BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6623
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 351 bits (900), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 165/192 (85%), Positives = 176/192 (91%)
Query: 9 TDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLD 68
TD+KMV DV+ RMEDTEPFS ELLSAM RLW DSG+QECF RS EYQLNDSAKY+LD LD
Sbjct: 81 TDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLD 140
Query: 69 RLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTA 128
R+GA +YQPTEQDILRTRVKTTGIVE HF+FKNL+F+LFDVGGQRSERKKWIHCFEDVTA
Sbjct: 141 RIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTA 200
Query: 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
IIFCVA+S YDQVLHEDETTNRM ESL LFDSICNNK+F DTSIILFLNKKDLF EKIKK
Sbjct: 201 IIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKK 260
Query: 189 SPLTICFPEYAG 200
SPLTICFPEY G
Sbjct: 261 SPLTICFPEYPG 272
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 64 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 122
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 123 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 182
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 183 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 242
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 243 EEKIKKSPLTICYPEYAGSNTYE 265
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 207 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 261
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 69 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 127
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 128 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 187
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 188 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 247
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 248 EEKIKKSPLTICYPEYAGSNTYE 270
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 212 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 266
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 72 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 130
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 131 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 190
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 191 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 250
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 251 EEKIKKSPLTICYPEYAGSNTYE 273
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 269
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 70 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 128
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 129 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 188
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 189 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 248
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 249 EEKIKKSPLTICYPEYAGSNTYE 271
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 267
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 71 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 129
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 130 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 189
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 190 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 249
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 250 EEKIKKSPLTICYPEYAGSNTYE 272
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 214 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 268
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 67 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 125
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 126 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 185
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 186 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 245
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 246 EEKIKKSPLTICYPEYAGSNTYE 268
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 264
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 66 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 124
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 125 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 184
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 185 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 244
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 245 EEKIKKSPLTICYPEYAGSNTYE 267
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 209 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 263
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 65 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 123
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 124 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 183
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 184 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 243
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 244 EEKIKKSPLTICYPEYAGSNTYE 266
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 262
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 67 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 125
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 126 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 185
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 186 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 245
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 246 EEKIKKSPLTICYPEYAGSNTYE 268
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 264
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 65 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 123
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 124 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 183
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 184 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 243
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 244 EEKIKKSPLTICYPEYAGSNTYE 266
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 262
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 301 bits (770), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 142/198 (71%), Positives = 162/198 (81%), Gaps = 1/198 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 102 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 160
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 161 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 220
