG~lHLGn~~g~l~--~~~~lQ--~~-----~~~~~~Ia-D~ha~~~------~~~~~e~i-~~~~~~~~~~~la~Gl 92 (351)
T 1yi8_B 30 RPTGALHLGHLAGSLQ--NRVRLQ--DE-----AELFVLLA-DVQALTD------HFDRPEQV-RENVLAVALDYLAAGL 92 (351)
T ss_dssp CCSSCCBHHHHHHTHH--HHHHHT--SS-----SEEEEEEC-HHHHHHH------HTTCHHHH-HHHHHHHHHHHHHHTC
T ss_pred CCCCCccHHHHHHHHH--HHHHHH--Hh-----CCeEEEEe-cchhhcC------CCCCHHHH-HHHHHHHHHHHHHhCC
Confidence 3899999999998642 122322 23 55544332 2232211 13555544 5555677788888988
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 93 dp~ 95 (351)
T 1yi8_B 93 DPQ 95 (351)
T ss_dssp CTT
T ss_pred Chh
Confidence 554
No 58
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=92.98 E-value=0.33 Score=41.16 Aligned_cols=71 Identities=8% Similarity=-0.155 Sum_probs=46.7
Q ss_pred CCCCCCCCcCcchHHHHHHHHHHHHHHHhh-cCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q psy6621 1 MYDCTEEELTCLGGVVVKTHSGAECRLAGI-NSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQL 79 (133)
Q Consensus 1 ~y~~~png~lHlGH~~~~~~~Dil~R~~r~-~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 79 (133)
||.| ++|.+||||+....- ++..|++. .| .+|.+..|-++. ..-.+.|.++ +-++++.....+++
T Consensus 386 ~~~p-s~g~lHLGh~v~~~k--~l~~~~~~~~g-----~~v~ilIaD~~A-----~i~d~~g~~~-e~i~~~~~y~~~~~ 451 (690)
T 3p0j_A 386 MWMP-ALLKVPLDVAEGMIK--VTKDFIAAHPE-----GTVTLVLPDWSA-----VASDEITGVE-KDISAALQVNCALL 451 (690)
T ss_dssp EECC-CCSSCBHHHHHHHHH--HHHHHHHHCSS-----CEEEEEECTTHH-----HHTTCTTCCH-HHHHHHHHHHHHHH
T ss_pred EecC-CCCCcccchHHHHHH--HHHHHHHHcCC-----CeEEEEEecchh-----hhCCCCCCCH-HHHHHHHHHHHHHH
Confidence 4677 899999999988643 25566665 36 788777765542 0011234554 44455667788889
Q ss_pred HhcCcc
Q psy6621 80 QGFGCK 85 (133)
Q Consensus 80 ~~lgi~ 85 (133)
..+|..
T Consensus 452 ~alG~d 457 (690)
T 3p0j_A 452 KAYGLP 457 (690)
T ss_dssp HHHTCC
T ss_pred HhcCCC
Confidence 999875
No 59
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=92.82 E-value=0.15 Score=39.74 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=39.5
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHh-hcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAG-INSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r-~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
.|||.+||||..+.+ .+|.+ ..+ +++.+..+ |.|.. -...+|++ ..++...+.+++.+.|
T Consensus 23 ~PTG~lHLGh~vg~l-----~~~~~lQ~~-----~~~~~~ia-D~hA~-------t~~~~~~~-~~~~~~~~~~~~lA~G 83 (346)
T 3n9i_A 23 QPSGELTIGNYMGAL-----RQWVQMQDD-----YDCIYCIV-DLHAI-------TARQDPAL-LRKRTLDTLALYLACG 83 (346)
T ss_dssp CSCSCCBHHHHHHTH-----HHHHTTTTT-----SEEEEEEC-HHHHT-------TSCCCHHH-HHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHH-----HHHHHHHhh-----CcEEEEEe-cceee-------cCCCCHHH-HHHHHHHHHHHHHHcC
Confidence 489999999998774 22323 236 77765543 33321 11345543 4555667778888889
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 84 lDp~ 87 (346)
T 3n9i_A 84 IDPK 87 (346)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8765
No 60
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=92.30 E-value=0.18 Score=39.23 Aligned_cols=69 Identities=4% Similarity=-0.067 Sum_probs=39.0
Q ss_pred CCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCc
Q psy6621 5 TEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
-|||.|||||....+ -.+.++++ .| +++.+..|=. |+. .....|.++++ ++++...+.+++.++|+
T Consensus 48 ~PTg~lHlGhyl~~l--~~~~~lQ~-~G-----~~~~~~i~D~-~a~----~~~~~~~~~e~-i~~~~~~~~~~~la~Gl 113 (348)
T 2j5b_A 48 EPSGRIHIAQALITV--MNTNNMIE-CG-----GQMIIYIADW-FAK----MNLKMNGDINK-IRELGRYFIEVFKACGI 113 (348)
T ss_dssp CCCSSCBHHHHHHHH--HHHHHHHH-TT-----EEEEEEECHH-HHH----HTTGGGGCHHH-HHHHHHHHHHHHHHTTC
T ss_pred CCCCCCchhHHHHHH--HHHHHHHH-cC-----CcEEEEeccc-hhh----hCCCCCCCHHH-HHHHHHHHHHHHHHhcC
Confidence 488999999943332 23555554 48 8876555422 111 01112234443 45566677777778887
Q ss_pred ccc
Q psy6621 85 KFN 87 (133)
Q Consensus 85 ~~d 87 (133)
..+
T Consensus 114 dp~ 116 (348)
T 2j5b_A 114 NLD 116 (348)
T ss_dssp CGG
T ss_pred Ccc
Confidence 654
No 61
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=92.21 E-value=0.12 Score=41.96 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=38.5
Q ss_pred CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|| |.|||||..+.+. +.+++...| ..|.+..|=.+ + ... ...++++ +.++...+.+++.++|
T Consensus 163 dPTag~LHLGh~v~~~~---~~~lQ~~~g-----~~~iilI~D~~-a--~ig----d~lt~e~-i~~n~~~~~~~~lA~G 226 (477)
T 1r6t_A 163 GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMTDDE-K--YLW----KDLTLDQ-AYGDAVENAKDIIACG 226 (477)
T ss_dssp CCCTTCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEECHHH-H--HHH----SSCCHHH-HHHHHHHHHHHHHTTC
T ss_pred cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEecce-e--eec----CCCCHHH-HHHHHHHHHHHHHHhC
Confidence 488 8999999998653 234444468 77655544322 0 000 1345444 4455555667777777
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 227 lDp~ 230 (477)
T 1r6t_A 227 FDIN 230 (477)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 62
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=92.11 E-value=0.53 Score=37.68 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=39.8
Q ss_pred CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|| |.|||||..+.+. +.+++...| ..+.+..| |.++. ......++.. +.++...+.+++.++|
T Consensus 110 dPTag~LHLGh~v~~~~---l~~lQ~~~g-----~~~i~lI~-D~ta~-----l~~~~~t~e~-i~~~~~~~~~~~lA~G 174 (432)
T 2ip1_A 110 GPSSDSMHLGHMIPFVF---TKWLQEVFD-----VPLVIELT-DDEKF-----LFKHKLTIND-VKNFARENAKDIIAVG 174 (432)
T ss_dssp CCCSSCCBGGGHHHHHH---HHHHHHHHT-----CCEEEEEC-HHHHH-----HHCTTCCHHH-HHHHHHHHHHHHHTTT
T ss_pred cCCCCCccHHHHHHHHH---HHHHHHHcC-----CeEEEEEe-cccce-----eCCCCCCHHH-HHHHHHHHHHHHHHhC
Confidence 489 8999999987653 334555478 87766666 22111 0111245443 4555556677777777
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 175 lDp~ 178 (432)
T 2ip1_A 175 FDPK 178 (432)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 7543
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=92.08 E-value=0.21 Score=42.32 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=38.8
Q ss_pred CCCCcCcchHHHHHHHHH-HHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEELTCLGGVVVKTHSG-AECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png~lHlGH~~~~~~~D-il~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|||.|||||. ++.- .+.+++ ..| ++|.+..| |-|++-. ...+.++++ ++++...+.+++.++|
T Consensus 48 ~PTg~lHLG~~---v~~~~~~~~lQ-~~G-----~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~lA~G 112 (690)
T 3p0j_A 48 EPSGRMHIAQG---IFKAVNVNKCT-AAG-----CEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVWKAAG 112 (690)
T ss_dssp CCCSCCBHHHH---HHHHHHHHHHH-HTT-----EEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHHHHTT
T ss_pred cCCCcchhHhh---HHHHHHHHHHH-HCC-----CcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHHHHcC
Confidence 48999999992 2222 244444 458 88876666 4444310 012333333 3445566677788888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 113 lDp~ 116 (690)
T 3p0j_A 113 MDMD 116 (690)
T ss_dssp CCGG
T ss_pred CChH
Confidence 7654
No 64
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=91.59 E-value=0.12 Score=40.93 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcC-CChHHHHHHHHHHHHHHHH
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHG-IDPREWTVGNIATMKSQLQ 80 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g-~~~~~~~~~~~~~~~~~l~ 80 (133)
-|||+ |||||... +. .+.++++ .| +++.+..|=.+ .|+|.-. .+.+. .++++ +.++...+..++.
