RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6621
(133 letters)
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 77.3 bits (189), Expect = 3e-18
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 39 RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
V PMGWDAFGLPAENAA + G+ P++WT NI K L+ G ++W+ E+ TC+P+
Sbjct: 72 EVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPE 131
Query: 99 YYKWTQALFLDLYHAGLVYR--KEVDYSQNLPTKFYH 133
YY+W Q +FL ++ GL YR V++ T +
Sbjct: 132 YYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLAN 168
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 68.0 bits (165), Expect = 5e-15
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 39 RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
V DA G P A Q GI P + ++ GF ++++ +T +
Sbjct: 41 EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNI--SYDNYHSTHSEE 98
Query: 99 YYKWTQALFLDLYHAGLVYRKEVD 122
+ ++ ++ L G + + +
Sbjct: 99 NRQLSELIYSRLKENGFIKNRTIS 122
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 56.6 bits (135), Expect = 4e-11
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 39 RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
V G D G P A + G PRE +K Q F++ T P
Sbjct: 42 DVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGR--TELPI 99
Query: 99 YYKWTQALFLDLYHAGLVYRKEVD 122
+YK +Q FL Y G + +K
Sbjct: 100 HYKLSQEFFLKAYENGHLVKKVTK 123
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 53.4 bits (127), Expect = 7e-10
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 17/112 (15%)
Query: 39 RVFQPMGWDAFGLPAENAAHQHGIDP-----------------REWTVGNIATMKSQLQG 81
+ GWD GLP E + RE ++ +
Sbjct: 77 YAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTER 136
Query: 82 FGCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRKEVDYSQNLPTKFYH 133
+ E AT +P Y + +L+ GL+YR
Sbjct: 137 IAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 52.0 bits (123), Expect = 2e-09
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 39 RVFQPMGWDAFGLPAENAAHQHGIDPREWTVGNIATMKSQLQGFGCKFNWESELATCDPK 98
R F G D G AA G DP+ + K G ++ + T + +
Sbjct: 42 RTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDD--FIRTTEER 99
Query: 99 YYKWTQALFLDLYHAGLVYRK 119
+ K Q + +Y AG +Y
Sbjct: 100 HKKVVQLVLKKVYEAGDIYYG 120
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 51.9 bits (123), Expect = 2e-09
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 39 RVFQPMGWDAFGLP----AENAAHQHGIDP------------REWTVGNIATMKSQLQGF 82
G D G+ E + G +W + T+ QL+
Sbjct: 73 EAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRL 132
Query: 83 GCKFNWESELATCDPKYYKWTQALFLDLYHAGLVYRK 119
G +W E T D K + + F YH GL YR
Sbjct: 133 GASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 43.4 bits (101), Expect = 2e-06
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 39 RVFQPMGWDAFGLPAENAAHQHGIDPREWTV------------GNIATMKSQLQGFGCKF 86
GWD GLP E A + G+D ++ + I K + G +
Sbjct: 87 YAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRG 146
Query: 87 NWESELATCDPKYYKWTQALFLDLYHAGLVYR--KEVDYSQNLPTKFYH 133
++ T P+Y +F ++ GL+Y+ K V +S + +
Sbjct: 147 DFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAE 195
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 236
Score = 29.0 bits (65), Expect = 0.14
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 14 GVVVKTHSGAECRLAGINSIIKGPV--------RVFQPMGWDAFGLPAENA 56
GV+ H GA+ + S+++ PV +V++P W A G+ E
Sbjct: 174 GVLTIGHVGAD--FITLASMLRIPVCMHNVEETKVYRPSAWAAHGMDIEGQ 222
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase
DmpG, communication domain {Pseudomonas sp. [TaxId:
306]}
Length = 51
Score = 26.9 bits (60), Expect = 0.17
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 49 FGLPAENAAHQHGIDPRE 66
F AE AA ++ + +
Sbjct: 4 FLRHAEIAAAKYNLKTLD 21
>g1dy9.1 b.47.1.3 (A:,C:) NS3 protease {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 187
Score = 24.2 bits (53), Expect = 4.6
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 10 TCLGGVVVKTHSGAECR-LAGINSIIKGPVRVFQPMGWDA 48
TC+ GV + GA + LAG KGP+ M +
Sbjct: 46 TCVNGVCWTVYHGAGSKTLAG----PKGPI---TQMYTNV 78
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 118
Score = 24.0 bits (52), Expect = 4.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 7 EELTCLGGVVVKTHSG 22
E + +GGV+V+T G
Sbjct: 74 ETVDTMGGVIVETEDG 89
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 24.3 bits (52), Expect = 6.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 20 HSGAECRLAGINSIIKGPVRVFQPMGWDAFG 50
SG + G+N+ I+G VR G + G
Sbjct: 9 TSGGDA--PGMNAAIRGVVRSALTEGLEVMG 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.456
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 551,238
Number of extensions: 24160
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 16
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.3 bits)