Query psy6623
Match_columns 262
No_of_seqs 313 out of 2372
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 22:57:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082|consensus 100.0 2.9E-63 6.3E-68 438.0 16.0 234 4-237 97-338 (354)
2 KOG0085|consensus 100.0 3.6E-59 7.7E-64 384.7 3.5 232 4-237 103-343 (359)
3 cd00066 G-alpha G protein alph 100.0 2.4E-54 5.2E-59 384.9 17.8 233 4-237 64-305 (317)
4 smart00275 G_alpha G protein a 100.0 4.9E-54 1.1E-58 385.9 17.2 234 4-237 85-328 (342)
5 KOG0099|consensus 100.0 7E-55 1.5E-59 364.4 8.9 233 3-237 105-363 (379)
6 PF00503 G-alpha: G-protein al 100.0 1.2E-52 2.6E-57 384.4 14.3 234 4-237 129-384 (389)
7 KOG0070|consensus 99.9 3.1E-27 6.7E-32 189.5 7.1 145 75-246 35-179 (181)
8 KOG0071|consensus 99.9 2.8E-27 6.1E-32 180.9 5.4 133 86-244 45-177 (180)
9 KOG0084|consensus 99.9 8.8E-25 1.9E-29 176.7 5.4 136 67-237 26-166 (205)
10 KOG0092|consensus 99.9 2.4E-23 5.1E-28 167.8 6.9 138 65-237 20-161 (200)
11 PF00025 Arf: ADP-ribosylation 99.9 2.6E-22 5.7E-27 164.5 8.8 132 86-243 42-174 (175)
12 KOG0073|consensus 99.9 1.7E-22 3.6E-27 158.6 6.8 136 86-246 44-179 (185)
13 KOG0094|consensus 99.9 2.8E-22 6.1E-27 161.7 7.8 138 66-237 38-179 (221)
14 KOG0078|consensus 99.9 2.1E-22 4.6E-27 164.9 4.2 146 57-237 19-168 (207)
15 PLN00223 ADP-ribosylation fact 99.9 1.2E-21 2.7E-26 161.3 8.8 131 87-244 46-177 (181)
16 KOG0087|consensus 99.9 4.6E-22 1E-26 162.5 5.2 147 56-237 20-170 (222)
17 KOG0072|consensus 99.8 1.4E-21 3E-26 150.4 5.8 136 85-246 45-180 (182)
18 KOG0075|consensus 99.8 4.9E-21 1.1E-25 147.8 7.2 130 86-245 49-182 (186)
19 KOG0098|consensus 99.8 1.2E-21 2.6E-26 156.9 3.6 136 67-237 23-162 (216)
20 smart00177 ARF ARF-like small 99.8 1.1E-20 2.5E-25 154.5 8.7 131 87-243 42-172 (175)
21 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.9E-21 8.5E-26 154.9 5.2 126 87-236 29-154 (159)
22 KOG0076|consensus 99.8 1.5E-21 3.3E-26 154.7 2.4 163 57-247 25-189 (197)
23 cd04120 Rab12 Rab12 subfamily. 99.8 2.6E-20 5.6E-25 156.1 9.5 124 87-237 30-157 (202)
24 cd04149 Arf6 Arf6 subfamily. 99.8 2.2E-20 4.7E-25 152.0 8.6 128 87-241 38-166 (168)
25 KOG0080|consensus 99.8 1.2E-20 2.5E-25 147.9 5.4 147 65-246 26-176 (209)
26 KOG0095|consensus 99.8 8.9E-21 1.9E-25 146.8 4.4 136 67-237 24-163 (213)
27 KOG0093|consensus 99.8 1.5E-20 3.3E-25 145.1 4.3 136 67-237 38-177 (193)
28 PTZ00133 ADP-ribosylation fact 99.8 7E-20 1.5E-24 150.9 8.2 132 87-244 46-177 (182)
29 cd04158 ARD1 ARD1 subfamily. 99.8 7.5E-20 1.6E-24 148.7 7.9 134 87-245 28-161 (169)
30 cd04121 Rab40 Rab40 subfamily. 99.8 1.7E-19 3.7E-24 149.7 10.1 122 87-237 36-161 (189)
31 cd04161 Arl2l1_Arl13_like Arl2 99.8 8.9E-20 1.9E-24 148.1 8.1 131 86-242 27-166 (167)
32 PTZ00099 rab6; Provisional 99.8 2.4E-19 5.2E-24 147.1 10.5 129 86-244 9-141 (176)
33 KOG0091|consensus 99.8 6.8E-21 1.5E-25 149.5 1.0 148 56-237 14-167 (213)
34 smart00176 RAN Ran (Ras-relate 99.8 2.1E-19 4.7E-24 150.3 8.3 125 87-244 25-153 (200)
35 KOG0086|consensus 99.8 4.9E-20 1.1E-24 143.2 3.8 134 67-237 26-165 (214)
36 KOG0079|consensus 99.8 6.5E-20 1.4E-24 141.8 4.3 124 85-237 36-163 (198)
37 cd01875 RhoG RhoG subfamily. 99.8 6E-19 1.3E-23 146.4 8.8 121 100-237 49-171 (191)
38 KOG0074|consensus 99.8 4.2E-19 9.1E-24 136.4 6.5 131 87-243 46-177 (185)
39 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 6.9E-19 1.5E-23 142.5 8.1 125 87-237 29-160 (164)
40 cd04133 Rop_like Rop subfamily 99.8 2.3E-18 4.9E-23 141.3 10.5 119 100-237 47-167 (176)
41 KOG0081|consensus 99.8 9.3E-20 2E-24 142.6 1.6 136 68-237 27-175 (219)
42 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.4E-18 5.2E-23 140.9 9.9 120 101-237 48-169 (175)
43 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3.5E-18 7.5E-23 139.5 9.3 109 101-236 49-157 (172)
44 cd04122 Rab14 Rab14 subfamily. 99.8 4.4E-18 9.6E-23 137.5 9.6 123 87-237 32-158 (166)
45 KOG0083|consensus 99.8 2.6E-19 5.5E-24 136.3 2.0 124 86-237 27-154 (192)
46 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.8E-18 4E-23 141.2 7.0 128 87-241 44-172 (174)
47 cd04157 Arl6 Arl6 subfamily. 99.7 2.5E-18 5.4E-23 137.7 7.4 127 86-236 29-157 (162)
48 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 5.1E-18 1.1E-22 140.0 8.8 122 100-238 51-175 (182)
49 cd04128 Spg1 Spg1p. Spg1p (se 99.7 8.7E-18 1.9E-22 138.5 9.6 127 87-237 30-160 (182)
50 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 8.5E-18 1.9E-22 140.4 9.6 124 87-237 30-162 (201)
51 cd04126 Rab20 Rab20 subfamily. 99.7 1.4E-17 3E-22 141.3 10.6 139 87-237 29-184 (220)
52 cd04154 Arl2 Arl2 subfamily. 99.7 7E-18 1.5E-22 137.4 8.5 125 87-236 43-168 (173)
53 PLN03071 GTP-binding nuclear p 99.7 5.3E-18 1.1E-22 143.9 7.8 125 87-244 43-171 (219)
54 cd04175 Rap1 Rap1 subgroup. T 99.7 1.1E-17 2.4E-22 134.7 9.1 115 101-244 48-162 (164)
55 cd04127 Rab27A Rab27a subfamil 99.7 1.6E-17 3.4E-22 135.8 9.3 110 101-237 62-171 (180)
56 smart00178 SAR Sar1p-like memb 99.7 7.1E-18 1.5E-22 139.1 6.7 136 87-243 46-183 (184)
57 cd04151 Arl1 Arl1 subfamily. 99.7 1.1E-17 2.4E-22 134.1 7.3 126 87-236 28-153 (158)
58 cd04136 Rap_like Rap-like subf 99.7 2.3E-17 5.1E-22 132.2 9.1 109 101-236 48-156 (163)
59 cd04176 Rap2 Rap2 subgroup. T 99.7 3.4E-17 7.4E-22 131.6 9.9 114 101-243 48-161 (163)
60 cd00877 Ran Ran (Ras-related n 99.7 2.3E-17 5.1E-22 133.7 8.9 126 87-245 30-159 (166)
61 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.1E-17 4.5E-22 136.2 8.7 126 87-237 32-164 (183)
62 cd04117 Rab15 Rab15 subfamily. 99.7 9E-18 1.9E-22 135.4 6.3 134 68-236 18-155 (161)
63 KOG0394|consensus 99.7 1.7E-18 3.8E-23 138.6 1.7 130 85-237 37-172 (210)
64 cd01865 Rab3 Rab3 subfamily. 99.7 3.8E-17 8.3E-22 132.0 9.4 123 87-237 31-157 (165)
65 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 5.9E-18 1.3E-22 144.5 4.9 121 100-237 59-182 (232)
66 cd04131 Rnd Rnd subfamily. Th 99.7 9.6E-18 2.1E-22 137.8 5.0 120 100-237 47-170 (178)
67 cd00879 Sar1 Sar1 subfamily. 99.7 5.4E-17 1.2E-21 134.0 9.2 141 87-243 48-189 (190)
68 PTZ00369 Ras-like protein; Pro 99.7 5.1E-17 1.1E-21 134.5 8.9 111 100-237 51-161 (189)
69 cd04109 Rab28 Rab28 subfamily. 99.7 5.9E-17 1.3E-21 136.9 9.4 124 87-237 30-160 (215)
70 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.6E-17 7.7E-22 131.9 7.3 132 86-241 34-165 (167)
71 cd04156 ARLTS1 ARLTS1 subfamil 99.7 6.1E-17 1.3E-21 129.6 8.2 126 87-236 28-155 (160)
72 cd01871 Rac1_like Rac1-like su 99.7 8.1E-17 1.8E-21 131.7 8.8 121 100-237 47-169 (174)
73 cd04103 Centaurin_gamma Centau 99.7 9.8E-17 2.1E-21 129.2 9.0 115 94-237 37-153 (158)
74 KOG0088|consensus 99.7 1.2E-17 2.6E-22 130.7 3.2 110 100-237 60-169 (218)
75 cd04111 Rab39 Rab39 subfamily. 99.7 1.2E-16 2.7E-21 134.7 9.5 124 87-237 32-160 (211)
76 cd04144 Ras2 Ras2 subfamily. 99.7 1E-16 2.3E-21 132.7 8.8 110 101-237 46-157 (190)
77 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.3E-16 2.7E-21 135.6 9.1 123 100-238 47-171 (222)
78 cd04119 RJL RJL (RabJ-Like) su 99.7 1.9E-16 4E-21 127.2 9.3 124 87-237 30-161 (168)
79 cd04134 Rho3 Rho3 subfamily. 99.7 1.8E-16 3.8E-21 131.3 9.3 120 100-236 46-167 (189)
80 cd04116 Rab9 Rab9 subfamily. 99.7 5.8E-17 1.3E-21 131.3 6.0 124 87-237 35-165 (170)
81 cd04110 Rab35 Rab35 subfamily. 99.7 1.9E-16 4.1E-21 132.2 9.2 122 87-237 36-161 (199)
82 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 2.5E-16 5.3E-21 128.3 9.2 126 87-237 30-159 (170)
83 KOG0097|consensus 99.7 2.4E-17 5.3E-22 126.8 2.9 124 86-237 40-167 (215)
84 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.4E-16 7.4E-21 127.1 9.7 123 87-236 32-162 (170)
85 cd01867 Rab8_Rab10_Rab13_like 99.7 3.2E-16 6.9E-21 126.8 9.5 123 87-237 33-159 (167)
86 cd04124 RabL2 RabL2 subfamily. 99.7 3.8E-16 8.3E-21 125.8 9.7 106 100-237 47-152 (161)
87 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.1E-16 4.5E-21 126.2 8.0 108 101-236 48-155 (162)
88 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 4.3E-16 9.3E-21 125.7 9.3 123 87-237 32-158 (166)
89 PLN03110 Rab GTPase; Provision 99.6 1.6E-16 3.5E-21 134.4 6.0 123 87-237 42-168 (216)
90 cd01868 Rab11_like Rab11-like. 99.6 7.8E-16 1.7E-20 123.9 9.5 122 87-237 33-159 (165)
91 cd04143 Rhes_like Rhes_like su 99.6 9.2E-16 2E-20 132.4 10.2 110 101-237 47-165 (247)
92 cd01873 RhoBTB RhoBTB subfamil 99.6 7.3E-16 1.6E-20 128.5 9.2 121 100-237 64-190 (195)
93 cd04132 Rho4_like Rho4-like su 99.6 1.1E-15 2.4E-20 125.8 10.1 112 101-237 48-161 (187)
94 cd04159 Arl10_like Arl10-like 99.6 2.6E-16 5.6E-21 124.6 5.7 125 87-236 29-154 (159)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.6 9.1E-16 2E-20 123.1 8.7 110 101-237 49-158 (164)
96 cd04140 ARHI_like ARHI subfami 99.6 9.2E-16 2E-20 123.9 8.8 110 100-236 47-158 (165)
97 smart00173 RAS Ras subfamily o 99.6 8.9E-16 1.9E-20 123.3 8.7 110 100-236 46-155 (164)
98 cd01866 Rab2 Rab2 subfamily. 99.6 1.4E-15 3E-20 123.3 9.5 122 87-236 34-159 (168)
99 cd04125 RabA_like RabA-like su 99.6 4E-16 8.7E-21 128.8 6.3 109 101-237 48-156 (188)
100 PF00071 Ras: Ras family; Int 99.6 1.3E-15 2.7E-20 122.2 8.9 123 87-237 29-155 (162)
101 cd01860 Rab5_related Rab5-rela 99.6 1.7E-15 3.6E-20 121.5 9.6 109 100-236 48-156 (163)
102 cd01864 Rab19 Rab19 subfamily. 99.6 1.5E-15 3.4E-20 122.4 9.4 122 87-236 33-159 (165)
103 cd04113 Rab4 Rab4 subfamily. 99.6 1.6E-15 3.5E-20 121.5 9.5 108 101-236 48-155 (161)
104 cd04106 Rab23_lke Rab23-like s 99.6 1.1E-15 2.4E-20 122.4 8.5 111 101-242 50-160 (162)
105 cd00878 Arf_Arl Arf (ADP-ribos 99.6 9.5E-16 2.1E-20 122.5 7.9 126 86-236 27-153 (158)
106 cd04112 Rab26 Rab26 subfamily. 99.6 2E-15 4.3E-20 125.1 10.0 123 87-237 31-157 (191)
107 cd01861 Rab6 Rab6 subfamily. 99.6 3E-15 6.4E-20 119.8 9.4 122 87-236 30-155 (161)
108 smart00174 RHO Rho (Ras homolo 99.6 5.6E-15 1.2E-19 119.9 10.2 120 101-237 45-166 (174)
109 PLN03108 Rab family protein; P 99.6 3.6E-15 7.8E-20 125.6 9.3 123 87-237 36-162 (210)
110 cd04142 RRP22 RRP22 subfamily. 99.6 3.2E-15 6.9E-20 124.9 8.8 119 102-248 49-178 (198)
111 cd04130 Wrch_1 Wrch-1 subfamil 99.6 4.4E-15 9.6E-20 120.9 9.1 123 101-240 47-171 (173)
112 cd01892 Miro2 Miro2 subfamily. 99.6 2.8E-15 6E-20 121.9 7.4 106 102-237 54-160 (169)
113 cd04177 RSR1 RSR1 subgroup. R 99.6 4.8E-15 1E-19 120.0 8.7 112 100-237 47-158 (168)
114 cd01863 Rab18 Rab18 subfamily. 99.6 4.2E-15 9.1E-20 119.0 8.3 109 101-237 48-156 (161)
115 cd04118 Rab24 Rab24 subfamily. 99.6 7.3E-15 1.6E-19 121.6 9.8 126 87-237 31-160 (193)
116 cd04123 Rab21 Rab21 subfamily. 99.6 7.5E-15 1.6E-19 117.1 9.4 109 100-236 47-155 (162)
117 cd04101 RabL4 RabL4 (Rab-like4 99.6 7.5E-15 1.6E-19 117.9 9.2 107 101-236 51-157 (164)
118 PLN03118 Rab family protein; P 99.6 8.4E-15 1.8E-19 123.3 9.4 124 87-237 43-171 (211)
119 cd04155 Arl3 Arl3 subfamily. 99.6 5.5E-15 1.2E-19 119.9 8.0 129 87-241 43-171 (173)
120 cd04102 RabL3 RabL3 (Rab-like3 99.6 7.1E-15 1.5E-19 123.1 8.4 102 67-185 17-145 (202)
121 cd04147 Ras_dva Ras-dva subfam 99.6 1.2E-14 2.5E-19 121.2 9.5 110 102-237 47-157 (198)
122 cd01862 Rab7 Rab7 subfamily. 99.6 1.7E-14 3.6E-19 116.6 9.6 110 101-237 48-161 (172)
123 cd04135 Tc10 TC10 subfamily. 99.6 2E-14 4.4E-19 116.7 9.7 121 101-237 47-168 (174)
124 KOG0395|consensus 99.6 2.1E-14 4.6E-19 119.6 10.0 131 72-237 29-159 (196)
125 smart00175 RAB Rab subfamily o 99.5 3E-14 6.6E-19 114.1 9.3 123 87-237 30-156 (164)
126 PLN00023 GTP-binding protein; 99.5 2E-14 4.3E-19 127.1 8.2 74 101-184 82-166 (334)
127 cd04146 RERG_RasL11_like RERG/ 99.5 3.8E-14 8.3E-19 114.2 8.7 111 100-237 45-158 (165)
128 cd04148 RGK RGK subfamily. Th 99.5 8.3E-14 1.8E-18 118.3 9.6 109 100-237 48-157 (221)
129 cd01870 RhoA_like RhoA-like su 99.5 1.1E-13 2.5E-18 112.3 9.4 122 100-236 47-168 (175)
130 cd04137 RheB Rheb (Ras Homolog 99.5 7.5E-14 1.6E-18 114.1 7.8 110 101-237 48-157 (180)
131 cd01893 Miro1 Miro1 subfamily. 99.5 9.3E-14 2E-18 112.3 8.1 114 100-237 45-158 (166)
132 cd04139 RalA_RalB RalA/RalB su 99.5 1.4E-13 3E-18 110.1 8.6 111 100-237 46-156 (164)
133 cd00154 Rab Rab family. Rab G 99.5 1.7E-13 3.6E-18 108.3 8.8 122 87-236 30-155 (159)
134 cd04114 Rab30 Rab30 subfamily. 99.5 4.5E-14 9.8E-19 113.9 5.3 122 87-237 37-163 (169)
135 PTZ00132 GTP-binding nuclear p 99.5 1.7E-13 3.6E-18 115.7 8.2 119 87-236 39-161 (215)
136 cd00876 Ras Ras family. The R 99.4 5E-13 1.1E-17 106.3 8.8 109 101-236 46-154 (160)
137 KOG0393|consensus 99.4 3.4E-13 7.4E-18 111.0 7.9 143 70-239 28-175 (198)
138 cd01890 LepA LepA subfamily. 99.4 3.9E-13 8.5E-18 109.5 6.7 112 100-244 65-176 (179)
139 cd04171 SelB SelB subfamily. 99.4 8.7E-13 1.9E-17 105.4 7.6 118 89-236 37-159 (164)
140 cd00157 Rho Rho (Ras homology) 99.4 1.8E-12 3.9E-17 104.5 9.3 121 100-237 46-167 (171)
141 COG1100 GTPase SAR1 and relate 99.4 1.1E-12 2.4E-17 110.4 7.6 124 101-238 53-180 (219)
142 KOG0077|consensus 99.4 4E-13 8.6E-18 106.2 3.8 134 94-243 56-191 (193)
143 cd04129 Rho2 Rho2 subfamily. 99.4 3.2E-12 6.9E-17 105.5 9.3 119 101-237 48-167 (187)
144 KOG4252|consensus 99.3 2E-13 4.3E-18 109.2 0.8 135 67-237 37-175 (246)
145 cd01891 TypA_BipA TypA (tyrosi 99.3 4.6E-12 1E-16 105.2 8.3 110 94-234 57-173 (194)
146 KOG0096|consensus 99.3 2.3E-12 4.9E-17 104.1 5.6 131 85-248 38-172 (216)
147 cd01897 NOG NOG1 is a nucleola 99.3 6.8E-12 1.5E-16 101.0 6.3 119 88-236 33-161 (168)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 6.1E-12 1.3E-16 101.1 5.2 109 101-236 49-159 (168)
149 PRK04213 GTP-binding protein; 99.2 3.3E-11 7.1E-16 100.3 8.4 122 103-248 53-195 (201)
150 cd04105 SR_beta Signal recogni 99.2 2.2E-11 4.7E-16 102.2 7.0 74 101-183 47-123 (203)
151 cd00881 GTP_translation_factor 99.2 4.5E-11 9.7E-16 97.7 8.0 119 93-244 53-186 (189)
152 cd01898 Obg Obg subfamily. Th 99.2 1.8E-11 3.9E-16 98.7 4.6 112 97-236 42-164 (170)
153 TIGR00231 small_GTP small GTP- 99.2 4.1E-11 8.8E-16 94.0 5.7 120 88-236 32-157 (161)
154 KOG3883|consensus 99.1 8.3E-11 1.8E-15 92.0 6.3 149 71-256 36-186 (198)
155 PRK12299 obgE GTPase CgtA; Rev 99.1 1.4E-10 2.9E-15 104.4 8.6 115 96-237 199-322 (335)
156 cd01879 FeoB Ferrous iron tran 99.1 1.5E-10 3.2E-15 92.0 7.8 113 89-236 30-150 (158)
157 cd00882 Ras_like_GTPase Ras-li 99.1 1.5E-10 3.2E-15 89.6 7.4 110 101-236 44-153 (157)
158 COG2229 Predicted GTPase [Gene 99.1 1.8E-10 3.8E-15 93.0 7.7 120 85-237 50-172 (187)
159 cd01878 HflX HflX subfamily. 99.1 2E-10 4.2E-15 95.9 8.2 115 88-236 74-198 (204)
160 TIGR01393 lepA GTP-binding pro 99.1 3.2E-10 6.9E-15 109.2 9.9 110 102-244 70-179 (595)
161 cd01881 Obg_like The Obg-like 99.1 2.5E-10 5.3E-15 92.3 7.2 120 95-236 36-170 (176)
162 cd01883 EF1_alpha Eukaryotic e 99.1 2.3E-10 5.1E-15 96.9 7.1 128 87-232 62-194 (219)
163 cd01888 eIF2_gamma eIF2-gamma 99.1 1.9E-10 4E-15 96.4 6.4 114 102-246 83-200 (203)
164 cd01889 SelB_euk SelB subfamil 99.1 3.4E-10 7.3E-15 93.8 6.7 117 101-245 67-186 (192)
165 KOG1673|consensus 99.1 2E-10 4.4E-15 90.0 4.9 128 85-237 48-180 (205)
166 PRK15494 era GTPase Era; Provi 99.0 7E-10 1.5E-14 100.1 8.5 129 88-254 86-223 (339)
167 TIGR03156 GTP_HflX GTP-binding 99.0 3.7E-10 7.9E-15 102.3 6.3 114 88-236 222-345 (351)
168 TIGR00487 IF-2 translation ini 99.0 1.1E-09 2.4E-14 105.1 9.7 111 95-237 127-244 (587)
169 PRK05433 GTP-binding protein L 99.0 1.1E-09 2.4E-14 105.6 9.3 111 101-244 73-183 (600)
170 TIGR02729 Obg_CgtA Obg family 99.0 1.3E-09 2.9E-14 97.8 8.7 121 87-236 193-322 (329)
171 PRK03003 GTP-binding protein D 99.0 1.1E-09 2.3E-14 103.2 8.2 108 94-237 78-193 (472)
172 cd01894 EngA1 EngA1 subfamily. 99.0 1.7E-09 3.8E-14 85.5 8.0 107 93-236 36-151 (157)
173 TIGR02528 EutP ethanolamine ut 99.0 8.6E-11 1.9E-15 92.2 0.0 95 105-236 38-138 (142)
174 TIGR03594 GTPase_EngA ribosome 99.0 1.3E-09 2.9E-14 101.1 7.9 114 95-237 213-338 (429)
175 PF08477 Miro: Miro-like prote 99.0 6.3E-10 1.4E-14 84.6 4.7 78 91-180 39-119 (119)
176 PRK05306 infB translation init 99.0 1.1E-09 2.3E-14 107.9 7.0 113 95-237 330-446 (787)
177 TIGR00475 selB selenocysteine- 98.9 2.4E-09 5.1E-14 103.0 7.5 120 89-237 37-160 (581)
178 PRK03003 GTP-binding protein D 98.9 2.3E-09 4.9E-14 100.9 6.8 113 95-237 252-376 (472)
179 PF00009 GTP_EFTU: Elongation 98.9 6.8E-09 1.5E-13 85.7 8.7 119 88-237 54-181 (188)
180 TIGR00483 EF-1_alpha translati 98.9 1.9E-09 4.1E-14 100.2 6.0 129 87-236 70-200 (426)
181 PRK12296 obgE GTPase CgtA; Rev 98.9 4.4E-09 9.5E-14 98.6 8.3 129 88-237 192-334 (500)
182 CHL00189 infB translation init 98.9 4.4E-09 9.5E-14 102.8 7.9 109 101-237 294-404 (742)
183 PRK05291 trmE tRNA modificatio 98.9 3.1E-09 6.8E-14 99.3 6.5 107 89-237 250-364 (449)
184 PRK12297 obgE GTPase CgtA; Rev 98.9 1E-08 2.2E-13 94.8 9.4 114 96-237 199-321 (424)
185 cd04166 CysN_ATPS CysN_ATPS su 98.8 6.6E-09 1.4E-13 87.4 6.9 123 87-234 62-185 (208)
186 TIGR00450 mnmE_trmE_thdF tRNA 98.8 8.5E-09 1.8E-13 96.1 7.1 106 92-237 241-354 (442)
187 PRK12317 elongation factor 1-a 98.8 1.1E-08 2.3E-13 95.2 7.6 126 86-236 68-198 (425)
188 TIGR00437 feoB ferrous iron tr 98.8 8.6E-09 1.9E-13 99.3 7.0 111 92-237 31-149 (591)
189 PRK00093 GTP-binding protein D 98.8 8.5E-09 1.8E-13 96.0 6.8 108 92-237 39-156 (435)
190 PRK10218 GTP-binding protein; 98.8 1.3E-08 2.7E-13 98.1 7.7 107 93-230 59-172 (607)
191 TIGR01394 TypA_BipA GTP-bindin 98.8 9E-09 2E-13 99.1 6.5 83 86-183 48-130 (594)
192 PRK11058 GTPase HflX; Provisio 98.8 9.7E-09 2.1E-13 95.3 6.3 122 89-244 231-361 (426)
193 PRK15467 ethanolamine utilizat 98.8 7.9E-09 1.7E-13 83.1 5.0 97 106-237 41-141 (158)
194 cd04164 trmE TrmE (MnmE, ThdF, 98.8 2.4E-08 5.2E-13 78.8 7.6 102 94-236 41-150 (157)
195 TIGR00491 aIF-2 translation in 98.8 2.5E-08 5.4E-13 95.8 8.3 66 103-183 70-135 (590)
196 KOG4423|consensus 98.7 5.3E-09 1.2E-13 84.5 2.8 109 102-236 75-187 (229)
197 PRK00454 engB GTP-binding prot 98.7 3.8E-08 8.2E-13 81.2 7.4 112 101-244 69-193 (196)
198 cd01895 EngA2 EngA2 subfamily. 98.7 2.7E-08 5.9E-13 79.6 5.9 115 95-237 43-169 (174)
199 PRK09518 bifunctional cytidyla 98.7 5.2E-08 1.1E-12 96.1 9.0 104 98-237 319-430 (712)
200 cd04168 TetM_like Tet(M)-like 98.7 4.2E-08 9.2E-13 84.2 7.1 83 86-183 48-130 (237)
201 TIGR00436 era GTP-binding prot 98.7 1.1E-07 2.3E-12 83.2 9.5 112 100-247 46-166 (270)
202 TIGR03594 GTPase_EngA ribosome 98.7 6.7E-08 1.4E-12 89.8 7.9 108 93-237 38-154 (429)
203 TIGR03598 GTPase_YsxC ribosome 98.6 1.2E-07 2.5E-12 77.6 8.3 100 103-232 65-179 (179)
204 cd04169 RF3 RF3 subfamily. Pe 98.6 6.4E-08 1.4E-12 84.5 6.9 83 86-183 55-137 (267)
205 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 4.4E-08 9.6E-13 83.5 5.4 138 73-236 21-169 (232)
206 cd01885 EF2 EF2 (for archaea a 98.6 7.9E-08 1.7E-12 81.7 6.9 67 101-182 72-138 (222)
207 TIGR03680 eif2g_arch translati 98.6 2.6E-08 5.6E-13 92.1 3.9 113 101-243 79-194 (406)
208 PRK00093 GTP-binding protein D 98.6 1.2E-07 2.5E-12 88.4 8.2 112 96-237 215-338 (435)
209 KOG0090|consensus 98.6 1.9E-07 4E-12 77.4 7.8 111 55-184 45-160 (238)
210 PRK09518 bifunctional cytidyla 98.6 8.6E-08 1.9E-12 94.6 6.5 113 95-237 491-615 (712)
211 cd00880 Era_like Era (E. coli 98.6 8.8E-08 1.9E-12 74.9 5.4 106 101-236 44-157 (163)
212 TIGR00157 ribosome small subun 98.6 9.3E-08 2E-12 82.5 5.7 93 113-237 24-117 (245)
213 PF09439 SRPRB: Signal recogni 98.5 6.5E-08 1.4E-12 79.3 3.8 76 100-184 47-127 (181)
214 PF02421 FeoB_N: Ferrous iron 98.5 3.3E-07 7.1E-12 73.5 6.6 114 88-236 33-154 (156)
215 PRK10512 selenocysteinyl-tRNA- 98.5 2.2E-07 4.8E-12 89.9 6.6 121 87-237 35-160 (614)
216 PRK12298 obgE GTPase CgtA; Rev 98.5 7.4E-07 1.6E-11 81.8 9.0 118 97-237 201-327 (390)
217 cd01896 DRG The developmentall 98.4 5.6E-07 1.2E-11 77.1 7.4 50 89-138 34-90 (233)
218 cd01886 EF-G Elongation factor 98.4 5.7E-07 1.2E-11 78.7 7.6 83 86-183 48-130 (270)
219 cd01884 EF_Tu EF-Tu subfamily. 98.4 5.2E-07 1.1E-11 75.2 6.9 118 87-233 50-173 (195)
220 PRK04000 translation initiatio 98.4 2E-07 4.4E-12 86.3 4.9 108 102-237 85-195 (411)
221 cd04163 Era Era subfamily. Er 98.4 1.2E-06 2.5E-11 69.3 8.6 104 100-236 49-162 (168)
222 cd04170 EF-G_bact Elongation f 98.4 1.1E-06 2.4E-11 76.7 9.0 83 86-183 48-130 (268)
223 cd04167 Snu114p Snu114p subfam 98.4 6.9E-07 1.5E-11 75.2 7.3 67 101-182 70-136 (213)
224 PRK04004 translation initiatio 98.4 4.1E-07 8.9E-12 87.7 6.6 64 104-182 73-136 (586)
225 PRK00741 prfC peptide chain re 98.4 5.9E-07 1.3E-11 85.5 6.9 82 87-183 64-145 (526)
226 PRK13351 elongation factor G; 98.4 5.5E-07 1.2E-11 88.6 6.7 84 85-183 56-139 (687)
227 PRK00089 era GTPase Era; Revie 98.3 5.9E-07 1.3E-11 79.3 5.3 115 100-247 51-173 (292)
228 PRK14845 translation initiatio 98.3 1E-06 2.2E-11 89.1 6.5 64 104-182 528-591 (1049)
229 PLN00043 elongation factor 1-a 98.3 1.9E-06 4.1E-11 80.6 7.7 129 86-233 69-203 (447)
230 TIGR00503 prfC peptide chain r 98.3 1.7E-06 3.7E-11 82.4 7.3 79 89-182 67-145 (527)
231 KOG0462|consensus 98.2 2.5E-06 5.3E-11 79.5 7.0 146 61-237 74-229 (650)
232 TIGR02034 CysN sulfate adenyly 98.2 3E-06 6.6E-11 78.4 6.9 124 86-234 64-188 (406)
233 cd04165 GTPBP1_like GTPBP1-lik 98.2 4.9E-06 1.1E-10 70.8 7.4 125 96-236 78-216 (224)
234 TIGR00484 EF-G translation elo 98.2 3.8E-06 8.3E-11 82.7 6.9 82 87-183 60-141 (689)
235 TIGR00485 EF-Tu translation el 98.2 5.7E-06 1.2E-10 76.3 7.5 81 88-183 61-142 (394)
236 PRK09554 feoB ferrous iron tra 98.1 6.3E-06 1.4E-10 81.8 7.8 109 94-237 42-162 (772)
237 PRK12740 elongation factor G; 98.1 4.4E-06 9.4E-11 82.1 6.6 84 85-183 43-126 (668)