T Consensus 72 dPTg~sLHlGhlv~-l~--~l~~lQ~-~G-----~~~~~lIgD~haligdpsgk-~~~R~~~~~e~-i~~n~~~i~~~~~ 140 (392)
T 1y42_X 72 DPTAPSLHVGHLLP-LM--PLFWMYL-EG-----YKAFTLIGGSTAKIGDPTGR-LKSRDHLSSSD-ATMNMTKIHYQLK 140 (392)
T ss_dssp CCCSSSCBGGGHHH-HH--HHHHHHH-HT-----CEEEEEECTTTTTTCCCCC------------C-HHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHH-HH--HHHHHHH-cC-----CcEEEEEcCceeEeCCCCCc-chhhccCCHHH-HHHHHHHHHHHHH
Confidence 48998 99999873 22 3555554 58 88776654322 1233211 11122 23333 3455566666666
Q ss_pred hcC
Q psy6621 81 GFG 83 (133)
Q Consensus 81 ~lg 83 (133)
+++
T Consensus 141 a~~ 143 (392)
T 1y42_X 141 KLW 143 (392)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 65
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.42 E-value=0.13 Score=40.99 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
-|||+ |||||... + -.+.++++ .| +++.+..|=.+ .|+|.-...++.-.++++ +.++...+.+++.+
T Consensus 40 dPTg~sLHlGh~v~-l--~~~~~lQ~-~G-----~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~-i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 40 DPTADSLHIGHLLP-F--LTLRRFQE-HG-----HRPIVLIGGGTGMIGDPSGKSEERVLQTEEQ-VDKNIEGISKQMHN 109 (420)
T ss_dssp CCSSSSCBHHHHHH-H--HHHHHHHH-TT-----CEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHH-H--HHHHHHHH-CC-----CcEEEEEcCceeEecCCCccccccccCCHHH-HHHHHHHHHHHHHH
Confidence 48998 99999773 2 23555554 58 88876665433 233311101111124444 45666777777777
Q ss_pred c
Q psy6621 82 F 82 (133)
Q Consensus 82 l 82 (133)
+
T Consensus 110 ~ 110 (420)
T 1jil_A 110 I 110 (420)
T ss_dssp H
T ss_pred H
Confidence 6
No 66
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=88.80 E-value=1 Score=35.76 Aligned_cols=67 Identities=6% Similarity=-0.044 Sum_probs=38.9
Q ss_pred CCCC-cCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEEE-LTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~png-~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
.||| .|||||..+.. .+.++++..| ..|.+..| |.| +......+++++ +++...+.+++.++|
T Consensus 109 ~PTg~~lHLGh~v~~~---~~~~lQ~~~g-----~~~~i~Ia-D~~------a~l~~~~~~e~i-~~~~~~~~~~~lA~G 172 (406)
T 3tze_A 109 GPSSKTMHIGHTIPFL---LCKYMQDAFK-----IRLVIQIT-DDE------KFLWKSMRLEDA-MAYGRENIKDIVTLG 172 (406)
T ss_dssp CCCSSCCBGGGHHHHH---HHHHHHHHHT-----CCEEEEEC-HHH------HHHHSSCCHHHH-HHHHHHHHHHHHTTT
T ss_pred CCCCCcccHHHHHHHH---HHHHHHHhcC-----CcEEEEee-ChH------HHcCCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 4898 79999977652 2333444447 66655322 222 111123555444 555667778888888
Q ss_pred cccc
Q psy6621 84 CKFN 87 (133)
Q Consensus 84 i~~d 87 (133)
+..+
T Consensus 173 lDp~ 176 (406)
T 3tze_A 173 FDPK 176 (406)
T ss_dssp CCGG
T ss_pred CCcc
Confidence 8654
No 67
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=87.97 E-value=0.44 Score=36.59 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=21.8
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG 45 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G 45 (133)
-|||. |||||... + -.+.+++ ..| +++.+..|
T Consensus 41 ~PTg~slHlGh~l~-l--~~~~~lQ-~~g-----~~~~~~i~ 73 (322)
T 2yxn_A 41 DPTADSLHLGHLVP-L--LCLKRFQ-QAG-----HKPVALVG 73 (322)
T ss_dssp CCSSSSCBHHHHHH-H--HHHHHHH-HTT-----CEEEEEEC
T ss_pred cCCCCcccHHHHHH-H--HHHHHHH-HcC-----CcEEEEEc
Confidence 48998 99999773 2 2345554 458 88876665
No 68
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=86.90 E-value=1.3 Score=35.50 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=22.1
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW 46 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~ 46 (133)
-|||+ |||||... --.+.+++. .| +++.+..|=
T Consensus 45 dPTg~sLHlGh~v~---l~~l~~lQ~-~G-----~~~i~lIgD 78 (432)
T 1h3f_A 45 DPTRPDLHLGHAVV---LRKMRQFQE-LG-----HKVVLIIGD 78 (432)
T ss_dssp CTTCCSCBHHHHHH---HHHHHHHHH-TT-----CEEEEEECC
T ss_pred cCCCCCCchhhHHH---HHHHHHHHH-CC-----CCEEEEEcc
Confidence 38985 99999873 233555554 58 887766553
No 69
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=86.69 E-value=0.47 Score=38.12 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=36.6
Q ss_pred CCC-CcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q psy6621 5 TEE-ELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFG 83 (133)
Q Consensus 5 ~pn-g~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 83 (133)
-|| |.|||||..+.+. +.+++...| ..+.+..|=.+ +. .. ...++++ +.++...+.+++.++|
T Consensus 116 dPTag~LHLGh~v~~~~---~~~lQ~~~G-----~~~iilIgD~t-a~--ig----d~lt~e~-i~~n~~~~~~~~lA~G 179 (437)
T 1r6u_A 116 GPSSEAMHVGHLIPFIF---TKWLQDVFN-----VPLVIQMTDDE-KY--LW----KDLTLDQ-AYGDAVENAKDIIACG 179 (437)
T ss_dssp CCCSSCCBHHHHHHHHH---HHHHHHHHT-----CCEEEEECHHH-HH--HH----SSCCHHH-HHHHHHHHHHHHHTTT
T ss_pred cCCCCCccHHHHHHHHH---HHHHHHHhC-----CcEEEEEecce-ee--ec----CCCCHHH-HHHHHHHHHHHHHHhC
Confidence 388 8999999997653 334444468 77655544321 00 00 1344444 3444445566666677
Q ss_pred ccc
Q psy6621 84 CKF 86 (133)
Q Consensus 84 i~~ 86 (133)
+..
T Consensus 180 lDp 182 (437)
T 1r6u_A 180 FDI 182 (437)
T ss_dssp CCG
T ss_pred CCc
Confidence 654
No 70
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=86.55 E-value=0.52 Score=37.59 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCC--CCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDA--FGLPAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~--~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
-|||+ |||||... + -.+.++++ .| +++.+..|=.+ .|+|.-...++.-.++++ +.++...+++++..