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 221 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 280
Query: 183 EEKIKKSPLTICFPEYAG 200
EEKIKKSPLTIC+PEYAG
Sbjct: 281 EEKIKKSPLTICYPEYAG 298
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 245 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 299
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 301 bits (770), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 95 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 153
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 213
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 274 EEKIKKSPLTICYPEYAGSNTYE 296
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 142/198 (71%), Positives = 162/198 (81%), Gaps = 1/198 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 98 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 156
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 157 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 216
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 217 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 276
Query: 183 EEKIKKSPLTICFPEYAG 200
EEKIKKSPLTIC+PEYAG
Sbjct: 277 EEKIKKSPLTICYPEYAG 294
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/54 (92%), Positives = 52/54 (96%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 258
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 241 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 294
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 95 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 153
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 213
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 274 EEKIKKSPLTICYPEYAGSNTYE 296
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 163/203 (80%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 96 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 154
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 155 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 214
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 215 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 274
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 275 EEKIKKSPLTICYPEYAGSNTYE 297
Score = 110 bits (275), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 239 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 293
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 299 bits (766), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 162/203 (79%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 96 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 154
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDV GQRSERKKWIHC
Sbjct: 155 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHC 214
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 215 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 274
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 275 EEKIKKSPLTICYPEYAGSNTYE 297
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 239 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 293
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 141/198 (71%), Positives = 161/198 (81%), Gaps = 1/198 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 95 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 153
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRV TTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 213
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 183 EEKIKKSPLTICFPEYAG 200
EEKIKKSPLTIC+PEYAG
Sbjct: 274 EEKIKKSPLTICYPEYAG 291
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/203 (69%), Positives = 162/203 (79%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 95 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 153
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVG QRSERKKWIHC
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHC 213
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 274 EEKIKKSPLTICYPEYAGSNTYE 296
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/203 (70%), Positives = 162/203 (79%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EY LNDSA Y
Sbjct: 70 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYLLNDSAAY 128
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHC
Sbjct: 129 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 188
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 189 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 248
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 249 EEKIKKSPLTICYPEYAGSNTYE 271
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 213 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 267
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 298 bits (762), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/203 (69%), Positives = 162/203 (79%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 95 GDAARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 153
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGG RSERKKWIHC
Sbjct: 154 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHC 213
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLF
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 274 EEKIKKSPLTICYPEYAGSNTYE 296
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/203 (69%), Positives = 161/203 (79%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G S DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y
Sbjct: 96 GDSARADDARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAY 154
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDV GQRSERKKWIHC
Sbjct: 155 YLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHC 214
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNK FTDTSIILFLNKKDLF
Sbjct: 215 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLF 274
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIKKSPLTIC+PEYAG E
Sbjct: 275 EEKIKKSPLTICYPEYAGSNTYE 297
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 51/55 (92%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNK FTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 239 EMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 293
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 160/203 (78%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW D GVQ CF RS EYQLNDSA Y
Sbjct: 95 GEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASY 153
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L FK+FDVGGQRSERKKWIHC