238 COG0532 InfB Translation initi 98.1 9.2E-06 2E-10 75.7 8.1 110 101-238 54-165 (509)
239 PRK05124 cysN sulfate adenylyl 98.1 4.8E-06 1E-10 78.5 5.9 123 86-235 91-217 (474)
240 cd01876 YihA_EngB The YihA (En 98.1 1.1E-05 2.5E-10 63.8 6.6 104 103-236 46-164 (170)
241 PRK12736 elongation factor Tu; 98.0 1.1E-05 2.4E-10 74.4 7.2 79 89-182 62-141 (394)
242 PRK13768 GTPase; Provisional 98.0 4.3E-06 9.4E-11 72.5 3.1 130 102-245 97-247 (253)
243 PRK05506 bifunctional sulfate 98.0 1.7E-05 3.7E-10 77.4 7.5 121 87-234 89-212 (632)
244 TIGR03597 GTPase_YqeH ribosome 98.0 3.2E-06 7E-11 77.0 2.3 95 112-237 50-147 (360)
245 PTZ00141 elongation factor 1- 98.0 1.7E-05 3.6E-10 74.3 6.8 128 87-233 70-203 (446)
246 cd01855 YqeH YqeH. YqeH is an 98.0 4.3E-06 9.3E-11 69.1 2.4 92 115-237 24-119 (190)
247 PRK12735 elongation factor Tu; 97.9 1.1E-05 2.4E-10 74.5 5.2 80 89-183 62-142 (396)
248 KOG1144|consensus 97.9 1.3E-05 2.9E-10 77.0 4.9 117 104-235 542-679 (1064)
249 KOG1145|consensus 97.9 4.5E-05 9.8E-10 71.3 8.0 110 100-240 199-313 (683)
250 CHL00071 tufA elongation facto 97.9 3E-05 6.5E-10 71.9 7.0 80 89-183 62-142 (409)
251 KOG1489|consensus 97.9 3.9E-05 8.4E-10 67.4 7.2 119 87-236 232-360 (366)
252 PLN03126 Elongation factor Tu; 97.9 3.2E-05 7E-10 72.9 7.2 76 93-183 135-211 (478)
253 COG0486 ThdF Predicted GTPase 97.9 2.7E-05 5.9E-10 71.7 6.2 112 88-237 251-370 (454)
254 PF06858 NOG1: Nucleolar GTP-b 97.9 3.2E-05 6.9E-10 50.9 4.8 45 126-180 14-58 (58)
255 KOG3886|consensus 97.8 1.6E-05 3.6E-10 66.8 3.9 84 87-183 37-130 (295)
256 PRK12739 elongation factor G; 97.8 3.2E-05 6.9E-10 76.3 6.5 83 86-183 57-139 (691)
257 COG1160 Predicted GTPases [Gen 97.8 4.5E-05 9.7E-10 70.1 6.8 116 94-237 218-345 (444)
258 COG0481 LepA Membrane GTPase L 97.8 7.7E-05 1.7E-09 68.8 7.2 122 85-237 54-180 (603)
259 COG1084 Predicted GTPase [Gene 97.7 7.4E-05 1.6E-09 66.0 6.5 84 87-182 200-293 (346)
260 PTZ00327 eukaryotic translatio 97.7 4.6E-05 1E-09 71.4 5.5 105 103-236 118-226 (460)
261 cd01859 MJ1464 MJ1464. This f 97.7 3.7E-05 8.1E-10 61.3 3.8 88 116-237 3-90 (156)
262 TIGR00490 aEF-2 translation el 97.7 5.6E-05 1.2E-09 74.9 5.6 83 86-183 66-152 (720)
263 PRK00098 GTPase RsgA; Reviewed 97.6 8.4E-05 1.8E-09 66.0 5.7 83 123-236 78-160 (298)
264 KOG1490|consensus 97.6 7.7E-05 1.7E-09 69.1 5.2 124 89-237 202-335 (620)
265 PRK12289 GTPase RsgA; Reviewed 97.6 0.00011 2.4E-09 66.6 6.2 85 119-236 83-168 (352)
266 cd01850 CDC_Septin CDC/Septin. 97.6 0.00017 3.6E-09 63.4 6.8 81 87-183 44-157 (276)
267 PRK00049 elongation factor Tu; 97.6 0.00022 4.8E-09 65.8 7.5 80 88-182 61-141 (396)
268 cd01899 Ygr210 Ygr210 subfamil 97.5 0.00044 9.6E-09 61.9 8.4 37 101-137 68-111 (318)
269 COG5256 TEF1 Translation elong 97.5 0.00015 3.2E-09 65.9 5.2 134 85-235 68-203 (428)
270 PRK00007 elongation factor G; 97.5 0.00039 8.4E-09 68.7 8.3 81 88-183 61-141 (693)
271 COG1159 Era GTPase [General fu 97.4 0.0004 8.7E-09 60.7 6.8 116 99-247 51-174 (298)
272 COG1160 Predicted GTPases [Gen 97.3 0.00044 9.6E-09 63.7 5.6 108 94-237 43-159 (444)
273 PLN03127 Elongation factor Tu; 97.3 0.00075 1.6E-08 63.3 7.0 83 86-183 108-191 (447)
274 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00072 1.6E-08 59.7 5.8 84 120-236 73-157 (287)
275 COG2895 CysN GTPases - Sulfate 97.1 0.0012 2.6E-08 59.1 6.6 116 88-234 72-194 (431)
276 KOG1707|consensus 97.1 0.0002 4.4E-09 67.4 1.6 110 101-237 55-169 (625)
277 PTZ00416 elongation factor 2; 97.1 0.00081 1.8E-08 67.7 5.9 67 101-182 91-157 (836)
278 PRK12288 GTPase RsgA; Reviewed 97.1 0.001 2.2E-08 60.3 5.9 83 124-236 119-201 (347)
279 cd01858 NGP_1 NGP-1. Autoanti 97.1 0.00078 1.7E-08 53.8 4.5 83 123-236 6-88 (157)
280 COG1217 TypA Predicted membran 97.1 0.0014 3E-08 60.6 6.4 85 86-185 52-136 (603)
281 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.0014 3E-08 51.4 5.7 78 122-231 8-85 (141)
282 PLN00116 translation elongatio 97.0 0.0012 2.6E-08 66.6 5.7 67 101-182 97-163 (843)
283 cd04104 p47_IIGP_like p47 (47- 96.9 0.0015 3.3E-08 54.2 5.3 64 102-182 52-120 (197)
284 KOG0458|consensus 96.9 0.0038 8.2E-08 59.1 8.3 128 87-234 240-373 (603)
285 PF01926 MMR_HSR1: 50S ribosom 96.9 0.005 1.1E-07 46.3 7.6 70 92-178 37-116 (116)
286 PRK09866 hypothetical protein; 96.9 0.0027 5.9E-08 61.3 7.2 108 102-236 230-346 (741)
287 COG2262 HflX GTPases [General 96.9 0.0017 3.7E-08 59.1 5.1 116 89-237 226-350 (411)
288 PF03029 ATP_bind_1: Conserved 96.8 0.00043 9.2E-09 59.5 1.2 122 103-237 92-231 (238)
289 PRK13796 GTPase YqeH; Provisio 96.8 0.0012 2.6E-08 60.3 3.8 83 124-237 67-153 (365)
290 COG0536 Obg Predicted GTPase [ 96.8 0.0042 9.1E-08 55.4 7.0 142 62-237 174-327 (369)
291 PRK07560 elongation factor EF- 96.8 0.0019 4.1E-08 64.3 5.3 69 100-183 85-153 (731)
292 PRK09602 translation-associate 96.7 0.0047 1E-07 57.0 6.8 36 102-137 72-114 (396)
293 COG0370 FeoB Fe2+ transport sy 96.6 0.0061 1.3E-07 58.9 6.8 114 89-237 37-158 (653)
294 cd01849 YlqF_related_GTPase Yl 96.3 0.0068 1.5E-07 48.2 5.0 51 168-237 28-79 (155)
295 KOG1532|consensus 96.3 0.0069 1.5E-07 52.6 5.0 124 102-237 116-258 (366)
296 cd01852 AIG1 AIG1 (avrRpt2-ind 96.3 0.012 2.5E-07 48.7 6.3 85 88-183 35-130 (196)
297 COG4108 PrfC Peptide chain rel 96.2 0.0077 1.7E-07 55.4 5.0 75 93-182 72-146 (528)
298 KOG1191|consensus 96.1 0.0083 1.8E-07 55.9 5.0 121 92-237 306-444 (531)
299 smart00010 small_GTPase Small 96.1 0.0061 1.3E-07 45.8 3.6 55 116-183 37-91 (124)
300 COG0480 FusA Translation elong 96.1 0.0098 2.1E-07 58.5 5.8 83 86-183 59-142 (697)
301 KOG1423|consensus 96.1 0.012 2.5E-07 52.0 5.4 121 99-236 117-264 (379)
302 cd01856 YlqF YlqF. Proteins o 96.1 0.004 8.8E-08 50.4 2.5 82 120-237 14-95 (171)
303 PF10662 PduV-EutP: Ethanolami 96.0 0.015 3.3E-07 45.9 5.1 94 106-236 40-139 (143)
304 KOG0468|consensus 95.8 0.015 3.3E-07 56.0 5.1 69 101-184 196-264 (971)
305 COG3276 SelB Selenocysteine-sp 95.4 0.042 9.1E-07 50.7 6.5 123 86-237 34-156 (447)
306 TIGR00101 ureG urease accessor 95.4 0.019 4E-07 48.0 3.9 99 102-243 92-194 (199)
307 TIGR03596 GTPase_YlqF ribosome 95.0 0.021 4.6E-07 50.0 3.1 81 121-237 17-97 (276)
308 cd01882 BMS1 Bms1. Bms1 is an 94.9 0.096 2.1E-06 44.5 6.9 66 100-183 81-147 (225)
309 PRK09563 rbgA GTPase YlqF; Rev 94.9 0.035 7.6E-07 49.0 4.3 81 121-237 20-100 (287)
310 TIGR00073 hypB hydrogenase acc 94.8 0.042 9.1E-07 45.9 4.5 53 169-236 148-200 (207)
311 COG0218 Predicted GTPase [Gene 94.7 0.11 2.3E-06 43.2 6.5 102 104-236 72-190 (200)
312 PRK01889 GTPase RsgA; Reviewed 94.4 0.087 1.9E-06 48.0 5.7 81 122-235 109-189 (356)
313 KOG0705|consensus 94.1 0.078 1.7E-06 50.2 4.8 135 67-237 47-183 (749)
314 PF00350 Dynamin_N: Dynamin fa 94.1 0.12 2.6E-06 41.1 5.4 64 102-179 101-168 (168)
315 KOG0464|consensus 93.8 0.042 9.1E-07 50.4 2.5 80 89-183 89-168 (753)
316 PRK09435 membrane ATPase/prote 93.6 0.091 2E-06 47.4 4.3 101 100-237 147-254 (332)
317 smart00053 DYNc Dynamin, GTPas 93.1 0.25 5.4E-06 42.5 6.0 68 102-183 125-206 (240)
318 KOG0461|consensus 92.8 0.15 3.2E-06 45.9 4.3 116 101-244 69-192 (522)
319 PF04548 AIG1: AIG1 family; I 92.8 0.3 6.6E-06 40.9 6.1 84 89-183 36-130 (212)
320 TIGR00750 lao LAO/AO transport 92.6 0.12 2.7E-06 45.8 3.5 104 100-237 125-232 (300)
321 COG0050 TufB GTPases - transla 92.4 0.14 3.1E-06 45.1 3.5 82 87-183 60-142 (394)
322 KOG3905|consensus 92.3 0.99 2.1E-05 40.5 8.6 59 169-237 222-284 (473)
323 TIGR00991 3a0901s02IAP34 GTP-b 91.7 0.72 1.6E-05 41.2 7.3 75 98-182 82-166 (313)
324 KOG3887|consensus 91.7 0.49 1.1E-05 40.7 5.8 71 102-184 75-150 (347)
325 COG5257 GCD11 Translation init 91.0 0.38 8.3E-06 43.0 4.7 114 103-245 87-202 (415)
326 cd01853 Toc34_like Toc34-like 90.2 1.2 2.7E-05 38.4 7.2 83 91-182 68-162 (249)
327 COG1162 Predicted GTPases [Gen 90.1 0.73 1.6E-05 40.8 5.7 83 124-236 78-160 (301)
328 KOG0465|consensus 89.9 0.66 1.4E-05 44.7 5.6 75 94-183 96-170 (721)
329 KOG0467|consensus 89.3 0.69 1.5E-05 45.6 5.3 85 88-187 54-142 (887)
330 cd04178 Nucleostemin_like Nucl 88.8 0.45 9.6E-06 38.7 3.2 15 169-183 30-44 (172)
331 PF05783 DLIC: Dynein light in 88.6 2.9 6.3E-05 39.6 8.9 53 87-139 52-114 (472)
332 KOG0085|consensus 87.8 0.25 5.4E-06 42.1 1.2 35 226-260 265-299 (359)
333 KOG0459|consensus 87.7 0.49 1.1E-05 43.5 3.0 136 86-236 141-279 (501)
334 COG5258 GTPBP1 GTPase [General 87.5 0.9 1.9E-05 41.6 4.5 66 103-183 202-269 (527)
335 TIGR03348 VI_IcmF type VI secr 85.8 0.84 1.8E-05 48.1 4.0 74 105-182 164-256 (1169)
336 KOG0460|consensus 84.8 2.1 4.6E-05 38.7 5.4 76 93-182 106-183 (449)
337 cd03110 Fer4_NifH_child This p 84.6 3.8 8.2E-05 32.9 6.6 66 100-182 91-156 (179)
338 KOG1143|consensus 83.4 4 8.7E-05 37.4 6.6 116 103-234 250-379 (591)
339 KOG1424|consensus 83.3 2.1 4.5E-05 40.6 4.9 55 116-184 166-220 (562)
340 PF14331 ImcF-related_N: ImcF- 82.7 1.8 4E-05 37.7 4.2 54 124-182 24-82 (266)
341 COG3596 Predicted GTPase [Gene 81.3 1.9 4.1E-05 37.8 3.6 72 99-183 84-162 (296)
342 COG3640 CooC CO dehydrogenase 79.9 3.8 8.3E-05 35.1 4.9 64 102-182 134-198 (255)
343 PRK10463 hydrogenase nickel in 79.0 1.1 2.4E-05 39.7 1.5 56 169-243 230-287 (290)
344 cd02038 FleN-like FleN is a me 78.9 6.4 0.00014 30.4 5.7 66 102-182 45-110 (139)
345 KOG0082|consensus 77.8 1.9 4.1E-05 39.2 2.7 34 226-259 261-294 (354)
346 KOG0447|consensus 74.5 9.2 0.0002 36.9 6.3 85 89-186 396-496 (980)
347 PF05049 IIGP: Interferon-indu 73.7 4.1 9E-05 37.4 3.8 97 61-181 49-153 (376)
348 KOG1707|consensus 71.3 18 0.00038 35.1 7.4 47 124-183 494-540 (625)
349 KOG2423|consensus 70.7 7 0.00015 36.1 4.5 59 110-183 197-258 (572)
350 COG3523 IcmF Type VI protein s 70.7 6.2 0.00013 41.5 4.6 74 105-183 177-270 (1188)
351 COG0378 HypB Ni2+-binding GTPa 68.1 3.9 8.5E-05 34.0 2.1 100 102-243 97-199 (202)
352 TIGR00993 3a0901s04IAP86 chlor 66.7 20 0.00043 35.7 6.9 83 92-183 156-250 (763)
353 cd01900 YchF YchF subfamily. 64.6 20 0.00044 31.4 6.1 35 103-137 63-104 (274)
354 TIGR02836 spore_IV_A stage IV 64.2 34 0.00075 32.2 7.6 47 125-180 144-191 (492)
355 COG4917 EutP Ethanolamine util 58.3 10 0.00022 29.4 2.6 94 106-236 41-139 (148)
356 KOG3929|consensus 58.1 9.5 0.00021 33.3 2.8 39 104-142 94-136 (363)
357 KOG0463|consensus 57.3 29 0.00063 32.0 5.8 15 104-118 221-235 (641)
358 cd00066 G-alpha G protein alph 56.7 9 0.00019 34.2 2.5 28 231-258 232-259 (317)
359 cd03111 CpaE_like This protein 55.9 40 0.00087 24.6 5.6 63 103-178 44-106 (106)
360 cd03112 CobW_like The function 55.1 13 0.00028 29.4 3.0 17 125-141 118-134 (158)
361 PTZ00258 GTP-binding protein; 54.6 34 0.00074 31.6 6.0 37 102-138 85-128 (390)
362 cd02036 MinD Bacterial cell di 54.2 42 0.00091 26.4 5.9 64 103-182 64-127 (179)
363 PHA02518 ParA-like protein; Pr 54.1 35 0.00075 27.8 5.6 35 101-137 76-110 (211)
364 KOG0469|consensus 53.4 15 0.00033 35.1 3.4 66 101-181 97-162 (842)
365 KOG2484|consensus 50.8 26 0.00055 32.5 4.4 50 121-183 142-191 (435)
366 KOG1954|consensus 50.4 33 0.00071 31.7 5.0 67 103-183 148-225 (532)
367 COG4963 CpaE Flp pilus assembl 50.0 38 0.00082 31.0 5.4 68 101-182 217-284 (366)
368 cd01452 VWA_26S_proteasome_sub 50.0 42 0.00091 27.7 5.3 49 127-177 4-56 (187)
369 COG0523 Putative GTPases (G3E 48.7 24 0.00051 31.8 3.9 44 125-183 116-159 (323)
370 cd03115 SRP The signal recogni 48.6 49 0.0011 26.2 5.5 66 101-183 82-153 (173)
371 KOG2486|consensus 48.4 24 0.00051 31.2 3.7 16 168-183 247-262 (320)
372 PF00735 Septin: Septin; Inte 47.9 68 0.0015 28.1 6.6 42 126-183 114-156 (281)
373 PRK09601 GTP-binding protein Y 47.9 61 0.0013 29.7 6.5 35 103-137 67-108 (364)
374 cd02117 NifH_like This family 47.3 78 0.0017 26.1 6.7 71 100-181 115-187 (212)
375 smart00275 G_alpha G protein a 46.4 17 0.00037 32.9 2.6 31 229-259 252-283 (342)
376 COG1163 DRG Predicted GTPase [ 46.4 39 0.00085 30.5 4.8 41 97-137 105-152 (365)
377 PF03308 ArgK: ArgK protein; 46.0 2.7 5.9E-05 36.5 -2.4 20 218-237 205-224 (266)
378 cd01458 vWA_ku Ku70/Ku80 N-ter 44.4 55 0.0012 27.2 5.3 50 127-178 2-57 (218)
379 PF02492 cobW: CobW/HypB/UreG, 42.4 34 0.00074 27.5 3.7 44 125-184 113-156 (178)
380 COG1703 ArgK Putative periplas 42.0 5.8 0.00012 35.3 -1.0 19 219-237 230-248 (323)
381 COG1161 Predicted GTPases [Gen 41.3 15 0.00032 33.0 1.4 55 113-184 22-76 (322)
382 PF00503 G-alpha: G-protein al 38.7 22 0.00047 32.6 2.2 32 228-259 304-336 (389)
383 TIGR01425 SRP54_euk signal rec 38.6 59 0.0013 30.5 4.9 65 101-182 182-252 (429)
384 TIGR03371 cellulose_yhjQ cellu 38.0 74 0.0016 26.6 5.2 66 103-182 116-181 (246)
385 TIGR00064 ftsY signal recognit 36.2 70 0.0015 27.9 4.9 66 100-182 153-230 (272)
386 PRK13849 putative crown gall t 34.9 90 0.002 26.4 5.2 68 100-180 82-151 (231)
387 cd02032 Bchl_like This family 34.8 1.3E+02 0.0028 25.7 6.3 70 100-181 114-184 (267)
388 cd02042 ParA ParA and ParB of 33.9 1.2E+02 0.0027 21.4 5.2 34 102-137 40-73 (104)
389 PF10718 Ycf34: Hypothetical c 33.1 42 0.0009 23.4 2.3 37 72-117 31-67 (77)
390 TIGR01007 eps_fam capsular exo 33.0 1.8E+02 0.0038 23.6 6.6 68 101-183 127-194 (204)
391 PRK13185 chlL protochlorophyll 31.5 1.5E+02 0.0032 25.3 6.2 70 100-181 116-186 (270)
392 KOG0466|consensus 30.6 27 0.00059 31.3 1.3 113 104-245 127-241 (466)
393 TIGR01969 minD_arch cell divis 29.4 1.7E+02 0.0037 24.4 6.1 66 101-182 108-173 (251)
394 KOG1534|consensus 28.9 52 0.0011 28.1 2.6 121 30-185 49-180 (273)
395 cd02037 MRP-like MRP (Multiple 28.7 2.7E+02 0.0059 21.7 6.9 67 100-182 66-134 (169)
396 cd03114 ArgK-like The function 28.1 1.3E+02 0.0029 23.4 4.8 34 100-136 90-123 (148)
397 PF01656 CbiA: CobQ/CobB/MinD/ 28.0 91 0.002 24.8 4.0 67 102-182 95-161 (195)
398 TIGR01968 minD_bact septum sit 27.0 1.6E+02 0.0035 24.7 5.5 65 101-181 111-175 (261)
399 PF14784 ECIST_Cterm: C-termin 26.8 1.4E+02 0.003 23.0 4.4 43 124-175 82-124 (126)
400 PRK14722 flhF flagellar biosyn 24.7 1E+02 0.0023 28.3 4.1 102 72-182 175-294 (374)
401 KOG4273|consensus 24.6 76 0.0016 27.7 2.9 46 124-183 77-123 (418)
402 PF10087 DUF2325: Uncharacteri 24.2 2.2E+02 0.0047 20.3 5.0 41 118-175 41-81 (97)
403 cd01453 vWA_transcription_fact 24.1 1.5E+02 0.0032 24.0 4.5 49 129-179 6-59 (183)
404 PHA03260 Capsid triplex subuni 23.1 1.3E+02 0.0028 26.5 4.0 41 26-74 255-295 (339)
405 KOG1086|consensus 23.0 80 0.0017 29.7 2.9 20 58-77 83-103 (594)
406 TIGR01281 DPOR_bchL light-inde 23.0 2.6E+02 0.0056 23.8 6.1 71 100-182 114-185 (268)
407 KOG0099|consensus 22.8 33 0.00071 30.2 0.4 31 229-259 271-303 (379)
408 TIGR00959 ffh signal recogniti 22.2 1.8E+02 0.0039 27.3 5.2 37 101-137 182-224 (428)
409 PRK13685 hypothetical protein; 21.8 2.4E+02 0.0051 25.2 5.8 55 124-180 86-141 (326)
410 PRK10416 signal recognition pa 21.3 1.7E+02 0.0036 26.2 4.6 66 100-182 195-272 (318)
411 CHL00175 minD septum-site dete 21.2 2.6E+02 0.0055 24.1 5.7 65 101-181 126-190 (281)
412 PRK14974 cell division protein 21.0 1.8E+02 0.0039 26.3 4.8 66 101-183 222-293 (336)
413 TIGR00578 ku70 ATP-dependent D 20.7 2.1E+02 0.0046 28.0 5.5 55 123-179 7-68 (584)
414 PF00448 SRP54: SRP54-type pro 20.5 2.2E+02 0.0047 23.4 4.9 37 101-137 83-125 (196)
No 1
>KOG0082|consensus
Probab=100.00 E-value=2.9e-63 Score=438.04 Aligned_cols=234 Identities=59% Similarity=0.967 Sum_probs=225.8
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
+|.++.++..++.+...+.+.+.+++|++++|..||+||+||+||.|+++|+|+|++.|||++++||++|+|.||.+|||
T Consensus 97 ~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL 176 (354)
T KOG0082|consen 97 DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISSPDYVPTEQDIL 176 (354)
T ss_pred ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcCCCCCCCHHHHH
Confidence 57788899999888777777679999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
++|+||+|+.+..|.+++.++.++|+|||+++|++|.|||+++++||||+++|+|||++.||...||+.+|+.+|+++++
T Consensus 177 ~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 177 RSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred hhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh------ccceeecccccccceeeeee
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL------FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~f 235 (262)
++||.+++|+||+||.|||.||+...+++.|||||.|.++.+ ..||+.+|.+ +++|+|.|||+|++||+.+|
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf 336 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVF 336 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHH
Confidence 999999999999999999999999999999999999997766 9999999987 69999999999999999999
Q ss_pred hh
Q psy6623 236 KK 237 (262)
Q Consensus 236 ~~ 237 (262)
++
T Consensus 337 ~a 338 (354)
T KOG0082|consen 337 DA 338 (354)
T ss_pred HH
Confidence 86
No 2
>KOG0085|consensus
Probab=100.00 E-value=3.6e-59 Score=384.68 Aligned_cols=232 Identities=49% Similarity=0.783 Sum_probs=221.8
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
.++|+.+|..++.+.. .....|+.+++++|++||.|||||+||.||+||+|.||++|+|.+++||+.+.|.||.+|++
T Consensus 103 ~e~nk~~A~~vrevd~--ekVttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~~~ylPTqQDvL 180 (359)
T KOG0085|consen 103 REENKAHASLVREVDV--EKVTTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIATPGYLPTQQDVL 180 (359)
T ss_pred cccchhhhhHhhhcch--HHhhhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcCcccCcchhhhh
Confidence 4678888888887755 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.|+||+|+.+..|.+.++.|++.|+|||+++|++|.|||+++.+++|.+++|.|||++.|.++.||+++++.+|..++.
T Consensus 181 RvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~ 260 (359)
T KOG0085|consen 181 RVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIIT 260 (359)
T ss_pred eeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch---hHHHHHHhhh------ccceeecccccccceeeee
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE---RNRMQESLKL------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~---~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~ 234 (262)
.||+.+.++|+|+||.|++++|+..+.+.+|||+|.|+..+. .+||++.|.+ +.+|.|+|||+|++||+.|
T Consensus 261 yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfV 340 (359)
T KOG0085|consen 261 YPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFV 340 (359)
T ss_pred cccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHH
Confidence 999999999999999999999999999999999999998765 8999999987 7899999999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|.+
T Consensus 341 Faa 343 (359)
T KOG0085|consen 341 FAA 343 (359)
T ss_pred HHH
Confidence 986
No 3
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=2.4e-54 Score=384.94 Aligned_cols=233 Identities=60% Similarity=0.954 Sum_probs=218.3
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
+|+++..+..+....... ....+++++++.|..||+||+||+||.++++++|+|+++|||++++||+.++|.||.+|++
T Consensus 64 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil 142 (317)
T cd00066 64 DPENEKDAKKILSFAPEL-EEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDIL 142 (317)
T ss_pred ChhhHHHHHHHHhccccc-cccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHhe
Confidence 566777777777665432 3357999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+++.||+|+.+..|.++++++.+||+|||+++|++|.+||+++++||||+|+|+||+.+.|++..+++.+++..|+++++
T Consensus 143 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 143 RARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred eeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCC-CCcch--hHHHHHHhhh------ccceeecccccccceeeee
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG-KRPGE--RNRMQESLKL------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g-~~~~~--~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~ 234 (262)
++++.++|++|++||+|++.+|++..++..|||+|.| +++.+ .+||.++|.+ |.+|+|+|||+|+++|+.+
T Consensus 223 ~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~v 302 (317)
T cd00066 223 SRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFV 302 (317)
T ss_pred CccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHH
Confidence 9999999999999999999999999999999999999 66555 9999999986 6899999999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|++
T Consensus 303 f~~ 305 (317)
T cd00066 303 FDA 305 (317)
T ss_pred HHH
Confidence 976
No 4
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=4.9e-54 Score=385.86 Aligned_cols=234 Identities=55% Similarity=0.906 Sum_probs=214.9
Q ss_pred CCCCHHHHHHHHhhhhcc-CCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 4 TSLDTTDAKMVFDVIQRM-EDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++.++..+..+++..... .....+++++++.|..||+||+||+||.++++|+|+|++.||+++++||++++|.||.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~~Di 164 (342)
T smart00275 85 DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDI 164 (342)
T ss_pred ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCHHHh
Confidence 344445566666553111 1224689999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.||+|+.+..+.++++++.+||+|||+++|++|.+||+++++||||+|+|+||+++.|++..+++.+++.+|++++
T Consensus 165 l~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~ 244 (342)
T smart00275 165 LRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC 244 (342)
T ss_pred hheeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh-------ccceeecccccccceeee
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL-------FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~ 233 (262)
+++++.++|++|++||+|++.+|+...++..|||+|.|+++.+ .+||.++|.+ |.+|+|+|||+|+++|+.