T Consensus 38 dPTg~sLHlGh~v~-l--~~l~~lQ~-~G-----~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 38 DPTADSLHIGHLAT-I--LTMRRFQQ-AG-----HRPIALVGGATGLIGDPSGKKSERTLNAKET-VEAWSARIKEQLGR 107 (419)
T ss_dssp CCSSSSCBGGGHHH-H--HHHHHHHH-TT-----CEEEEEECTTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHHH-H--HHHHHHHH-CC-----CcEEEEEcCceeEecCCCCccccccCCCHHH-HHHHHHHHHHHHHH
Confidence 38998 99999773 2 23555554 68 88876665433 123311000111123333 34556666666555
Q ss_pred c
Q psy6621 82 F 82 (133)
Q Consensus 82 l 82 (133)
+
T Consensus 108 ~ 108 (419)
T 2ts1_A 108 F 108 (419)
T ss_dssp S
T ss_pred H
Confidence 3
No 71
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=85.92 E-value=0.61 Score=36.34 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=21.8
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccC
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGW 46 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~ 46 (133)
-|||+ |||||+. .+.. +.++++ .| +++.+..|=
T Consensus 54 ~PTg~sLHLGhl~-~l~~--~~~lQ~-~G-----~~~~~lIaD 87 (356)
T 2pid_A 54 DPTADSLHVGHLL-ALLG--LFHLQR-AG-----HNVIALVGG 87 (356)
T ss_dssp CCSSSSCBHHHHH-HHHH--HHHHHH-TT-----CEEEEEECT
T ss_pred cCCCCcccHHHHH-HHHH--HHHHHH-CC-----CcEEEEEcc
Confidence 48996 9999944 3333 555554 58 888766553
No 72
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=85.28 E-value=0.66 Score=37.18 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=21.4
Q ss_pred CCCCc-CcchHHHHHHHHHHHHHHHhhcCCCCCCceeeeccc
Q psy6621 5 TEEEL-TCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMG 45 (133)
Q Consensus 5 ~png~-lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G 45 (133)
-|||+ |||||+. .+. .+.++++ .| +++.+..|
T Consensus 40 dPTg~sLHLGhlv-~l~--~l~~lQ~-~G-----~~~i~lIg 72 (432)
T 2jan_A 40 DPTAPSLHAGHLV-PLL--TLRRFQR-AG-----HRPIVLAG 72 (432)
T ss_dssp CCSSSSCBGGGHH-HHH--HHHHHHH-TT-----CEEEEEEC
T ss_pred CCCCCCcCHHHHH-HHH--HHHHHHH-CC-----CcEEEEEc
Confidence 48995 9999944 333 3556554 58 88876654
No 73
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=83.46 E-value=0.7 Score=28.02 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeecccCCCC------CHHHHHHHHHcCCChHHHHHHHHHHH
Q psy6621 18 KTHSGAECRLAGINSIIKGPVRVFQPMGWDAF------GLPAENAAHQHGIDPREWTVGNIATM 75 (133)
Q Consensus 18 ~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~------G~~i~~~a~~~g~~~~~~~~~~~~~~ 75 (133)
.+++|++.+|-+. -+|+.-.|+||. +.+++.+++..|+++.++.++..+.+
T Consensus 7 ~tI~eIv~~~P~~-------~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 7 MIIADVLQMDRGT-------APIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYF 63 (76)
T ss_dssp SBHHHHHHHCGGG-------HHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHCHHH-------HHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3567777765433 335556666662 35678899999999988766555443
No 74
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=78.14 E-value=0.74 Score=27.65 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCCCCCceeeecccCCCC---C---HHHHHHHHHcCCChHHHHHHHHHHH
Q psy6621 19 THSGAECRLAGINSIIKGPVRVFQPMGWDAF---G---LPAENAAHQHGIDPREWTVGNIATM 75 (133)
Q Consensus 19 ~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~---G---~~i~~~a~~~g~~~~~~~~~~~~~~ 75 (133)
+++|++.+|-+.. +|+.-.|+||. | .+++.++...|+++.++.++..+.+
T Consensus 10 tI~eiv~~~P~~~-------~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~ 65 (73)
T 2k5e_A 10 TFAQALQTHPGVA-------GVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALA 65 (73)
T ss_dssp BHHHHHHHCTHHH-------HHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHCHHHH-------HHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4666666653332 24444555533 3 4567888999999988866655443
No 75
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=59.82 E-value=16 Score=26.88 Aligned_cols=52 Identities=13% Similarity=0.327 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhcC---cccccCCceecCChhHHHHHHHHHHHHHHCCCe
Q psy6621 65 REWTVGNIATMKSQLQGFG---CKFNWESELATCDPKYYKWTQALFLDLYHAGLV 116 (133)
Q Consensus 65 ~~~~~~~~~~~~~~l~~lg---i~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~i 116 (133)
.+..+.+++.+.+.++..| |.+||+.+.......|...++++-..|.+++++
T Consensus 100 ~~~r~~fi~si~~~l~~~gfDGiDiDwE~p~~~d~~~~~~ll~eLr~~l~~~~~l 154 (275)
T 3sim_A 100 DSWVSNAVTSLTRIIQRYNLDGIDIDYEHFQNTDKNTFAECIGRLITTLKKNGVI 154 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeecCCcccHHHHHHHHHHHHHHhccCCeE
Confidence 4555677777777777775 456788764334456777888887788887764
No 76
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Probab=57.90 E-value=18 Score=27.05 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
.+.+++.+.+.++.. ||.+||+.+.......|..+++++=.+|.++|++-
T Consensus 96 r~~fi~si~~~~~~~gfDGiDiDwE~p~~~d~~~~~~ll~eLr~~l~~~~~~L 148 (319)
T 3cz8_A 96 RTNLVNNIYDLVSTRGYGGVTIDFEQVSAADRDLFTGFLRQLRDRLQAGGYVL 148 (319)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEECCSCCGGGHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 345555555555555 55678987754444577778888877787777644
No 77
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=51.61 E-value=18 Score=16.77 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=15.9
Q ss_pred cchHHHH-HHHHHHHHHHHh
Q psy6621 11 CLGGVVV-KTHSGAECRLAG 29 (133)
Q Consensus 11 HlGH~~~-~~~~Dil~R~~r 29 (133)
|+|-.++ +++.|.+.+++.
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 8899996 788999988765
No 78
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=49.84 E-value=33 Score=20.88 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=30.9
Q ss_pred CCCCCCCcCcchHHHHHHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHH-------HHHH
Q psy6621 2 YDCTEEELTCLGGVVVKTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVG-------NIAT 74 (133)
Q Consensus 2 y~~~png~lHlGH~~~~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~-------~~~~ 74 (133)
++++|.+.-|+---....+++-|.+.+..+| .. .+..|++.|+++..+..- ....
T Consensus 11 ~~~~~~~~~~M~~~~~~~ig~~lr~~R~~~g-----lt-------------q~elA~~~gis~~~is~iE~G~~~ps~~~ 72 (99)
T 3g5g_A 11 SSGLVPRGSHMESFLLSKVSFVIKKIRLEKG-----MT-------------QEDLAYKSNLDRTYISGIERNSRNLTIKS 72 (99)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHTT-----CC-------------HHHHHHHHTCCHHHHHHHHTTCSCCBHHH
T ss_pred cCCCCCccccccHHHHHHHHHHHHHHHHHcC-----CC-------------HHHHHHHHCcCHHHHHHHHCCCCCCCHHH
Confidence 3566777777754445566777777777777 22 234455566665433221 1244
Q ss_pred HHHHHHhcCcccc
Q psy6621 75 MKSQLQGFGCKFN 87 (133)
Q Consensus 75 ~~~~l~~lgi~~d 87 (133)
+.+..+.||+..+
T Consensus 73 l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 73 LELIMKGLEVSDV 85 (99)
T ss_dssp HHHHHHHTTCCHH
T ss_pred HHHHHHHHCcCHH
Confidence 5556666776554
No 79
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=49.00 E-value=16 Score=20.92 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHCCCeEE
Q psy6621 101 KWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~ 118 (133)
+.|..++++|.+||+|-.
T Consensus 40 deV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 40 QEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCeec
Confidence 468889999999999864
No 80
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=47.06 E-value=5.5 Score=24.05 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeecccCCCCCHHH-----------HHHHHHcCCChHHH
Q psy6621 18 KTHSGAECRLAGINSIIKGPVRVFQPMGWDAFGLPA-----------ENAAHQHGIDPREW 67 (133)
Q Consensus 18 ~~~~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i-----------~~~a~~~g~~~~~~ 67 (133)
.+++|++.+|=.. .+|+.-.|+++.|.|. +.+|+.+|+++.++
T Consensus 13 ~~I~elv~~~P~~-------~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l 66 (81)
T 2fi0_A 13 IPVAEVVDKHPEV-------LEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKI 66 (81)
T ss_dssp SBHHHHHHHCGGG-------HHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHCHHH-------HHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHH
Confidence 4677888776433 4467777888886655 34556667776544
No 81
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=41.19 E-value=37 Score=19.57 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCeEEec--eeeeecC
Q psy6621 101 KWTQALFLDLYHAGLVYRKE--VDYSQNL 127 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~--~~v~~~~ 127 (133)
..+..++.+|.++|+|.+.. +...|+|
T Consensus 42 ~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 42 KTIQTMLLRLIKKGALNHHKEGRVFVYTP 70 (82)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence 46888999999999998643 3445544
No 82
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=40.54 E-value=24 Score=20.04 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeeec
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQN 126 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (133)
..|+..+..|.+.|+|.. ....+|.
T Consensus 40 ~tv~~~l~~L~~~G~I~~-~~~G~y~ 64 (67)
T 2heo_A 40 KTLNQVLYRLKKEDRVSS-PSPKYWS 64 (67)
T ss_dssp HHHHHHHHHHHHTTSEEE-EETTEEE
T ss_pred HHHHHHHHHHHHCCcEec-CCCceEe
Confidence 579999999999999865 4335554
No 83
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=40.53 E-value=51 Score=24.21 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+ .....-...+++.+.+|.++|.|-.
T Consensus 107 ~~i~~~~e~SL~rLg~dyiDl~~lH~p--~~~~~~~~e~~~al~~l~~~Gkir~ 158 (283)
T 3o0k_A 107 ESTLKAFDTSLKKLGTDYVDLYLIHWP--MPSKDLFMETWRAFIKLKEEGRVKS 158 (283)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECCS--CSCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCceeEEEECCC--CCCcccHHHHHHHHHHHHHCCCcce
Confidence 456788899999999853 41 111 1111123567788999999999853
No 84
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome, secreted, hydrolase; 2.70A {Homo sapiens}
Probab=38.30 E-value=52 Score=25.46 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhc---Ccccc-cCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 68 TVGNIATMKSQLQGF---GCKFN-WESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d-~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
.+.+++.+.+.++.. ||.+| |+.+.......|..+++++=.+|.++|+.-.
T Consensus 170 R~~fi~siv~~~~~~gfDGidiDfWE~p~~~d~~~~~~ll~eLr~~l~~~~~~Ls 224 (393)
T 3bxw_B 170 IEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLAL 224 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECGGGCCC-CHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEecccccCChhhHHHHHHHHHHHHHHHhhcCcEEE
Confidence 345566666666655 55678 8776555556788888888888888887543
No 85
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=37.45 E-value=58 Score=20.26 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHCCCeEEecee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~ 122 (133)
.|.+.+..|.+.|+|....+.