Sbjct: 154 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 213
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLF
Sbjct: 214 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 273
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIK+SPLTIC+PEY G E
Sbjct: 274 EEKIKRSPLTICYPEYTGSNTYE 296
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLFEEKIK+SPLTIC+PEY G
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGS 292
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 293 bits (750), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 160/203 (78%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW D GVQ CF RS EYQLNDSA Y
Sbjct: 65 GEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASY 123
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L FK+FDVGGQRSERKKWIHC
Sbjct: 124 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 183
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLF
Sbjct: 184 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 243
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIK+SPLTIC+PEY G E
Sbjct: 244 EEKIKRSPLTICYPEYTGSNTYE 266
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLFEEKIK+SPLTIC+PEY G
Sbjct: 208 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGS 262
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 293 bits (750), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 139/203 (68%), Positives = 160/203 (78%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW D GVQ CF RS EYQLNDSA Y
Sbjct: 72 GEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASY 130
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L FK+FDVGGQRSERKKWIHC
Sbjct: 131 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 190
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLF
Sbjct: 191 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 250
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIK+SPLTIC+PEY G E
Sbjct: 251 EEKIKRSPLTICYPEYTGSNTYE 273
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLFEEKIK+SPLTIC+PEY G
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGS 269
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 290 bits (742), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 138/203 (67%), Positives = 159/203 (78%), Gaps = 1/203 (0%)
Query: 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKY 62
G + DA+ +F V+ + + EL +KRLW D GVQ CF RS EY LNDSA Y
Sbjct: 72 GEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYLLNDSASY 130
Query: 63 FLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHC 122
+L+DLDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L FK+FDVGGQRSERKKWIHC
Sbjct: 131 YLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHC 190
Query: 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182
FE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLF
Sbjct: 191 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLF 250
Query: 183 EEKIKKSPLTICFPEYAGKRPGE 205
EEKIK+SPLTIC+PEY G E
Sbjct: 251 EEKIKRSPLTICYPEYTGSNTYE 273
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFT+TSIILFLNKKDLFEEKIK+SPLTIC+PEY G
Sbjct: 215 EMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYTGS 269
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 290 bits (741), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/204 (68%), Positives = 164/204 (80%), Gaps = 3/204 (1%)
Query: 3 GTSLDTTDAKMVFDVIQRMED-TEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAK 61
G S DA+ + + +E+ T P +E+ ++RLW DSG+Q CF R++EYQLNDSA
Sbjct: 67 GDSARQDDARKLMHMADTIEEGTMP--KEMSDIIQRLWKDSGIQACFDRASEYQLNDSAG 124
Query: 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIH 121
Y+L DL+RL Y PTEQD+LR+RVKTTGI+E FSFK+LNF++FDVGGQRSERKKWIH
Sbjct: 125 YYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIH 184
Query: 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
CFE VTAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDL
Sbjct: 185 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
Query: 182 FEEKIKKSPLTICFPEYAGKRPGE 205
FEEKIKKSPLTIC+PEYAG E
Sbjct: 245 FEEKIKKSPLTICYPEYAGSNTYE 268
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 264
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 286 bits (733), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 162/199 (81%), Gaps = 3/199 (1%)
Query: 3 GTSLDTTDAKMVFDVIQRMED-TEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAK 61
G S DA+ + + +E+ T P +E+ ++RLW DSG+Q CF R++EYQLNDSA
Sbjct: 98 GDSARQDDARKLMHMADTIEEGTMP--KEMSDIIQRLWKDSGIQACFDRASEYQLNDSAG 155
Query: 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIH 121
Y+L DL+RL Y PTEQD+LR+RVKTTGI+E FSFK+LNF++FDVGGQRSERKKWIH
Sbjct: 156 YYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIH 215
Query: 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
CFE VTAIIFCVA+S+YD VL EDE NRM ES+ LF+SICNNKWFTDTSIILFLNKKDL
Sbjct: 216 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
Query: 182 FEEKIKKSPLTICFPEYAG 200
FEEKIKKSPLTIC+PEYAG
Sbjct: 276 FEEKIKKSPLTICYPEYAG 294
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/54 (88%), Positives = 51/54 (94%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 258
E NRM ES+ LF+SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 241 EMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 294
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/199 (69%), Positives = 158/199 (79%), Gaps = 3/199 (1%)
Query: 3 GTSLDTTDAKMVFDVIQRMED-TEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAK 61
G S DA+ + +E+ T P +E ++RLW DSG+Q CF R++EYQLNDSA
Sbjct: 92 GDSARQDDARKLXHXADTIEEGTXP--KEXSDIIQRLWKDSGIQACFDRASEYQLNDSAG 149
Query: 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIH 121
Y+L DL+RL Y PTEQD+LR+RVKTTGI+E FSFK+LNF+ FDVGGQRSERKKWIH
Sbjct: 150 YYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIH 209
Query: 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
CFE VTAIIFCVA+S+YD VL EDE NR ES KLFDSICNNKWFTDTSIILFLNKKDL
Sbjct: 210 CFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
Query: 182 FEEKIKKSPLTICFPEYAG 200
FEEKIKKSPLTIC+PEYAG
Sbjct: 270 FEEKIKKSPLTICYPEYAG 288
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 50/55 (90%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NR ES KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 235 EXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 289
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 267 bits (682), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 152/196 (77%), Gaps = 6/196 (3%)