T Consensus 245 ~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 245 NSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred cCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 9999999999999999999999999999999999999987655 9999999975 569999999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|++
T Consensus 325 v~~~ 328 (342)
T smart00275 325 VFDA 328 (342)
T ss_pred HHHH
Confidence 9975
No 5
>KOG0099|consensus
Probab=100.00 E-value=7e-55 Score=364.40 Aligned_cols=233 Identities=43% Similarity=0.727 Sum_probs=216.0
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+|+..+++|++++...+ ..+++|+.+.+..||+|.||+.||+|++||+|.|+|+|||+++++|..++|.|+.+||
T Consensus 105 ~~~~~~~~~dYIls~~~~~~--~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~~~Y~Ps~qDi 182 (379)
T KOG0099|consen 105 ANPENQFRVDYILSVMNSPD--FDYPPEFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDI 182 (379)
T ss_pred CCcccchhHHHHHhcCCCCc--ccCCHHHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecccCCCCcHHHH
Confidence 58999999999999987544 4899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
|+||+-|.||.+.+|.++.++|+++|+|||+.+|++|..||.++++||||+++|+|++++.||++.||+.|++.+|+++.
T Consensus 183 LrcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiW 262 (379)
T KOG0099|consen 183 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIW 262 (379)
T ss_pred HHhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccC--CCcccCCCCCCCCcc--------h------hH-HHHHHhhh---------c
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKS--PLTICFPEYAGKRPG--------E------RN-RMQESLKL---------F 216 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~--~l~~~fp~~~g~~~~--------~------~~-~i~~~f~~---------~ 216 (262)
++.|+..+.+|||+||+|+..+|+... .+.+|||+|.+.... + .+ ||++.|.. +
T Consensus 263 nNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h 342 (379)
T KOG0099|consen 263 NNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRH 342 (379)
T ss_pred hhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCce
Confidence 999999999999999999999998754 689999999763221 1 22 45566665 6
Q ss_pred cceeecccccccceeeeeehh
Q psy6623 217 DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 217 ~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+|.|+|||+|++||+.||++
T Consensus 343 ~CYpHFTcAvDTenIrrVFnD 363 (379)
T KOG0099|consen 343 YCYPHFTCAVDTENIRRVFND 363 (379)
T ss_pred ecccceeEeechHHHHHHHHH
Confidence 799999999999999999987
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=1.2e-52 Score=384.36 Aligned_cols=234 Identities=52% Similarity=0.875 Sum_probs=208.8
Q ss_pred CCCCHHHHHHHHhhhhccCCCC--------CCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCC
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTE--------PFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY 75 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y 75 (262)
+|.++..+..++.......... .+++++++.|..||+||+||+||.++++++|+|+++|||++++||++++|
T Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~~~Y 208 (389)
T PF00503_consen 129 NEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQPDY 208 (389)
T ss_dssp STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHSTTB
T ss_pred CHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcCCCc
Confidence 5677788888888876655432 48999999999999999999999999999999999999999999999999
Q ss_pred CcCccccceeeecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH
Q psy6623 76 QPTEQDILRTRVKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES 154 (262)
Q Consensus 76 ~pt~~Dil~~~~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~ 154 (262)
.||.+||+++|.+|+|+.+..|.+ ++..+.++|+|||+.+|++|.+||+++++||||+++|+|||++.|+++.|++.++
T Consensus 209 ~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~es 288 (389)
T PF00503_consen 209 IPTDEDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHES 288 (389)
T ss_dssp ---HHHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHH
T ss_pred cCCCCCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCC-CcccCCCCCCC--Ccch--hHHHHHHhhh--------ccceee
Q psy6623 155 LKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP-LTICFPEYAGK--RPGE--RNRMQESLKL--------FDSICN 221 (262)
Q Consensus 155 ~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~-l~~~fp~~~g~--~~~~--~~~i~~~f~~--------~~~~~~ 221 (262)
+.+|+++++++++.++|++||+||.|++.+|+...+ +.+|||+|.|+ ++.+ .+||.++|.+ +.+|+|
T Consensus 289 l~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h 368 (389)
T PF00503_consen 289 LNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVH 368 (389)
T ss_dssp HHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEE
T ss_pred HHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEE
Confidence 999999999999999999999999999999999998 99999999997 5555 9999999986 567999
Q ss_pred cccccccceeeeeehh
Q psy6623 222 NKWFTDTSIILFLNKK 237 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~~ 237 (262)
+|||+|+++|+.+|+.
T Consensus 369 ~t~a~d~~~~~~v~~~ 384 (389)
T PF00503_consen 369 FTCATDTENIRKVFNA 384 (389)
T ss_dssp EESTTSHHHHHHHHHH
T ss_pred EeeecccHHHHHHHHH
Confidence 9999999999999975
No 7
>KOG0070|consensus
Probab=99.94 E-value=3.1e-27 Score=189.49 Aligned_cols=145 Identities=24% Similarity=0.374 Sum_probs=120.8
Q ss_pred CCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH
Q psy6623 75 YQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES 154 (262)
Q Consensus 75 y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~ 154 (262)
|+-...+++.. .||+|++++++.+++++|++||+|||++.|.+|.+||++.+++|||+|.+| ..|+.++
T Consensus 35 ykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~ea 103 (181)
T KOG0070|consen 35 YKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEA 103 (181)
T ss_pred EeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHH
Confidence 33334444434 899999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeee
Q psy6623 155 LKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 155 ~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.+.+..+++++.+.++|+++++||+|+++. +...++.. ..-...+..+.|+++.|||.+|+++.+.
T Consensus 104 k~eL~~~l~~~~l~~~~llv~aNKqD~~~a-ls~~ei~~-------------~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 104 KEELHRMLAEPELRNAPLLVFANKQDLPGA-LSAAEITN-------------KLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred HHHHHHHHcCcccCCceEEEEechhhcccc-CCHHHHHh-------------HhhhhccCCCCcEEeeccccccccHHHH
Confidence 999999999998999999999999999863 22222221 1222344458999999999999999999
Q ss_pred ehhhHHHhhccC
Q psy6623 235 NKKDLFEEKIKK 246 (262)
Q Consensus 235 f~~~lL~~~i~~ 246 (262)
+ +||.+.+.+
T Consensus 170 l--~wl~~~~~~ 179 (181)
T KOG0070|consen 170 L--DWLSNNLKK 179 (181)
T ss_pred H--HHHHHHHhc
Confidence 9 688777654
No 8
>KOG0071|consensus
Probab=99.94 E-value=2.8e-27 Score=180.92 Aligned_cols=133 Identities=21% Similarity=0.339 Sum_probs=116.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.+||+|++++++++++++|++||+|||.+.|..|.|||.+.+|+|||+|.++ .++++++...+.++++++
T Consensus 45 ~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~ii~~~ 114 (180)
T KOG0071|consen 45 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHRIINDR 114 (180)
T ss_pred cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHHHhCCH
Confidence 4899999999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.++|++|++||+|+++. ++..++.++ +-.++.++++|+++.+||.+|.+..+.| .||.+-+
T Consensus 115 em~~~~~LvlANkQDlp~A-~~pqei~d~-------------leLe~~r~~~W~vqp~~a~~gdgL~egl--swlsnn~ 177 (180)
T KOG0071|consen 115 EMRDAIILILANKQDLPDA-MKPQEIQDK-------------LELERIRDRNWYVQPSCALSGDGLKEGL--SWLSNNL 177 (180)
T ss_pred hhhcceEEEEecCcccccc-cCHHHHHHH-------------hccccccCCccEeeccccccchhHHHHH--HHHHhhc
Confidence 9999999999999999874 233333322 1123455699999999999999999999 6776543
No 9
>KOG0084|consensus
Probab=99.90 E-value=8.8e-25 Score=176.66 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|++...|.-+ +..|+|+.+....+ +.++++||||+||++||.+..+||++|||||+|+|+++
T Consensus 26 ~~Rf~~~~f~e~-------~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~----- 93 (205)
T KOG0084|consen 26 LLRFKDDTFTES-------YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK----- 93 (205)
T ss_pred hhhhccCCcchh-------hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc-----
Confidence 678888888764 48999987654443 45899999999999999999999999999999999999
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccce-ee
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSI-CN 221 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~-~~ 221 (262)
..++.....|+.++-.. ...++|.+|||||+|+.+++....+..+-|.+- ..+. +.
T Consensus 94 -----~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~-----------------~~~~~f~ 150 (205)
T KOG0084|consen 94 -----QESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE-----------------LGIPIFL 150 (205)
T ss_pred -----HHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHh-----------------cCCccee
Confidence 78888888888887654 346789999999999998776554443322222 3455 88
Q ss_pred cccccccceeeeeehh
Q psy6623 222 NKWFTDTSIILFLNKK 237 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~~ 237 (262)
+|||+++.||+..|..
T Consensus 151 ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 151 ETSAKDSTNVEDAFLT 166 (205)
T ss_pred ecccCCccCHHHHHHH
Confidence 9999999999999985
No 10
>KOG0092|consensus
Probab=99.89 E-value=2.4e-23 Score=167.77 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=110.7
Q ss_pred hhccccCCCCCCcCccccceeeecccceeEEE--Eeeec--cceeeeecCCccccchhhhccccCCCEEEEeeecccccc
Q psy6623 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVH--FSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140 (262)
Q Consensus 65 ~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~--~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~ 140 (262)
+-+.|+....|.+.. .||||..+.+ +.+++ ++|.|||||||++|+++-+.||||++++|+|+|+++
T Consensus 20 SlV~Rfvk~~F~e~~-------e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~--- 89 (200)
T KOG0092|consen 20 SLVLRFVKDQFHENI-------EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD--- 89 (200)
T ss_pred hhhhhhhhCcccccc-------ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc---
Confidence 346788888888765 7999965544 44444 889999999999999999999999999999999999
Q ss_pred ccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcccee
Q psy6623 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSIC 220 (262)
Q Consensus 141 ~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~ 220 (262)
..+|..+..|++++-.... +++-|.|+|||+||...|-...+.. ..|-.+ ....+
T Consensus 90 -------~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea-------------~~yAe~----~gll~ 144 (200)
T KOG0092|consen 90 -------EESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA-------------QAYAES----QGLLF 144 (200)
T ss_pred -------HHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH-------------HHHHHh----cCCEE
Confidence 7999999999999987544 7889999999999987442222111 223333 55789
Q ss_pred ecccccccceeeeeehh
Q psy6623 221 NNKWFTDTSIILFLNKK 237 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~ 237 (262)
++||||+|.||.++|.+
T Consensus 145 ~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEecccccCHHHHHHH
Confidence 99999999999999974
No 11
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=2.6e-22 Score=164.49 Aligned_cols=132 Identities=23% Similarity=0.307 Sum_probs=110.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|++...+.+++.++.+||+||+..+|..|.+||++++++|||+|.++ .+++.++.+.+..+++++
T Consensus 42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~ll~~~ 111 (175)
T PF00025_consen 42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKELLNDP 111 (175)
T ss_dssp EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHHHHTSG
T ss_pred cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhhhcchh
Confidence 5899999999999999999999999999999999999999999999999998 789999999999999988
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehhhHHHhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
...++|++|++||+|+.+. +...++...+ ....+. .+++.++.|||++|+||.++| +||.+.
T Consensus 112 ~~~~~piLIl~NK~D~~~~-~~~~~i~~~l-------------~l~~l~~~~~~~v~~~sa~~g~Gv~e~l--~WL~~~ 174 (175)
T PF00025_consen 112 ELKDIPILILANKQDLPDA-MSEEEIKEYL-------------GLEKLKNKRPWSVFSCSAKTGEGVDEGL--EWLIEQ 174 (175)
T ss_dssp GGTTSEEEEEEESTTSTTS-STHHHHHHHT-------------TGGGTTSSSCEEEEEEBTTTTBTHHHHH--HHHHHH
T ss_pred hcccceEEEEeccccccCc-chhhHHHhhh-------------hhhhcccCCceEEEeeeccCCcCHHHHH--HHHHhc
Confidence 8889999999999998652 1111111110 011122 378999999999999999999 688765
No 12
>KOG0073|consensus
Probab=99.87 E-value=1.7e-22 Score=158.65 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=114.4
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||.|++..+..+++.++++||+|||...|+.|.+||+.++|+|+|+|+|| ..|+++....++.++...
T Consensus 44 i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~lL~ee 113 (185)
T KOG0073|consen 44 ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTELLVEE 113 (185)
T ss_pred cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHHHHhhh
Confidence 4799999999999999999999999999999999999999999999999999 899999999999999988
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+..+|++|++||+|+... +....+.. .--+.+.++...|....|||.+|+++.+.| +||-..+.
T Consensus 114 rlaG~~~Lvlank~dl~~~-l~~~~i~~------------~~~L~~l~ks~~~~l~~cs~~tge~l~~gi--dWL~~~l~ 178 (185)
T KOG0073|consen 114 RLAGAPLLVLANKQDLPGA-LSLEEISK------------ALDLEELAKSHHWRLVKCSAVTGEDLLEGI--DWLCDDLM 178 (185)
T ss_pred hhcCCceEEEEecCcCccc-cCHHHHHH------------hhCHHHhccccCceEEEEeccccccHHHHH--HHHHHHHH
Confidence 8889999999999999742 22222211 111233345577889999999999999999 78776654
Q ss_pred C
Q psy6623 246 K 246 (262)
Q Consensus 246 ~ 246 (262)
+
T Consensus 179 ~ 179 (185)
T KOG0073|consen 179 S 179 (185)
T ss_pred H
Confidence 3
No 13
>KOG0094|consensus
Probab=99.87 E-value=2.8e-22 Score=161.75 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=110.6
Q ss_pred hccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccc
Q psy6623 66 DLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 141 (262)
Q Consensus 66 ~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~ 141 (262)
-+.|++-..|.- .|.+|||+.+...++ ..+.|++|||+|||+||++-+.|++++.++|.|+|+++
T Consensus 38 lItRf~yd~fd~-------~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~---- 106 (221)
T KOG0094|consen 38 LITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD---- 106 (221)
T ss_pred HHHHHHHhhhcc-------cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----
Confidence 356666666654 348899987765554 35889999999999999999999999999999999999
Q ss_pred cccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceee
Q psy6623 142 LHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICN 221 (262)
Q Consensus 142 ~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~ 221 (262)
.++|+...+|++.+.+.....++-|+|||||.||.+++-.... --..+.+.....+.
T Consensus 107 ------~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~e-----------------Eg~~kAkel~a~f~ 163 (221)
T KOG0094|consen 107 ------RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIE-----------------EGERKAKELNAEFI 163 (221)
T ss_pred ------cchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHH-----------------HHHHHHHHhCcEEE
Confidence 8999999999999998877777999999999999875422211 11123333556788
Q ss_pred cccccccceeeeeehh
Q psy6623 222 NKWFTDTSIILFLNKK 237 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~~ 237 (262)
+|||+.|.||+.+|..
T Consensus 164 etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 164 ETSAKAGENVKQLFRR 179 (221)
T ss_pred EecccCCCCHHHHHHH
Confidence 9999999999999985
No 14
>KOG0078|consensus
Probab=99.86 E-value=2.1e-22 Score=164.90 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=112.2
Q ss_pred ccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEe--e--eccceeeeecCCccccchhhhccccCCCEEEEe
Q psy6623 57 NDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFS--F--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC 132 (262)
Q Consensus 57 ~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~--~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv 132 (262)
.|+..=--.-+.|+..+.|.++. ..|+||...... . ..+++++|||+||+++|.+...||+++.+|++|
T Consensus 19 GDs~vGKt~~l~rf~d~~f~~~~-------~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv 91 (207)
T KOG0078|consen 19 GDSGVGKTCLLLRFSDDSFNTSF-------ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV 91 (207)
T ss_pred CCCCCchhHhhhhhhhccCcCCc-------cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEE
Confidence 45533222336788888888765 889998765443 3 358899999999999999999999999999999
Q ss_pred eeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHH
Q psy6623 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQES 212 (262)
Q Consensus 133 ~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~ 212 (262)
||+++ ..+++....|++.+-.+ ...++|++|||||+|+..+|....+. -++.
T Consensus 92 yDitn----------e~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~-----------------ge~l 143 (207)
T KOG0078|consen 92 YDITN----------EKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKER-----------------GEAL 143 (207)
T ss_pred EEccc----------hHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHH-----------------HHHH
Confidence 99999 67888888877666554 34589999999999998755443322 1222
Q ss_pred hhhccceeecccccccceeeeeehh
Q psy6623 213 LKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 213 f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+..+.+++|||++|.||.+.|-.
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAFLS 168 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHHHH
Confidence 2236789999999999999999975
No 15
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1.2e-21 Score=161.33 Aligned_cols=131 Identities=24% Similarity=0.399 Sum_probs=103.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|++...+..+++.+++||++||++++.+|.+||++++++|||+|+++ ..++.++..++..+++...
T Consensus 46 ~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~----------~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDE 115 (181)
T ss_pred cCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcCHh
Confidence 689998888888888999999999999999999999999999999999998 6788999999999987766
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..++|++|++||+|+.... ....+. +.+. ..+..+.+++.+|||++|+||.++|+ ||...+
T Consensus 116 ~~~~piilv~NK~Dl~~~~-~~~~~~--------------~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~--~l~~~~ 177 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNAM-NAAEIT--------------DKLGLHSLRQRHWYIQSTCATSGEGLYEGLD--WLSNNI 177 (181)
T ss_pred hCCCCEEEEEECCCCCCCC-CHHHHH--------------HHhCccccCCCceEEEeccCCCCCCHHHHHH--HHHHHH
Confidence 6789999999999986521 111111 1110 11122567788899999999999994 565544
No 16
>KOG0087|consensus
Probab=99.85 E-value=4.6e-22 Score=162.47 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=116.6
Q ss_pred cccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEE
Q psy6623 56 LNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIF 131 (262)
Q Consensus 56 l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIf 131 (262)
+.||+.==-+.+.|+..++|.+.. .+|+|+...+..+ +-++.+||||+||++||.+...||+++.|+++
T Consensus 20 iGDS~VGKsnLlsRftrnEF~~~S-------ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 20 IGDSAVGKSNLLSRFTRNEFSLES-------KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eCCCccchhHHHHHhcccccCccc-------ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 466765556778999999998855 8999987665443 34889999999999999999999999999999
Q ss_pred eeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH
Q psy6623 132 CVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE 211 (262)
Q Consensus 132 v~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~ 211 (262)
|+|++. ...++....|++++..+. -.+++++|+|||+||-.-|....+..+-|. +.
T Consensus 93 VYDITr----------~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~A-------------e~ 148 (222)
T KOG0087|consen 93 VYDITR----------RQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFA-------------EK 148 (222)
T ss_pred EEechh----------HHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHH-------------Hh
Confidence 999998 778888888888887664 368999999999999764333333222222 21
Q ss_pred Hhhhccceeecccccccceeeeeehh
Q psy6623 212 SLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 212 ~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+++++|||.++.||..+|..
T Consensus 149 ----~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087|consen 149 ----EGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred ----cCceEEEecccccccHHHHHHH
Confidence 3478999999999999999964
No 17
>KOG0072|consensus
Probab=99.84 E-value=1.4e-21 Score=150.41 Aligned_cols=136 Identities=22% Similarity=0.274 Sum_probs=115.1
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
...||+|++.+.+.+++.++++||++||-+.|..|..||.+++++|||||.+| ..++.-+...|..++..
T Consensus 45 ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~mL~E 114 (182)
T KOG0072|consen 45 TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYSMLQE 114 (182)
T ss_pred ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHHHhcc
Confidence 45899999999999999999999999999999999999999999999999999 78889999999999999
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+.+.++-++||+||+|.... +...+.. ...-..+.++|.|.++.+||..|+|++.+. +||...+
T Consensus 115 ~eLq~a~llv~anKqD~~~~-~t~~E~~-------------~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~--DWL~~~l 178 (182)
T KOG0072|consen 115 EELQHAKLLVFANKQDYSGA-LTRSEVL-------------KMLGLQKLKDRIWQIVKTSAVKGEGLDPAM--DWLQRPL 178 (182)
T ss_pred HhhcCceEEEEeccccchhh-hhHHHHH-------------HHhChHHHhhheeEEEeeccccccCCcHHH--HHHHHHH
Confidence 99999999999999998652 2111110 111123445578999999999999999999 7998876
Q ss_pred cC
Q psy6623 245 KK 246 (262)
Q Consensus 245 ~~ 246 (262)
++
T Consensus 179 ~~ 180 (182)
T KOG0072|consen 179 KS 180 (182)
T ss_pred hc
Confidence 54
No 18
>KOG0075|consensus
Probab=99.84 E-value=4.9e-21 Score=147.81 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=112.4
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|++..+++-+++++.+||+|||+++|++|..|++++++++||+|.++ ...+.-+...+.+++..+
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~LL~k~ 118 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHDLLDKP 118 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHHHhcch
Confidence 3899999999999999999999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH----HhhhccceeecccccccceeeeeehhhHHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE----SLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~----~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.+.+.|++|+|||.|+++. +.. ...|.. ...+|.+-++.+||++..||+.+. +||.
T Consensus 119 ~l~gip~LVLGnK~d~~~A-L~~-----------------~~li~rmgL~sitdREvcC~siScke~~Nid~~~--~Wli 178 (186)
T KOG0075|consen 119 SLTGIPLLVLGNKIDLPGA-LSK-----------------IALIERMGLSSITDREVCCFSISCKEKVNIDITL--DWLI 178 (186)
T ss_pred hhcCCcEEEecccccCccc-ccH-----------------HHHHHHhCccccccceEEEEEEEEcCCccHHHHH--HHHH
Confidence 9999999999999998762 222 222222 233489999999999999999888 7887
Q ss_pred hhcc
Q psy6623 242 EKIK 245 (262)
Q Consensus 242 ~~i~ 245 (262)
+..+
T Consensus 179 ~hsk 182 (186)
T KOG0075|consen 179 EHSK 182 (186)
T ss_pred HHhh
Confidence 7643
No 19
>KOG0098|consensus
Probab=99.83 E-value=1.2e-21 Score=156.93 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=106.8
Q ss_pred ccccCCCCCCcCccccceeeecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|++...|.|-. ..|+|+... .+.+ +.+++++|||+||+++|+....||+++.|+|+|+|++.
T Consensus 23 llrf~~krF~~~h-------d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~----- 90 (216)
T KOG0098|consen 23 LLRFTDKRFQPVH-------DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR----- 90 (216)
T ss_pred HHHHhccCccccc-------cceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc-----
Confidence 5678888888844 578886542 3333 57999999999999999999999999999999999998
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
.+++..--.|+..+.++. ..|..|+|+|||+||...+-.+.+....|+ ++ +.+.+.+
T Consensus 91 -----r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA-------------~e----hgLifmE 147 (216)
T KOG0098|consen 91 -----RESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFA-------------RE----HGLIFME 147 (216)
T ss_pred -----hhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHH-------------HH----cCceeeh
Confidence 677777777777777653 468999999999999876644433333333 32 4466779
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
|||++++||+++|..
T Consensus 148 TSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 148 TSAKTAENVEEAFIN 162 (216)
T ss_pred hhhhhhhhHHHHHHH
Confidence 999999999999986
No 20
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=1.1e-20 Score=154.55 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=102.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|+++++.+|.+||++++++|||+|+++ ..++.++.+++..+++...
T Consensus 42 ~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~ 111 (175)
T smart00177 42 IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDE 111 (175)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHh
Confidence 588888877777788999999999999999999999999999999999998 6789999999999987655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+.+.. ...++... .| ......+.++++.|||++|+||.++|+ ||.+.
T Consensus 112 ~~~~piilv~NK~Dl~~~~-~~~~i~~~----~~---------~~~~~~~~~~~~~~Sa~~g~gv~e~~~--~l~~~ 172 (175)
T smart00177 112 LRDAVILVFANKQDLPDAM-KAAEITEK----LG---------LHSIRDRNWYIQPTCATSGDGLYEGLT--WLSNN 172 (175)
T ss_pred hcCCcEEEEEeCcCcccCC-CHHHHHHH----hC---------ccccCCCcEEEEEeeCCCCCCHHHHHH--HHHHH
Confidence 6689999999999986421 11111110 00 011122567788999999999999995 66554
No 21
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=3.9e-21 Score=154.85 Aligned_cols=126 Identities=24% Similarity=0.359 Sum_probs=99.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|++...+..+++.+.+||++||++++.+|..||++++++|||+|+++ ..++.++.+++.+++....
T Consensus 29 ~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 98 (159)
T cd04150 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDE 98 (159)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHH
Confidence 578888777777788999999999999999999999999999999999998 6789999999999987666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++|++|++||+|+... ....++.. .+-.+.+..+.++++++||++|+||+++|+
T Consensus 99 ~~~~piilv~NK~Dl~~~-~~~~~i~~-------------~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 99 LRDAVLLVFANKQDLPNA-MSAAEVTD-------------KLGLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred hcCCCEEEEEECCCCCCC-CCHHHHHH-------------HhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 677999999999998542 11111110 000011223567788999999999999994
No 22
>KOG0076|consensus
Probab=99.83 E-value=1.5e-21 Score=154.68 Aligned_cols=163 Identities=21% Similarity=0.272 Sum_probs=131.8
Q ss_pred ccchh--HHHhhccccCCCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeee
Q psy6623 57 NDSAK--YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVA 134 (262)
Q Consensus 57 ~d~~~--yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~d 134 (262)
+|++. .||+..+..+...|.--.-+ ...||+|.+..++.+.+..+.+||.|||+.-|++|..||..+|++||++|
T Consensus 25 ldnAGKttfLe~~Kt~~~~~~~~l~~~---ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viD 101 (197)
T KOG0076|consen 25 LDNAGKTTFLEALKTDFSKAYGGLNPS---KITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVID 101 (197)
T ss_pred cccCCchhHHHHHHHHHHhhhcCCCHH---HeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeec
Confidence 35553 69998888777666533211 23799999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh
Q psy6623 135 MSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK 214 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~ 214 (262)
.++ .+|++++...|++++.+....++|+++++||+|+.++ +...++...|.. .+...
T Consensus 102 a~~----------~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~-~~~~El~~~~~~------------~e~~~ 158 (197)
T KOG0076|consen 102 ATD----------RERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA-MEAAELDGVFGL------------AELIP 158 (197)
T ss_pred CCC----------HHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh-hhHHHHHHHhhh------------hhhcC
Confidence 998 8999999999999999999999999999999999763 222233222211 12222
Q ss_pred hccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 215 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 215 ~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
++...+..+||.+|+||++.. .|++.++.++
T Consensus 159 ~rd~~~~pvSal~gegv~egi--~w~v~~~~kn 189 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGI--EWLVKKLEKN 189 (197)
T ss_pred CccCccccchhhhcccHHHHH--HHHHHHHhhc
Confidence 266778899999999999999 7999988775
No 23
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.82 E-value=2.6e-20 Score=156.10 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=90.0
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.+++ +++++||++||++++.+|..||++++++|+|+|+++ ..++++...|+..+.
T Consensus 30 ~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~~i~ 99 (202)
T cd04120 30 KSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMID 99 (202)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4565543 34455544 889999999999999999999999999999999999 788888877766543
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+ ....++|++|+|||+|+..++...... + .++..+ . +.+.+++|||++|.||.++|..
T Consensus 100 ~-~~~~~~piilVgNK~DL~~~~~v~~~~--------~-----~~~a~~-~--~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 100 K-YASEDAELLLVGNKLDCETDREISRQQ--------G-----EKFAQQ-I--TGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred H-hCCCCCcEEEEEECcccccccccCHHH--------H-----HHHHHh-c--CCCEEEEecCCCCCCHHHHHHH
Confidence 3 334679999999999986422111000 0 111111 0 2466889999999999999964
No 24
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=2.2e-20 Score=151.99 Aligned_cols=128 Identities=22% Similarity=0.401 Sum_probs=99.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+...++++++||++|+++++.+|..||++++++|||+|+++ ..++.++..++.++++...
T Consensus 38 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~ 107 (168)
T cd04149 38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDRE 107 (168)
T ss_pred cCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHh
Confidence 578888777777788999999999999999999999999999999999998 6789999999999987655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|++|++||+|+... ....++ .+++. .+...+.+.+++|||++|+||.++|+ ||.
T Consensus 108 ~~~~piilv~NK~Dl~~~-~~~~~i--------------~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~--~l~ 166 (168)
T cd04149 108 MRDALLLVFANKQDLPDA-MKPHEI--------------QEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT--WLS 166 (168)
T ss_pred hcCCcEEEEEECcCCccC-CCHHHH--------------HHHcCCCccCCCcEEEEEeeCCCCCChHHHHH--HHh
Confidence 678999999999998641 111111 11110 01122456788999999999999994 553
No 25
>KOG0080|consensus
Probab=99.82 E-value=1.2e-20 Score=147.87 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=105.4
Q ss_pred hhccccCCCCCCcCccccceeeecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccc
Q psy6623 65 DDLDRLGAKEYQPTEQDILRTRVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQ 140 (262)
Q Consensus 65 ~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~ 140 (262)
+-+-|+..+.|.|.. ..|+|+.+.. +.+ +.+++.||||+||++||.+.++||+++.|||.|+|++.-|.
T Consensus 26 SLllrFv~~~fd~~~-------~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt 98 (209)
T KOG0080|consen 26 SLLLRFVSNTFDDLH-------PTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT 98 (209)
T ss_pred HHHHHHHhcccCccC-------CceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh
Confidence 345677888887755 5569976543 344 35789999999999999999999999999999999998221
Q ss_pred ccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcccee
Q psy6623 141 VLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSIC 220 (262)
Q Consensus 141 ~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~ 220 (262)
...+.-|++.++..+. ..++-.+||+||+|...+|....+. | ++|.++ +++.+
T Consensus 99 -------f~kLd~W~~Eld~Yst---n~diikmlVgNKiDkes~R~V~reE--------G-----~kfAr~----h~~LF 151 (209)
T KOG0080|consen 99 -------FVKLDIWLKELDLYST---NPDIIKMLVGNKIDKESERVVDREE--------G-----LKFARK----HRCLF 151 (209)
T ss_pred -------HHhHHHHHHHHHhhcC---CccHhHhhhcccccchhcccccHHH--------H-----HHHHHh----hCcEE
Confidence 2333444444444443 3578889999999976554433211 1 555555 67889
Q ss_pred ecccccccceeeeeehhhHHHhhccC
Q psy6623 221 NNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
+++||++.+||+..|+. +.++.+..
T Consensus 152 iE~SAkt~~~V~~~Fee-lveKIi~t 176 (209)
T KOG0080|consen 152 IECSAKTRENVQCCFEE-LVEKIIET 176 (209)
T ss_pred EEcchhhhccHHHHHHH-HHHHHhcC
Confidence 99999999999999984 55555443
No 26
>KOG0095|consensus
Probab=99.82 E-value=8.9e-21 Score=146.83 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=104.7
Q ss_pred ccccCCCCCCcCccccceeeecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.|+.+.-|.|-. ..|+|+... ++++ ..++++||||+||++||++..+||+.++++|+|+|+|-
T Consensus 24 vrrftqglfppgq-------gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc----- 91 (213)
T KOG0095|consen 24 VRRFTQGLFPPGQ-------GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC----- 91 (213)
T ss_pred hhhhhccCCCCCC-------CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-----
Confidence 5678888888876 678887654 3444 35899999999999999999999999999999999997
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
.++...+.+|+..+++..++ ++--+||+||.|+-+++-....+.. +|-.. ...|+.+
T Consensus 92 --qpsfdclpewlreie~yan~----kvlkilvgnk~d~~drrevp~qige-------------efs~~----qdmyfle 148 (213)
T KOG0095|consen 92 --QPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADRREVPQQIGE-------------EFSEA----QDMYFLE 148 (213)
T ss_pred --CcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhhhhhhHHHHH-------------HHHHh----hhhhhhh
Confidence 34456777777777777665 4667999999999876533333322 12221 4478889
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
|||++.+||+.+|..