T Consensus 49 tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 49 TVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHCCCEEEecCC
Confidence 477777888888887765443
No 86
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=36.76 E-value=59 Score=20.68 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHCCCeEEecee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~ 122 (133)
.|.+++..|.+.|+|+...+.
T Consensus 53 tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 53 TVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHCCeEEEecCC
Confidence 578888888888888876543
No 87
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.67 E-value=60 Score=20.80 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCeEEeceee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDY 123 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v 123 (133)
.|.+++..|...|+|+...+.-
T Consensus 54 tVReAl~~L~~eGlv~~~~g~G 75 (134)
T 4ham_A 54 TVSKAYQELERQEVIITVKGKG 75 (134)
T ss_dssp HHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHHHHCCcEEEEcCcE
Confidence 5889999999999998765443
No 88
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=34.23 E-value=64 Score=23.63 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+ .....-...+++.+.+|.++|.|-.
T Consensus 92 ~~v~~~~~~SL~rL~~dyiDl~llH~p--~~~~~~~~e~~~al~~l~~~Gkir~ 143 (283)
T 2wzm_A 92 TSSQAAARASLERLGLDYVDLYLIHWP--GGDTSKYVDSWGGLMKVKEDGIARS 143 (283)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECCC--TTCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCEeEEEEcCC--CCCCCCHHHHHHHHHHHHHcCCccE
Confidence 556788899999999853 41 111 1111123467788999999999854
No 89
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=33.95 E-value=70 Score=23.75 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+ ++.....+++.+.+|.++|.|-.
T Consensus 126 ~~~~~~~e~SL~rL~~dyiDL~~~H~~----~~~~~~e~~~al~~l~~~Gkir~ 175 (314)
T 3b3d_A 126 EETLAAFETSLSKLGLDYLDLYLIHWP----VEGKYKEAWRALETLYKEGRIKA 175 (314)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSC----CTTTHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcccccccccc----cccchhHHHHHHHHHHHCCCEeE
Confidence 345677889999999864 41 111 11223456778999999999753
No 90
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=33.61 E-value=41 Score=20.10 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCeEE-eceeeeec
Q psy6621 101 KWTQALFLDLYHAGLVYR-KEVDYSQN 126 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~-~~~~v~~~ 126 (133)
..|...+.+|.+.|+|.+ +.++..|.
T Consensus 42 ~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 42 KEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 468899999999999986 34445554
No 91
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.45 E-value=41 Score=19.76 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCeEEe-ceeeeec
Q psy6621 101 KWTQALFLDLYHAGLVYRK-EVDYSQN 126 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~-~~~v~~~ 126 (133)
..|...+.+|.++|+|.+. .++..|.
T Consensus 46 ~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 46 KEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 4688899999999999873 4444443
No 92
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB: 2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A* 2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A* 2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Probab=32.36 E-value=42 Score=25.44 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHHHCCC
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~ 115 (133)
.+.+++.+.+.++.. ||.+||+.+.......|..+++++=.+|-+.|.
T Consensus 95 r~~fi~si~~~~~~~~fDGiDiDwE~p~~~d~~~~~~ll~eLr~~l~~~~~ 145 (361)
T 2pi6_A 95 RRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKRHLTTLVKEMKAEFIREAQ 145 (361)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEECSCCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeeecCCchHHHHHHHHHHHHHHHHhhhhc
Confidence 345555556666555 456789877544335677777777777766553
No 93
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5
Probab=31.96 E-value=92 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhcC---------cccccCCceecCChhHHHHHHHHHHHHHHCCC
Q psy6621 67 WTVGNIATMKSQLQGFG---------CKFNWESELATCDPKYYKWTQALFLDLYHAGL 115 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lg---------i~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~ 115 (133)
..+.+++.+.+.++..| |.+||+.+- .+..|..+++++=.+|-+.|.
T Consensus 101 ~r~~f~~s~~~~~~~~g~~~~~~fDGiDiDwE~p~--~d~~~~~ll~~Lr~~l~~~~~ 156 (290)
T 1nar_A 101 WVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIR--SDEPFATLMGQLITELKKDDD 156 (290)
T ss_dssp HHHHHHHHHHHHHHHSEETTEECCCEEEEEESCBC--SSTTHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhCCCcCCccceEEEeccCCC--ChHHHHHHHHHHHHHhhhccC
Confidence 34566777777777777 567887753 337788888888778877775
No 94
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=31.93 E-value=63 Score=23.94 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCccc-ccCCceecCChh-HHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NWESELATCDPK-YYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~~~~~~T~~~~-~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.-+.|. -...+++.+.+|.++|.|-.
T Consensus 100 ~~v~~~~~~SL~rLg~dyiDl---~llH~p~~~~~e~~~al~~l~~~Gkir~ 148 (298)
T 1vp5_A 100 ESTKKAFEKSLKKLQLEYIDL---YLIHQPFGDVHCAWKAMEEMYKDGLVRA 148 (298)
T ss_dssp HHHHHHHHHHHHHHTCSCEEE---EEECSSCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEE---EEecCCCCCHHHHHHHHHHHHHcCCccE
Confidence 456788899999999853 41 1111111 13567788999999999854
No 95
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=31.88 E-value=84 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. +.+-.. .| .+.+.+.+.+|.++|.|-
T Consensus 101 ~~i~~~~~~SL~rLg~dyiDl~~lH~p~~~-~~--~~e~~~al~~l~~~Gkir 150 (333)
T 1pz1_A 101 ARIVEEVENSLKRLQTDYIDLYQVHWPDPL-VP--IEETAEVMKELYDAGKIR 150 (333)
T ss_dssp HHHHHHHHHHHHHTTSSCBSEEEECSCCTT-SC--HHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCceeEEEecCCCCC-CC--HHHHHHHHHHHHHCCcCC
Confidence 456788899999999853 41 111111 11 346778899999999874
No 96
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=31.50 E-value=62 Score=24.00 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC----------------ChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC----------------DPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~----------------~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. +.+.... +..-...+++.+.+|.++|.|-
T Consensus 94 ~~v~~~~~~SL~rL~~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~al~~l~~~Gkir 162 (324)
T 3ln3_A 94 ELVXPALEXSLXXLQLDYVDLYIMHYPVPMXSGDNDFPVNEQGXSLLDTVDFCDTWERLEECXDAGLVX 162 (324)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCSCCBCCSSCSSCBCTTCCBCBCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCcceEEEEecCccccccccccccccccccccccCCHHHHHHHHHHHHhcCCee
Confidence 456788899999999753 41 1111100 0001356778899999999985
No 97
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=31.43 E-value=71 Score=24.03 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-... -.+.+++.+.+|.++|.|-.
T Consensus 122 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~---~~~e~~~al~~l~~~Gkir~ 172 (348)
T 3n2t_A 122 ARIRKEVEDSLRRLRVETIDLEQIHWPDDKT---PIDESARELQKLHQDGKIRA 172 (348)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESSCCTTS---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecCCCCCC---CHHHHHHHHHHHHHhCcceE
Confidence 456788899999999853 41 1111111 13567788999999999854
No 98
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=31.14 E-value=92 Score=23.14 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. ..+-... + .+.+++.+.+|.++|.|-
T Consensus 125 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~-~--~~e~~~al~~l~~~Gkir 174 (319)
T 1ur3_M 125 DHIIKSAEQSLINLATDHLDLLLIHRPDPLM-D--ADEVADAFKHLHQSGKVR 174 (319)
T ss_dssp HHHHHHHHHHHHHHTCSCBSEEEECSCCTTC-C--HHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEecCCCCCC-C--HHHHHHHHHHHHHCCCcc
Confidence 456788999999999853 41 1211111 1 356778899999999975
No 99
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=31.11 E-value=53 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
....+.+..|.++|++|.+.
T Consensus 78 sifKeAi~~Lqe~G~VfqK~ 97 (120)
T 1wj5_A 78 RVFKNALQLLQEKGLVFQRD 97 (120)
T ss_dssp HHHHHHHHHHHHHTSEECSS
T ss_pred HHHHHHHHHHHHCCEEEecc
Confidence 44457778899999999886
No 100
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=30.52 E-value=69 Score=23.28 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+.. . -...+++.+.+|.++|.|-.
T Consensus 88 ~~v~~~~~~SL~rLg~dyiDl~~lH~p~~--~--~~~~~~~~l~~l~~~Gkir~ 137 (276)
T 3f7j_A 88 ETTLAAFEKSLERLQLDYLDLYLIHWPGK--D--KYKDTWRALEKLYKDGKIRA 137 (276)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCCCS--S--SHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEEecCCC--C--cHHHHHHHHHHHHHcCCccE
Confidence 456788899999999853 41 22111 1 14567788999999999853
No 101
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=30.32 E-value=78 Score=20.33 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHCCCeEEecee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~ 122 (133)
.|.+.+..|.+.|+|+...+.
T Consensus 44 tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 44 TARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHHCCcEEEecCC
Confidence 467777777777777765443
No 102
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=29.77 E-value=99 Score=18.95 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=31.3
Q ss_pred ceeeecccCCCCCHHHHHHH-H---HcC-------------CChHHHHHHHHHHHHHHHHhcCc
Q psy6621 38 VRVFQPMGWDAFGLPAENAA-H---QHG-------------IDPREWTVGNIATMKSQLQGFGC 84 (133)
Q Consensus 38 ~~V~~~~G~D~~G~~i~~~a-~---~~g-------------~~~~~~~~~~~~~~~~~l~~lgi 84 (133)
.+|.+.+++|+|+..+-.+. + +.| +.-.+...+..+.+.+++..++.