Query: 10 DAKMVFD-----VIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFL 64
D M FD Q M +T F + L A++ LW DSG+Q + R E+QL +S KYFL
Sbjct: 84 DKLMAFDTRAPMAAQGMVETRVFLQ-YLPAIRALWEDSGIQNAYDRRREFQLGESVKYFL 142
Query: 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE 124
D+LD+LG +Y P++QDIL R T GI E HF+FK+L+FK+FDVGGQRSERKKW CFE
Sbjct: 143 DNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFE 202
Query: 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184
VTAIIFCVA+S+YDQVL ED TNRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEE
Sbjct: 203 GVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE 262
Query: 185 KIKKSPLTICFPEYAG 200
KIKKSPLTIC+PEYAG
Sbjct: 263 KIKKSPLTICYPEYAG 278
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/54 (90%), Positives = 52/54 (96%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 258
+ NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG
Sbjct: 225 QTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 278
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 153/199 (76%), Gaps = 3/199 (1%)
Query: 3 GTSLDTTDAKMVFDVIQRMED-TEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAK 61
G S DA+ + + +E+ T P +E+ ++RLW DSG+Q CF R++EYQLNDSA
Sbjct: 66 GDSARQDDARKLMHMADTIEEGTMP--KEMSDIIQRLWKDSGIQACFDRASEYQLNDSAG 123
Query: 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIH 121
Y+L DL+RL Y PTEQD+LR+RVKTTGI+E FSFK+LNF++FDVGGQRSERKKWIH
Sbjct: 124 YYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIH 183
Query: 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
CFE VT IIF A+S YD VL ED+ NRM ESL LF+SICN+++F TSI+LFLNKKD+
Sbjct: 184 CFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
Query: 182 FEEKIKKSPLTICFPEYAG 200
F EKIKK+ L+ICFP+Y G
Sbjct: 244 FSEKIKKAHLSICFPDYNG 262
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 47/55 (85%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259
E NRM ESL LF+SICN+++F TSI+LFLNKKD+F EKIKK+ L+ICFP+Y GP
Sbjct: 209 EVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVFSEKIKKAHLSICFPDYNGP 263
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 221 bits (563), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 137/196 (69%)
Query: 21 MEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQ 80
+E F + A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+ Y PT+Q
Sbjct: 86 VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQ 145
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D+LR RV TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQ
Sbjct: 146 DVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 205
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
VL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G
Sbjct: 206 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 265
Query: 201 KRPGERNRMQESLKLF 216
+ + + LK+F
Sbjct: 266 PQRDAQAAREFILKMF 281
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 221 bits (562), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 137/196 (69%)
Query: 21 MEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQ 80
+E F + A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+ Y PT+Q
Sbjct: 114 VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQ 173
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D+LR RV TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQ
Sbjct: 174 DVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 233
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
VL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G
Sbjct: 234 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 293
Query: 201 KRPGERNRMQESLKLF 216
+ + + LK+F
Sbjct: 294 PQRDAQAAREFILKMF 309
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 137/196 (69%)
Query: 21 MEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQ 80
+E F + A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+ Y PT+Q
Sbjct: 112 VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQ 171
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D+LR RV TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQ
Sbjct: 172 DVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 231
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
VL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G
Sbjct: 232 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 291
Query: 201 KRPGERNRMQESLKLF 216
+ + + LK+F
Sbjct: 292 PQRDAQAAREFILKMF 307
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 105/196 (53%), Positives = 137/196 (69%)
Query: 21 MEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQ 80
+E F + A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+ Y PT+Q
Sbjct: 112 VEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQ 171
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D+LR RV TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQ
Sbjct: 172 DVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 231
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
VL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G
Sbjct: 232 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 291
Query: 201 KRPGERNRMQESLKLF 216
+ + + LK+F
Sbjct: 292 PQRDAQAAREFILKMF 307
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/196 (53%), Positives = 136/196 (69%)
Query: 21 MEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQ 80
+E F +A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+ Y PT+Q
Sbjct: 106 VEKVSAFDVPDYAAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQ 165
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D+LR V TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQ
Sbjct: 166 DVLRVCVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQ 225
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
VL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G
Sbjct: 226 VLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 285
Query: 201 KRPGERNRMQESLKLF 216
+ + + LK+F
Sbjct: 286 PQRDAQAAREFILKMF 301
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Query: 27 FSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTR 86
F E K LW D GV+ C+ RSNEYQL D A+YFLD +D + +Y P++QD+LR R
Sbjct: 142 FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 201
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICFPEYA 199
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFA 316
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/196 (51%), Positives = 125/196 (63%), Gaps = 10/196 (5%)
Query: 27 FSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTR 86
F E K LW D GV+ C+ RSNEYQL D A+YFLD +D + +Y P++QD+LR R