T Consensus 149 tsakea~nve~lf~~ 163 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLD 163 (213)
T ss_pred hcccchhhHHHHHHH
Confidence 999999999999975
No 27
>KOG0093|consensus
Probab=99.81 E-value=1.5e-20 Score=145.12 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=102.2
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+-|.+...|.| ++..|+|+.....++ +.+++++|||+||+++|.+...||+++.|+|+++|+++
T Consensus 38 l~ry~ddSFt~-------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN----- 105 (193)
T KOG0093|consen 38 LFRYADDSFTS-------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----- 105 (193)
T ss_pred hHHhhcccccc-------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC-----
Confidence 35677777877 458899987665554 45899999999999999999999999999999999998
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
.+++.....|...+ ..-...++|+||++||||+..||....+-.. .++.+ ..+-+++
T Consensus 106 -----eeSf~svqdw~tqI-ktysw~naqvilvgnKCDmd~eRvis~e~g~-------------~l~~~----LGfefFE 162 (193)
T KOG0093|consen 106 -----EESFNSVQDWITQI-KTYSWDNAQVILVGNKCDMDSERVISHERGR-------------QLADQ----LGFEFFE 162 (193)
T ss_pred -----HHHHHHHHHHHHHh-eeeeccCceEEEEecccCCccceeeeHHHHH-------------HHHHH----hChHHhh
Confidence 33443333333333 2223468999999999999998876654322 22222 3456889
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
||||...||+.+|..
T Consensus 163 tSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 163 TSAKENINVKQVFER 177 (193)
T ss_pred hcccccccHHHHHHH
Confidence 999999999999986
No 28
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=7e-20 Score=150.94 Aligned_cols=132 Identities=22% Similarity=0.376 Sum_probs=101.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.+...+...++.+++||++|+++++.+|.+||++++++|||+|+++ .+++.++..++..++....
T Consensus 46 ~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~ 115 (182)
T PTZ00133 46 IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDE 115 (182)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHh
Confidence 578888777777788999999999999999999999999999999999998 6788999999999887656
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..++|++|++||+|+.+. .....+.. .-| ...+..+.+++++|||++|+||+++|+ ||.+.+
T Consensus 116 ~~~~piilv~NK~Dl~~~-~~~~~i~~----~l~---------~~~~~~~~~~~~~~Sa~tg~gv~e~~~--~l~~~i 177 (182)
T PTZ00133 116 LRDAVLLVFANKQDLPNA-MSTTEVTE----KLG---------LHSVRQRNWYIQGCCATTAQGLYEGLD--WLSANI 177 (182)
T ss_pred hcCCCEEEEEeCCCCCCC-CCHHHHHH----HhC---------CCcccCCcEEEEeeeCCCCCCHHHHHH--HHHHHH
Confidence 678999999999998641 11111110 001 011222557778999999999999995 555544
No 29
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.80 E-value=7.5e-20 Score=148.66 Aligned_cols=134 Identities=20% Similarity=0.282 Sum_probs=102.3
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++++++||++|++.++..|..|+++++++|||+|+++ .+++.++..++..+++...
T Consensus 28 ~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~ 97 (169)
T cd04158 28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKE 97 (169)
T ss_pred CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChh
Confidence 578888777778888999999999999999999999999999999999998 6889999999999987655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..+.|++|++||+|+..+ .....+.++. ++.+ ....+.+.+.+|||++|.||.++| .||.+.+.
T Consensus 98 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~Sa~~g~gv~~~f--~~l~~~~~ 161 (169)
T cd04158 98 LRDALLLIFANKQDVAGA-LSVEEMTELL-SLHK-----------LCCGRSWYIQGCDARSGMGLYEGL--DWLSRQLV 161 (169)
T ss_pred hCCCCEEEEEeCcCcccC-CCHHHHHHHh-CCcc-----------ccCCCcEEEEeCcCCCCCCHHHHH--HHHHHHHh
Confidence 667999999999998642 1111111110 0000 000134677889999999999999 46665543
No 30
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.80 E-value=1.7e-19 Score=149.66 Aligned_cols=122 Identities=12% Similarity=0.014 Sum_probs=92.6
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+++||++||++++.+|..||++++++|+|+|+++ ..++.+...|+..+.
T Consensus 36 ~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~ 105 (189)
T cd04121 36 GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEID 105 (189)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 3455543 33444443 789999999999999999999999999999999999 889999988888886
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ..++|++|+|||.||...+... .+-.........+.+++|||++|.||+++|..
T Consensus 106 ~~--~~~~piilVGNK~DL~~~~~v~-----------------~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 106 EH--APGVPKILVGNRLHLAFKRQVA-----------------TEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred Hh--CCCCCEEEEEECccchhccCCC-----------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 54 3579999999999996532111 11111222225677899999999999999963
No 31
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.80 E-value=8.9e-20 Score=148.10 Aligned_cols=131 Identities=16% Similarity=0.235 Sum_probs=102.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+..+++++++||++|++.++.+|..||++++++|||+|+++ ..++.++..++..+.+..
T Consensus 27 ~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~~~~ 96 (167)
T cd04161 27 VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELLQHP 96 (167)
T ss_pred ccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHHcCc
Confidence 3678888777788889999999999999999999999999999999999998 678999999999998776
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeeccccccc------ceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDT------SIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~------~~I~~~f~ 236 (262)
...++|++||+||+|+...+ ...++.+.+ ..+.+. ..++++..|||++| +||.++|
T Consensus 97 ~~~~~piliv~NK~Dl~~~~-~~~~i~~~~-------------~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~- 161 (167)
T cd04161 97 RVSGKPILVLANKQDKKNAL-LGADVIEYL-------------SLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGL- 161 (167)
T ss_pred cccCCcEEEEEeCCCCcCCC-CHHHHHHhc-------------CcccccCCCCceEEEEEeEceeCCCCccccCHHHHH-
Confidence 66789999999999997532 011111100 001111 13578888999998 8999999
Q ss_pred hhHHHh
Q psy6623 237 KDLFEE 242 (262)
Q Consensus 237 ~~lL~~ 242 (262)
.||.+
T Consensus 162 -~wl~~ 166 (167)
T cd04161 162 -RWLLA 166 (167)
T ss_pred -HHHhc
Confidence 68854
No 32
>PTZ00099 rab6; Provisional
Probab=99.80 E-value=2.4e-19 Score=147.11 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=95.1
Q ss_pred eecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+.||+|+.... +.+ +.+++.||||+||++++.+|..||++++++|+|+|+++ ..++.+...|+..+
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i 78 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDI 78 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 35677765533 233 35889999999999999999999999999999999998 67888888888888
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.... ..++|++||+||+||...+. +. .+-.........+.+++|||++|.||.++|. +|.
T Consensus 79 ~~~~-~~~~piilVgNK~DL~~~~~----v~-------------~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~--~l~ 138 (176)
T PTZ00099 79 LNER-GKDVIIALVGNKTDLGDLRK----VT-------------YEEGMQKAQEYNTMFHETSAKAGHNIKVLFK--KIA 138 (176)
T ss_pred HHhc-CCCCeEEEEEECcccccccC----CC-------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH--HHH
Confidence 7643 25789999999999964221 10 0111111222446678999999999999995 454
Q ss_pred hhc
Q psy6623 242 EKI 244 (262)
Q Consensus 242 ~~i 244 (262)
..+
T Consensus 139 ~~l 141 (176)
T PTZ00099 139 AKL 141 (176)
T ss_pred HHH
Confidence 444
No 33
>KOG0091|consensus
Probab=99.80 E-value=6.8e-21 Score=149.53 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=109.3
Q ss_pred cccchhHHHhhccccCCCCCCcCccccceeeecccceeEE--EEee---eccceeeeecCCccccchhhhccccCCCEEE
Q psy6623 56 LNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFSF---KNLNFKLFDVGGQRSERKKWIHCFEDVTAII 130 (262)
Q Consensus 56 l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~~---~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iI 130 (262)
+.||..-=-.-+.++.+..|.. . +-||+|+... -+++ ..+++++|||+||+++|++..+||+++-|++
T Consensus 14 igdstvgkssll~~ft~gkfae-l------sdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 14 IGDSTVGKSSLLRYFTEGKFAE-L------SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EcCCcccHHHHHHHHhcCcccc-c------CCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4566432222244455555532 2 2599997642 2233 2489999999999999999999999999999
Q ss_pred EeeeccccccccccCcccccHHHHHHHHHHHHhCCC-CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH
Q psy6623 131 FCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM 209 (262)
Q Consensus 131 fv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i 209 (262)
.|+|+++ ..+++....|+++..-+-. ..++.++|||.|+||-..|-...+..+.|+.+
T Consensus 87 lvyditn----------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~----------- 145 (213)
T KOG0091|consen 87 LVYDITN----------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS----------- 145 (213)
T ss_pred EEEeccc----------hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----------
Confidence 9999999 7888888888888765433 45678899999999987665554444444444
Q ss_pred HHHhhhccceeecccccccceeeeeehh
Q psy6623 210 QESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 210 ~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.+.+|||++|.||++.|..
T Consensus 146 ------hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 146 ------HGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred ------cCceEEEecccCCCcHHHHHHH
Confidence 4477889999999999999964
No 34
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.79 E-value=2.1e-19 Score=150.29 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+......+ +.+++++||++|++.++.+|..||++++++|+|+|+++ ..++.....|...+.
T Consensus 25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~----------~~S~~~i~~w~~~i~ 94 (200)
T smart00176 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA----------RVTYKNVPNWHRDLV 94 (200)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 5777766544433 45899999999999999999999999999999999998 677877777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... .++|++||+||+|+..... .. + ...+. ....+.+++|||++|+||.++|. +|..
T Consensus 95 ~~~--~~~piilvgNK~Dl~~~~v-~~---~-----------~~~~~----~~~~~~~~e~SAk~~~~v~~~F~--~l~~ 151 (200)
T smart00176 95 RVC--ENIPIVLCGNKVDVKDRKV-KA---K-----------SITFH----RKKNLQYYDISAKSNYNFEKPFL--WLAR 151 (200)
T ss_pred HhC--CCCCEEEEEECcccccccC-CH---H-----------HHHHH----HHcCCEEEEEeCCCCCCHHHHHH--HHHH
Confidence 532 5799999999999853211 00 0 01221 22567889999999999999996 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 152 ~i 153 (200)
T smart00176 152 KL 153 (200)
T ss_pred HH
Confidence 33
No 35
>KOG0086|consensus
Probab=99.79 E-value=4.9e-20 Score=143.23 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=98.7
Q ss_pred ccccCCCCCCcCccccceeeecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
+.++....|.-.. ..|+|+.+.. +.+ +.++++||||+||++||+...+||+++.|.++|+|+++
T Consensus 26 Lh~Fie~kfkDds-------sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts----- 93 (214)
T KOG0086|consen 26 LHQFIENKFKDDS-------SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----- 93 (214)
T ss_pred HHHHHHhhhcccc-------cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc-----
Confidence 3445555554322 6788876543 233 45899999999999999999999999999999999998
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhh-cccee
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKL-FDSIC 220 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~-~~~~~ 220 (262)
.+++++.-.|+..+.. -...++.++|++||.||..++-.. |.+ ..|.+ +.+.+
T Consensus 94 -----rdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~Vt-------------------flEAs~FaqEnel~f 148 (214)
T KOG0086|consen 94 -----RDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVT-------------------FLEASRFAQENELMF 148 (214)
T ss_pred -----hhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhh-------------------HHHHHhhhcccceee
Confidence 5666666666655542 234578899999999997754222 221 12322 67889
Q ss_pred ecccccccceeeeeehh
Q psy6623 221 NNKWFTDTSIILFLNKK 237 (262)
Q Consensus 221 ~~tsA~d~~~I~~~f~~ 237 (262)
|+|||++|+||++.|-.
T Consensus 149 lETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLK 165 (214)
T ss_pred eeecccccccHHHHHHH
Confidence 99999999999999975
No 36
>KOG0079|consensus
Probab=99.79 E-value=6.5e-20 Score=141.82 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=101.3
Q ss_pred eeecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
+|+.|+|+.. .++.+ ..++++|||++||++||.+...||++.+++|.|+|+++ .+++....+|+++
T Consensus 36 sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn----------~ESF~Nv~rWLee 105 (198)
T KOG0079|consen 36 SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFNNVKRWLEE 105 (198)
T ss_pred ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc----------hhhhHhHHHHHHH
Confidence 4578888654 34444 34899999999999999999999999999999999999 8999999999999
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+-++- ..+|-+|||||.|+++.|.....-. ..|... ..+-+++|||++.+|++..|.-
T Consensus 106 i~~nc--dsv~~vLVGNK~d~~~RrvV~t~dA-------------r~~A~~----mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 106 IRNNC--DSVPKVLVGNKNDDPERRVVDTEDA-------------RAFALQ----MGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred HHhcC--ccccceecccCCCCccceeeehHHH-------------HHHHHh----cCchheehhhhhcccchHHHHH
Confidence 98763 4789999999999998765544322 233333 4577899999999999999974
No 37
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.78 E-value=6e-19 Score=146.42 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=82.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+.+++|||+||++++.+|..||++++++|+|+|+++ ..+++.... |...+... ..++|++|+|||
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 116 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH--CPNVPILLVGTK 116 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEEeC
Confidence 44789999999999999999999999999999999998 678887764 44445432 357999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
+||.+.+-....+... +......+...+...... +.+++|||++|+||+++|..
T Consensus 117 ~DL~~~~~~~~~~~~~-----~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~ 171 (191)
T cd01875 117 KDLRNDADTLKKLKEQ-----GQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAE 171 (191)
T ss_pred hhhhcChhhHHHHhhc-----cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHH
Confidence 9996532111111100 000000111111111123 57889999999999999963
No 38
>KOG0074|consensus
Probab=99.77 E-value=4.2e-19 Score=136.36 Aligned_cols=131 Identities=17% Similarity=0.300 Sum_probs=107.6
Q ss_pred ecccceeEEEEeeec-cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 87 VKTTGIVEVHFSFKN-LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.||-|++..++.+.+ +.+++||+|||+..|..|.+||++++++|||+|.+| ..+++|.-+.+-+++...
T Consensus 46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~ELleee 115 (185)
T KOG0074|consen 46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELVELLEEE 115 (185)
T ss_pred cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHHHHhhhh
Confidence 689999999999976 999999999999999999999999999999999888 789999989999998888
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
.+..+|+++++||+|+.... +..++. .+.-....++|.|++..+||..++++.... +|...-
T Consensus 116 Kl~~vpvlIfankQdlltaa-~~eeia-------------~klnl~~lrdRswhIq~csals~eg~~dg~--~wv~sn 177 (185)
T KOG0074|consen 116 KLAEVPVLIFANKQDLLTAA-KVEEIA-------------LKLNLAGLRDRSWHIQECSALSLEGSTDGS--DWVQSN 177 (185)
T ss_pred hhhccceeehhhhhHHHhhc-chHHHH-------------HhcchhhhhhceEEeeeCccccccCccCcc--hhhhcC
Confidence 88899999999999997532 111111 111222334488999999999999998887 565544
No 39
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=6.9e-19 Score=142.50 Aligned_cols=125 Identities=19% Similarity=0.303 Sum_probs=94.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++++.+||++|++.++.+|..||++++++|+|+|+++ ..++..+..++..+....
T Consensus 29 ~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~----------~~s~~~~~~~l~~~~~~~- 97 (164)
T cd04162 29 VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD----------SERLPLARQELHQLLQHP- 97 (164)
T ss_pred cccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCC-
Confidence 677787766677778999999999999999999999999999999999998 567888888888887543
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-hhccceeecccccc------cceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-KLFDSICNNKWFTD------TSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-~~~~~~~~~tsA~d------~~~I~~~f~~ 237 (262)
.++|++|++||+|+..++.. ..+... .+ ...+ .++.+.+++|||++ ++||+++|+.
T Consensus 98 -~~~piilv~NK~Dl~~~~~~-~~i~~~----~~---------~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 98 -PDLPLVVLANKQDLPAARSV-QEIHKE----LE---------LEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred -CCCcEEEEEeCcCCcCCCCH-HHHHHH----hC---------ChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 57999999999998654311 010000 00 0111 12457777888887 9999999964
No 40
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.77 E-value=2.3e-18 Score=141.32 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=84.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++++|||+|+++++.++..||++++++|+|+|+++ ..+++.. ..|+..+.+.. .++|++|||||
T Consensus 47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~----------~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK 114 (176)
T cd04133 47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS----------RASYENVLKKWVPELRHYA--PNVPIVLVGTK 114 (176)
T ss_pred EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC----------HHHHHHHHHHHHHHHHHhC--CCCCEEEEEeC
Confidence 34889999999999999999999999999999999998 7888887 46777765432 47999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+||.+++.... .. .+......+...+......+ .+++|||++|.||+++|+.
T Consensus 115 ~Dl~~~~~~~~--~~-----~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 115 LDLRDDKQYLA--DH-----PGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred hhhccChhhhh--hc-----cCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHH
Confidence 99965431100 00 00000001111111122344 4789999999999999974
No 41
>KOG0081|consensus
Probab=99.76 E-value=9.3e-20 Score=142.57 Aligned_cols=136 Identities=12% Similarity=0.164 Sum_probs=107.2
Q ss_pred cccCCCCCCcCccccceeeecccceeEEEEee--e-----------ccceeeeecCCccccchhhhccccCCCEEEEeee
Q psy6623 68 DRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF--K-----------NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVA 134 (262)
Q Consensus 68 ~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~--~-----------~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~d 134 (262)
-|+....|.+ ..+.|+||......+ + .+.+++|||+||++||++...+|+++-|.|+++|
T Consensus 27 y~YTD~~F~~-------qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFD 99 (219)
T KOG0081|consen 27 YQYTDGKFNT-------QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD 99 (219)
T ss_pred EEecCCcccc-------eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEe
Confidence 4455555554 448899987654443 1 2779999999999999999999999999999999
Q ss_pred ccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh
Q psy6623 135 MSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK 214 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~ 214 (262)
+++ ..++-+...|+..+..+....+.-|+|++||+||.+.+...... ..-+..
T Consensus 100 lT~----------eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~q--------------a~~La~--- 152 (219)
T KOG0081|consen 100 LTS----------EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQ--------------AAALAD--- 152 (219)
T ss_pred ccc----------hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHH--------------HHHHHH---
Confidence 998 78999999999999888777889999999999999876544321 111111
Q ss_pred hccceeecccccccceeeeeehh
Q psy6623 215 LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 215 ~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...+.+++|||-+|.||+...+.
T Consensus 153 kyglPYfETSA~tg~Nv~kave~ 175 (219)
T KOG0081|consen 153 KYGLPYFETSACTGTNVEKAVEL 175 (219)
T ss_pred HhCCCeeeeccccCcCHHHHHHH
Confidence 14588999999999999988864
No 42
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=2.4e-18 Score=140.89 Aligned_cols=120 Identities=11% Similarity=0.105 Sum_probs=82.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+++++||++|++.++.+|..||++++++|+|+|+++ ..++.+... |+..+... ..++|++|++||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~ 115 (175)
T cd01874 48 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CPKTPFLLVGTQI 115 (175)
T ss_pred EEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECH
Confidence 3788999999999999999999999999999999998 677777764 55555432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......+.. ... .....+...+.... +.+.+++|||++|+||+++|+.
T Consensus 116 Dl~~~~~~~~~l~~----~~~-~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~ 169 (175)
T cd01874 116 DLRDDPSTIEKLAK----NKQ-KPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169 (175)
T ss_pred hhhhChhhHHHhhh----ccC-CCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHH
Confidence 98653211111111 000 00001111111112 2367899999999999999975
No 43
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.75 E-value=3.5e-18 Score=139.49 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=83.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++.+|..||++++++|+|+|+++ ..++.....|+..+.+.....++|++|++||+|
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 3678999999999999999999999999999999998 777887776655554433335799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++. +. .....+...+..+.+++|||++|.||+++|+
T Consensus 119 l~~~~~----v~-------------~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 119 LESQRQ----VT-------------TEEGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred hhhcCc----cC-------------HHHHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 865321 11 0111111123567788999999999999996
No 44
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.75 E-value=4.4e-18 Score=137.52 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=90.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.... .+.+ ..+++.+||++|+++++..|..++++++++|+|+|+++ ..+++....|+..+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~ 101 (166)
T cd04122 32 PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDAR 101 (166)
T ss_pred CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 456664432 2333 34788999999999999999999999999999999998 677887777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.. ..+.|++|++||+|+..++... .+..........+.++++||++|+||.++|..
T Consensus 102 ~~~-~~~~~iiiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 102 NLT-NPNTVIFLIGNKADLEAQRDVT-----------------YEEAKQFADENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred HhC-CCCCeEEEEEECcccccccCcC-----------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 432 2468999999999996532110 11122222234577889999999999999963
No 45
>KOG0083|consensus
Probab=99.75 E-value=2.6e-19 Score=136.34 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=97.3
Q ss_pred eecccceeEEEE--ee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHF--SF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~~--~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+.|+||..... ++ ..+++++|||+||++||+....||++++++++++|+++ ..+++....|+.++
T Consensus 27 fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian----------kasfdn~~~wlsei 96 (192)
T KOG0083|consen 27 FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN----------KASFDNCQAWLSEI 96 (192)
T ss_pred eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc----------chhHHHHHHHHHHH
Confidence 467889876543 33 35889999999999999999999999999999999998 78888888888887
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
-... -..+.+.|++||+|+..++..+.+-.+ +......+.+.+|||++|-||+..|-.
T Consensus 97 ~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~-----------------kla~~y~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 97 HEYA-KEAVALMLLGNKCDLAHERAVKRDDGE-----------------KLAEAYGIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred HHHH-HhhHhHhhhccccccchhhccccchHH-----------------HHHHHHCCCceeccccccccHhHHHHH
Confidence 6532 245788999999999776655443221 111225578899999999999999964
No 46
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.75 E-value=1.8e-18 Score=141.21 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=99.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.+...+.++++++.+||++|++.++..|..+|++++++|||+|+++ .+++.++..++..++++..
T Consensus 44 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~ 113 (174)
T cd04153 44 SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHED 113 (174)
T ss_pred CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 478888777888888999999999999999999999999999999999998 6778888888888887666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|++|++||+|+... .....+.. .+. ....++.+.++++||++|+||+++| .||.
T Consensus 114 ~~~~p~viv~NK~Dl~~~-~~~~~i~~--------------~l~~~~~~~~~~~~~~~SA~~g~gi~e~~--~~l~ 172 (174)
T cd04153 114 LRKAVLLVLANKQDLKGA-MTPAEISE--------------SLGLTSIRDHTWHIQGCCALTGEGLPEGL--DWIA 172 (174)
T ss_pred hcCCCEEEEEECCCCCCC-CCHHHHHH--------------HhCcccccCCceEEEecccCCCCCHHHHH--HHHh
Confidence 678999999999998641 11111111 000 0111245678899999999999999 4554
No 47
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=2.5e-18 Score=137.74 Aligned_cols=127 Identities=24% Similarity=0.249 Sum_probs=95.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+..+++++++||++|++.++.+|..|+++++++|||+|+++ ..++..+..++..+.+.+
T Consensus 29 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~ 98 (162)
T cd04157 29 IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLLNHP 98 (162)
T ss_pred ecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHHcCc
Confidence 3678887777777788999999999999999999999999999999999998 677777778888877654
Q ss_pred CC--CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 166 WF--TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~--~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+ .++|++|++||+|+..+.. ...+...+ + ......+.+.+++|||++|+||+++|+
T Consensus 99 ~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l----~---------~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 99 DIKHRRVPILFFANKMDLPDALT-AVKITQLL----G---------LENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred ccccCCCCEEEEEeCccccCCCC-HHHHHHHh----C---------CccccCceEEEEEeeCCCCCchHHHHH
Confidence 43 4799999999999864210 00000000 0 000111345678999999999999995
No 48
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.74 E-value=5.1e-18 Score=139.96 Aligned_cols=122 Identities=13% Similarity=0.115 Sum_probs=82.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++++|||+||+.++.++..||++++++|+|+|+++ ..++... ..|+..+... ..++|++|||||
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK 118 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCK 118 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEeEC
Confidence 35789999999999999999999999999999999998 7788876 4565555443 247999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccce-eeeeehhh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSI-ILFLNKKD 238 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~-I~~~f~~~ 238 (262)
+||....-....+.. .-...-. .+-..+...... +.+++|||++|+| |+++|...
T Consensus 119 ~DL~~~~~~~~~~~~---~~~~~v~--~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 119 SDLRTDLTTLVELSN---HRQTPVS--YDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred hhhhcChhhHHHHHh---cCCCCCC--HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHH
Confidence 998542100000000 0000000 111112122244 3688999999998 99999753
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.74 E-value=8.7e-18 Score=138.52 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=87.9
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.+...|+..+.
T Consensus 30 ~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~----------~~s~~~i~~~~~~~~ 99 (182)
T cd04128 30 IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR----------KSTLNSIKEWYRQAR 99 (182)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 56666544 3344443 789999999999999999999999999999999998 678888878888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... ...| +|++||+|+..+. ....... ..+..........+.+++|||++|.||+++|..
T Consensus 100 ~~~~-~~~p-ilVgnK~Dl~~~~-~~~~~~~-----------~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 100 GFNK-TAIP-ILVGTKYDLFADL-PPEEQEE-----------ITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred HhCC-CCCE-EEEEEchhccccc-cchhhhh-----------hHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 5422 3467 5789999986321 0000000 011111111123466789999999999999963
No 50
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=8.5e-18 Score=140.45 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=89.6
Q ss_pred ecccceeE--EEEeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|... ..+.++ .+.+.+||++|+++++.+|..||++++++|+|+|+++ ..++.++..|+..+
T Consensus 30 ~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i 99 (201)
T cd04107 30 KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADL 99 (201)
T ss_pred CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 46666432 233333 4778999999999999999999999999999999998 77888887777666
Q ss_pred HhC---CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 162 CNN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~---~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+. +...++|++|++||+|+..++... ..-+.+...... +.+++|||++|.||+++|..
T Consensus 100 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~ 162 (201)
T cd04107 100 DSKVTLPNGEPIPCLLLANKCDLKKRLAKD-----------------GEQMDQFCKENGFIGWFETSAKEGINIEEAMRF 162 (201)
T ss_pred HHhhcccCCCCCcEEEEEECCCcccccccC-----------------HHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHH
Confidence 432 223578999999999996421100 111222222233 56889999999999999964
No 51
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.74 E-value=1.4e-17 Score=141.26 Aligned_cols=139 Identities=14% Similarity=0.077 Sum_probs=95.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.......++.+.+.+||++|++.++.+|..||++++++|+|+|+++ ..++.+...+|..+... .
T Consensus 29 ~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~-~ 97 (220)
T cd04126 29 VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDT-A 97 (220)
T ss_pred CCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-c
Confidence 467776655556677889999999999999999999999999999999998 77888888888887754 2
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCc---ccCCCC-CCCCc-ch-hHHHHHHhhh-----------ccceeecccccccc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLT---ICFPEY-AGKRP-GE-RNRMQESLKL-----------FDSICNNKWFTDTS 229 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~---~~fp~~-~g~~~-~~-~~~i~~~f~~-----------~~~~~~~tsA~d~~ 229 (262)
..++|++||+||+||.........-. ..-+.. .-.-. .+ ..+..+ ... ..+.+++|||++|.
T Consensus 98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~-~~~~~~~~~~~~~~~~~~~~E~SA~tg~ 176 (220)
T cd04126 98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR-INKYKMLDEDLSPAAEKMCFETSAKTGY 176 (220)
T ss_pred CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH-hCccccccccccccccceEEEeeCCCCC
Confidence 35789999999999965211110000 000000 00000 01 222221 110 12568899999999
Q ss_pred eeeeeehh
Q psy6623 230 IILFLNKK 237 (262)
Q Consensus 230 ~I~~~f~~ 237 (262)
||+++|..
T Consensus 177 ~V~elf~~ 184 (220)
T cd04126 177 NVDELFEY 184 (220)
T ss_pred CHHHHHHH
Confidence 99999975
No 52
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.74 E-value=7e-18 Score=137.42 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=97.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+.++++.+.+||++|++.++..|..||++++++|+|+|+++ ..++.+...++..++....
T Consensus 43 ~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 112 (173)
T cd04154 43 SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEER 112 (173)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence 578888777778888999999999999999999999999999999999998 6788888888888887555
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-Hhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++|++|++||+|+..+. ....+ .+++.. ....+.+.++++||++|+||.++|+
T Consensus 113 ~~~~p~iiv~nK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 113 LAGATLLILANKQDLPGAL-SEEEI--------------REALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred hcCCCEEEEEECcccccCC-CHHHH--------------HHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 5689999999999986521 00001 011100 0112457789999999999999995
No 53
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.73 E-value=5.3e-18 Score=143.86 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=92.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+......+ +.+++++||++|++.++.+|..||++++++|+|+|+++ ..++.....|+..+.
T Consensus 43 ~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~ 112 (219)
T PLN03071 43 EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLC 112 (219)
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHH
Confidence 5677765544333 35899999999999999999999999999999999998 677777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ..++|++|||||+|+....... . ...+. ..+.+.+++|||++|.||.++|. +|..
T Consensus 113 ~~--~~~~piilvgNK~Dl~~~~v~~----~-----------~~~~~----~~~~~~~~e~SAk~~~~i~~~f~--~l~~ 169 (219)
T PLN03071 113 RV--CENIPIVLCGNKVDVKNRQVKA----K-----------QVTFH----RKKNLQYYEISAKSNYNFEKPFL--YLAR 169 (219)
T ss_pred Hh--CCCCcEEEEEEchhhhhccCCH----H-----------HHHHH----HhcCCEEEEcCCCCCCCHHHHHH--HHHH
Confidence 43 3579999999999985421100 0 01121 12456788999999999999995 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
++
T Consensus 170 ~~ 171 (219)
T PLN03071 170 KL 171 (219)
T ss_pred HH
Confidence 44
No 54
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.73 E-value=1.1e-17 Score=134.73 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=88.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++.+|..|+++++++|+|+|+++ ..++.+..+|+..+.+.....+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 4678899999999999999999999999999999998 677888888888887655557899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+..++.... .+...+.+ ...+.+.+|||++|.||+++|. ++.+.+
T Consensus 118 l~~~~~~~~--------------~~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~--~l~~~l 162 (164)
T cd04175 118 LEDERVVGK--------------EQGQNLAR---QWGCAFLETSAKAKINVNEIFY--DLVRQI 162 (164)
T ss_pred chhccEEcH--------------HHHHHHHH---HhCCEEEEeeCCCCCCHHHHHH--HHHHHh
Confidence 965321110 00111111 1346788999999999999995 455443
No 55
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=1.6e-17 Score=135.84 Aligned_cols=110 Identities=12% Similarity=0.187 Sum_probs=85.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++||+.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D 131 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKAD 131 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCcc
Confidence 3678999999999999999999999999999999998 678888888888776554445789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... .+..........+.++++||++|.||+++|+.