T Consensus 3 KEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ 66 (89)
T 1i96_V 3 KSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAV 66 (89)
T ss_pred eEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheE
Confidence 57889999999998764332 2 222 12256677777788887777654
No 103
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=29.69 E-value=64 Score=23.90 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-... -.+.+.+.+.+|.++|.|-.
T Consensus 100 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~~---~~~e~~~al~~l~~~Gkir~ 150 (327)
T 3eau_A 100 KHIIEGLKASLERLQLEYVDVVFANRPDPNT---PMEETVRAMTHVINQGMAMY 150 (327)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTS---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEEeCCCCCC---CHHHHHHHHHHHHHcCCeeE
Confidence 455778899999999753 41 1111111 13457788999999999853
No 104
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=29.69 E-value=70 Score=23.67 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+-... ..+.+++.+.+|.++|.|-.
T Consensus 104 ~~i~~~~e~SL~rLg~dyiDl~llH~p~~~~---~~~e~~~al~~l~~~Gkir~ 154 (298)
T 3up8_A 104 DAFIASVDESLRKLRTDHVDLLLLHWPGSDV---PMAERIGALNEVRNAGKVRH 154 (298)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEESCSCCSS---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccCCCCC---CHHHHHHHHHHHHHcCCccE
Confidence 456778899999999853 41 2221111 23567788999999999753
No 105
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=29.59 E-value=71 Score=23.79 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+.. . -...+++.+.+|.++|.|-.
T Consensus 122 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~--~--~~~e~~~al~~l~~~Gkir~ 171 (310)
T 3b3e_A 122 ETTLAAFEKSLERLQLDYLDLYLIHWPGK--D--KYKDTWRALEKLYKDGKIRA 171 (310)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCCCS--S--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEeeCCCc--c--cHHHHHHHHHHHHHcCCcce
Confidence 456778899999999853 41 11111 1 14567888999999999853
No 106
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=29.49 E-value=87 Score=23.10 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC----------C------hhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC----------D------PKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~----------~------~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||+.. |. +.+.... + ..-...+++.+.+|.++|.|-
T Consensus 87 ~~v~~~~~~SL~rL~~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ale~l~~~Gkir 155 (316)
T 1us0_A 87 GLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVK 155 (316)
T ss_dssp HHHHHHHHHHHHHHTCSCBSEEEESSSCCBCCSSCSSCBCTTSCBCBCSCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCceeeEEEecCccccccccccccccccccccccccHHHHHHHHHHHHHCCCcc
Confidence 456788899999999853 41 1211100 0 001356778899999999874
No 107
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=29.49 E-value=2.2e+02 Score=23.76 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCCCCCceeeecccCCCCCHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHH
Q psy6621 21 SGAECRLAGINSIIKGPVRVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYY 100 (133)
Q Consensus 21 ~Dil~R~~r~~G~~~~~~~V~~~~G~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~ 100 (133)
+++++++++..| ++|...-+... ..+..++++.+.+. .+ ..+.+..|.
T Consensus 527 a~~va~~l~~aG-----feVi~~g~~~t--ee~v~aa~e~~adi-----------------v~--------lSsl~~~~~ 574 (637)
T 1req_B 527 EGFSSPVWHIAG-----IDTPQVEGGTT--AEIVEAFKKSGAQV-----------------AD--------LCSSAKVYA 574 (637)
T ss_dssp HHHHHHHHHHTT-----CBCCEEECCCH--HHHHHHHHHHTCSE-----------------EE--------EECCHHHHH
T ss_pred HHHHHHHHHhCC-----eeEEeCCCCCC--HHHHHHHHhcCCCE-----------------EE--------EecccHHHH
Confidence 567777788888 88866644443 44444444444321 11 123344566
Q ss_pred HHHHHHHHHHHHCCC
Q psy6621 101 KWTQALFLDLYHAGL 115 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~ 115 (133)
..+..+++.|.++|.
T Consensus 575 ~~~~~v~~~Lk~aG~ 589 (637)
T 1req_B 575 QQGLEVAKALKAAGA 589 (637)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 667777777777776
No 108
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=29.29 E-value=53 Score=20.29 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCeEEe
Q psy6621 101 KWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~ 119 (133)
..|..++.+|.++|+|.+.
T Consensus 68 sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 68 ATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp HHHHHHHHHHHHTTSCEEE
T ss_pred hhHHHHHHHHHHCCCEEEE
Confidence 4688999999999999874
No 109
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=28.93 E-value=79 Score=23.64 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-.. .| .+.+.+.+.+|.++|.|-.
T Consensus 114 ~~i~~~~e~SL~rL~~dyiDl~~lH~p~~~-~~--~~e~~~al~~l~~~Gkir~ 164 (346)
T 3n6q_A 114 KYLLASLDQSLKRMGLEYVDIFYSHRVDEN-TP--MEETASALAHAVQSGKALY 164 (346)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCTT-SC--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEeEEEEeCCCCC-CC--HHHHHHHHHHHHHcCCeeE
Confidence 456788889999999743 41 111111 11 3557788999999999853
No 110
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=28.88 E-value=90 Score=23.07 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-.. .+ .+.+.+.+.+|.++|.|-.
T Consensus 85 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~-~~--~~e~~~al~~l~~~Gkir~ 135 (327)
T 1gve_A 85 ADVRFQLETSLKRLQCPRVDLFYLHFPDHG-TP--IEETLQACHQLHQEGKFVE 135 (327)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEEEECSCCTT-SC--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHCCCeEeEEEecCCCCC-CC--HHHHHHHHHHHHhCCceeE
Confidence 456788999999999853 51 221111 11 3467788999999999854
No 111
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=28.37 E-value=32 Score=15.90 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=13.8
Q ss_pred cchHHHH-HHHHHHHHHHH
Q psy6621 11 CLGGVVV-KTHSGAECRLA 28 (133)
Q Consensus 11 HlGH~~~-~~~~Dil~R~~ 28 (133)
|+|-.++ .++.|.+.+++
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 7888886 67788877654
No 112
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=28.24 E-value=88 Score=23.37 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-... + .+.+++.+.+|.++|.|-.
T Consensus 102 ~~i~~~~~~SL~rLg~dyiDl~~lH~p~~~~-~--~~e~~~al~~l~~~Gkir~ 152 (337)
T 3v0s_A 102 DYVRSCCEASLKRLDVDYIDLFYIHRIDTTV-P--IEITMGELXXLVEEGKIXY 152 (337)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTS-C--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEecCCCCCC-C--HHHHHHHHHHHHHCCCeeE
Confidence 456788889999999853 41 1111111 1 3567888999999999753
No 113
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=27.87 E-value=1.1e+02 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 68 TVGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 68 ~~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
.+...+.+.+.|++||... |. +.+- .. -...+++.+.+|.++|.|-
T Consensus 90 ~~~v~~~~~~SL~rL~~dyiDl~~lH~p~--~~--~~~~~~~al~~l~~~Gkir 139 (281)
T 1vbj_A 90 YESTLSAFEKSIKKLGLEYVDLYLIHWPG--KD--KFIDTWKAFEKLYADKKVR 139 (281)
T ss_dssp HHHHHHHHHHHHHHHTCSCBSEEEESCCC--SS--CHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEcCCC--CC--CHHHHHHHHHHHHHCCCcc
Confidence 3566788999999999853 51 1111 11 1346778899999999874
No 114
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=27.58 E-value=49 Score=24.98 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHH
Q psy6621 69 VGNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLY 111 (133)
Q Consensus 69 ~~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~ 111 (133)
+.+++.+.+.++.. ||.+||+.+.....+.+...++++-..|.
T Consensus 97 ~~Fi~siv~~~~~~~fDGiDiDWEyP~~~d~~~~~~ll~elr~~~~ 142 (365)
T 4ay1_A 97 LEFINSIILFLRNHNFDGLDVSWIYPDQKENTHFTVLIHELAEAFQ 142 (365)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeeecCCcccccccHHHHHHHHHHHH
Confidence 44555555555555 56678988755444566666666654443
No 115
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=27.47 E-value=83 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC----ChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC----DPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~----~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+.... +..-...+++.+.+|.++|.|-.
T Consensus 92 ~~i~~~~~~SL~rLg~dyiDl~llH~p~~~~~~~~~~~~~~e~~~al~~l~~~Gkir~ 149 (288)
T 4f40_A 92 ESTLAAFEESRQKLGVDYIDLYLIHWPRGKDILSKEGKKYLDSWRAFEQLYKEKKVRA 149 (288)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEecCCCCcccccccccHHHHHHHHHHHHHcCCccE
Confidence 456778899999999853 41 1111000 00113456788999999999753
No 116
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=27.15 E-value=66 Score=23.84 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCC------hhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCD------PKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~------~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. +.+..... ..-...+++.+.+|.++|.|-
T Consensus 90 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~~~~~~~~~~e~~~al~~l~~~Gkir 148 (317)
T 1qwk_A 90 GKLEGGLRESLKKLQLEYVDLYLAHMPAAFNDDMSEHIASPVEDVWRQFDAVYKAGLAK 148 (317)
T ss_dssp TTHHHHHHHHHHHHTCSCBSEEEESCSCEECTTSCSEECCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEeccCccccccccccCCCHHHHHHHHHHHHHcCCee
Confidence 345778889999999853 41 11111000 001356778899999999974
No 117
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=26.91 E-value=64 Score=23.49 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+..... -...+++.+.+|.++|.|-.