Sbjct: 128 FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 187
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICFPEY------ 198
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTP 307
Query: 199 --AGKRPGERNRMQES 212
A PGE R+ +
Sbjct: 308 EDATPEPGEDPRVTRA 323
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 196 bits (499), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Query: 27 FSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTR 86
F E K LW D GV+ C+ RSNEYQL D A+YFLD +D + +Y P++QD+LR R
Sbjct: 128 FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 187
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 188 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 247
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICFPEYA 199
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 248 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFA 302
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 196 bits (499), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Query: 27 FSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTR 86
F E K LW D GV+ C+ RSNEYQL D A+YFLD +D + +Y P++QD+LR R
Sbjct: 142 FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 201
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICFPEYA 199
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFA 316
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 196 bits (499), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Query: 27 FSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTR 86
F E K LW D GV+ C+ RSNEYQL D A+YFLD +D + +Y P++QD+LR R
Sbjct: 142 FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 201
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICFPEYA 199
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFA 316
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 131/196 (66%), Gaps = 6/196 (3%)
Query: 10 DAKMVFD-----VIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFL 64
D M FD Q M +T F + L A++ LW DSG+Q + R E+QL +S KYFL
Sbjct: 105 DKLMAFDTRAPMAAQGMVETRVFLQ-YLPAIRALWEDSGIQNAYDRRREFQLGESVKYFL 163
Query: 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE 124
D+LD+LG +Y P++QDIL R T GI E F KN+ FK+ DVGGQRSERK+W CF+
Sbjct: 164 DNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFD 223
Query: 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184
VT+I+F V+ SE+DQVL ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EE
Sbjct: 224 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 283
Query: 185 KIKKSPLTICFPEYAG 200
K++ + F E+ G
Sbjct: 284 KVQVVSIKDYFLEFEG 299
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 131/196 (66%), Gaps = 6/196 (3%)
Query: 10 DAKMVFD-----VIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFL 64
D M FD Q M +T F + L A++ LW DSG+Q + R E+QL +S KYFL
Sbjct: 81 DKLMAFDTRAPMAAQGMVETRVFLQ-YLPAIRALWEDSGIQNAYDRRREFQLGESVKYFL 139
Query: 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE 124
D+LD+LG +Y P++QDIL R T GI E F KN+ FK+ DVGGQRSERK+W CF+
Sbjct: 140 DNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFD 199
Query: 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184
VT+I+F V+ SE+DQVL ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EE
Sbjct: 200 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 259
Query: 185 KIKKSPLTICFPEYAG 200
K++ + F E+ G
Sbjct: 260 KVQVVSIKDYFLEFEG 275
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
Query: 24 TEPFSEEL-LSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82
EP + +L + A+ LW DSG++E F R +E+QL +S KYFLD+LDR+G Y P++QDI
Sbjct: 120 VEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQDI 179
Query: 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142
L R T GIVE F K + FK+ DVGGQRS+R+KW CF+ +T+I+F V+ SEYDQVL
Sbjct: 180 LLARKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVL 239
Query: 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
ED TNR+ ES+ +F++I NNK F + SIILFLNK DL EK+K + FP++ G
Sbjct: 240 MEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKSVSIKKHFPDFKG 297
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 130/196 (66%), Gaps = 6/196 (3%)
Query: 10 DAKMVFD-----VIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFL 64
D M FD Q M +T F + L A++ LW DSG+Q + R E+QL +S KYFL
Sbjct: 81 DKLMAFDTRAPMAAQGMVETRVFLQ-YLPAIRALWEDSGIQNAYDRRREFQLGESVKYFL 139
Query: 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE 124
D+LD+LG +Y P++QDIL R T GI E F KN+ FK+ DVGG RSERK+W CF+
Sbjct: 140 DNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFD 199
Query: 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184
VT+I+F V+ SE+DQVL ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EE
Sbjct: 200 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE 259
Query: 185 KIKKSPLTICFPEYAG 200
K++ + F E+ G
Sbjct: 260 KVQVVSIKDYFLEFEG 275
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 116/178 (65%), Gaps = 6/178 (3%)
Query: 23 DTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82
D ++++ ++ LW D +QE R NE Q+ D KY +++L RL Y PT++D+
Sbjct: 98 DYPRLTKDIAEGIETLWKDPAIQETXARGNELQVPDXTKYLMENLKRLSDINYIPTKEDV 157
Query: 83 LRTRVKTTGIVEVHFSFKNLN------FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMS 136
L RV+TTG+VE+ FS N ++LFDVGGQR+ER+KWIH FE VTA+IFC A+S
Sbjct: 158 LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 137 EYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 194
EYDQ L EDE NRM E+ +LFD + F TS +LFLNK D+FE+K+ PL +C
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVC 275
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%)
Query: 24 TEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83
T PFS EL+ ++ LW D G+Q + S ++QL D AKY +++ R+ ++Y PTE+D++
Sbjct: 83 TLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAXEDYVPTEEDLI 142
Query: 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLH 143
R KTTGI E F K++ F L DVGGQRSERK W+ F DV IF +++EYD L+
Sbjct: 143 HNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLY 202
Query: 144 EDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200
ED T+R+ ES+ +F I N++ ++FLNK DLFEEK+ K PL FPEY G
Sbjct: 203 EDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDLFEEKLTKVPLNTIFPEYTG 259
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++ D
Sbjct: 349 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----- 403
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 404 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 435
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 400 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 435