T Consensus 132 l~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 132 LEDQRQVS-----------------EEQAKALADKYGIPYFETSAATGTNVEKAVER 171 (180)
T ss_pred chhcCccC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 96532111 01111111123466889999999999999963
No 56
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=7.1e-18 Score=139.13 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=101.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.|.....+.++++++.+||++|++.++.+|..|+++++++|||+|+++ ..++.++..++..+++...
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~ 115 (184)
T smart00178 46 QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEE 115 (184)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChh
Confidence 456666666777788999999999999999999999999999999999998 6788888889998887666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCC--CCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFP--EYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp--~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..++|++|++||+|+..+ +...++...+- +..+.. ..-..+.+.++.|||++|+|+++++ +||.++
T Consensus 116 ~~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~--------~~~~~~~~~i~~~Sa~~~~g~~~~~--~wl~~~ 183 (184)
T smart00178 116 LATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSK--------GKVGVRPLEVFMCSVVRRMGYGEGF--KWLSQY 183 (184)
T ss_pred hcCCCEEEEEeCccccCC-CCHHHHHHHcCCCcccccc--------cccCCceeEEEEeecccCCChHHHH--HHHHhh
Confidence 678999999999998642 22222222110 000000 0001156789999999999999999 677654
No 57
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.72 E-value=1.1e-17 Score=134.05 Aligned_cols=126 Identities=20% Similarity=0.296 Sum_probs=94.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|++...+..+++++++||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+++...
T Consensus 28 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 97 (158)
T cd04151 28 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD----------RDRLGTAKEELHAMLEEEE 97 (158)
T ss_pred CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 477887777777788999999999999999999999999999999999998 5566666777777766555
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|++|++||+|+.+.. ....+...+ + ...+..+.+.++++||++|.||+++|+
T Consensus 98 ~~~~piiiv~nK~Dl~~~~-~~~~i~~~~----~---------~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 98 LKGAVLLVFANKQDMPGAL-SEAEISEKL----G---------LSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred hcCCcEEEEEeCCCCCCCC-CHHHHHHHh----C---------ccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 5679999999999986421 000010000 0 001112345688999999999999995
No 58
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=2.3e-17 Score=132.23 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=83.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.+...|++.+.+.....++|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4678899999999999999999999999999999998 677888888887777654446799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++... . .+..-+.+ ...+.++++||++|.||.++|.
T Consensus 118 l~~~~~~~----~----------~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 118 LEDERVVS----R----------EEGQALAR---QWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ccccceec----H----------HHHHHHHH---HcCCeEEEecCCCCCCHHHHHH
Confidence 86422100 0 00111111 1236678999999999999995
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.72 E-value=3.4e-17 Score=131.61 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=85.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.+...|+..+.+.....+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 48 PSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3578899999999999999999999999999999998 677888888877777654446899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
+..++. .. ............+.+++|||++|.||.++|. ++...
T Consensus 118 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~--~l~~~ 161 (163)
T cd04176 118 LESERE----VS-------------SAEGRALAEEWGCPFMETSAKSKTMVNELFA--EIVRQ 161 (163)
T ss_pred chhcCc----cC-------------HHHHHHHHHHhCCEEEEecCCCCCCHHHHHH--HHHHh
Confidence 854221 00 0011111111235678999999999999995 44443
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=2.3e-17 Score=133.72 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=93.3
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+......+ +.+.+.+||++|++.+..++..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 99 (166)
T cd00877 30 VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLV 99 (166)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 5666765544443 45789999999999999999999999999999999998 677777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
+.. .++|++|++||+|+..+.... . ...+. ..+.+.+++|||++|+||+++|+ +|.+
T Consensus 100 ~~~--~~~piiiv~nK~Dl~~~~~~~----~-----------~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~--~l~~ 156 (166)
T cd00877 100 RVC--GNIPIVLCGNKVDIKDRKVKA----K-----------QITFH----RKKNLQYYEISAKSNYNFEKPFL--WLAR 156 (166)
T ss_pred HhC--CCCcEEEEEEchhcccccCCH----H-----------HHHHH----HHcCCEEEEEeCCCCCChHHHHH--HHHH
Confidence 543 389999999999986321100 0 01111 12557789999999999999995 4555
Q ss_pred hcc
Q psy6623 243 KIK 245 (262)
Q Consensus 243 ~i~ 245 (262)
.+.
T Consensus 157 ~~~ 159 (166)
T cd00877 157 KLL 159 (166)
T ss_pred HHH
Confidence 443
No 61
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=2.1e-17 Score=136.16 Aligned_cols=126 Identities=21% Similarity=0.239 Sum_probs=91.4
Q ss_pred ecccceeEEEEee-----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF-----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|+....+.+ +++.+.+|||+|+++++.+|..|+++++++|+|+|+++ ..++.++..++..+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~i 101 (183)
T cd04152 32 VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD----------VERMEEAKTELHKI 101 (183)
T ss_pred CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4677766554444 35789999999999999999999999999999999998 56777777777777
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHh-hhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESL-KLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f-~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.......+.|++|++||+|+... .....+. .++. ... ..+.+.++++||++|+||+++|+.
T Consensus 102 ~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 164 (183)
T cd04152 102 TRFSENQGVPVLVLANKQDLPNA-LSVSEVE--------------KLLALHELSASTPWHVQPACAIIGEGLQEGLEK 164 (183)
T ss_pred HhhhhcCCCcEEEEEECcCcccc-CCHHHHH--------------HHhCccccCCCCceEEEEeecccCCCHHHHHHH
Confidence 75544457999999999998641 1110000 0000 000 012356889999999999999974
No 62
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.72 E-value=9e-18 Score=135.37 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=96.5
Q ss_pred cccCCCCCCcCccccceeeecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccc
Q psy6623 68 DRLGAKEYQPTEQDILRTRVKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLH 143 (262)
Q Consensus 68 ~ri~~~~y~pt~~Dil~~~~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~ 143 (262)
.|+....|.++. .||+|... ..+.+++ +.+++||++|++.++.+|..|+++++++++|+|+++
T Consensus 18 ~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~------ 84 (161)
T cd04117 18 CRFTDNEFHSSH-------ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS------ 84 (161)
T ss_pred HHHhcCCCCCCC-------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC------
Confidence 344555565533 56777543 3444443 678999999999999999999999999999999998
Q ss_pred cCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecc
Q psy6623 144 EDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNK 223 (262)
Q Consensus 144 e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~t 223 (262)
.+++++...|++.+.+. ...+.|+++++||.|+..++.... .+...+.+ ...+.+++|
T Consensus 85 ----~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~--------------~~~~~~~~---~~~~~~~e~ 142 (161)
T cd04117 85 ----ERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGD--------------EQGNKLAK---EYGMDFFET 142 (161)
T ss_pred ----HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCH--------------HHHHHHHH---HcCCEEEEE
Confidence 78888888888777643 235799999999999865321110 01112221 123557899
Q ss_pred cccccceeeeeeh
Q psy6623 224 WFTDTSIILFLNK 236 (262)
Q Consensus 224 sA~d~~~I~~~f~ 236 (262)
||++|.||+++|.
T Consensus 143 Sa~~~~~v~~~f~ 155 (161)
T cd04117 143 SACTNSNIKESFT 155 (161)
T ss_pred eCCCCCCHHHHHH
Confidence 9999999999995
No 63
>KOG0394|consensus
Probab=99.71 E-value=1.7e-18 Score=138.62 Aligned_cols=130 Identities=8% Similarity=0.021 Sum_probs=92.2
Q ss_pred eeecccceeEEEEe--e--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHFS--F--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~--~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.+..|||....+.+ + +-+.++|||||||++|+++.-.+||++|++++|+|+.+- .+...+..|.+.|-.
T Consensus 37 qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~-------~Sfe~L~~Wr~EFl~ 109 (210)
T KOG0394|consen 37 QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP-------KSFENLENWRKEFLI 109 (210)
T ss_pred HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh-------hhhccHHHHHHHHHH
Confidence 34678886544333 3 348899999999999999999999999999999999982 223555555555544
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhh--hccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEK--IKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~k--l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
-.+-.....-|+||+|||.|+.+.+ ....... ..|-.. .+.+.+++||||+..||..+|..
T Consensus 110 qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A-------------q~WC~s---~gnipyfEtSAK~~~NV~~AFe~ 172 (210)
T KOG0394|consen 110 QASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA-------------QTWCKS---KGNIPYFETSAKEATNVDEAFEE 172 (210)
T ss_pred hcCCCCCCcccEEEEcccccCCCCccceeeHHHH-------------HHHHHh---cCCceeEEecccccccHHHHHHH
Confidence 4443344577999999999997622 1111111 112211 15688999999999999999985
No 64
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.71 E-value=3.8e-17 Score=131.96 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=89.0
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+... .+.. +.+.+++||++|++.++..|..++++++++++|+|+++ .+++.+...|++.+.
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~ 100 (165)
T cd01865 31 VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIK 100 (165)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 566664332 2332 34789999999999999999999999999999999998 677887777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++... .....+......+.++++||++|.||.++|+.
T Consensus 101 ~~-~~~~~piivv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 101 TY-SWDNAQVILVGNKCDMEDERVVS-----------------SERGRQLADQLGFEFFEASAKENINVKQVFER 157 (165)
T ss_pred Hh-CCCCCCEEEEEECcccCcccccC-----------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 43 23478999999999996532110 01111111123466889999999999999963
No 65
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=5.9e-18 Score=144.51 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=81.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+.++||||+||+.++.++..||++++++|+|+|+++ .+++... ..|+..+... ..++|++|||||
T Consensus 59 ~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK 126 (232)
T cd04174 59 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWKAEIMDY--CPSTRILLIGCK 126 (232)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 45789999999999999999999999999999999998 7788775 4555555532 246899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccc-eeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTS-IILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~-~I~~~f~~ 237 (262)
+||..+.-....+... -...-. .+-..+......+ .+++|||++|+ ||+++|..
T Consensus 127 ~DL~~~~~~~~~l~~~---~~~~Vs--~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~ 182 (232)
T cd04174 127 TDLRTDLSTLMELSNQ---KQAPIS--YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRS 182 (232)
T ss_pred cccccccchhhhhccc---cCCcCC--HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence 9985421000000000 000000 1111111222445 47899999998 89999985
No 66
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=9.6e-18 Score=137.81 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=81.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++++|||+||+.++.++..||++++++|+|+|+++ ..++... ..|+..+... ..++|++|||||
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK 114 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF--CPNTKVLLVGCK 114 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH--CCCCCEEEEEEC
Confidence 34789999999999999999999999999999999998 7888876 4566555543 247899999999
Q ss_pred CchhhhhhccCCCcccCCCCCC-CCcchhHHHHHHhhhccc-eeecccccccce-eeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAG-KRPGERNRMQESLKLFDS-ICNNKWFTDTSI-ILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g-~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~-I~~~f~~ 237 (262)
+||..+.-....+.. ... +-. .+-..+......+ .+++|||++|+| |+++|..
T Consensus 115 ~DL~~~~~~~~~~~~----~~~~~v~--~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 115 TDLRTDLSTLMELSH----QRQAPVS--YEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred hhhhcChhHHHHHHh----cCCCCCC--HHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHH
Confidence 999542100000000 000 000 1111111122444 578999999995 9999975
No 67
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.70 E-value=5.4e-17 Score=133.96 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=99.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.....+.+++..+.+||++|++.++..|..|+++++++|+|+|+++ ..++.++..++..+++...
T Consensus 48 ~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~ 117 (190)
T cd00879 48 VPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEE 117 (190)
T ss_pred CCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCcc
Confidence 467777777788888999999999999999999999999999999999998 6778888889999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-hhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-KLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..+.|++|++||+|+... +....+.+.+-.+.-.. .+.+...- ..+.+.++.|||++|+||.++| .||.+.
T Consensus 118 ~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~--~~l~~~ 189 (190)
T cd00879 118 LANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTT---GKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF--RWLSQY 189 (190)
T ss_pred ccCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccc---cccccccccCceeEEEEEeEecCCCChHHHH--HHHHhh
Confidence 678999999999998531 11111111110000000 00000000 0134668899999999999999 566543
No 68
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=5.1e-17 Score=134.47 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=84.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+++|||+|++.++.+|..|+++++++|+|+|+++ ..++.+...|+..+.+.....++|++|++||+
T Consensus 51 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 120 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDRVPMILVGNKC 120 (189)
T ss_pred EEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 44678999999999999999999999999999999998 67777777777777654444588999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++ ++. ............+.+++|||++|.||.++|..
T Consensus 121 Dl~~~~----~i~-------------~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 121 DLDSER----QVS-------------TGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred cccccc----ccC-------------HHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 985421 110 00111111113456789999999999999963
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.70 E-value=5.9e-17 Score=136.89 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=87.6
Q ss_pred ecccceeE--EEEeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|+.. ..+.+. .+.+++||++|++.++.+|..|+++++++|+|+|+++ .+++.....|+..+
T Consensus 30 ~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~----------~~s~~~~~~w~~~l 99 (215)
T cd04109 30 KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN----------SQSFENLEDWYSMV 99 (215)
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 56666543 333432 4789999999999999999999999999999999998 66777766666666
Q ss_pred HhCCC--CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKW--FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~--~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+... ..++|++|++||+|+..++-...... ..+.. ...+.++++||++|+||.++|+.
T Consensus 100 ~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~-------------~~~~~----~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 100 RKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH-------------ARFAQ----ANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred HHhccccCCCceEEEEEECcccccccccCHHHH-------------HHHHH----HcCCEEEEEECCCCCCHHHHHHH
Confidence 54321 24578999999999964221100000 11211 13466788999999999999964
No 70
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=3.6e-17 Score=131.91 Aligned_cols=132 Identities=20% Similarity=0.310 Sum_probs=100.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|.....+.+++..+.+||++|++.++.+|..++++++++|+|+|.++ ..++.+...++..+.+..
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~----------~~~~~~~~~~~~~~~~~~ 103 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTD----------RERFEESKSALEKVLRNE 103 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECch----------HHHHHHHHHHHHHHHhCh
Confidence 4688898888888889999999999999999999999999999999999987 567888888888888766
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
...++|++|++||+|+... .....+...+.++. .......+.++.+||++|+||+++| .||.
T Consensus 104 ~~~~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~g~gv~e~~--~~l~ 165 (167)
T cd04160 104 ALEGVPLLILANKQDLPDA-LSVEEIKEVFQDKA-----------EEIGRRDCLVLPVSALEGTGVREGI--EWLV 165 (167)
T ss_pred hhcCCCEEEEEEccccccC-CCHHHHHHHhcccc-----------ccccCCceEEEEeeCCCCcCHHHHH--HHHh
Confidence 6678999999999998642 11111111111110 0011144678999999999999998 4553
No 71
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=6.1e-17 Score=129.63 Aligned_cols=126 Identities=22% Similarity=0.312 Sum_probs=94.0
Q ss_pred ecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.||+|+....+.. +++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.++..++..++...
T Consensus 28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~----------~~~~~~~~~~~~~~~~~~ 97 (160)
T cd04156 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD----------EARLDESQKELKHILKNE 97 (160)
T ss_pred cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHhch
Confidence 5777766655555 35789999999999999999999999999999999998 678888888999988766
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...++|++|++||+|+... ....++...+. ...+. .+.+.+++|||++|+||.++|+
T Consensus 98 ~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 98 HIKGVPVVLLANKQDLPGA-LTAEEITRRFK-------------LKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred hhcCCCEEEEEECcccccC-cCHHHHHHHcC-------------CcccCCCCcEEEEecccccCCChHHHHH
Confidence 6678999999999998531 11001110000 00111 1345678899999999999996
No 72
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.69 E-value=8.1e-17 Score=131.69 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=81.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK 178 (262)
+.+++.+|||+|++.++.+|..|+++++++|+|+|+++ .+++.+... |+..+... ..++|++|++||
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilvgnK 114 (174)
T cd01871 47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 114 (174)
T ss_pred EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeC
Confidence 34788999999999999999999999999999999998 677877754 55544432 247999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+...+.....+..... ..-. ..-..+.... +.+.+++|||++|+||.++|..
T Consensus 115 ~Dl~~~~~~~~~~~~~~~---~~v~--~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 169 (174)
T cd01871 115 LDLRDDKDTIEKLKEKKL---TPIT--YPQGLAMAKEIGAVKYLECSALTQKGLKTVFDE 169 (174)
T ss_pred hhhccChhhHHHHhhccC---CCCC--HHHHHHHHHHcCCcEEEEecccccCCHHHHHHH
Confidence 999643221111111000 0000 1111111111 2246789999999999999963
No 73
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=9.8e-17 Score=129.25 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=83.4
Q ss_pred EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 94 EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 94 ~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
...+.+++ +.+.+||++||+. ..|+++++++|+|+|+++ .++++++..|+..+.......++|
T Consensus 37 ~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~~p 101 (158)
T cd04103 37 KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISEIP 101 (158)
T ss_pred EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 34455544 6799999999975 357899999999999999 899999989999888765556799
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++|++||.|+.... ..++.. ..| .++..+ .+.+.+++|||++|.||+++|..
T Consensus 102 iilvgnK~Dl~~~~--~~~v~~----~~~-----~~~~~~---~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 102 LILVGTQDAISESN--PRVIDD----ARA-----RQLCAD---MKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred EEEEeeHHHhhhcC--CcccCH----HHH-----HHHHHH---hCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999985311 111111 000 112111 13578899999999999999963
No 74
>KOG0088|consensus
Probab=99.69 E-value=1.2e-17 Score=130.72 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=85.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
....+.||||+||++|..+-+.||++++|+|+|+|++| ..+++..+.|..++.... -..+.++||+||+
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD----------rdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKi 128 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD----------RDSFQKVKNWVLELRTML-GNEIELLIVGNKI 128 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc----------hHHHHHHHHHHHHHHHHh-CCeeEEEEecCcc
Confidence 34679999999999999999999999999999999999 788888888877776432 2357899999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||.+++-...+... .|.+. -.-.+..|||++..+|.++|..
T Consensus 129 DLEeeR~Vt~qeAe-------------~YAes----vGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 129 DLEEERQVTRQEAE-------------AYAES----VGALYMETSAKDNVGISELFES 169 (218)
T ss_pred cHHHhhhhhHHHHH-------------HHHHh----hchhheecccccccCHHHHHHH
Confidence 99887654433222 22222 1233567999999999999974
No 75
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.2e-16 Score=134.67 Aligned_cols=124 Identities=10% Similarity=0.104 Sum_probs=91.6
Q ss_pred ecccceeEEE--Eeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|..... +.+. .+++++||++|+++++.+|..|+++++++|+|+|+++ .+++.+...|+..+
T Consensus 32 ~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i 101 (211)
T cd04111 32 DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEA 101 (211)
T ss_pred CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 4666654432 3332 3678999999999999999999999999999999998 78888888888888
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
........+|++|++||+|+..++.... .+...+.+ ...+.+++|||++|.||.++|+.
T Consensus 102 ~~~~~~~~~~iilvgNK~Dl~~~~~v~~--------------~~~~~~~~---~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 102 RSHIQPHRPVFILVGHKCDLESQRQVTR--------------EEAEKLAK---DLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred HHhcCCCCCeEEEEEEccccccccccCH--------------HHHHHHHH---HhCCEEEEEeCCCCCCHHHHHHH
Confidence 7654445688999999999865221100 00111111 24477899999999999999964
No 76
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.68 E-value=1e-16 Score=132.70 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCeEEEEeeC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTSIILFLNK 178 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~piil~~NK 178 (262)
.+.+++||++|+++++.+|..||++++++|+|+|+++ .+++.....|+..+.+.. ...++|++|++||
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS----------RSTFERVERFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEC
Confidence 3678999999999999999999999999999999998 666666666666665432 1357899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++. +. ..-.........+.++++||++|.||.++|..
T Consensus 116 ~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 116 CDKVYERE----VS-------------TEEGAALARRLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred hhccccCc----cC-------------HHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 99864221 10 00111111123467889999999999999964
No 77
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.68 E-value=1.3e-16 Score=135.57 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=83.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+|||+||+.++.+|..+|++++++|+|+|+++ ..++......|...+.. ...++|++|||||+
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~ 115 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPNAKVVLVGCKL 115 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEEECc
Confidence 35789999999999999999999999999999999998 78888887666554433 33579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccce-eeeeehhh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSI-ILFLNKKD 238 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~-I~~~f~~~ 238 (262)
||....-....+... ..-+-. .+...+...... +.+++|||+++++ |+++|...
T Consensus 116 DL~~~~~~~~~~~~~---~~~pIs--~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 116 DMRTDLATLRELSKQ---RLIPVT--HEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred ccccchhhhhhhhhc---cCCccC--HHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 996421000000000 000000 111111111223 4688999999985 99999874
No 78
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.68 E-value=1.9e-16 Score=127.20 Aligned_cols=124 Identities=10% Similarity=0.101 Sum_probs=88.2
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+... .+.. ..+.+++||++|++.++.+|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~~ 99 (168)
T cd04119 30 LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD----------RQSFEALDSWLKEMK 99 (168)
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHhHHHHHHHHH
Confidence 566665432 3333 35789999999999999999999999999999999998 566666666666665
Q ss_pred hCCC----CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKW----FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~----~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... ..+.|+++++||+|+..++... ..-.........+.++++||++|.||.++|+.
T Consensus 100 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 161 (168)
T cd04119 100 QEGGPHGNMENIVVVVCANKIDLTKHRAVS-----------------EDEGRLWAESKGFKYFETSACTGEGVNEMFQT 161 (168)
T ss_pred HhccccccCCCceEEEEEEchhcccccccC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 4321 2568999999999986421100 01111111224467899999999999999964
No 79
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=1.8e-16 Score=131.29 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+++||++|++.++.+|..||++++++|+|+|+++ .+++.... .|+..+... ..++|++|++||
T Consensus 46 ~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~----------~~sf~~~~~~~~~~i~~~--~~~~piilvgNK 113 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS----------PDSLENVESKWLGEIREH--CPGVKLVLVALK 113 (189)
T ss_pred EEEEEEEEECCCChhccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 34789999999999999999999999999999999998 67776664 355555532 247999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+|+..++-....+... +.......-....... +.+.+++|||++|.||+++|.
T Consensus 114 ~Dl~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 114 CDLREARNERDDLQRY-----GKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred hhhccChhhHHHHhhc-----cCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHH
Confidence 9997543211100000 0000001111111111 236789999999999999995
No 80
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.67 E-value=5.8e-17 Score=131.27 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=86.4
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ +.+.+++||++|+++++.+|..|+++++++|+|+|+++ ..++.....|...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 104 (170)
T cd04116 35 FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD----------SQSFQNLSNWKKEFI 104 (170)
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHH
Confidence 466665432 3333 34788999999999999999999999999999999998 566666666666555
Q ss_pred hCC---CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNK---WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~---~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ...++|++|++||+|+....+....+ .++..+ + ..+.+++|||++|.||.++|..
T Consensus 105 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~--------------~~~~~~-~--~~~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 105 YYADVKEPESFPFVVLGNKNDIPERQVSTEEA--------------QAWCRE-N--GDYPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred HhcccccCCCCcEEEEEECccccccccCHHHH--------------HHHHHH-C--CCCeEEEEECCCCCCHHHHHHH
Confidence 422 23568999999999986311110000 122211 1 2246789999999999999963
No 81
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=1.9e-16 Score=132.19 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=90.0
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+.. ..+.+. .+.+.+||++|++.++.+|..|+++++++|+|+|+++ .+++.+...|+..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~ 105 (199)
T cd04110 36 ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIE 105 (199)
T ss_pred CccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 46666443 333333 3678999999999999999999999999999999998 678888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ....|++|++||+|+...+... ............+.++++||++|.||.++|+.
T Consensus 106 ~~--~~~~piivVgNK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 106 QN--CDDVCKVLVGNKNDDPERKVVE-----------------TEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred Hh--CCCCCEEEEEECcccccccccC-----------------HHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 53 2578999999999986422100 11111111123477889999999999999974
No 82
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.67 E-value=2.5e-16 Score=128.30 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=88.2
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+++++||++|++.++.+|..+|++++++|+|+|+++ ..++.....|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~ 99 (170)
T cd04108 30 KATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD----------VASLEHTRQWLEDAL 99 (170)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555433 233333 3679999999999999999999999999999999988 667777778887776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.....+.|+++|+||.|+..+.- .... .........+....++++||++|.||.++|..
T Consensus 100 ~~~~~~~~~iilVgnK~Dl~~~~~--~~~~-------------~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 100 KENDPSSVLLFLVGTKKDLSSPAQ--YALM-------------EQDAIKLAAEMQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred HhcCCCCCeEEEEEEChhcCcccc--cccc-------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 554445688999999999853210 0000 00111111113345678999999999999964
No 83
>KOG0097|consensus
Probab=99.67 E-value=2.4e-17 Score=126.76 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=89.6
Q ss_pred eecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
...|+|+...+ +++ ..+++++||++||++||....+||+++.+.+.|+|++. .......-.|+...
T Consensus 40 cphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr----------rstynhlsswl~da 109 (215)
T KOG0097|consen 40 CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDA 109 (215)
T ss_pred CCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh----------hhhhhhHHHHHhhh
Confidence 35678865433 333 45899999999999999999999999999999999997 33333333333333
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+ -...+..|+|++||.||..++-...+..+.|.+- ..+.+.++||++|+||+..|-.
T Consensus 110 r~-ltnpnt~i~lignkadle~qrdv~yeeak~faee-----------------ngl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 110 RN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-----------------NGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred hc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhh-----------------cCeEEEEecccccCcHHHHHHH
Confidence 22 2235788999999999987664444444444443 4477889999999999998854
No 84
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.67 E-value=3.4e-16 Score=127.10 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=89.5
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccc-hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSER-KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r-~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+|+|+.. ..+.++ .+.+++||++|++.++ .+|..|+++++++|+|+|+++ ..++.....|+..+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~ 101 (170)
T cd04115 32 EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEEC 101 (170)
T ss_pred ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHH
Confidence 45666433 234443 3789999999999987 589999999999999999998 67788887777777
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccc---cceeeeeeh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTD---TSIILFLNK 236 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d---~~~I~~~f~ 236 (262)
.......++|++|++||+|+...+... ............+.+++|||++ +.+|.++|.
T Consensus 102 ~~~~~~~~~p~iiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~ 162 (170)
T cd04115 102 EQHSLPNEVPRILVGNKCDLREQIQVP-----------------TDLAQRFADAHSMPLFETSAKDPSENDHVEAIFM 162 (170)
T ss_pred HHhcCCCCCCEEEEEECccchhhcCCC-----------------HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHH
Confidence 665444679999999999987532111 1111111122446788999999 889999995
No 85
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=3.2e-16 Score=126.82 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=89.1
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+++||++|++.+...|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~ 102 (167)
T cd01867 33 ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIE 102 (167)
T ss_pred ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHH
Confidence 45555432 233333 3688999999999999999999999999999999988 677777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+..++... ..-..+......+.++++||++|.||.++|..
T Consensus 103 ~~~-~~~~p~iiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 103 EHA-SEDVERMLVGNKCDMEEKRVVS-----------------KEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred HhC-CCCCcEEEEEECcccccccCCC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 3578999999999997532100 11112222224567899999999999999963
No 86
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.66 E-value=3.8e-16 Score=125.76 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=79.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.+. ..+.|++|++||+
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~ 114 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR----------KITYKNLSKWYEELREY--RPEIPCIVVANKI 114 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEECc
Confidence 45788999999999999999999999999999999987 55666666666666432 2468999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+.... .. . + ..+.. ...+.++++||++|.||.++|+.
T Consensus 115 Dl~~~~-~~----~------~-----~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 115 DLDPSV-TQ----K------K-----FNFAE----KHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred cCchhH-HH----H------H-----HHHHH----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 984310 00 0 0 11111 13466788999999999999974
No 87
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=2.1e-16 Score=126.19 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=82.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++.+|..|+++++++++|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 48 ~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 117 (162)
T cd04138 48 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS----------RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCD 117 (162)
T ss_pred EEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3568899999999999999999999999999999998 667777777777776544446789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+...... ..-.........+.+++|||++|.||+++|.
T Consensus 118 l~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 118 LAARTVS------------------SRQGQDLAKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred cccceec------------------HHHHHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence 8642100 0111111122346788999999999999995
No 88
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=4.3e-16 Score=125.66 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=88.5
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+++||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~ 101 (166)
T cd01869 32 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEID 101 (166)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHH
Confidence 45555432 334343 4678999999999999999999999999999999998 677777777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|+++++||+|+..++... .+-.........+.++++||++|+||.++|..
T Consensus 102 ~~~-~~~~~~iiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 102 RYA-SENVNKLLVGNKCDLTDKRVVD-----------------YSEAQEFADELGIPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred HhC-CCCCcEEEEEEChhcccccCCC-----------------HHHHHHHHHHcCCeEEEEECCCCcCHHHHHHH
Confidence 432 2468999999999986532100 01111111123467899999999999999963
No 89
>PLN03110 Rab GTPase; Provisional
Probab=99.65 E-value=1.6e-16 Score=134.42 Aligned_cols=123 Identities=10% Similarity=0.077 Sum_probs=89.6
Q ss_pred ecccceeEE--EEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|+... .+.++ .+.+++||++|+++++.+|..++++++++|+|+|+++ ..+++....|+..+.
T Consensus 42 ~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~ 111 (216)
T PLN03110 42 KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVQRWLRELR 111 (216)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 567776543 34443 4789999999999999999999999999999999998 567776667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+...+-.. .+..........+.+++|||++|.||.++|+.
T Consensus 112 ~~-~~~~~piiiv~nK~Dl~~~~~~~-----------------~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 112 DH-ADSNIVIMMAGNKSDLNHLRSVA-----------------EEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred Hh-CCCCCeEEEEEEChhcccccCCC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 43 23579999999999985422110 01111111124577899999999999999974
No 90
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=7.8e-16 Score=123.92 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=88.2
Q ss_pred ecccceeEEE--Eeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +..+ .+.+++||++|++.++.+|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 102 (165)
T cd01868 33 KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELR 102 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555643332 3333 3678999999999999999999999999999999998 677777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+...+.... .+ ..+.. ...+.++++||++|.||.++|+.