T Consensus 84 ~~v~~~~~~SL~rLg~dyiDl~llH~p~~~~~--~~~e~~~al~~l~~~Gkir~ 135 (278)
T 1hw6_A 84 DEPAAAIAESLAKLALDQVDLYLVHWPTPAAD--NYVHAWEKMIELRAAGLTRS 135 (278)
T ss_dssp -CHHHHHHHHHHHHTCSCEEEEEECCCCTTCS--SHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCC--CHHHHHHHHHHHHHcCCccE
Confidence 456788899999999853 51 22211111 13567788999999999854
No 118
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.87 E-value=64 Score=19.91 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 43 ~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 43 KTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHCCceEEEe
Confidence 46888999999999998753
No 119
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=26.50 E-value=77 Score=16.62 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 52 PAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 52 ~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
.+...|++.|++..+++.+.+..+.+.
T Consensus 23 ~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 23 RLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345667778888888888777776654
No 120
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=25.94 E-value=1.2e+02 Score=22.17 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. +.+-.. .| .+.+.+.+.+|.++|.|-
T Consensus 101 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~-~~--~~e~~~al~~l~~~Gkir 150 (312)
T 1pyf_A 101 DFLKKSVDESLKRLNTDYIDLFYIHFPDEH-TP--KDEAVNALNEMKKAGKIR 150 (312)
T ss_dssp HHHHHHHHHHHHHHTSSCBSEEEECSCCSS-SC--HHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCCCCCC-CC--HHHHHHHHHHHHHCCCcC
Confidence 456788899999999853 41 221111 12 356778899999999874
No 121
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron} PDB: 3co4_A
Probab=25.86 E-value=88 Score=23.12 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcC---cccccC-CceecCChhHHHHHHHHHH-HH-HHCCCe
Q psy6621 67 WTVGNIATMKSQLQGFG---CKFNWE-SELATCDPKYYKWTQALFL-DL-YHAGLV 116 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~lg---i~~d~~-~~~~T~~~~~~~~v~~~f~-~L-~~~G~i 116 (133)
..+.+++.+.+.++..| |.+||+ .+.. ...|..+++++=. +| ..+|++
T Consensus 89 ~r~~fi~si~~~~~~~~~DGiDiDwE~~p~~--~~~~~~ll~eLr~~~l~~~~~~~ 142 (312)
T 3fnd_A 89 ARKELIQQIIAFTKEYKLDGFDIDYEEYDNW--DKNFPSLLVFARGLYLAKEKNML 142 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECCCCCTTH--HHHHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeeeeCCCc--hHHHHHHHHHHHHHHhcccCCcE
Confidence 34455666666666664 566787 5432 2667777777766 66 455654
No 122
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=25.69 E-value=1e+02 Score=23.24 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-.. .+ .+.+.+.+.+|.++|.|-.
T Consensus 118 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~-~~--~~e~~~aL~~l~~~Gkir~ 168 (360)
T 2bp1_A 118 DSVRSQLETSLKRLQCPQVDLFYLHAPDHG-TP--VEETLHACQRLHQEGKFVE 168 (360)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCTT-SC--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCeEeEEEecCCCCC-CC--HHHHHHHHHHHHHCCCccE
Confidence 456788899999999853 41 222111 11 3467788999999999854
No 123
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=25.64 E-value=96 Score=21.96 Aligned_cols=25 Identities=24% Similarity=-0.013 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
..+++.+..|.+.|+|++..+.-.|
T Consensus 48 ~tvr~Al~~L~~~G~i~~~~g~G~~ 72 (236)
T 3edp_A 48 TTIRRAVDLLVEEGLVVRKNGVGLY 72 (236)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCceEE
Confidence 3588899999999999987654443
No 124
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=25.61 E-value=70 Score=18.90 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHCCCeEEe
Q psy6621 101 KWTQALFLDLYHAGLVYRK 119 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~ 119 (133)
..+...+.+|.++|+|.+.
T Consensus 41 ~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 41 ATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 4688899999999999874
No 125
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=25.48 E-value=92 Score=22.98 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceec----------------CChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELAT----------------CDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T----------------~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+... ....-...+++.+.+|.++|.|-.
T Consensus 87 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~al~~l~~~Gkir~ 156 (316)
T 3o3r_A 87 SLMKEAFQKTLSDLKLDYLDLYLIHWPQGLQAGKEFLPKDSQGKVLMSKSTFLDAWEGMEELVDQGLVKA 156 (316)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCSSCBCCSSCSSCBCTTSCBCBCSCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEEcCCccccCcccccccccccccccccccHHHHHHHHHHHHHcCCCcE
Confidence 456778899999999853 41 111100 000113457788999999999853
No 126
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=25.41 E-value=1e+02 Score=22.90 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceec-----------CCh---hHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELAT-----------CDP---KYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T-----------~~~---~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+... .++ .-.+.+++.+.+|.++|.|-.
T Consensus 108 ~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~~~~~~~~~d~~~~~~~~e~~~al~~l~~~Gkir~ 175 (346)
T 1lqa_A 108 KNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRY 175 (346)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSCSSCCSCTTCCSCCCCSSCCSSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCceeEEEecCccccccccccccccccccccCCCHHHHHHHHHHHHHcCCeEE
Confidence 456788899999999854 51 222000 011 113567788999999999854
No 127
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=24.63 E-value=95 Score=23.23 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC-C----------hhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC-D----------PKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~-~----------~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. ..+.... . +.-...+++.+.+|.++|.|-
T Consensus 106 ~~i~~~~e~SL~rLg~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~Gkir 169 (331)
T 3h7r_A 106 EDVPKALEKTLQDLQIDYVDLYLIHWPASLKKESLMPTPEMLTKPDITSTWKAMEALYDSGKAR 169 (331)
T ss_dssp THHHHHHHHHHHHHTCSCBSEEEECCSCEECTTCSSCCGGGEECCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEecCcccccccccccccccccCCHHHHHHHHHHHHHcCCCc
Confidence 355778889999999753 41 1111100 0 011356788899999999973
No 128
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=24.58 E-value=97 Score=17.12 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 52 PAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 52 ~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
.+...|++.|.++..+..+.+..+.++.+.
T Consensus 17 rL~~lA~~~~rs~s~lireAi~~yl~~~E~ 46 (58)
T 2ay0_A 17 RIKSAATRIDRTPHWLIKQAIFSYLEQLEN 46 (58)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 456677888999999988888888776543
No 129
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=24.55 E-value=75 Score=19.89 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 66 ~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 66 PTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHHHTTSEEEEC
T ss_pred hhHHHHHHHHHHCCCeeccC
Confidence 46888999999999999754
No 130
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=24.49 E-value=44 Score=21.08 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeeecCCCCCC
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQNLPTKFY 132 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~ 132 (133)
..+-..+.+|.++|+|........=+++.++|
T Consensus 48 gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y 79 (116)
T 3f8b_A 48 ATLYTIFKRLEKDGIISSYWGDESQGGRRKYY 79 (116)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEC----CCEEEE
T ss_pred chHHHHHHHHHHCCCEEEEeeccCCCCCceEE
Confidence 45778899999999998754322223444444
No 131
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=24.45 E-value=78 Score=19.17 Aligned_cols=27 Identities=7% Similarity=-0.111 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeeecCC
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQNLP 128 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~~~~ 128 (133)
+.|..++.+|.+.|.|..- ...+|++.
T Consensus 49 KeVdKaik~LKkEgkI~SP-kRCyw~~~ 75 (80)
T 2lnb_A 49 RELNQVLYRMKKELKVSLT-SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEE-ETTEEEES
T ss_pred HHHHHHHHHHHHcCCccCC-CCceeeCC
Confidence 5788999999999998754 66777764
No 132
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=24.24 E-value=99 Score=23.36 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC--C---h-------hHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC--D---P-------KYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~--~---~-------~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||+.. |. ..+.... + | .-...+++.+.+|.++|.|-.
T Consensus 121 ~~v~~ale~SL~rLg~dyIDl~llH~p~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~ 186 (344)
T 2bgs_A 121 ERVRPALENTLKDLQLDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVKD 186 (344)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSSCEECTTCCSSCCTTCEECCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEecCCccccccccccccccccCCCHHHHHHHHHHHHHcCCccE
Confidence 456788899999999853 41 1111100 0 1 013567888999999999854
No 133
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=24.09 E-value=89 Score=23.54 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-.. .| .+.+++.+.+|.++|.|-.
T Consensus 135 ~~i~~~~e~SL~rLg~dyiDl~~lH~p~~~-~~--~~e~~~aL~~l~~~Gkir~ 185 (353)
T 3erp_A 135 KYLIASLDQSLKRMGLEYVDIFYHHRPDPE-TP--LKETMKALDHLVRHGKALY 185 (353)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCTT-SC--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCeEeEEEecCCCCC-CC--HHHHHHHHHHHHHCCCccE
Confidence 456788889999999843 41 111111 11 3457788999999999853
No 134
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=23.97 E-value=58 Score=19.89 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+...+++|.++|+|.+...