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++ D
Sbjct: 27 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----- 81
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 82 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 113
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 78 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++ D
Sbjct: 27 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----- 81
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 82 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 113
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 78 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++ D
Sbjct: 39 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----- 93
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 94 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 125
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 90 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++ D
Sbjct: 40 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----- 94
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 95 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 126
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 91 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ D+V+
Sbjct: 47 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA 106
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+ +RM +L D++ +++F NK+DL
Sbjct: 107 RDELHRMLNEDELRDAV----------LLVFANKQDL 133
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGGQ R W H + +IF V ++ D
Sbjct: 27 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----- 81
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 82 -----RIDEARQELHRIINDREXRDAIILIFANKQDL 113
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 78 ADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ ++V
Sbjct: 192 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 251
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 252 REELMRMLAEDELRDAV----------LLVFANKQDL 278
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H +++ AIIF V ++ D++
Sbjct: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPG 204
E +M ++ ++I +++F NK DL P + E
Sbjct: 104 REELMKMLNEDEMRNAI----------LLVFANKHDL--------PQAMSISE------- 138
Query: 205 ERNRMQESLKLFDSICNNKWFTDTS 229
+ E L L +I N KW+ TS
Sbjct: 139 ----VTEKLGL-QTIKNRKWYCQTS 158
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGG R W H + +IF V ++ D
Sbjct: 29 TTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD----- 83
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 84 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 115
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 80 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 115
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGG R W H + +IF V ++ D
Sbjct: 30 TTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD----- 84
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 85 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 116
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 81 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KN+ F ++DVGG R W H + +IF V ++ D
Sbjct: 40 TTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD----- 94
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+ E+ + I N++ D I++F NK+DL
Sbjct: 95 -----RIDEARQELHRIINDREMRDAIILIFANKQDL 126
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
+R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 91 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 126
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ ++V
Sbjct: 27 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 86
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 87 REELMRMLAEDELRDAV----------LLVFANKQDL 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ ++V
Sbjct: 43 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 102
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 103 REELMRMLAEDELRDAV----------LLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H F++ +IF V ++ ++V
Sbjct: 44 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 104 REELMRMLAEDELRDAV----------LLVFANKQDL 130
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H + + +IF V ++ ++
Sbjct: 27 TTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA 86
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183
E RM D + N W ++F NK+DL E
Sbjct: 87 REVMQRMLNE----DELRNAAW------LVFANKQDLPE 115
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H + + +IF V ++ ++
Sbjct: 44 TTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183
E RM D + N W ++F NK+DL E
Sbjct: 104 REVMQRMLNE----DELRNAAW------LVFANKQDLPE 132
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G F+N++F ++DVGGQ R W H + + +IF V ++ +++
Sbjct: 44 TTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E +RM +L D+I I++F NK+DL
Sbjct: 104 REELHRMINEEELKDAI----------ILVFANKQDL 130
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G + N++F ++DVGGQ R W H + + +IF V ++ ++
Sbjct: 44 TTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183
E RM D +CN W ++F NK+DL E
Sbjct: 104 REVMQRMLNE----DELCNAAW------LVFANKQDLPE 132
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGGQ R W H + + +IF + ++ ++
Sbjct: 44 TTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEA 103
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183
E RM D + N W ++F NK+DL E
Sbjct: 104 REVMQRMLNE----DELRNAVW------LVFANKQDLPE 132
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN+ F ++DVGGQ R W H F++ +IF V ++ +++
Sbjct: 44 TTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERI--- 100
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E + +Q+ L L D + D ++LF NK+DL
Sbjct: 101 QEVADELQKML-LVDEL------RDAVLLLFANKQDL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN+ F ++DVGGQ R W H F++ +IF V ++ +
Sbjct: 56 TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE----- 110
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
R+QES + D +++F NK+D+
Sbjct: 111 -----RVQESADELQKMLQEDELRDAVLLVFANKQDM 142
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
S+KNL ++D+GGQ S R W + D A+IF V ++ D RM + K
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD----------RMSTASK 106
Query: 157 LFDSICNNKWFTDTSIILFLNKKD 180
+ + D ++++F NK+D
Sbjct: 107 ELHLMLQEEELQDAALLVFANKQD 130
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G +KN++F ++DVGG R W H F++ +IF V ++ ++V
Sbjct: 29 TTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 88