T Consensus 103 ~~~-~~~~pi~vv~nK~Dl~~~~~~~~--------------~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 103 DHA-DSNIVIMLVGNKSDLRHLRAVPT--------------EEAKAFAE----KNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred HhC-CCCCeEEEEEECccccccccCCH--------------HHHHHHHH----HcCCEEEEEECCCCCCHHHHHHH
Confidence 542 34689999999999865321100 00 12221 24567889999999999999963
No 91
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.64 E-value=9.2e-16 Score=132.40 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=85.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--------CCCCCeE
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--------WFTDTSI 172 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--------~~~~~pi 172 (262)
.+.++||||+|++.++.++..++.+++++|+|+|+++ ..++++...|++.+.... ...++|+
T Consensus 47 ~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~pi 116 (247)
T cd04143 47 VYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPM 116 (247)
T ss_pred EEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcE
Confidence 3778999999999999999999999999999999998 788888888888887542 2357899
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+..++- +. .+-+.+.+.. ..+.++++||++|.||+++|..
T Consensus 117 IivgNK~Dl~~~~~----v~-------------~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~ 165 (247)
T cd04143 117 VICGNKADRDFPRE----VQ-------------RDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165 (247)
T ss_pred EEEEECccchhccc----cC-------------HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999964211 00 1122222211 3467899999999999999964
No 92
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=7.3e-16 Score=128.48 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=78.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK 178 (262)
..+++++|||+||+. .....||++++++|+|+|+++ ..+++.... |...+... ..++|++|+|||
T Consensus 64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK 129 (195)
T cd01873 64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF--CPRVPVILVGCK 129 (195)
T ss_pred EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh--CCCCCEEEEEEc
Confidence 357899999999975 355679999999999999998 677877764 55555432 247899999999
Q ss_pred Cchhhhhhcc-----CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKK-----SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~-----~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+||....... .++..- -.+......+-..+......+.+++|||++|+||+++|..
T Consensus 130 ~DL~~~~~~~~~~~~~~~~~~---~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 130 LDLRYADLDEVNRARRPLARP---IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred hhccccccchhhhcccccccc---cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHH
Confidence 9986421100 000000 0000000011122222224567899999999999999964
No 93
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.64 E-value=1.1e-15 Score=125.76 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=80.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ .+++++... |+..+... ..++|++|++||+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 115 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCh
Confidence 4678999999999999999999999999999999998 677777754 44444322 2478999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......+. ..-..+......+ .+++|||++|.||.++|..
T Consensus 116 Dl~~~~~~~~~v~-------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 116 DLRKDKNLDRKVT-------------PAQAESVAKKQGAFAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred hhhhCccccCCcC-------------HHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHH
Confidence 9965321111110 1111111111233 6789999999999999974
No 94
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.64 E-value=2.6e-16 Score=124.65 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=95.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|++.++..|..++++++++++|+|+++ ..++.....++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 98 (159)
T cd04159 29 IPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD----------RTALEAAKNELHDLLEKPS 98 (159)
T ss_pred cCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChh
Confidence 688888877777788999999999999999999999999999999999997 5667777778888776655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH-HHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM-QESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i-~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|++|++||+|+..+.. .... ...+ ......+.+.++++||++|.||.++|+
T Consensus 99 ~~~~p~iiv~nK~D~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 99 LEGIPLLVLGNKNDLPGALS----VDEL-----------IEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred hcCCCEEEEEeCccccCCcC----HHHH-----------HHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 56899999999999864210 0000 0000 001112446778999999999999985
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.63 E-value=9.1e-16 Score=123.06 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=84.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.+.....+.|++|++||+|
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 4678999999999999999999999999999999998 677778777877777643345789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. .....+......+.++++||++|.||.++|+.
T Consensus 119 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 119 LEHQRK----VS-------------REEGQELARKLKIPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred ccccce----ec-------------HHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHH
Confidence 865321 00 11111111223466789999999999999963
No 96
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.63 E-value=9.2e-16 Score=123.87 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=80.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC--CCCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN--KWFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~--~~~~~~piil~~N 177 (262)
+.+.+++||++|+++++.+|..++++++++|+|+|+++ ..++.+...+++.+.+. ....++|++|++|
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 45789999999999999999999999999999999998 56666666666555432 1235789999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+|+...+ ++. .+..........+.++++||++|.||+++|+
T Consensus 117 K~Dl~~~~----~v~-------------~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 117 KCDESHKR----EVS-------------SNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CccccccC----eec-------------HHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 99985421 110 0011111112345678999999999999995
No 97
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.63 E-value=8.9e-16 Score=123.34 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=83.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|+++++.+|..++++++++|+|+|+++ ..++.+...++..+.+.....++|+++++||+
T Consensus 46 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 46 EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 34788999999999999999999999999999999998 67777777777777654444578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++....... ..+.. ...+.++++||++|.||.++|+
T Consensus 116 Dl~~~~~~~~~~~-------------~~~~~----~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 116 DLESERVVSTEEG-------------KELAR----QWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred cccccceEcHHHH-------------HHHHH----HcCCEEEEeecCCCCCHHHHHH
Confidence 9865321100000 11221 1346688999999999999996
No 98
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.63 E-value=1.4e-15 Score=123.28 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=89.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.. +.+.+.+||++|++.++.++..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~ 103 (168)
T cd01866 34 DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDAR 103 (168)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 355564332 2333 34789999999999999999999999999999999998 678888888887776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++|++||.|+..++. .. ............+.++++||++++||.++|.
T Consensus 104 ~~~-~~~~pvivv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 104 QHS-NSNMTIMLIGNKCDLESRRE----VS-------------YEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred HhC-CCCCcEEEEEECcccccccC----CC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 542 35799999999999864211 00 1112222222457789999999999999995
No 99
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4e-16 Score=128.78 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=81.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.... ..++|++|++||+|
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~D 116 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD----------QESFENLKFWINEINRYA-RENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCC
Confidence 4778999999999999999999999999999999998 677777777776665432 24589999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+...+....... ..+.. ...+.++++||++|.||+++|..
T Consensus 117 l~~~~~v~~~~~-------------~~~~~----~~~~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 117 LVNNKVVDSNIA-------------KSFCD----SLNIPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred CcccccCCHHHH-------------HHHHH----HcCCeEEEEeCCCCCCHHHHHHH
Confidence 874321110000 11211 13456889999999999999974
No 100
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.63 E-value=1.3e-15 Score=122.23 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=91.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.......+ ..+.+++||++|++.+..++..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~ 98 (162)
T PF00071_consen 29 IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQ 98 (162)
T ss_dssp ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------ccccccccccccccc
Confidence 5666655443333 45789999999999999999999999999999999998 678888777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... .++|++|+|||.|+..++. +. .+-........+..++++||+++.||.++|..
T Consensus 99 ~~~~-~~~~iivvg~K~D~~~~~~----v~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 99 KYKP-EDIPIIVVGNKSDLSDERE----VS-------------VEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp HHST-TTSEEEEEEETTTGGGGSS----SC-------------HHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred cccc-ccccceeeecccccccccc----ch-------------hhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 5432 5699999999999976221 10 11112222234478899999999999999974
No 101
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=1.7e-15 Score=121.54 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=84.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.++++.+||++|+++++..|..++++++++|+|+|+++ ..++..+..++..+..... .++|++|++||+
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~ 116 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PNIIIALVGNKA 116 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence 45789999999999999999999999999999999998 6778888888888765533 679999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+...+.. + ............+.++++||++|.|+.++|+
T Consensus 117 D~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 117 DLESKRQV--S---------------TEEAQEYADENGLLFFETSAKTGENVNELFT 156 (163)
T ss_pred cccccCcC--C---------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 98642110 0 1111121222347789999999999999995
No 102
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.5e-15 Score=122.36 Aligned_cols=122 Identities=11% Similarity=0.072 Sum_probs=87.9
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~i~ 102 (165)
T cd01864 33 GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR----------RSSFESVPHWIEEVE 102 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHhHHHHHHHHH
Confidence 3555533 33444444 688999999999999999999999999999999998 667777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++|++||+|+...+... .+........ +...++++||++|.||.++|+
T Consensus 103 ~~~-~~~~p~ivv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 103 KYG-ASNVVLLLIGNKCDLEEQREVL-----------------FEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred HhC-CCCCcEEEEEECcccccccccC-----------------HHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 432 3578999999999986532100 1111111111 234678999999999999995
No 103
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=1.6e-15 Score=121.54 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=82.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...++|++|++||.|
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D 116 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN----------RTSFEALPTWLSDARAL-ASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchh
Confidence 4678999999999999999999999999999999998 56777777776665432 235789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++. . . .+.+........+.++++||+++.||.++|+
T Consensus 117 ~~~~~~----~-----------~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 117 LADQRE----V-----------T--FLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred cchhcc----C-----------C--HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 865210 0 0 1122222223457899999999999999995
No 104
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.63 E-value=1.1e-15 Score=122.41 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=81.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++++||++|++.++.+|..|+++++++++|+|+++ ..++.....|...+.. ...++|++|++||.|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D 117 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD----------RESFEAIESWKEKVEA--ECGDIPMVLVQTKID 117 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence 4789999999999999999999999999999999998 5666666666655543 235799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
+..+..... .+...+.+ ...+.++++||+++.|++++|+ +|..
T Consensus 118 l~~~~~v~~--------------~~~~~~~~---~~~~~~~~~Sa~~~~~v~~l~~--~l~~ 160 (162)
T cd04106 118 LLDQAVITN--------------EEAEALAK---RLQLPLFRTSVKDDFNVTELFE--YLAE 160 (162)
T ss_pred cccccCCCH--------------HHHHHHHH---HcCCeEEEEECCCCCCHHHHHH--HHHH
Confidence 965321100 00111111 1346678999999999999994 4443
No 105
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=9.5e-16 Score=122.53 Aligned_cols=126 Identities=23% Similarity=0.307 Sum_probs=99.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.+|+|+....+.++++.+.+||++|++.++..|..++++++++++|+|+++ ..++.++..++..+....
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~ 96 (158)
T cd00878 27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKLLNEE 96 (158)
T ss_pred CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCc
Confidence 3678888888888889999999999999999999999999999999999998 678999999999988765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHH-hhhccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQES-LKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~-f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...+.|+++++||+|+..+. ...++ .+.+... ...+.+.++++||++|.|+.++|+
T Consensus 97 ~~~~~piiiv~nK~D~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 97 ELKGVPLLIFANKQDLPGAL-SVSEL--------------IEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred ccCCCcEEEEeeccCCcccc-CHHHH--------------HHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 56689999999999986521 00000 1111110 112456788999999999999996
No 106
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2e-15 Score=125.12 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=87.9
Q ss_pred ecccceeEEE--Eeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|..... +.++ .+.+++||++||++++..|..++++++++|+|+|+++ .+++.+...|+..+.
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~i~ 100 (191)
T cd04112 31 IATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN----------KASFDNIRAWLTEIK 100 (191)
T ss_pred CCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 3455544322 3333 4789999999999999999999999999999999998 677777777776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++.... .+...+.. ...+.++++||++|.||.++|..
T Consensus 101 ~~-~~~~~piiiv~NK~Dl~~~~~~~~--------------~~~~~l~~---~~~~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 101 EY-AQEDVVIMLLGNKADMSGERVVKR--------------EDGERLAK---EYGVPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred Hh-CCCCCcEEEEEEcccchhccccCH--------------HHHHHHHH---HcCCeEEEEeCCCCCCHHHHHHH
Confidence 43 224789999999999864321110 00111211 13456889999999999999964
No 107
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.61 E-value=3e-15 Score=119.82 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=89.3
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +++++||++|++.++..|..++++++++|+|+|+++ .+++.+...++..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~ 99 (161)
T cd01861 30 QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVR 99 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 56666443 2333333 679999999999999999999999999999999998 677888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++|++||+|+..++... .+..........+.++++||+++.|++++|+
T Consensus 100 ~~~-~~~~~iilv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 100 DER-GNDVIIVLVGNKTDLSDKRQVS-----------------TEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred HhC-CCCCEEEEEEEChhccccCccC-----------------HHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 532 2379999999999985321100 1112222222447788999999999999995
No 108
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=5.6e-15 Score=119.94 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ ..++++... |+..+... ..++|++|++||+
T Consensus 45 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 112 (174)
T smart00174 45 PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPNTPIILVGTKL 112 (174)
T ss_pred EEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEecCh
Confidence 4678999999999999999999999999999999998 677777654 55555432 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++....++.. .... ....+-......... ..++++||++|.||.++|..
T Consensus 113 Dl~~~~~~~~~~~~----~~~~-~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 166 (174)
T smart00174 113 DLREDKSTLRELSK----QKQE-PVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEE 166 (174)
T ss_pred hhhhChhhhhhhhc----ccCC-CccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Confidence 99763321111111 0000 000111111111122 35788999999999999974
No 109
>PLN03108 Rab family protein; Provisional
Probab=99.60 E-value=3.6e-15 Score=125.61 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=88.9
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ..+.+++||++|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 36 ~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~----------~~s~~~l~~~~~~~~ 105 (210)
T PLN03108 36 DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDAR 105 (210)
T ss_pred CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHH
Confidence 45666443 22333 34678999999999999999999999999999999998 677777767777665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|+++++||+|+..++... .+..........+.++++||+++.||.++|..
T Consensus 106 ~~~-~~~~piiiv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 106 QHA-NANMTIMLIGNKCDLAHRRAVS-----------------TEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred Hhc-CCCCcEEEEEECccCccccCCC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 2578999999999986532110 11111111224577899999999999999964
No 110
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.60 E-value=3.2e-15 Score=124.90 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=83.6
Q ss_pred cceeeeecCCccccc----hh----hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCe
Q psy6623 102 LNFKLFDVGGQRSER----KK----WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTS 171 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r----~~----w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~p 171 (262)
+.+++|||+|++.+. .. ...++++++++|+|+|+++ ..+++....+++.+.+.. ...++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~~p 118 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKEPP 118 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 678899999976432 11 3446899999999999998 788888888888887653 246799
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehhhHHHhhccCCC
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP 248 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~~ 248 (262)
++|++||+|+..++... ...+..... ...+.+++|||++|.||+++|.. ++...+.+..
T Consensus 119 iiivgNK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~-i~~~~~~~~~ 178 (198)
T cd04142 119 IVVVGNKRDQQRHRFAP-----------------RHVLSVLVRKSWKCGYLECSAKYNWHILLLFKE-LLISATTRGR 178 (198)
T ss_pred EEEEEECcccccccccc-----------------HHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHH-HHHHhhccCC
Confidence 99999999996532211 111111111 13466789999999999999974 5555555443
No 111
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.59 E-value=4.4e-15 Score=120.87 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=81.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+++++||++|++.++.+|..++++++++|+|+|+++ ..++..... |+..+... ..++|++|++||.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~ 114 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRKH--NPKAPIILVGTQA 114 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEeeCh
Confidence 4678999999999999999999999999999999998 677777653 55555432 3468999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehhhHH
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
|+..+.-....+... ++ -.-. .+-......... ..+++|||++|.||+++|+..+|
T Consensus 115 Dl~~~~~~~~~~~~~-~~--~~v~--~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 115 DLRTDVNVLIQLARY-GE--KPVS--QSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hhccChhHHHHHhhc-CC--CCcC--HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 986421100000000 00 0000 111111111122 36889999999999999986444
No 112
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=2.8e-15 Score=121.92 Aligned_cols=106 Identities=10% Similarity=-0.018 Sum_probs=77.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+.+.+||++|++.++.+|..||++++++|+|+|+++ ..++.....++..+.. ..++|+++++||+|+
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl 120 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSD----------PKSFSYCAEVYKKYFM---LGEIPCLFVAAKADL 120 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHhcc---CCCCeEEEEEEcccc
Confidence 678999999999999999999999999999999988 5666666666665432 237999999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
..++..... +.+-+.+.+ .+ .++++||++|.||.++|+.
T Consensus 121 ~~~~~~~~~--------------~~~~~~~~~---~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 121 DEQQQRYEV--------------QPDEFCRKL---GLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred ccccccccc--------------CHHHHHHHc---CCCCCEEEEeccCccHHHHHHH
Confidence 643211000 011112211 12 3478999999999999964
No 113
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.59 E-value=4.8e-15 Score=120.01 Aligned_cols=112 Identities=9% Similarity=0.074 Sum_probs=83.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.++.+|..++++++++|+|+|+++ .++++....+...+.......++|+++++||.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 116 (168)
T cd04177 47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS----------EASLNELGELREQVLRIKDSDNVPMVLVGNKA 116 (168)
T ss_pred EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCCEEEEEECh
Confidence 34788999999999999999999999999999999998 66777777777777654334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+.... .+...+.+.+ +.+.++++||+.|.||.++|+.
T Consensus 117 D~~~~~~~~~--------------~~~~~~~~~~--~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 117 DLEDDRQVSR--------------EDGVSLSQQW--GNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred hccccCccCH--------------HHHHHHHHHc--CCceEEEeeCCCCCCHHHHHHH
Confidence 9865321100 0011111211 2255789999999999999963
No 114
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.59 E-value=4.2e-15 Score=119.04 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=84.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.+...|..++++++++|+|+|+++ ..+++....|+..+.......++|+++++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D 117 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNNDIVKMLVGNKID 117 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence 4789999999999999999999999999999999998 677777777777776654456899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+...... .+..........+.++++||++|+||.++|+.
T Consensus 118 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 118 KENREVT------------------REEGLKFARKHNMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred ccccccC------------------HHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence 9631100 11111111225677899999999999999963
No 115
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.59 E-value=7.3e-15 Score=121.59 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=86.7
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+++||++|+++++.+|..+|++++++|+|+|+++ ..++.+...|+..+.
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~ 100 (193)
T cd04118 31 QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD----------SSSFERAKFWVKELQ 100 (193)
T ss_pred ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45555332 234443 3678899999999999999999999999999999998 677777666776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+. ..++|++|++||+|+....-....+. ...+........+.++++||++|.||.++|+.
T Consensus 101 ~~--~~~~piilv~nK~Dl~~~~~~~~~v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 101 NL--EEHCKIYLCGTKSDLIEQDRSLRQVD-------------FHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred hc--CCCCCEEEEEEcccccccccccCccC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 43 24789999999999854210000000 11111111123456789999999999999975
No 116
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.58 E-value=7.5e-15 Score=117.11 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=81.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++.+|..++++++++|+|+|+++ .+++.....+++.+..... .++|+++++||+
T Consensus 47 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~ 115 (162)
T cd04123 47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD----------ADSFQKVKKWIKELKQMRG-NNISLVIVGNKI 115 (162)
T ss_pred EEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence 34679999999999999999999999999999999998 5666666666666654322 378999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++ ++. .+.+........+.++++||+++.||.++|+
T Consensus 116 D~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 116 DLERQR----VVS-------------KSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred cccccc----CCC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 987422 110 1122222222456678999999999999995
No 117
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.58 E-value=7.5e-15 Score=117.94 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=79.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++.+||++|++.++.+|..++++++++|+|+|+++ ..++.+...|++.+.... .++|++|++||+|
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~D 118 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSN----------KASFENCSRWVNKVRTAS--KHMPGVLVGNKMD 118 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 566766666766665432 4689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..+. .+.. ....... ....+.++.+||++|.||.++|+
T Consensus 119 l~~~~----~~~~----------~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 119 LADKA----EVTD----------AQAQAFA---QANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred ccccc----CCCH----------HHHHHHH---HHcCCeEEEEeCCCCCChHHHHH
Confidence 85421 1100 0011111 11235678999999999999995
No 118
>PLN03118 Rab family protein; Provisional
Probab=99.58 E-value=8.4e-15 Score=123.30 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=88.2
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.+....|...+
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~ 112 (211)
T PLN03118 43 APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEV 112 (211)
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 35666433 334443 4678999999999999999999999999999999998 667777766565544
Q ss_pred hC-CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~-~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ....+.|++|++||+|+..++. +. ............+.++++||++|.||+++|..
T Consensus 113 ~~~~~~~~~~~ilv~NK~Dl~~~~~----i~-------------~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 113 ELYSTNQDCVKMLVGNKVDRESERD----VS-------------REEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred HHhcCCCCCCEEEEEECccccccCc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 32 2235689999999999865321 10 11111222224567889999999999999964
No 119
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.57 E-value=5.5e-15 Score=119.86 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=96.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||.|++...+...+..+.+||++|++.++..|..++++++++++|+|.++ ..++.+...++..+.....
T Consensus 43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~ 112 (173)
T cd04155 43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEK 112 (173)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChh
Confidence 577888777778888999999999999999999999999999999999998 5677888888888776554
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|+++++||+|+.... ....+.+.+ + ...+..+.+.+.++||++|+||+++| .||.
T Consensus 113 ~~~~p~ivv~nK~D~~~~~-~~~~i~~~l----~---------~~~~~~~~~~~~~~Sa~~~~gi~~~~--~~l~ 171 (173)
T cd04155 113 LAGVPVLVFANKQDLATAA-PAEEIAEAL----N---------LHDLRDRTWHIQACSAKTGEGLQEGM--NWVC 171 (173)
T ss_pred hcCCCEEEEEECCCCccCC-CHHHHHHHc----C---------CcccCCCeEEEEEeECCCCCCHHHHH--HHHh
Confidence 5679999999999985421 000000000 0 00112245667899999999999999 4553
No 120
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.57 E-value=7.1e-15 Score=123.13 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=76.0
Q ss_pred ccccCCCCCCcCccccceeeecccceeE--EEEee-------eccceeeeecCCccccchhhhccccCCCEEEEeeeccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVE--VHFSF-------KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~--~~~~~-------~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
+.|+....|.++ +.||+|... ..+.+ +.+.+++||++|++.++.++..||++++++|+|+|+++
T Consensus 17 i~~~~~~~f~~~-------~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 17 VHLICKNQVLGR-------PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred HHHHHcCCCCCC-------CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC
Confidence 344555555442 256777433 23333 23679999999999999999999999999999999999
Q ss_pred cccccccCcccccHHHHHHHHHHHHhCC------------------CCCCCeEEEEeeCCchhhhh
Q psy6623 138 YDQVLHEDETTNRMQESLKLFDSICNNK------------------WFTDTSIILFLNKKDLFEEK 185 (262)
Q Consensus 138 ~d~~~~e~~~~~~l~e~~~~~~~i~~~~------------------~~~~~piil~~NK~Dl~~~k 185 (262)
..+++....|+..+.+.. ...++|++|+|||.|+..++
T Consensus 90 ----------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 90 ----------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred ----------hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 677877777877776521 12468999999999997654
No 121
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.57 E-value=1.2e-14 Score=121.24 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+++++||++|+..++.+|..++++++++|+|+|+++ ..++.+...++..+.......++|++|++||+|+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 788999999999999999999999999999999998 6778888888777776544467999999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... ..+. ..-..+.+. ...+.++++||++|.||.++|+.
T Consensus 117 ~~~~---~~v~-------------~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 117 LEEE---RQVP-------------AKDALSTVELDWNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred cccc---cccc-------------HHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHH
Confidence 6420 0010 011111111 12245678999999999999964
No 122
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.56 E-value=1.7e-14 Score=116.60 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=80.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC---CCCCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN---KWFTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~---~~~~~~piil~~N 177 (262)
.+.+++||++|++.+..+|..++++++++|+|+|+++ ..++.+...|...+... ....++|+++++|
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 117 (172)
T cd01862 48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------PKSFESLDSWRDEFLIQASPSDPENFPFVVLGN 117 (172)
T ss_pred EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence 4678899999999999999999999999999999987 56666666665555432 2234799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc-cceeecccccccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF-DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~-~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+|+..++... .+.+....... .+.++++||++|.|+.++|+.
T Consensus 118 K~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 118 KIDLEEKRQVS-----------------TKKAQQWCQSNGNIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred CcccccccccC-----------------HHHHHHHHHHcCCceEEEEECCCCCCHHHHHHH
Confidence 99997421000 11111111122 367889999999999999964
No 123
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=2e-14 Score=116.65 Aligned_cols=121 Identities=10% Similarity=0.039 Sum_probs=79.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++++....|...+... ..++|++|++||+|
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~D 115 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPYLLVGTQID 115 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchh
Confidence 3568899999999999999999999999999999998 667766654333333222 46799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.........+...-+.. -. .+.......... ..++++||++|.||+++|..
T Consensus 116 l~~~~~~~~~~~~~~~~~---v~--~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~ 168 (174)
T cd04135 116 LRDDPKTLARLNDMKEKP---VT--VEQGQKLAKEIGAHCYVECSALTQKGLKTVFDE 168 (174)
T ss_pred hhcChhhHHHHhhccCCC---CC--HHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHH
Confidence 865322111111110000 00 111111111122 35779999999999999975
No 124
>KOG0395|consensus
Probab=99.56 E-value=2.1e-14 Score=119.58 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=103.0
Q ss_pred CCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccH
Q psy6623 72 AKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM 151 (262)
Q Consensus 72 ~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l 151 (262)
.++|.||++|.++... .+.-+...+.|+||+||+.+..+...|.++++|.++|+++++ ..++
T Consensus 29 ~~~y~ptied~y~k~~--------~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd----------~~SF 90 (196)
T KOG0395|consen 29 VEDYDPTIEDSYRKEL--------TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD----------RSSF 90 (196)
T ss_pred ccccCCCccccceEEE--------EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC----------HHHH
Confidence 3568999987764321 122234678899999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccccee
Q psy6623 152 QESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSII 231 (262)
Q Consensus 152 ~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I 231 (262)
+++..+++.+...+...++|++|+|||+|+...|...... .........+.+.+|||+...||
T Consensus 91 ~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ee-----------------g~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395|consen 91 EEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEE-----------------GKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred HHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHH-----------------HHHHHHhcCCcEEEeeccCCcCH
Confidence 9999999999877777889999999999998754332211 11112234566889999999999
Q ss_pred eeeehh
Q psy6623 232 LFLNKK 237 (262)
Q Consensus 232 ~~~f~~ 237 (262)
.++|..
T Consensus 154 ~~~F~~ 159 (196)
T KOG0395|consen 154 DEVFYE 159 (196)
T ss_pred HHHHHH
Confidence 999974
No 125
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.54 E-value=3e-14 Score=114.05 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=87.8
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|... ..+.+++ +.+++||++|++.+...+..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~ 99 (164)
T smart00175 30 KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELR 99 (164)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 44555432 3344433 688999999999999999999999999999999998 677777777777665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.... .++|+++++||+|+...+ ... .+...+......+.++++||++|.||.++|+.
T Consensus 100 ~~~~-~~~pivvv~nK~D~~~~~----~~~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~ 156 (164)
T smart00175 100 EYAD-PNVVIMLVGNKSDLEDQR----QVS-------------REEAEAFAEEHGLPFFETSAKTNTNVEEAFEE 156 (164)
T ss_pred HhCC-CCCeEEEEEEchhccccc----CCC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 4432 479999999999975421 000 11111111123466899999999999999963
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.53 E-value=2e-14 Score=127.15 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC-----------CCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-----------FTD 169 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-----------~~~ 169 (262)
.+.++||||+||++++.+|..||++++++|+|+|+++ ..++.....|++.+..... ..+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd----------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ 151 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ----------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLP 151 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 3679999999999999999999999999999999998 6677777777777765321 236
Q ss_pred CeEEEEeeCCchhhh
Q psy6623 170 TSIILFLNKKDLFEE 184 (262)
Q Consensus 170 ~piil~~NK~Dl~~~ 184 (262)
+|++||+||+||..+
T Consensus 152 ipIILVGNK~DL~~~ 166 (334)
T PLN00023 152 VPYIVIGNKADIAPK 166 (334)
T ss_pred CcEEEEEECcccccc
Confidence 899999999999643
No 127
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.52 E-value=3.8e-14 Score=114.18 Aligned_cols=111 Identities=12% Similarity=0.168 Sum_probs=78.2
Q ss_pred eccceeeeecCCccc-cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC-CCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRS-ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-FTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~-~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-~~~~piil~~N 177 (262)
+.+++++||++|++. ....+..++++++++|+|+|+++ ..++.....|+..+..... ..++|++|++|
T Consensus 45 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 45 EQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD----------RSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 456799999999986 35668889999999999999998 6677766666655554322 34799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccc-ceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDT-SIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~-~~I~~~f~~ 237 (262)
|+|+..++. +. .+-.........+.++++||++| .||.++|..
T Consensus 115 K~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 115 KADLLHYRQ----VS-------------TEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred CCchHHhCc----cC-------------HHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 999865321 10 01111111113356789999999 599999963
No 128
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.50 E-value=8.3e-14 Score=118.30 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=78.9
Q ss_pred eccceeeeecCCccccchhhhcccc-CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFE-DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~-~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
....+.+||++|++ ......++. +++++|+|+|+++ ..++.....++..+.+.....++|++||+||
T Consensus 48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 45789999999998 333455667 9999999999998 6778877788777766544468999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++.... +..........+.+++|||+++.||.++|+.
T Consensus 116 ~Dl~~~~~v~~-----------------~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 116 SDLARSREVSV-----------------QEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred hhccccceecH-----------------HHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99865321110 0111111123466789999999999999963
No 129
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=1.1e-13 Score=112.30 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=77.8
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.++..|..++++++++++|+|+++ .+++......|...+.. ...++|++|++||+
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~ 115 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKK 115 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEeeCh
Confidence 34678999999999999999999999999999999998 55565554433333322 23578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+.........+... .+... ...+..-+...+ ..+.+++|||++|.||+++|+
T Consensus 116 Dl~~~~~~~~~i~~~-~~~~v-~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 116 DLRNDEHTRRELAKM-KQEPV-KPEEGRDMANKI--GAFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred hcccChhhhhhhhhc-cCCCc-cHHHHHHHHHHc--CCcEEEEeccccCcCHHHHHH
Confidence 986421111111100 00000 000011111111 234678999999999999995
No 130
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.49 E-value=7.5e-14 Score=114.08 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=85.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
++.+++||++|++.++..|..++.+++++|+|+|+++ ..+++....++..+++.....+.|++|++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS----------RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence 3567899999999999999999999999999999998 678888999999998765556789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++ .+. ...+........+.+..+||+++.||.++|..
T Consensus 118 l~~~~----~~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 118 LHTQR----QVS-------------TEEGKELAESWGAAFLESSARENENVEEAFEL 157 (180)
T ss_pred hhhcC----ccC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 86421 000 00111111123467889999999999999964
No 131
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=9.3e-14 Score=112.27 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=79.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.++++++||++|++.++..|..++.+++++|+|+|+++ ..++......|...+.... .++|++|++||+
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~ 113 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR----------PSTLERIRTKWLPLIRRLG-VKVPIILVGNKS 113 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence 45789999999999999999999999999999999998 5666665443333333222 379999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+...+... .+.. ....+.+.+.. ...+.+|||++|.||+++|..
T Consensus 114 Dl~~~~~~~-~~~~-----------~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 114 DLRDGSSQA-GLEE-----------EMLPIMNEFRE-IETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred hcccccchh-HHHH-----------HHHHHHHHHhc-ccEEEEeccccccCHHHHHHH
Confidence 996533211 0000 02233333322 125779999999999999974
No 132
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.48 E-value=1.4e-13 Score=110.10 Aligned_cols=111 Identities=9% Similarity=0.090 Sum_probs=83.8
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.+...+..++++++++++|+|+++ ..++.....++..+.......+.|+++++||+
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~ 115 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDNVPLLLVGNKC 115 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcc
Confidence 45779999999999999999999999999999999987 66777777777777765434579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ..-.........+.++++||++|+||.++|..