T Consensus 43 ~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 43 KMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeec
Confidence 457788999999999997643
No 135
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=23.86 E-value=1e+02 Score=23.09 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC-C----------hhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC-D----------PKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~-~----------~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||... |. ..+.... . +.-...+++.+.+|.++|.|-
T Consensus 110 ~~v~~~~e~SL~rLg~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~Gkir 173 (335)
T 3h7u_A 110 QDVPEALNRTLKDLQLEYVDLYLIHWPARIKKGSVGIKPENLLPVDIPSTWKAMEALYDSGKAR 173 (335)
T ss_dssp THHHHHHHHHHHHHTCSCBSEEEECSSCEECSSCSSCCGGGEECCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEcCCCccccccccccccccccCCHHHHHHHHHHHHHcCCcc
Confidence 356778889999999853 41 1111100 0 011356788899999999974
No 136
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=23.85 E-value=92 Score=22.96 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC----------C---hhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC----------D---PKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~----------~---~~~~~~v~~~f~~L~~~G~iy 117 (133)
+...+.+.+.|++||+.. |. +.+.... + ..-...+++.+.+|.++|.|-
T Consensus 96 ~~v~~~~~~SL~rL~~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~e~~~ale~l~~~Gkir 161 (312)
T 1zgd_A 96 HLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTK 161 (312)
T ss_dssp GGHHHHHHHHHHHHTCSCBSEEEECCSCEECTTCCCSSEEGGGEECCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEeccCcccCccccccccccccccccHHHHHHHHHHHHHcCCCC
Confidence 445778889999999853 41 1121100 0 011356788899999999874
No 137
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=23.66 E-value=1e+02 Score=22.56 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhH-HH-HHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKY-YK-WTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~-~~-~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+ ..++.. .. .+++.+.+|.++|.|-.
T Consensus 133 ~~i~~~~e~SL~rLg~dyiDl~llH~p--~~d~~~~~~~e~~~al~~l~~~Gkir~ 186 (292)
T 4exb_A 133 AHTRRSVERSLKRLETDRIELVLVHSD--GNDLDILENSEVYPTLAALKREGLIGA 186 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEEEEECC--SCHHHHHHHSSHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEecC--CCCccccchHHHHHHHHHHHHCCCceE
Confidence 456788899999999843 41 111 111111 12 57788999999999853
No 138
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=23.56 E-value=84 Score=19.07 Aligned_cols=52 Identities=17% Similarity=0.012 Sum_probs=32.6
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 60 HGI-DPREWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 60 ~g~-~~~~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
.|+ ++.++....+..+...+..-|.+. .| -..+...+..+|.-|.+.|++-.
T Consensus 46 ~~~~~l~~it~~~i~~y~~~l~~~~~s~------~T-i~~~ls~lr~f~~~l~~~g~i~~ 98 (117)
T 3nrw_A 46 RDITAMRELTGWKLDEYETFRRGSDVSP------AT-LNGEMQTLKNWLEYLARIDVVDE 98 (117)
T ss_dssp TTCCSGGGCCHHHHHHHHHHHHTSSCCH------HH-HHHHHHHHHHHHHHHHHTTSSCT
T ss_pred cCCCChHHCCHHHHHHHHHHHHhCCCCH------HH-HHHHHHHHHHHHHHHHHcCCccc
Confidence 454 555666666666666665433322 12 23456788889999999998754
No 139
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=23.45 E-value=1e+02 Score=22.79 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+..... -...+++.+.+|.++|.|-.
T Consensus 104 ~~v~~~~e~SL~rLg~dyiDl~llH~p~~~~~--~~~e~~~al~~l~~~Gkir~ 155 (296)
T 1mzr_A 104 KRPREALLDSLKKLQLDYIDLYLMHWPVPAID--HYVEAWKGMIELQKEGLIKS 155 (296)
T ss_dssp TCHHHHHHHHHHHHTCSCEEEEEESCCCTTTC--CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEccCCCCcC--CHHHHHHHHHHHHHCCCcCE
Confidence 567788999999999853 41 22211011 13567888999999999854
No 140
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.36 E-value=79 Score=19.60 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 62 ~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 62 PTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred ccHHHHHHHHHHCCCEeecC
Confidence 46888999999999999763
No 141
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=23.29 E-value=82 Score=19.74 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 65 ~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 65 GTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHHHHHTTSEEEEC
T ss_pred hhHHHHHHHHHHCCCeEecC
Confidence 46888999999999999864
No 142
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=23.00 E-value=1.1e+02 Score=17.38 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=16.7
Q ss_pred HHHHcCCChH------HHHHHHHHHHHHHHHh
Q psy6621 56 AAHQHGIDPR------EWTVGNIATMKSQLQG 81 (133)
Q Consensus 56 ~a~~~g~~~~------~~~~~~~~~~~~~l~~ 81 (133)
+++..|.++. ++..+|++.|+..++.
T Consensus 16 K~K~~gLT~eEk~EQ~~LR~eYl~~fR~~~r~ 47 (60)
T 3bhp_A 16 KAKAGVITEEEKAEQQKLRQEYLKGFRSSMKN 47 (60)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788863 4566677777776654
No 143
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=22.80 E-value=95 Score=23.00 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+-. ..+ .+.+++.+.+|.++|.|-.
T Consensus 115 ~~v~~~~e~SL~rL~~dyiDl~llH~p~~-~~~--~~e~~~al~~l~~~Gkir~ 165 (317)
T 1ynp_A 115 AYIKEAVKDSLRRLQTDYIDLYQLHGGTI-DDP--IDETIEAFEELKQEGVIRY 165 (317)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECSCCT-TSC--HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHCCCcEeEEEecCCCC-CCC--hHHHHHHHHHHHhCCceEE
Confidence 455778899999999854 41 12111 112 2456778999999999854
No 144
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=22.71 E-value=1.1e+02 Score=16.93 Aligned_cols=25 Identities=4% Similarity=-0.057 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHH
Q psy6621 53 AENAAHQHGIDPREWTVGNIATMKS 77 (133)
Q Consensus 53 i~~~a~~~g~~~~~~~~~~~~~~~~ 77 (133)
+...|...|.+..+|+++.+..+.+
T Consensus 28 lk~~Aa~~g~Sln~~i~eAL~~yl~ 52 (56)
T 2kel_A 28 LKVYCAKNNLQLTQAIEEAIKEYLQ 52 (56)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4456778899999999888887754
No 145
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=22.61 E-value=86 Score=19.01 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHCCCeEE
Q psy6621 101 KWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~ 118 (133)
..+..++++|.++|+|.+
T Consensus 51 ~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 51 TEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 458889999999999994
No 146
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=22.61 E-value=1.1e+02 Score=21.80 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=23.4
Q ss_pred cCChhHHHHHHHHHHHHHHCCCeEEece
Q psy6621 94 TCDPKYYKWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 94 T~~~~~~~~v~~~f~~L~~~G~iy~~~~ 121 (133)
...+...+.+.+.+.+|.++|.|.....
T Consensus 42 ~~~~~~~~~~~~~i~~ll~~G~I~~~~s 69 (255)
T 3fsi_A 42 PMSQEARLGIKPHIQRLLDQGILVPCQS 69 (255)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSEEEECC
T ss_pred cCCHHHHHHHHHHHHHHHhCCeEEecCC
Confidence 4567778899999999999999998743
No 147
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=22.60 E-value=1.2e+02 Score=22.47 Aligned_cols=50 Identities=20% Similarity=0.084 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC--------Ch--------hHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC--------DP--------KYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~--------~~--------~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+.... ++ .-...+++.+.+|.++|.|-.
T Consensus 96 ~~v~~~~~~SL~rL~~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ale~l~~~Gkir~ 165 (326)
T 3buv_A 96 EMVRPTLERTLRVLQLDYVDLYIIEVPMAFKPGDEIYPRDENGKWLYHKSNLCATWEAMEACKDAGLVKS 165 (326)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESCSCCBCCSSCSSCBCTTCCBCBCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEccCCccCCccccCccccccccccccccHHHHHHHHHHHHHcCCccE
Confidence 456788899999999853 41 1111000 00 013567788999999999864
No 148
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=22.44 E-value=97 Score=23.42 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. +.+-... -.+.+.+.+.+|.++|.|-.
T Consensus 134 ~~i~~~~e~SL~rLg~dyiDl~~lH~pd~~~---~~~e~~~al~~l~~~Gkir~ 184 (367)
T 3lut_A 134 KHIIEGLKASLERLQLEYVDVVFANRPDPNT---PMEETVRAMTHVINQGMAMY 184 (367)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEESSCCTTS---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCccceEEecCCCCCC---CHHHHHHHHHHHHHcCCeeE
Confidence 455678889999999743 41 1111111 13457788999999999853
No 149
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=22.42 E-value=69 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..|..++..|.++|+|.+...