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
E RM +L D++ +++F NK+DL
Sbjct: 89 REELMRMLAEDELRDAV----------LLVFANKQDL 115
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 37/131 (28%)
Query: 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
H FK ++DVGGQ+S R W + FE +I+ V ++ RMQ+
Sbjct: 59 HRGFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQ 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPG--ERNRMQESL 213
+ S+ + ++++F NK+DL PG N +QE+L
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL---------------------PGALSXNAIQEAL 144
Query: 214 KLFDSICNNKW 224
+L DSI ++ W
Sbjct: 145 EL-DSIRSHHW 154
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KNL F+++D+GGQ S R W + + A+I+ V + D++
Sbjct: 29 TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS 88
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
M E +L +I +++F NK+D+
Sbjct: 89 KSELVAMLEEEELRKAI----------LVVFANKQDM 115
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 37/131 (28%)
Query: 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
H FK ++DVGGQ+S R W + FE +I+ V ++ RMQ+
Sbjct: 59 HRGFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQ 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGER--NRMQESL 213
+ S+ + ++++F NK+DL PG N +QE+L
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL---------------------PGALSCNAIQEAL 144
Query: 214 KLFDSICNNKW 224
+L DSI ++ W
Sbjct: 145 EL-DSIRSHHW 154
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+KN++F+++D+GGQ R W F D A+I+ V ++ D RM +
Sbjct: 61 LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD----------RMGVAKH 110
Query: 157 LFDSICNNKWFTDTSIILFLNKKDL 181
++ + + +++F NK+DL
Sbjct: 111 ELYALLDEDELRKSLLLIFANKQDL 135
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 37/131 (28%)
Query: 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
H FK ++DVGGQ+S R W + FE +I+ V ++ R Q+
Sbjct: 59 HRGFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRXQDCQ 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPG--ERNRMQESL 213
+ S+ + ++++F NK+DL PG N +QE+L
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL---------------------PGALSXNAIQEAL 144
Query: 214 KLFDSICNNKW 224
+L DSI ++ W
Sbjct: 145 EL-DSIRSHHW 154
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
H FK ++DVGGQ+S R W + FE +I+ V ++ RMQ+
Sbjct: 57 HRGFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQ 103
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ S+ + ++++F NK+DL
Sbjct: 104 RELQSLLVEERLAGATLLIFANKQDL 129
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 13/143 (9%)
Query: 39 WIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY-QPTEQDILRTRVKTTGIVEVHF 97
WI SG Y+ + K LD G + D L V T
Sbjct: 7 WIYSGFSSVLQFLGLYK--KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL 64
Query: 98 SFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157
+ + F FD+GG R+ W + + I+F V ++++++L ES +
Sbjct: 65 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLL----------ESKEE 114
Query: 158 FDSICNNKWFTDTSIILFLNKKD 180
DS+ ++ + I++ NK D
Sbjct: 115 LDSLMTDETIANVPILILGNKID 137
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 37/131 (28%)
Query: 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
H FK ++DVGG +S R W + FE +I+ V ++ RMQ+
Sbjct: 42 HRGFK---LNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQ 88
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGER--NRMQESL 213
+ S+ + ++++F NK+DL PG N +QE+L
Sbjct: 89 RELQSLLVEERLAGATLLIFANKQDL---------------------PGALSCNAIQEAL 127
Query: 214 KLFDSICNNKW 224
+L DSI ++ W
Sbjct: 128 EL-DSIRSHHW 137
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144
T + T G ++KNL F+++D+GG S R W + + A+I+ V + D++
Sbjct: 31 TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS 90
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
M E +L +I +++F NK+D+
Sbjct: 91 KSELVAMLEEEELRKAI----------LVVFANKQDM 117
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D L V T + + F FD+GG R+ W + + I+F V +++++
Sbjct: 45 DRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER 104
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD----LFEEKIKK 188
+L ES + DS+ ++ + I++ NK D + EE++++
Sbjct: 105 LL----------ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLRE 146
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 81 DILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140
D L V T + + F FD+GG R+ W + + I+F V +++++
Sbjct: 39 DRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHER 98
Query: 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD----LFEEKIKK 188
+L ES + DS+ ++ + I++ NK D + EE++++
Sbjct: 99 LL----------ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLRE 140
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+ N+ F FD+GG R+ W F +V I+F V ++ + R E+
Sbjct: 40 LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE----------RFDEARV 89
Query: 157 LFDSICNNKWFTDTSIILFLNKKD 180
D++ N D ++ NK D
Sbjct: 90 ELDALFNIAELKDVPFVILGNKID 113
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 59 SAKYFLDDLDRLGAKEY-QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERK 117
S K LD G + D L V T + + F FD+GG R+
Sbjct: 35 SGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARR 94
Query: 118 KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177
W + + I+F V +++ +R+ ES +++ ++ ++ I++ N
Sbjct: 95 VWKNYLPAINGIVFLVDCADH----------SRLVESKVELNALMTDETISNVPILILGN 144
Query: 178 KKD----LFEEKIKK 188
K D + EEK+++
Sbjct: 145 KIDRTDAISEEKLRE 159
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 57 NDSAKYFLDDLDRLGAKEY-QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSE 115
N K LD G + D L T T + N+ F FD+GG
Sbjct: 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQA 80
Query: 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILF 175
R+ W F +V I+F V ++ + R E+ D++ N D ++
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPE----------RFDEARVELDALFNIAELKDVPFVIL 130
Query: 176 LNKKD 180
NK D
Sbjct: 131 GNKID 135
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 141
T + T G ++KNL F+++D+GG S R W + + A+I+ V + D++
Sbjct: 34 TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRI 90
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT 148
T G F +L+F +FD+ GQ R W H +++ AIIF + S+
Sbjct: 54 TIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------R 103
Query: 149 NRMQESLKLFDSICNNKWFTD--TSIILFLNKKDLFE-------------EKIKKSPLTI 193
RM + + D++ N+ I+ F NK DL + E IK P I
Sbjct: 104 LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI 163
Query: 194 C 194
C