T Consensus 116 D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 116 DLEDKRQVS-----------------SEEAANLARQWGVPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred ccccccccC-----------------HHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHH
Confidence 986521000 11111111123356789999999999999964
No 133
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.48 E-value=1.7e-13 Score=108.29 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=88.7
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|.|.......+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ .+++.....|+..+.
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~ 99 (159)
T cd00154 30 KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN----------RESFENLDKWLKELK 99 (159)
T ss_pred CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555654443333 35789999999999999999999999999999999998 566777777777666
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..+.|+++++||+|+...+.. . .+.+.+......+.++++||+++.||.++|+
T Consensus 100 ~~~-~~~~p~ivv~nK~D~~~~~~~---------------~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 100 EYA-PENIPIILVGNKIDLEDQRQV---------------S--TEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred HhC-CCCCcEEEEEEcccccccccc---------------c--HHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 543 256899999999998621100 0 1222222222457789999999999999985
No 134
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=4.5e-14 Score=113.94 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=83.5
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.+++ +.+.+||++|++.++..+..++..++++|+|+|+++ ..++.....|+..+.
T Consensus 37 ~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~ 106 (169)
T cd04114 37 GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIE 106 (169)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 3555532 23344443 678999999999999999999999999999999987 455554444544432
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|+++++||+|+..++ .+. ..+.+.+.. ..+.++.+||++|.|++++|+.
T Consensus 107 ~~-~~~~~~~i~v~NK~D~~~~~----~i~--------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 107 QY-ANNKVITILVGNKIDLAERR----EVS--------------QQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred Hh-CCCCCeEEEEEECccccccc----ccC--------------HHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 21 12468999999999986421 110 111122222 3467889999999999999964
No 135
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=1.7e-13 Score=115.66 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=87.4
Q ss_pred ecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.......+ +++.+++||++|++.++.+|..|+.+++++|+|+|+++ ..++.....|+..+.
T Consensus 39 ~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~ 108 (215)
T PTZ00132 39 IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS----------RITYKNVPNWHRDIV 108 (215)
T ss_pred CCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555654443333 46889999999999999999999999999999999998 677777777777665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ..+.|+++++||+|+....... . ...+. ....+.++++||++|.||+++|.
T Consensus 109 ~~--~~~~~i~lv~nK~Dl~~~~~~~----~-----------~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~ 161 (215)
T PTZ00132 109 RV--CENIPIVLVGNKVDVKDRQVKA----R-----------QITFH----RKKNLQYYDISAKSNYNFEKPFL 161 (215)
T ss_pred Hh--CCCCCEEEEEECccCccccCCH----H-----------HHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence 43 3578999999999985321100 0 01111 12456788999999999999995
No 136
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.43 E-value=5e-13 Score=106.30 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=84.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.+...+..++++++++|+|+|+++ ..++.+...++..+.+......+|+++++||+|
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD----------RESFEEIKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 4778999999999999999999999999999999998 677788888888887654435799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+...+- .. .+.+........+.+..+||+++.||+++|.
T Consensus 116 ~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 116 LENERQ----VS-------------KEEGKALAKEWGCPFIETSAKDNINIDEVFK 154 (160)
T ss_pred ccccce----ec-------------HHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence 875210 00 1122222222336688999999999999995
No 137
>KOG0393|consensus
Probab=99.43 E-value=3.4e-13 Score=111.02 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=95.5
Q ss_pred cCCCCCCcCccccceeeecccceeEEEEee---eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCc
Q psy6623 70 LGAKEYQPTEQDILRTRVKTTGIVEVHFSF---KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146 (262)
Q Consensus 70 i~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~---~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~ 146 (262)
.+..+|.||.-|-+.+ .+.+ +.+.+.+|||+||+.|.++|...|.+++.+|.|+++++
T Consensus 28 ~fp~~yvPTVFdnys~----------~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~--------- 88 (198)
T KOG0393|consen 28 AFPEEYVPTVFDNYSA----------NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS--------- 88 (198)
T ss_pred cCcccccCeEEccceE----------EEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC---------
Confidence 4456788887654432 1223 34679999999999999999999999999999999998
Q ss_pred ccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeeccc
Q psy6623 147 TTNRMQES-LKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKW 224 (262)
Q Consensus 147 ~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~ts 224 (262)
..++++. .+|+-++..+ ..++|+||+|+|.||..+......+... ...+-..+ ...+.++. ....+.++|
T Consensus 89 -p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~---~~~~Vt~~~g~~lA~~i--ga~~y~EcS 160 (198)
T KOG0393|consen 89 -PESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQ---GLEPVTYEQGLELAKEI--GAVKYLECS 160 (198)
T ss_pred -hhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhc---cCCcccHHHHHHHHHHh--Ccceeeeeh
Confidence 7888874 4455544432 3689999999999997532111111110 00111111 22222222 235688999
Q ss_pred ccccceeeeeehhhH
Q psy6623 225 FTDTSIILFLNKKDL 239 (262)
Q Consensus 225 A~d~~~I~~~f~~~l 239 (262)
|++..|++++|+..+
T Consensus 161 a~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAI 175 (198)
T ss_pred hhhhCCcHHHHHHHH
Confidence 999999999999743
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.41 E-value=3.9e-13 Score=109.53 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=74.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+++.+++|||+|++.++..|..++++++++|+|+|+++ .... +.+..+..... .++|+++++||+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~~~-~~~~~~~~~~~----~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ----------GVEA-QTLANFYLALE----NNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCC----------CccH-hhHHHHHHHHH----cCCCEEEEEECC
Confidence 45778999999999999999999999999999999986 2221 22233333332 368999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+....... . .+.+.+.+.-....++.+||++|+||+++|+ +|...+
T Consensus 130 Dl~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 176 (179)
T cd01890 130 DLPSADPER--V--------------KQQIEDVLGLDPSEAILVSAKTGLGVEDLLE--AIVERI 176 (179)
T ss_pred CCCcCCHHH--H--------------HHHHHHHhCCCcccEEEeeccCCCCHHHHHH--HHHhhC
Confidence 985321000 0 1112221111112378999999999999995 454443
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.39 E-value=8.7e-13 Score=105.43 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=78.0
Q ss_pred ccceeEEEEeee-ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 89 TTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 89 T~Gi~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
|++.....+.+. +..+++|||+|++.+......++++++++|+|+|+++ ....++...+..+.. .
T Consensus 37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~~~---~ 102 (164)
T cd04171 37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEILEL---L 102 (164)
T ss_pred eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHHHH---h
Confidence 444444555555 7889999999999998888888999999999999875 122233333222211 1
Q ss_pred CCCeEEEEeeCCchhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeeh
Q psy6623 168 TDTSIILFLNKKDLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...|+++++||+|+..+. .... .+.+.+.+.. ..+.++++||++|+||+++|+
T Consensus 103 ~~~~~ilv~NK~Dl~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 103 GIKRGLVVLTKADLVDEDWLELV----------------EEEIRELLAGTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred CCCcEEEEEECccccCHHHHHHH----------------HHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHH
Confidence 224899999999996531 0000 1122222222 346788999999999999985
No 140
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.39 E-value=1.8e-12 Score=104.51 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.+...+..+++.++++++|+|+++ ..++.+....|...+... ..+.|+++++||+
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 114 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS----------PSSFENVKTKWIPEIRHY-CPNVPIILVGTKI 114 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEEccH
Confidence 35679999999999998888899999999999999997 566766665444433322 2379999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-....+ . .+..........+......+ .++++||++|+||.++|..
T Consensus 115 Dl~~~~~~~~~~-~-----~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (171)
T cd00157 115 DLRDDENTLKKL-E-----KGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEE 167 (171)
T ss_pred Hhhhchhhhhhc-c-----cCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHH
Confidence 997643211111 0 00000001111111112333 7899999999999999953
No 141
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.37 E-value=1.1e-12 Score=110.43 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=85.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+++.+|||+||+.++.+|..|+.+++++++|+|.++ ..++.+....|...+......+.|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 5779999999999999999999999999999999997 577777777776666543335799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhhccceeeccccc--ccceeeeeehhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKLFDSICNNKWFT--DTSIILFLNKKD 238 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~~~~~~~~tsA~--d~~~I~~~f~~~ 238 (262)
++.+......+...+. ...... .......-..... +..+||+ .+.+|..+|...
T Consensus 123 l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~ 180 (219)
T COG1100 123 LFDEQSSSEEILNQLN---REVVLLVLAPKAVLPEVANPA-LLETSAKSLTGPNVNELFKEL 180 (219)
T ss_pred cccchhHHHHHHhhhh---cCcchhhhHhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHH
Confidence 9876433222111100 000000 1111111011223 7789999 999999999873
No 142
>KOG0077|consensus
Probab=99.36 E-value=4e-13 Score=106.22 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=97.5
Q ss_pred EEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
.+.+.+++++++.+|.||+..-|+.|..||-.+++++|.+|..| .+|+.|++..++.++....+.++|++
T Consensus 56 SE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~la~vp~l 125 (193)
T KOG0077|consen 56 SEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDESLATVPFL 125 (193)
T ss_pred hHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHHHhcCcce
Confidence 36678899999999999999999999999999999999999998 89999999999999998888999999
Q ss_pred EEeeCCchhhhhhccCCCccc--CCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTIC--FPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~--fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
+++||+|.+... ...+++-. .-.+.|... .-.+.--..|++-.+.+|...+.+--+.| .||.+-
T Consensus 126 ilgnKId~p~a~-se~~l~~~l~l~~~t~~~~---~v~~~~~~~rp~evfmcsi~~~~gy~e~f--kwl~qy 191 (193)
T KOG0077|consen 126 ILGNKIDIPYAA-SEDELRFHLGLSNFTTGKG---KVNLTDSNVRPLEVFMCSIVRKMGYGEGF--KWLSQY 191 (193)
T ss_pred eecccccCCCcc-cHHHHHHHHHHHHHhcccc---cccccCCCCCeEEEEEEEEEccCccceee--eehhhh
Confidence 999999997632 11111100 000000000 00000000166777788888888877777 566654
No 143
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.36 E-value=3.2e-12 Score=105.53 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=78.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH-HHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~-~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.+... |+..+... ..++|++|++||+
T Consensus 48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~----------~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~ 115 (187)
T cd04129 48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT----------PDSLENVRTKWIEEVRRY--CPNVPVILVGLKK 115 (187)
T ss_pred EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeCh
Confidence 3678999999999998888888999999999999987 566766654 44444432 2469999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......... ..+. ...+...+.+.+ ....+++|||++|.||+++|..
T Consensus 116 Dl~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 116 DLRQDAVAKEEYRT--QRFV--PIQQGKRVAKEI--GAKKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred hhhhCccccccccc--CCcC--CHHHHHHHHHHh--CCcEEEEccCCCCCCHHHHHHH
Confidence 98543211110000 0000 000011111211 2245789999999999999964
No 144
>KOG4252|consensus
Probab=99.34 E-value=2e-13 Score=109.19 Aligned_cols=135 Identities=12% Similarity=0.176 Sum_probs=98.8
Q ss_pred ccccCCCCCCcCccccceeeecccceeEE--EEe--eeccceeeeecCCccccchhhhccccCCCEEEEeeecccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEV--HFS--FKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~--~~~--~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~ 142 (262)
|+|++..-|.. .+..|+|+... .+. ..++.+.+||+|||+.+..+...||+|+++.++|++-+|
T Consensus 37 iqryCkgifTk-------dykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD----- 104 (246)
T KOG4252|consen 37 IQRYCKGIFTK-------DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD----- 104 (246)
T ss_pred HHHHhcccccc-------ccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc-----
Confidence 56666544432 22567776532 222 356888999999999999999999999999999999999
Q ss_pred ccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeec
Q psy6623 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNN 222 (262)
Q Consensus 143 ~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ 222 (262)
..+++..++|.+.+.+. ...+|.+++-||+||.+....... ..+...+......+-
T Consensus 105 -----r~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~-----------------evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 105 -----RYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKG-----------------EVEGLAKKLHKRLYR 160 (246)
T ss_pred -----HHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchH-----------------HHHHHHHHhhhhhhh
Confidence 89999999999999864 468999999999999874322211 111111112233556
Q ss_pred ccccccceeeeeehh
Q psy6623 223 KWFTDTSIILFLNKK 237 (262)
Q Consensus 223 tsA~d~~~I~~~f~~ 237 (262)
||++..-||..+|..
T Consensus 161 tSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 161 TSVKEDFNVMHVFAY 175 (246)
T ss_pred hhhhhhhhhHHHHHH
Confidence 999999999999974
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.33 E-value=4.6e-12 Score=105.16 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=75.6
Q ss_pred EEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
...+..++..+++|||+|++.++..|..++++++++|+|+|+++ ........++..... .++|++
T Consensus 57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~-----------~~~~~~~~~~~~~~~----~~~p~i 121 (194)
T cd01891 57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALE----LGLKPI 121 (194)
T ss_pred eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCCEE
Confidence 34456678899999999999999999999999999999999986 122333333444332 368999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-------hhccceeecccccccceeeee
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-------KLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-------~~~~~~~~~tsA~d~~~I~~~ 234 (262)
|++||+|+..++.... .+-+.+.+ ....+.+.++||++|.|+.+.
T Consensus 122 iv~NK~Dl~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 122 VVINKIDRPDARPEEV----------------VDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEEECCCCCCCCHHHH----------------HHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 9999999864221100 11111111 112466889999999999665
No 146
>KOG0096|consensus
Probab=99.31 E-value=2.3e-12 Score=104.06 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=100.3
Q ss_pred eeecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.+.+|+|+......+ +.++|..|||+||+.+-.+...||-..++.|+++|++. ...+..+-.|.+.
T Consensus 38 ~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts----------r~t~~n~~rwhrd 107 (216)
T KOG0096|consen 38 TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS----------RFTYKNVPRWHRD 107 (216)
T ss_pred cccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee----------hhhhhcchHHHHH
Confidence 346788887666555 34899999999999999999999999999999999998 4455555566666
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHH
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
.+.. ..++||+++|||.|....+....++ .|.+. +.+.+++.||+..-|....| -||
T Consensus 108 ~~rv--~~NiPiv~cGNKvDi~~r~~k~k~v---------------~~~rk----knl~y~~iSaksn~NfekPF--l~L 164 (216)
T KOG0096|consen 108 LVRV--RENIPIVLCGNKVDIKARKVKAKPV---------------SFHRK----KNLQYYEISAKSNYNFERPF--LWL 164 (216)
T ss_pred HHHH--hcCCCeeeeccceeccccccccccc---------------eeeec----ccceeEEeecccccccccch--HHH
Confidence 6543 2469999999999997755343332 12222 56888999999999999999 789
Q ss_pred HhhccCCC
Q psy6623 241 EEKIKKSP 248 (262)
Q Consensus 241 ~~~i~~~~ 248 (262)
..++...+
T Consensus 165 arKl~G~p 172 (216)
T KOG0096|consen 165 ARKLTGDP 172 (216)
T ss_pred hhhhcCCC
Confidence 98887543
No 147
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.27 E-value=6.8e-12 Score=101.04 Aligned_cols=119 Identities=23% Similarity=0.234 Sum_probs=76.1
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhh----------ccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWI----------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~----------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+|.++....+..+++++++|||+|+.. +..|. .....++++|+|+|.++.. ..++.+...+
T Consensus 33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~--------~~~~~~~~~~ 103 (168)
T cd01897 33 TTKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETC--------GYSLEEQLSL 103 (168)
T ss_pred cccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCccc--------ccchHHHHHH
Confidence 456666666666788999999999842 12221 1112368999999998721 1134555566
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..+... ..+.|++|++||+|+....- +. ..........+.+++|||++|+||+++|+
T Consensus 104 ~~~l~~~--~~~~pvilv~NK~Dl~~~~~----~~---------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 104 FEEIKPL--FKNKPVIVVLNKIDLLTFED----LS---------------EIEEEEELEGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred HHHHHhh--cCcCCeEEEEEccccCchhh----HH---------------HHHHhhhhccCceEEEEecccCCHHHHHH
Confidence 6665432 35799999999999964211 00 01111111446788999999999999995
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.26 E-value=6.1e-12 Score=101.12 Aligned_cols=109 Identities=13% Similarity=-0.030 Sum_probs=72.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+|||+|++.++..|..+++.++++++|+|.++.+ ..+....+..+.. .++|+++++||+|
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~D 113 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKID 113 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEcee
Confidence 678999999999999999999999999999999998721 2223333333322 3689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHh--hhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESL--KLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f--~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+....... +...+ ..+..... ..+.+.++.+||++|+||.++|+
T Consensus 114 l~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 114 KPNANPER--VKNEL----------SELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred cccccHHH--HHHHH----------HHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence 86321000 00000 00000000 01346788999999999999995
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.23 E-value=3.3e-11 Score=100.34 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=71.5
Q ss_pred ceeeeecCC-----------ccccchhhhcccc-C---CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 103 NFKLFDVGG-----------QRSERKKWIHCFE-D---VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 103 ~~~i~D~~G-----------q~~~r~~w~~~f~-~---~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.+.+|||+| +++++..|..|++ + ++++++|+|.+++.+....-.....+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 689999999 7889999988875 3 56888888887643221000000111122233333222
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccc--eeecccccccceeeeeehhhHHH
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDS--ICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~--~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.++|++|++||+|+..++ . .. ...+.+.+.. +.+ .++.|||++| ||+++| .+|.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~-~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~--~~l~ 188 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR-D-EV---------------LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELK--EAIR 188 (201)
T ss_pred cCCCeEEEEECccccCcH-H-HH---------------HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHH--HHHH
Confidence 368999999999986432 0 00 1111221111 111 3689999999 999999 4566
Q ss_pred hhccCCC
Q psy6623 242 EKIKKSP 248 (262)
Q Consensus 242 ~~i~~~~ 248 (262)
..+....
T Consensus 189 ~~~~~~~ 195 (201)
T PRK04213 189 KRLHEAK 195 (201)
T ss_pred HhhcCcc
Confidence 6655433
No 150
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.22 E-value=2.2e-11 Score=102.15 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=62.4
Q ss_pred ccceeeeecCCccccchhhhccccCC-CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC--CCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDV-TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW--FTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~-~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~--~~~~piil~~N 177 (262)
+..+.+||++|+.++|..|..+++++ +++|||+|.++. .+++.++..++..++.... ..++|++|++|
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~~~~pvliv~N 117 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVKNKIPVLIACN 117 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhccCCCCEEEEec
Confidence 67899999999999999999999998 999999999982 1577787778777765432 25799999999
Q ss_pred CCchhh
Q psy6623 178 KKDLFE 183 (262)
Q Consensus 178 K~Dl~~ 183 (262)
|+|++.
T Consensus 118 K~Dl~~ 123 (203)
T cd04105 118 KQDLFT 123 (203)
T ss_pred chhhcc
Confidence 999875
No 151
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.21 E-value=4.5e-11 Score=97.71 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=80.5
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+...+..+.+||++|+..++..|..++++++++|+|+|.++. . .......+..... .+.|+
T Consensus 53 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~-~~~~~~~~~~~~~----~~~~i 117 (189)
T cd00881 53 GVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG----------V-QPQTREHLRIARE----GGLPI 117 (189)
T ss_pred ceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC----------C-cHHHHHHHHHHHH----CCCCe
Confidence 3444555678899999999999999999999999999999998761 1 1222233333322 46899
Q ss_pred EEEeeCCchhhh-hhccCCCcccCCCCCCCCcchhHHHHHHh--------------hhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEE-KIKKSPLTICFPEYAGKRPGERNRMQESL--------------KLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~-kl~~~~l~~~fp~~~g~~~~~~~~i~~~f--------------~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++++||+|+..+ ..... .+.+.+.+ ......++++||++|.||.++|+
T Consensus 118 ~iv~nK~D~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~- 180 (189)
T cd00881 118 IVAINKIDRVGEEDLEEV----------------LREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLE- 180 (189)
T ss_pred EEEEECCCCcchhcHHHH----------------HHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHH-
Confidence 999999998741 11000 11222211 11346788999999999999994
Q ss_pred hHHHhhc
Q psy6623 238 DLFEEKI 244 (262)
Q Consensus 238 ~lL~~~i 244 (262)
+|...+
T Consensus 181 -~l~~~l 186 (189)
T cd00881 181 -AIVEHL 186 (189)
T ss_pred -HHHhhC
Confidence 555554
No 152
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.19 E-value=1.8e-11 Score=98.67 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred Eeeecc-ceeeeecCCcc----ccchhhhccc---cCCCEEEEeeeccccccccccCccc-ccHHHHHHHHHHHHhC-CC
Q psy6623 97 FSFKNL-NFKLFDVGGQR----SERKKWIHCF---EDVTAIIFCVAMSEYDQVLHEDETT-NRMQESLKLFDSICNN-KW 166 (262)
Q Consensus 97 ~~~~~~-~~~i~D~~Gq~----~~r~~w~~~f---~~~~~iIfv~dls~~d~~~~e~~~~-~~l~e~~~~~~~i~~~-~~ 166 (262)
+.+++. .+.+|||+|+. ..+.++..++ ++++++|+|+|+++ . +.+.....+.+.+... +.
T Consensus 42 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~~~~~~~~~~~~~l~~~~~~ 111 (170)
T cd01898 42 VRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSG----------DDDPVEDYKTIRNELELYNPE 111 (170)
T ss_pred EEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCC----------CCCHHHHHHHHHHHHHHhCcc
Confidence 344554 89999999974 2223334443 46999999999997 3 3333333333333322 22
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|+++++||+|+...... ...+...... ....++.+||+++.||.++|+
T Consensus 112 ~~~~p~ivv~NK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 112 LLEKPRIVVLNKIDLLDEEEL------------------FELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred ccccccEEEEEchhcCCchhh------------------HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence 357899999999998542110 1112111222 246678999999999999995
No 153
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.17 E-value=4.1e-11 Score=94.03 Aligned_cols=120 Identities=20% Similarity=0.088 Sum_probs=79.7
Q ss_pred cccceeEEE--Eeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHH
Q psy6623 88 KTTGIVEVH--FSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSIC 162 (262)
Q Consensus 88 pT~Gi~~~~--~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~ 162 (262)
+|++..... +..++ +.+.+||++|+..++.+|..+++.+.++++++|++.+ ...+.+.. .+...+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~---------v~~~~~~~~~~~~~~~ 102 (161)
T TIGR00231 32 PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL---------VLDVEEILEKQTKEII 102 (161)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee---------ehhhhhHhHHHHHHHH
Confidence 444443333 55566 7889999999999999999999999999999999873 13334443 2333332
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+. ...+.|+++++||+|+....+. ......+.. ....++++||++|.||.++|+
T Consensus 103 ~~-~~~~~p~ivv~nK~D~~~~~~~-------------------~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 103 HH-AESNVPIILVGNKIDLRDAKLK-------------------THVAFLFAKLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred Hh-cccCCcEEEEEEcccCCcchhh-------------------HHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence 22 1127899999999998653210 011111111 223478999999999999984
No 154
>KOG3883|consensus
Probab=99.15 E-value=8.3e-11 Score=92.01 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=102.2
Q ss_pred CCCCCCcCccccceeeecc-cceeEEEEeeeccceeeeecCCcccc-chhhhccccCCCEEEEeeeccccccccccCccc
Q psy6623 71 GAKEYQPTEQDILRTRVKT-TGIVEVHFSFKNLNFKLFDVGGQRSE-RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT 148 (262)
Q Consensus 71 ~~~~y~pt~~Dil~~~~pT-~Gi~~~~~~~~~~~~~i~D~~Gq~~~-r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~ 148 (262)
...++.||++|++.....| .|.. -.+.++||+|-..+ ..+-.|||.-+++.++|+|..++.. .
T Consensus 36 ~~~e~~pTiEDiY~~svet~rgar--------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS-------f 100 (198)
T KOG3883|consen 36 PGTELHPTIEDIYVASVETDRGAR--------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES-------F 100 (198)
T ss_pred CCCccccchhhheeEeeecCCChh--------heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH-------H
Confidence 3457899999998765544 2322 35889999998777 6777899999999999999998321 2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccc
Q psy6623 149 NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDT 228 (262)
Q Consensus 149 ~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~ 228 (262)
++++..+++++ .++.-+.+||++++||+|+.+.+-....... .|. ..-.+..++++|+|.
T Consensus 101 ~rv~llKk~Id---k~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~-------------~Wa----~rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 101 QRVELLKKEID---KHKDKKEVPIVVLANKRDRAEPREVDMDVAQ-------------IWA----KREKVKLWEVTAMDR 160 (198)
T ss_pred HHHHHHHHHHh---hccccccccEEEEechhhcccchhcCHHHHH-------------HHH----hhhheeEEEEEeccc
Confidence 33333333333 3555678999999999998543222211111 111 113467788999999
Q ss_pred ceeeeeehhhHHHhhccCCCccccCCCC
Q psy6623 229 SIILFLNKKDLFEEKIKKSPLTICFPEY 256 (262)
Q Consensus 229 ~~I~~~f~~~lL~~~i~~~~l~~~~~~~ 256 (262)
..+.+-| ..|..++....-.+-||-.
T Consensus 161 ~sL~epf--~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 161 PSLYEPF--TYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred hhhhhHH--HHHHHhccCCcccccCcch
Confidence 9999999 6788888766656667644
No 155
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.14 E-value=1.4e-10 Score=104.36 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=74.2
Q ss_pred EEee-eccceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CC
Q psy6623 96 HFSF-KNLNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KW 166 (262)
Q Consensus 96 ~~~~-~~~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~ 166 (262)
.+.+ ++.++.+||++|.-. ....|..+++.++++|+|+|+++ .+++++...|..++... +.
T Consensus 199 ~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~----------~~s~e~~~~~~~EL~~~~~~ 268 (335)
T PRK12299 199 VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA----------VDPVEDYKTIRNELEKYSPE 268 (335)
T ss_pred EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC----------CCCHHHHHHHHHHHHHhhhh
Confidence 3444 456799999999742 33345556778999999999997 33344444444444332 33
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.+.|++|++||+|+..+.... ...+........+.++++||++++||+++|+.
T Consensus 269 L~~kp~IIV~NKiDL~~~~~~~-----------------~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~ 322 (335)
T PRK12299 269 LADKPRILVLNKIDLLDEEEER-----------------EKRAALELAALGGPVFLISAVTGEGLDELLRA 322 (335)
T ss_pred cccCCeEEEEECcccCCchhHH-----------------HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 4578999999999986422100 00111111123366889999999999999953
No 156
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.14 E-value=1.5e-10 Score=91.98 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=75.7
Q ss_pred ccceeEEEEeeeccceeeeecCCccccch------hhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERK------KWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|+......+.+++..+.+|||+|++.+.. ++..++. +++++|+|+|.++ ... ...++..
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~ 96 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQ 96 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHH
Confidence 44455556677778899999999987764 4677775 9999999999886 222 2233333
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+.. .++|+++++||+|+......... ...+... ..+.++++||.++.|+.++|.
T Consensus 97 ~~~----~~~~~iiv~NK~Dl~~~~~~~~~---------------~~~~~~~---~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 97 LLE----LGLPVVVALNMIDEAEKRGIKID---------------LDKLSEL---LGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred HHH----cCCCEEEEEehhhhcccccchhh---------------HHHHHHh---hCCCeEEEEccCCCCHHHHHH
Confidence 332 26899999999998642110000 1111111 235678999999999999985
No 157
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.13 E-value=1.5e-10 Score=89.64 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=78.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+||++|+..+...|..++++++++|+|+|+++ ...+.....++..........++|+++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD----------RESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 6789999999999999999999999999999999997 455555555433333334456799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+....-... ............+.++.+||+++.++.++++
T Consensus 114 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 114 LPEERVVSE----------------EELAEQLAKELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred cccccchHH----------------HHHHHHHHhhcCCcEEEEecCCCCChHHHHH
Confidence 865211100 0001111122457789999999999998885
No 158
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=1.8e-10 Score=93.00 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=89.5
Q ss_pred eeecccceeEEEEeeec-cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 85 TRVKTTGIVEVHFSFKN-LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.|..|+++......+.+ ..+.+++|+||++++.+|.-+++++.++|+++|.+. .... ++...+.-+..
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~----------~~~~-~a~~ii~f~~~ 118 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----------PITF-HAEEIIDFLTS 118 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCC----------Ccch-HHHHHHHHHhh
Confidence 34678888888888866 899999999999999999999999999999999997 4444 55555444432
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .+|++|+.||+||+... .. +-|++.+.. ..+....++|+++++..+..+.
T Consensus 119 ~~---~ip~vVa~NK~DL~~a~-pp------------------e~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ 172 (187)
T COG2229 119 RN---PIPVVVAINKQDLFDAL-PP------------------EKIREALKLELLSVPVIEIDATEGEGARDQLDV 172 (187)
T ss_pred cc---CCCEEEEeeccccCCCC-CH------------------HHHHHHHHhccCCCceeeeecccchhHHHHHHH
Confidence 21 29999999999998732 11 112222211 3577889999999999888864
No 159
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.12 E-value=2e-10 Score=95.94 Aligned_cols=115 Identities=16% Similarity=0.086 Sum_probs=71.0
Q ss_pred cccceeEEEEeeec-cceeeeecCCccc---------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKN-LNFKLFDVGGQRS---------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 88 pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~---------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+|+......+.+.+ ..+.+||++|+.. ++..+ ..+.+++++++|+|+++ ....... ..
T Consensus 74 ~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~----------~~~~~~~-~~ 141 (204)
T cd01878 74 ATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASD----------PDYEEQI-ET 141 (204)
T ss_pred eeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCC----------CChhhHH-HH
Confidence 34444444445544 3899999999832 23333 24678999999999987 3333222 22
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++..-...+.|+++|+||+|+..+.... ..+......++++||+++.||.++|+
T Consensus 142 ~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~----------------------~~~~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 142 VEKVLKELGAEDIPMILVLNKIDLLDDEELE----------------------ERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred HHHHHHHcCcCCCCEEEEEEccccCChHHHH----------------------HHhhcCCCceEEEEcCCCCCHHHHHH
Confidence 2222222223468999999999986532111 01111234578999999999999995
No 160
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.11 E-value=3.2e-10 Score=109.20 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=73.2
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+.+++|||+|+..++..|..++++++++|+|+|.++ .... +....+..... .+.|+++++||+|+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~----------g~~~-qt~~~~~~~~~----~~ipiIiViNKiDl 134 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQ----------GIEA-QTLANVYLALE----NDLEIIPVINKIDL 134 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCC----------CCCH-hHHHHHHHHHH----cCCCEEEEEECcCC
Confidence 789999999999999999999999999999999987 2222 22223333332 35799999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....... . .+-+.+.+.-....++++||++|.||.++|+ .+...+
T Consensus 135 ~~~~~~~--~--------------~~el~~~lg~~~~~vi~vSAktG~GI~~Lle--~I~~~l 179 (595)
T TIGR01393 135 PSADPER--V--------------KKEIEEVIGLDASEAILASAKTGIGIEEILE--AIVKRV 179 (595)
T ss_pred CccCHHH--H--------------HHHHHHHhCCCcceEEEeeccCCCCHHHHHH--HHHHhC
Confidence 5321000 0 1112221111112367899999999999995 344444
No 161
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.09 E-value=2.5e-10 Score=92.31 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=74.0
Q ss_pred EEEeee-ccceeeeecCCcc----ccchhh---hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 95 VHFSFK-NLNFKLFDVGGQR----SERKKW---IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 95 ~~~~~~-~~~~~i~D~~Gq~----~~r~~w---~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..+.++ +..+.+||++|+. ..+.++ ..++++++++++|+|.++.+.. ...+.+.+...+...+.....