T Consensus 66 ~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 66 AECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp HHHHHHHHHHHHTTSSEECC-
T ss_pred HHHHHHHHHHHHCCCEEEEeE
Confidence 478899999999999998543
No 150
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=22.24 E-value=82 Score=20.29 Aligned_cols=20 Identities=25% Similarity=0.141 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 82 ~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 82 STTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCEEeeC
Confidence 46888999999999999864
No 151
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Probab=22.23 E-value=1.2e+02 Score=22.62 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecC--------Chh--------HHHHHHHHHHHHHHCCCeEE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATC--------DPK--------YYKWTQALFLDLYHAGLVYR 118 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~--------~~~--------~~~~v~~~f~~L~~~G~iy~ 118 (133)
+...+.+.+.|++||... |. ..+.... +++ -...+++.+.+|.++|.|-.
T Consensus 93 ~~v~~~~e~SL~rLg~dyiDl~llH~p~~~~~~~~~~~~d~~g~~~~~~~~~~e~~~ale~l~~~Gkir~ 162 (331)
T 1s1p_A 93 ELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKS 162 (331)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECCSCCBCCSSCSSCBCTTSCBCBCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeccCcccCCCcccCCccccccccccccCHHHHHHHHHHHHHcCCccE
Confidence 456788899999999853 41 1111000 110 23567788999999999854
No 152
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=22.23 E-value=1.1e+02 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHCCCeEEeceeeee
Q psy6621 101 KWTQALFLDLYHAGLVYRKEVDYSQ 125 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~~v~~ 125 (133)
..|.+++..|.+.|+|++ .+.-.|
T Consensus 51 ~tvr~Al~~L~~~G~i~~-~g~Gt~ 74 (248)
T 3f8m_A 51 ETVRQALRELLIDGRVER-RGRTTV 74 (248)
T ss_dssp HHHHHHHHHHHHTTSEEE-ETTEEE
T ss_pred HHHHHHHHHHHHCCCEEe-CCCEEE
Confidence 468899999999999999 654443
No 153
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=22.12 E-value=84 Score=19.44 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 65 ~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 65 STATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHCCCEEeeC
Confidence 46888999999999998753
No 154
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=22.03 E-value=98 Score=16.22 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q psy6621 52 PAENAAHQHGIDPREWTVGNIATMKSQLQG 81 (133)
Q Consensus 52 ~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 81 (133)
.+...|++.|.+...+..+.+..+.+..+.
T Consensus 17 ~l~~lA~~~~rs~s~lir~Ai~~yl~~~e~ 46 (52)
T 2gpe_A 17 RIKSAATRIDRTPHWLIKQAIFSYLEQLEN 46 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 345667788999999988888888876654
No 155
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=21.83 E-value=85 Score=19.63 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+...+.+|.++|+|.+..
T Consensus 65 ~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 65 SAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHHCCCEEecc
Confidence 46888999999999999754
No 156
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=21.60 E-value=87 Score=20.05 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 79 ~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 79 GTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEec
Confidence 46888999999999999764
No 157
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=21.40 E-value=59 Score=19.81 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCeEEece
Q psy6621 101 KWTQALFLDLYHAGLVYRKEV 121 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~~ 121 (133)
..+...+++|.++|+|.+...
T Consensus 54 ~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 54 KMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeec
Confidence 457788999999999987643
No 158
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=21.31 E-value=90 Score=20.02 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 66 ~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 66 TSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEee
Confidence 46788999999999999764
No 159
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=21.11 E-value=88 Score=20.26 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 61 ~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 61 PSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCeEeec
Confidence 46888999999999999754
No 160
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.02 E-value=1.5e+02 Score=20.40 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHCCCeEEecee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVD 122 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~ 122 (133)
.|.+.+..|...|+|....+.
T Consensus 47 tVReAL~~L~~eGlv~~~~g~ 67 (239)
T 1hw1_A 47 TLREVLQRLARDGWLTIQHGK 67 (239)
T ss_dssp HHHHHHHHHHHTTSEEEETTE
T ss_pred HHHHHHHHHHHCCcEEEecCC
Confidence 588999999999999976544
No 161
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=20.85 E-value=74 Score=22.99 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcCcccccCCceecCChhHHHHHHHHHHHHHHCCCeEEeceeeeecC
Q psy6621 66 EWTVGNIATMKSQLQGFGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNL 127 (133)
Q Consensus 66 ~~~~~~~~~~~~~l~~lgi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~ 127 (133)
+-.....+.+.+.++.-|+...|-.+.......=.+.+..++..|.+.|.+.+-...++|.+
T Consensus 137 ~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~ 198 (258)
T 1lva_A 137 ETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHR 198 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcH
Confidence 33455566666666666665533222221000012467788999999999998877777754
No 162
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=20.61 E-value=89 Score=20.42 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+..++.+|.++|+|.+..
T Consensus 83 ~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 83 PSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHHHTTSEEEC-
T ss_pred hhHHHHHHHHHHCCCEEeeC
Confidence 46888999999999999854
No 163
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=20.48 E-value=1.5e+02 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCccc-cc---CCceecCChhHHHHHHHHHHHHHHCCCeE
Q psy6621 69 VGNIATMKSQLQGFGCKF-NW---ESELATCDPKYYKWTQALFLDLYHAGLVY 117 (133)
Q Consensus 69 ~~~~~~~~~~l~~lgi~~-d~---~~~~~T~~~~~~~~v~~~f~~L~~~G~iy 117 (133)
+.....+.+.|++||... |. +.+ ...+ ...+.+.+.+|.+.|.|-
T Consensus 95 ~~~~~~~e~SL~rL~~dyiDly~lH~p--~~~~--~~e~~~al~~l~~~Gkir 143 (290)
T 4gie_A 95 EKTLAAFERSRELLGLEYIDLYLIHWP--GKKK--FVDTWKALEKLYEEKKVR 143 (290)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEECCC--CSSS--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhCCCceeeEEecCC--CCCc--chHHHHHHHHHHHCCCcc
Confidence 344567788999999854 41 211 1111 234677889999999975
No 164
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.40 E-value=1.2e+02 Score=16.44 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy6621 52 PAENAAHQHGIDPREWTVGNIATMKSQ 78 (133)
Q Consensus 52 ~i~~~a~~~g~~~~~~~~~~~~~~~~~ 78 (133)
.+...|+++|.+...++...+....+.
T Consensus 21 ~l~~~A~~~grS~N~~i~~~L~~~l~~ 47 (53)
T 1baz_A 21 LVRKVAEENGRSVNSEIYQRVMESFKK 47 (53)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 466778889999888877776655443
No 165
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.37 E-value=1.1e+02 Score=18.99 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCeEEec
Q psy6621 101 KWTQALFLDLYHAGLVYRKE 120 (133)
Q Consensus 101 ~~v~~~f~~L~~~G~iy~~~ 120 (133)
..+...+.+|.++|+|.+..
T Consensus 67 ~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 67 PTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHHHTTSEEEEC
T ss_pred hhHHHHHHHHHHCCCeeecC
Confidence 45888999999999999854
No 166
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.24 E-value=1.1e+02 Score=19.39 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCeEEeceeee
Q psy6621 102 WTQALFLDLYHAGLVYRKEVDYS 124 (133)
Q Consensus 102 ~v~~~f~~L~~~G~iy~~~~~v~ 124 (133)
.|.+.+..|.+.|+|+...+.-+
T Consensus 51 tvr~Al~~L~~~Gli~~~~g~G~ 73 (126)
T 3by6_A 51 TVAKAYKELEAQKVIRTIPGKGT 73 (126)
T ss_dssp HHHHHHHHHHHTTSEEEETTTEE
T ss_pred HHHHHHHHHHHCCCEEEecCCeE
Confidence 58899999999999998765443
No 167
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure, crystallography, asthma,inhibitor, chitin degradation, methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A* 2ybu_A*
Probab=20.19 E-value=74 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhc---CcccccCCceec-----CChhHHHHHHHHHHHHHHCC
Q psy6621 68 TVGNIATMKSQLQGF---GCKFNWESELAT-----CDPKYYKWTQALFLDLYHAG 114 (133)
Q Consensus 68 ~~~~~~~~~~~l~~l---gi~~d~~~~~~T-----~~~~~~~~v~~~f~~L~~~G 114 (133)
.+.+++.+.+.++.. ||.+||+.+... ....|..+++++=.+|.+.|
T Consensus 95 R~~fi~siv~~l~~~gfDGiDiDwEyP~~~g~~~~d~~nf~~ll~eLr~~l~~~~ 149 (395)
T 3fy1_A 95 RQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEA 149 (395)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEECSCTTSTTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeEcCCCCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 345555555556555 456789876432 11356667777666665543
No 168
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A {Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1 PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A* 1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A* 1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Probab=20.03 E-value=96 Score=24.70 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhc---CcccccCCceecCChhHHHHHHHHHHHHHHC
Q psy6621 67 WTVGNIATMKSQLQGF---GCKFNWESELATCDPKYYKWTQALFLDLYHA 113 (133)
Q Consensus 67 ~~~~~~~~~~~~l~~l---gi~~d~~~~~~T~~~~~~~~v~~~f~~L~~~ 113 (133)
-.+.+++.+.+.++.. ||.+||+.+.......|..+++++=.+|.+.
T Consensus 119 ~r~~fi~siv~~~~~~gfDGiDiDwE~p~~~d~~~~~~ll~eLr~~l~~~ 168 (499)
T 1goi_A 119 SRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIRTLLNQQ 168 (499)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEECSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEecccCChhhHHHHHHHHHHHHHHhhhh
Confidence 3455666666666666 4567888764323345666666666666543
Done!