Sbjct: 164 C 164
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 17/129 (13%)
Query: 57 NDSAKYFLDDLDRLGAKE--YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRS 114
N K + LD G YQ +++ T VE KN +F ++D+GGQ S
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE-EIVVKNTHFLMWDIGGQES 72
Query: 115 ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM--QESLKLFDSICNNKWFTDTSI 172
R W + + II V + +++ E RM E L+ ++
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLR------------KAAV 120
Query: 173 ILFLNKKDL 181
++F NK+D+
Sbjct: 121 LIFANKQDM 129
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
+ T G + N+ KL+D+GGQ R W V+AI++ V ++ +++
Sbjct: 52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI----- 106
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+ S ++ + +++ NK+DL
Sbjct: 107 -----EASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 141
+ T G + N+ KL+D+GGQ R W V+AI++ V ++ +++
Sbjct: 61 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIF----------CVAMSEYDQVL-HED 145
F + F +FD+GG + R W ++++ A+IF CV SE +L HED
Sbjct: 58 FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHED 117
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
+ T G + N+ K++D+GGQ R W V AI++ + ++ +++
Sbjct: 52 IPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI----- 106
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+ S ++ + +++ NK+DL
Sbjct: 107 -----EASRNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 98 SFKNLNFKL--FDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
S ++ FKL +D+GGQR R W FE+ +I+ + + R +E+
Sbjct: 55 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETG 104
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLF 182
+ + + + +++F NK+DL
Sbjct: 105 QELTELLEEEKLSCVPVLIFANKQDLL 131
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 98 SFKNLNFKL--FDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
S ++ FKL +D+GGQR R W FE+ +I+ + + R +E+
Sbjct: 54 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETG 103
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLF 182
+ + + + +++F NK+DL
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDLL 130
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 98 SFKNLNFKL--FDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
S ++ FKL +D+GGQR R W FE+ +I+ + ++ R +E+
Sbjct: 42 SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR----------KRFEETG 91
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLF 182
+ + + + +++F NK+DL
Sbjct: 92 QELTELLEEEKLSCVPVLIFANKQDLL 118
>pdb|3H6S|E Chain E, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|F Chain F, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|G Chain G, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|H Chain H, Strucure Of Clitocypin - Cathepsin V Complex
Length = 152
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 82 ILRTRVKTTGI-VEVHFSFKNLNFKLFDVGGQRSERKKW 119
I+R ++ G+ VEV NL +K F V G +R W
Sbjct: 109 IIRAPIQRVGVDVEVGVQGNNLVYKFFPVDGSGGDRPAW 147
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 61 KYFLDDLDRLGAKE--YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKK 118
K + LD G YQ + +++ T VE N F ++D+GGQ S R
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRSS 81
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM--QESLKLFDSICNNKWFTDTSIILFL 176
W + + +I V ++ +++ E +M E L+ +++F
Sbjct: 82 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR------------KAGLLIFA 129
Query: 177 NKKDLFE 183
NK+D+ E
Sbjct: 130 NKQDVKE 136
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 61 KYFLDDLDRLGAKE--YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKK 118
K + LD G YQ + +++ T VE N F ++D+GGQ S R
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRSS 82
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM--QESLKLFDSICNNKWFTDTSIILFL 176
W + + +I V ++ +++ E +M E L+ +++F
Sbjct: 83 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR------------KAGLLIFA 130
Query: 177 NKKDLFE 183
NK+D+ E
Sbjct: 131 NKQDVKE 137
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 35 MKRLWIDSGVQECFGRSNEYQL-----NDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKT 89
+ + IDSG G EY L D + D LDRLG K Y + + + +++
Sbjct: 161 LAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRS 220
Query: 90 TGIVEVHFSFKNLNF 104
+ ++ NL+F
Sbjct: 221 SCVITAVGVKPNLDF 235
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 61 KYFLDDLDRLGAKE--YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKK 118
K + LD G YQ + +++ T VE N F ++D+GGQ S R
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRSS 76
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM--QESLKLFDSICNNKWFTDTSIILFL 176
W + + +I V ++ +++ E +M E L+ +++F
Sbjct: 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR------------KAGLLIFA 124
Query: 177 NKKDLFE 183
NK+D+ E
Sbjct: 125 NKQDVKE 131
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 61 KYFLDDLDRLGAKE--YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKK 118
K + LD G YQ + +++ T VE N F ++D+GGQ S R
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-EIVINNTRFLMWDIGGQESLRSS 76
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM--QESLKLFDSICNNKWFTDTSIILFL 176
W + + +I V ++ +++ E +M E L+ +++F
Sbjct: 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR------------KAGLLIFA 124
Query: 177 NKKDLFE 183
NK+D+ E
Sbjct: 125 NKQDVKE 131
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 92 IVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM 151
+ ++ K + L+D GQ + + D I+ C ++ D + + +
Sbjct: 43 VADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSL---ENIPEKW 99
Query: 152 QESLKLFDSICNNKWFTDTSIILFLNKKDLFEE--------KIKKSPLTICFPEYAGKRP 203
+K F C N IIL NKKDL + K+K+ P+ R
Sbjct: 100 TPEVKHF---CPN-----VPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRI 151
Query: 204 GERNRMQESLKLFDSI 219
G M+ S K D +
Sbjct: 152 GAFGYMECSAKTKDGV 167
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 98 SFKNLNFKL--FDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155
S ++ FKL +D+GG R R W FE+ +I+ + + R +E+
Sbjct: 42 SVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVI----------DSADRKRFEETG 91
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDLF 182
+ + + + +++F NK+DL
Sbjct: 92 QELTELLEEEKLSCVPVLIFANKQDLL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,804,490
Number of Sequences: 62578
Number of extensions: 310145
Number of successful extensions: 999
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 178
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)