T Consensus 36 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 111 (176)
T cd01881 36 GVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDL 111 (176)
T ss_pred eEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhh
Confidence 345566 7889999999973 223333 3457889999999999872100 000344444445445543221
Q ss_pred ------CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHH-HHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 ------FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNR-MQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ------~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~-i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|+++++||+|+....... .. ...........++.+||+++.|+.++++
T Consensus 112 ~~~~~~~~~~p~ivv~NK~Dl~~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 112 ETILGLLTAKPVIYVLNKIDLDDAEELE------------------EELVRELALEEGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred hhHHHHHhhCCeEEEEEchhcCchhHHH------------------HHHHHHHhcCCCCCEEEEehhhhcCHHHHHH
Confidence 2478999999999986432110 00 0111112345688999999999999986
No 162
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.09 E-value=2.3e-10 Score=96.95 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=77.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++.++.+||++|++.+...+....+.++++|+|+|.++-.. +. ......+....+... . .
T Consensus 62 g~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~~-~~~~~~~~~~~~~~~-~--~ 134 (219)
T cd01883 62 GVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---EA-GFEKGGQTREHALLA-R--T 134 (219)
T ss_pred ccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---cc-ccccccchHHHHHHH-H--H
Confidence 445555666778889999999999999888888888889999999999986210 00 001111222222222 1 2
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIIL 232 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~ 232 (262)
....|+++++||+|+.........+.. ..+.+...+.. +.+.++++||++|+||.
T Consensus 135 ~~~~~iiivvNK~Dl~~~~~~~~~~~~-----------i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 135 LGVKQLIVAVNKMDDVTVNWSEERYDE-----------IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cCCCeEEEEEEccccccccccHHHHHH-----------HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 234689999999999731000000000 01122211211 35779999999999998
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.08 E-value=1.9e-10 Score=96.42 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=74.1
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+|||+|++.+...+.....+++++|+|+|+++ .....+....+..+.. ....|++|++||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~----------~~~~~~t~~~l~~~~~---~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE----------PCPQPQTSEHLAALEI---MGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC----------CCCCcchHHHHHHHHH---cCCCcEEEEEEchhc
Confidence 578999999999998888888899999999999985 1111122222222211 123579999999998
Q ss_pred hhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 182 FEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 182 ~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
..+. .... .+.+.+.+.. ..+.++++||++|+||.++| .++...+..
T Consensus 150 ~~~~~~~~~----------------~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~--~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQALEN----------------YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLL--EYIVKKIPT 200 (203)
T ss_pred cCHHHHHHH----------------HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHH--HHHHHhCCC
Confidence 6421 1000 1222222221 24567889999999999999 456665544
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.06 E-value=3.4e-10 Score=93.78 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=66.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+|||+|+..+.+......+.++++|+|+|.++. ..... .+.+. +... .+.|+++++||+|
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~----------~~~~~-~~~~~-~~~~---~~~~~iiv~NK~D 131 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKG----------IQTQT-AECLV-IGEI---LCKKLIVVLNKID 131 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC----------ccHHH-HHHHH-HHHH---cCCCEEEEEECcc
Confidence 67899999999965422222223567899999998861 11111 11111 1111 2579999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+..+......+... .+.+...+. ...+.++.+||++|+||.++++ .|..++.
T Consensus 132 l~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~--~l~~~~~ 186 (192)
T cd01889 132 LIPEEERERKIEKM-----------KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGK--DLNNLIV 186 (192)
T ss_pred cCCHHHHHHHHHHH-----------HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHH--HHHhccc
Confidence 86321000000000 122222221 1346688999999999999884 4655554
No 165
>KOG1673|consensus
Probab=99.05 E-value=2e-10 Score=90.03 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred eeecccceeEEEE--eee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHF--SFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 85 ~~~pT~Gi~~~~~--~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.+..|.|++.... .++ .+.+.+||+|||++++.+.+.-..++-+|+|++|++. ...+...++|+++
T Consensus 48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~----------r~TLnSi~~WY~Q 117 (205)
T KOG1673|consen 48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR----------RSTLNSIKEWYRQ 117 (205)
T ss_pred HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc----------hHHHHHHHHHHHH
Confidence 4567888876544 444 4789999999999999999998999999999999998 6777888888887
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...- .+.+--+++|+|.|++-. +... +.-.-... +.|.+. -.-..+++||....||+.+|+.
T Consensus 118 Ar~~--NktAiPilvGTKyD~fi~-lp~e--------~Q~~I~~qar~YAk~----mnAsL~F~Sts~sINv~KIFK~ 180 (205)
T KOG1673|consen 118 ARGL--NKTAIPILVGTKYDLFID-LPPE--------LQETISRQARKYAKV----MNASLFFCSTSHSINVQKIFKI 180 (205)
T ss_pred Hhcc--CCccceEEeccchHhhhc-CCHH--------HHHHHHHHHHHHHHH----hCCcEEEeeccccccHHHHHHH
Confidence 7532 233334678999999752 1110 00000000 222221 2345778999999999999975
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.04 E-value=7e-10 Score=100.11 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred cccceeEEEEeeeccceeeeecCCccc-cchhh-------hccccCCCEEEEeeeccccccccccCcccccHHHHH-HHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRS-ERKKW-------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLF 158 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~-~r~~w-------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~ 158 (262)
+|.+.....+..++.++.+|||+|+.. +..+- ..++++++++|||+|.++ ++.+.. .++
T Consensus 86 tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~------------s~~~~~~~il 153 (339)
T PRK15494 86 TTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK------------SFDDITHNIL 153 (339)
T ss_pred CccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC------------CCCHHHHHHH
Confidence 444544455666788899999999843 22211 124789999999999664 122221 233
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 238 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~ 238 (262)
..+.. .+.|.+||+||+|+..+.+ .++ .+++.... ....++++||++|.||+++| .
T Consensus 154 ~~l~~----~~~p~IlViNKiDl~~~~~--~~~--------------~~~l~~~~--~~~~i~~iSAktg~gv~eL~--~ 209 (339)
T PRK15494 154 DKLRS----LNIVPIFLLNKIDIESKYL--NDI--------------KAFLTENH--PDSLLFPISALSGKNIDGLL--E 209 (339)
T ss_pred HHHHh----cCCCEEEEEEhhcCccccH--HHH--------------HHHHHhcC--CCcEEEEEeccCccCHHHHH--H
Confidence 33322 1356778999999854210 000 12222110 12457899999999999999 5
Q ss_pred HHHhhccCCCccccCC
Q psy6623 239 LFEEKIKKSPLTICFP 254 (262)
Q Consensus 239 lL~~~i~~~~l~~~~~ 254 (262)
+|...+..+ +-+||
T Consensus 210 ~L~~~l~~~--~~~~~ 223 (339)
T PRK15494 210 YITSKAKIS--PWLYA 223 (339)
T ss_pred HHHHhCCCC--CCCCC
Confidence 677766544 33444
No 167
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.03 E-value=3.7e-10 Score=102.27 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=72.9
Q ss_pred cccceeEEEEee-eccceeeeecCCc---------cccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 88 KTTGIVEVHFSF-KNLNFKLFDVGGQ---------RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 88 pT~Gi~~~~~~~-~~~~~~i~D~~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+|.......+.+ ++..+.+|||+|. +.+++.+. ++.+++++|+|+|.++ .....+ ...
T Consensus 222 tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~----------~~~~~~-~~~ 289 (351)
T TIGR03156 222 ATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASD----------PDREEQ-IEA 289 (351)
T ss_pred cccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CchHHH-HHH
Confidence 455555666666 5689999999998 33444433 5789999999999997 333222 222
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++..-...+.|+++|+||+|+.... . ...+.. ....++.+||++|.||+++++
T Consensus 290 ~~~~L~~l~~~~~piIlV~NK~Dl~~~~----~---------------v~~~~~----~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 290 VEKVLEELGAEDIPQLLVYNKIDLLDEP----R---------------IERLEE----GYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred HHHHHHHhccCCCCEEEEEEeecCCChH----h---------------HHHHHh----CCCCEEEEEccCCCCHHHHHH
Confidence 2233322223468999999999986421 0 000100 112357899999999999885
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.02 E-value=1.1e-09 Score=105.08 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=75.4
Q ss_pred EEEeeecc-ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 95 VHFSFKNL-NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 95 ~~~~~~~~-~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
..+.+++. .+.+|||+|++.|..+|..+++.++++|+|+|.++ ....++.+.+.... ..++|++
T Consensus 127 ~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiI 191 (587)
T TIGR00487 127 YHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPII 191 (587)
T ss_pred EEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEE
Confidence 34455443 89999999999999999999999999999999875 22334444443322 2468999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH------HHhhhccceeecccccccceeeeeehh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ------ESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~------~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+++||+|+...... .+ ...+. ..+. ..+.+.++||++|+||.++|+.
T Consensus 192 VviNKiDl~~~~~e--~v--------------~~~L~~~g~~~~~~~-~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 192 VAINKIDKPEANPD--RV--------------KQELSEYGLVPEDWG-GDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred EEEECcccccCCHH--HH--------------HHHHHHhhhhHHhcC-CCceEEEEECCCCCChHHHHHh
Confidence 99999998531100 00 11111 1110 2345788999999999999975
No 169
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.01 E-value=1.1e-09 Score=105.56 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=74.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
++.+++|||+|+..+...|..+++.++++|+|+|.++- .. .+....+..... .+.|+++|+||+|
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g----------v~-~qt~~~~~~~~~----~~lpiIvViNKiD 137 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG----------VE-AQTLANVYLALE----NDLEIIPVLNKID 137 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC----------CC-HHHHHHHHHHHH----CCCCEEEEEECCC
Confidence 57899999999999999999999999999999999861 11 122233333332 3679999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+....... . .+-+.+.+.-....++.+||++|.||.++++ ++...+
T Consensus 138 l~~a~~~~--v--------------~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~--~I~~~l 183 (600)
T PRK05433 138 LPAADPER--V--------------KQEIEDVIGIDASDAVLVSAKTGIGIEEVLE--AIVERI 183 (600)
T ss_pred CCcccHHH--H--------------HHHHHHHhCCCcceEEEEecCCCCCHHHHHH--HHHHhC
Confidence 85421100 0 1112221111112367899999999999995 344443
No 170
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.00 E-value=1.3e-09 Score=97.79 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=74.3
Q ss_pred ecccceeEEEEeeec-cceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKN-LNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
.|++|+ +.+.+ ..+.+||++|+.. ....|..+++.++++|+|+|+++.+. .+.+++...+.
T Consensus 193 ~p~ig~----v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~ 261 (329)
T TIGR02729 193 VPNLGV----VRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIR 261 (329)
T ss_pred CCEEEE----EEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHH
Confidence 455554 34444 7899999999842 23344455678999999999997310 12333333333
Q ss_pred HHHHh-CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 159 DSICN-NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 159 ~~i~~-~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++.. .+.+.+.|++|++||+|+..+... ..+ .+.+.+. ..+.++++||++++||+++++
T Consensus 262 ~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~-~~~--------------~~~l~~~---~~~~vi~iSAktg~GI~eL~~ 322 (329)
T TIGR02729 262 NELKKYSPELAEKPRIVVLNKIDLLDEEEL-AEL--------------LKELKKA---LGKPVFPISALTGEGLDELLY 322 (329)
T ss_pred HHHHHhhhhhccCCEEEEEeCccCCChHHH-HHH--------------HHHHHHH---cCCcEEEEEccCCcCHHHHHH
Confidence 33322 133457899999999998653210 000 1122211 235678899999999999995
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.99 E-value=1.1e-09 Score=103.17 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred EEEEeeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.....+++..+.+|||+|++. ++..+..++++++++|||+|.++ ..+..+ ..+. ..+..
T Consensus 78 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~----------~~s~~~-~~i~-~~l~~- 144 (472)
T PRK03003 78 SYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV----------GATATD-EAVA-RVLRR- 144 (472)
T ss_pred EEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHHH-HHHH-HHHHH-
Confidence 344556778899999999873 45567788999999999999987 211111 1222 22221
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++||+||+|+.... ... ..+....+ . ..+++||++|.||.++|+.
T Consensus 145 --~~~piilV~NK~Dl~~~~---~~~--------------~~~~~~g~---~-~~~~iSA~~g~gi~eL~~~ 193 (472)
T PRK03003 145 --SGKPVILAANKVDDERGE---ADA--------------AALWSLGL---G-EPHPVSALHGRGVGDLLDA 193 (472)
T ss_pred --cCCCEEEEEECccCCccc---hhh--------------HHHHhcCC---C-CeEEEEcCCCCCcHHHHHH
Confidence 368999999999985311 000 01111001 1 1357999999999999953
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.99 E-value=1.7e-09 Score=85.46 Aligned_cols=107 Identities=17% Similarity=0.110 Sum_probs=69.2
Q ss_pred eEEEEeeeccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
........+..+.+|||+|+..++. .+..++++++++|+|+|.++. ....+ ...++ .+..
T Consensus 36 ~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~-~~~~~-~~~~ 103 (157)
T cd01894 36 IYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG----------LTPAD-EEIAK-YLRK 103 (157)
T ss_pred eeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc----------CCccH-HHHHH-HHHh
Confidence 3444555678899999999988654 445678899999999998751 11111 12222 2221
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
.+.|+++++||+|+...... ...+..... .+.++||+++.||.++|+
T Consensus 104 ---~~~piiiv~nK~D~~~~~~~----------------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 104 ---SKKPVILVVNKVDNIKEEDE----------------------AAEFYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred ---cCCCEEEEEECcccCChHHH----------------------HHHHHhcCCCCeEEEecccCCCHHHHHH
Confidence 24899999999998653211 001111112 357899999999999995
No 173
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.97 E-value=8.6e-11 Score=92.18 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=59.0
Q ss_pred eeeecCCcc-----ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 105 KLFDVGGQR-----SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 105 ~i~D~~Gq~-----~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+|||+|+. .++.+.. .+++++++|+|+|+++- .++.. ..+ .... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~----------~s~~~-~~~-~~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP----------ESRFP-PGF-ASIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC----------CcCCC-hhH-HHhc------cCCeEEEEEee
Confidence 689999983 3444433 57999999999999983 22221 122 2221 23999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
|+..... .... ..++... ... .++++||++|+||+++|+
T Consensus 99 Dl~~~~~---~~~~-----------~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 99 DLAEADV---DIER-----------AKELLET----AGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred ccCCccc---CHHH-----------HHHHHHH----cCCCcEEEEecCCCCCHHHHHH
Confidence 9853110 0000 0122221 222 567899999999999985
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.97 E-value=1.3e-09 Score=101.13 Aligned_cols=114 Identities=14% Similarity=0.204 Sum_probs=74.3
Q ss_pred EEEeeeccceeeeecCCccccchhh-----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKW-----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+..++..+.+|||+|+++.+..+ ..+++.++++|+|+|.++ .-. .....++..+..
T Consensus 213 ~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~-~~~~~~~~~~~~ 281 (429)
T TIGR03594 213 IPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GIT-EQDLRIAGLILE 281 (429)
T ss_pred EEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH
Confidence 3455567789999999987766543 346789999999999986 222 223344444433
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+.........+ .+.+...+.. ..+.++++||++|.||.++|+.
T Consensus 282 ----~~~~iiiv~NK~Dl~~~~~~~~~~--------------~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~ 338 (429)
T TIGR03594 282 ----AGKALVIVVNKWDLVKDEKTREEF--------------KKELRRKLPFLDFAPIVFISALTGQGVDKLLDA 338 (429)
T ss_pred ----cCCcEEEEEECcccCCCHHHHHHH--------------HHHHHHhcccCCCCceEEEeCCCCCCHHHHHHH
Confidence 368999999999986211000000 2223222222 2356889999999999999975
No 175
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.97 E-value=6.3e-10 Score=84.56 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=57.4
Q ss_pred ceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH---HHHHHhCCCC
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL---FDSICNNKWF 167 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~---~~~i~~~~~~ 167 (262)
+............+.+||++|++.+...|...+.+++++|+|+|+++ ..+++.+..+ +..+-. ..
T Consensus 39 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~----------~~s~~~~~~~~~~l~~~~~--~~ 106 (119)
T PF08477_consen 39 GVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSD----------PESLEYLSQLLKWLKNIRK--RD 106 (119)
T ss_dssp EEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCG----------HHHHHHHHHHHHHHHHHHH--HS
T ss_pred EEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCC----------hHHHHHHHHHHHHHHHHHc--cC
Confidence 33333333344559999999999999988888999999999999998 5666665444 444432 23
Q ss_pred CCCeEEEEeeCCc
Q psy6623 168 TDTSIILFLNKKD 180 (262)
Q Consensus 168 ~~~piil~~NK~D 180 (262)
.++|++|++||.|
T Consensus 107 ~~~piilv~nK~D 119 (119)
T PF08477_consen 107 KNIPIILVGNKSD 119 (119)
T ss_dssp SCSEEEEEEE-TC
T ss_pred CCCCEEEEEeccC
Confidence 5699999999998
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.96 E-value=1.1e-09 Score=107.94 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=77.7
Q ss_pred EEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
..+.+++..++||||+|++.|..+|..+++.+|++|+|+|.++ ....++...+.... ..++|++|
T Consensus 330 ~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIV 394 (787)
T PRK05306 330 YQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIV 394 (787)
T ss_pred EEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEE
Confidence 3455667889999999999999999999999999999999876 23344444443322 24689999
Q ss_pred EeeCCchhhhhhc--cCCCc--ccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 175 FLNKKDLFEEKIK--KSPLT--ICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 175 ~~NK~Dl~~~kl~--~~~l~--~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++||+|+...... ...+. ..+|+-.| ..+.++++||++|.||.++|+.
T Consensus 395 viNKiDl~~a~~e~V~~eL~~~~~~~e~~g---------------~~vp~vpvSAktG~GI~eLle~ 446 (787)
T PRK05306 395 AINKIDKPGANPDRVKQELSEYGLVPEEWG---------------GDTIFVPVSAKTGEGIDELLEA 446 (787)
T ss_pred EEECccccccCHHHHHHHHHHhcccHHHhC---------------CCceEEEEeCCCCCCchHHHHh
Confidence 9999998642100 00010 01111001 2366889999999999999975
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.92 E-value=2.4e-09 Score=103.03 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=79.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+.+....+..++..+.+||++|++.+.+.+..++.+++++|+|+|.++ ..+.++.+.+.. +.. .
T Consensus 37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~-----------G~~~qT~ehl~i-l~~---l 101 (581)
T TIGR00475 37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE-----------GVMTQTGEHLAV-LDL---L 101 (581)
T ss_pred eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCcHHHHHHHHH-HHH---c
Confidence 4444455567777889999999999999999999999999999999986 122233333322 221 2
Q ss_pred CCe-EEEEeeCCchhhhh-hcc--CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTS-IILFLNKKDLFEEK-IKK--SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~~~k-l~~--~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++| ++|++||+|+.++. +.. ..+ .+++........+.++++||++|+||.+++..
T Consensus 102 gi~~iIVVlNK~Dlv~~~~~~~~~~ei--------------~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~ 160 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEEIKRTEMFM--------------KQILNSYIFLKNAKIFKTSAKTGQGIGELKKE 160 (581)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH--------------HHHHHHhCCCCCCcEEEEeCCCCCCchhHHHH
Confidence 466 99999999986422 100 000 11111110011466889999999999999864
No 178
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.90 E-value=2.3e-09 Score=100.95 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=71.8
Q ss_pred EEEeeeccceeeeecCCccc----------cchhh-hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRS----------ERKKW-IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~----------~r~~w-~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+.+++..+.+|||+|+++ ++.+. ..++++++++|+|+|.++ ..+.. .+.++..+..
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~-~~~~~~~~~~ 320 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQ-DQRVLSMVIE 320 (472)
T ss_pred EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH
Confidence 44566777889999999643 22222 236789999999999987 33333 2345555543
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..+.... .+ ...+...+.. ....+++|||++|.||.++|..
T Consensus 321 ----~~~piIiV~NK~Dl~~~~~~~-~~--------------~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~ 376 (472)
T PRK03003 321 ----AGRALVLAFNKWDLVDEDRRY-YL--------------EREIDRELAQVPWAPRVNISAKTGRAVDKLVPA 376 (472)
T ss_pred ----cCCCEEEEEECcccCChhHHH-HH--------------HHHHHHhcccCCCCCEEEEECCCCCCHHHHHHH
Confidence 368999999999996421000 00 1112222211 1234678999999999999986
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.90 E-value=6.8e-09 Score=85.75 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=82.1
Q ss_pred cccceeEEEEe--eeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 88 KTTGIVEVHFS--FKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 88 pT~Gi~~~~~~--~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
-|+......+. ..+..++++|++|+..+.+........+|++|+|+|..+ .-.....+.+..+..
T Consensus 54 ~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~-----------g~~~~~~~~l~~~~~-- 120 (188)
T PF00009_consen 54 ITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND-----------GIQPQTEEHLKILRE-- 120 (188)
T ss_dssp SSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT-----------BSTHHHHHHHHHHHH--
T ss_pred cccccccccccccccccceeecccccccceeecccceecccccceeeeeccc-----------ccccccccccccccc--
Confidence 34444555555 677899999999999998888888999999999999986 222344444544433
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh----hh---ccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL----KL---FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f----~~---~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+...++... .+-+...+ .. ..+.++++||++|.||..+++.
T Consensus 121 --~~~p~ivvlNK~D~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~ 181 (188)
T PF00009_consen 121 --LGIPIIVVLNKMDLIEKELEEI----------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEA 181 (188)
T ss_dssp --TT-SEEEEEETCTSSHHHHHHH----------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHH
T ss_pred --cccceEEeeeeccchhhhHHHH----------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHH
Confidence 3688999999999985432211 11222222 11 2467899999999999988853
No 180
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.90 E-value=1.9e-09 Score=100.21 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=76.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++..+.+||++|++.+.+....++.+++++|+|+|.++-+. .........+ .++. .
T Consensus 70 g~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~t~~~~-~~~~--~ 138 (426)
T TIGR00483 70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF--------EVQPQTREHA-FLAR--T 138 (426)
T ss_pred CceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc--------ccCCchHHHH-HHHH--H
Confidence 345555566677788999999999999887666667789999999999987210 0111111111 1121 1
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHH-hhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQES-LKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~-f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
....+++|++||+|+.+.. ...+... ..+ .+++... +....+.++++||++|.||.+.+.
T Consensus 139 ~~~~~iIVviNK~Dl~~~~--~~~~~~~--------~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 139 LGINQLIVAINKMDSVNYD--EEEFEAI--------KKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cCCCeEEEEEEChhccCcc--HHHHHHH--------HHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 2335899999999985310 0000000 000 1111110 111246788999999999998765
No 181
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.90 E-value=4.4e-09 Score=98.65 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=79.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccc----cc---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRS----ER---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~----~r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
+|+..+...+.+++..+.+||++|... .+ .....+++.++++|+|+|+++.+.- .+....+......+..
T Consensus 192 TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~ 268 (500)
T PRK12296 192 TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAA 268 (500)
T ss_pred ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHH
Confidence 455555556677788999999999632 11 1223356889999999999862100 0011223333333333
Q ss_pred HHhC-------CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeee
Q psy6623 161 ICNN-------KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 161 i~~~-------~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.... ..+.+.|++|++||+|+...+- + .+.+...+..+.+.++.+||++++||++
T Consensus 269 y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----l--------------~e~l~~~l~~~g~~Vf~ISA~tgeGLdE 330 (500)
T PRK12296 269 YAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----L--------------AEFVRPELEARGWPVFEVSAASREGLRE 330 (500)
T ss_pred hhhcccccchhhhhcCCCEEEEEECccchhhHH----H--------------HHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 3221 0345789999999999975320 0 1222233333457789999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
++..
T Consensus 331 L~~~ 334 (500)
T PRK12296 331 LSFA 334 (500)
T ss_pred HHHH
Confidence 9864
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.88 E-value=4.4e-09 Score=102.83 Aligned_cols=109 Identities=16% Similarity=0.087 Sum_probs=73.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+|||+|++.|..+|..++..++++|+|+|.++- ...++.+.+..+. ..++|++|++||+|
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD 358 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID 358 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence 48899999999999999999999999999999998761 1223333333332 24689999999999
Q ss_pred hhhhhhcc--CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKK--SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~--~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+....... ..+..+ ..+...+ ...+.++++||++|.||.++|+.
T Consensus 359 l~~~~~e~v~~eL~~~------------~ll~e~~-g~~vpvv~VSAktG~GIdeLle~ 404 (742)
T CHL00189 359 KANANTERIKQQLAKY------------NLIPEKW-GGDTPMIPISASQGTNIDKLLET 404 (742)
T ss_pred ccccCHHHHHHHHHHh------------ccchHhh-CCCceEEEEECCCCCCHHHHHHh
Confidence 86521100 000000 0000000 02356889999999999999975
No 183
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.87 E-value=3.1e-09 Score=99.29 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=73.2
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchh--------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKK--------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|..+....+.+++..+.+|||+|++..... ...++++++++|+|+|.++ .....+ ...+..
T Consensus 250 T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~----------~~s~~~-~~~l~~ 318 (449)
T PRK05291 250 TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE----------PLTEED-DEILEE 318 (449)
T ss_pred ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC----------CCChhH-HHHHHh
Confidence 344555667778889999999998754321 2347899999999999987 333332 333332
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.|+++|+||+|+..+.... . .....++.+||++|+||+++++.
T Consensus 319 ------~~~~piiiV~NK~DL~~~~~~~----~---------------------~~~~~~i~iSAktg~GI~~L~~~ 364 (449)
T PRK05291 319 ------LKDKPVIVVLNKADLTGEIDLE----E---------------------ENGKPVIRISAKTGEGIDELREA 364 (449)
T ss_pred ------cCCCCcEEEEEhhhccccchhh----h---------------------ccCCceEEEEeeCCCCHHHHHHH
Confidence 3468999999999986421110 0 01234678999999999999963
No 184
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.86 E-value=1e-08 Score=94.82 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=69.8
Q ss_pred EEeee-ccceeeeecCCccc----cc---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh-CCC
Q psy6623 96 HFSFK-NLNFKLFDVGGQRS----ER---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN-NKW 166 (262)
Q Consensus 96 ~~~~~-~~~~~i~D~~Gq~~----~r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~ 166 (262)
.+.+. +.++.+||++|... .+ ..|..+.+.++++|+|+|+++.+ ..+.+.+...+.+++.. .+.
T Consensus 199 ~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~ 271 (424)
T PRK12297 199 VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPR 271 (424)
T ss_pred EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchh
Confidence 34455 67899999999743 11 22333456799999999998631 01233333333333332 233
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.+.|++|++||+|+.... .. .+-+.+.+ .+.++.+||++++||+++++.
T Consensus 272 L~~kP~IVV~NK~DL~~~~------e~------------l~~l~~~l---~~~i~~iSA~tgeGI~eL~~~ 321 (424)
T PRK12297 272 LLERPQIVVANKMDLPEAE------EN------------LEEFKEKL---GPKVFPISALTGQGLDELLYA 321 (424)
T ss_pred ccCCcEEEEEeCCCCcCCH------HH------------HHHHHHHh---CCcEEEEeCCCCCCHHHHHHH
Confidence 4578999999999984210 00 11111211 255788999999999999964
No 185
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.85 E-value=6.6e-09 Score=87.35 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=73.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++.++.+|||+|++.+...+...++.++++|+|+|.++ .........+. ++..
T Consensus 62 g~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~-----------~~~~~~~~~~~-~~~~-- 127 (208)
T cd04166 62 GITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK-----------GVLEQTRRHSY-ILSL-- 127 (208)
T ss_pred CcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC-----------CccHhHHHHHH-HHHH--
Confidence 344444555667788899999999999887777888899999999999885 11112222222 2211
Q ss_pred CCCCeEEEEeeCCchhhhhhcc-CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKK-SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~-~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
....++++++||+|+....-.. ..+.. +..-+...+.-..+.++.+||++|.||.+.
T Consensus 128 ~~~~~iIvviNK~D~~~~~~~~~~~i~~-----------~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 128 LGIRHVVVAVNKMDLVDYSEEVFEEIVA-----------DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cCCCcEEEEEEchhcccCCHHHHHHHHH-----------HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 1224578899999985310000 00000 011111111112345789999999999854
No 186
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.81 E-value=8.5e-09 Score=96.10 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=70.3
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.+..+.+++..+++|||+|++.....+ ..++++++++|+|+|.++ ..+..+. ++..+..
T Consensus 241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK 308 (442)
T ss_pred EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh
Confidence 3445667788889999999997654332 357899999999999987 3333332 4444332
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++|+||+|+... +... +++. ..+.++.+||++ .||.++|+.
T Consensus 309 ----~~~piIlV~NK~Dl~~~-----~~~~-~~~~-----------------~~~~~~~vSak~-~gI~~~~~~ 354 (442)
T TIGR00450 309 ----SKKPFILVLNKIDLKIN-----SLEF-FVSS-----------------KVLNSSNLSAKQ-LKIKALVDL 354 (442)
T ss_pred ----CCCCEEEEEECccCCCc-----chhh-hhhh-----------------cCCceEEEEEec-CCHHHHHHH
Confidence 36899999999998542 1100 0100 113356789997 688888864
No 187
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.80 E-value=1.1e-08 Score=95.15 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+--|+.+....+..++.++.+|||+|++.+.+.......+++++|+|+|.++-. .........+.. +..
T Consensus 68 rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~---------~~~~~~~~~~~~-~~~- 136 (425)
T PRK12317 68 RGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAG---------GVMPQTREHVFL-ART- 136 (425)
T ss_pred cCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCC---------CCCcchHHHHHH-HHH-
Confidence 345666777778888999999999999877655455568899999999998510 001111222211 111
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f~ 236 (262)
....|++|++||+|+....... +.. ..+.+.+.+.. ..+.++++||++|+||.+.+.
T Consensus 137 -~~~~~iivviNK~Dl~~~~~~~--~~~-----------~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 137 -LGINQLIVAINKMDAVNYDEKR--YEE-----------VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred -cCCCeEEEEEEccccccccHHH--HHH-----------HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 2234799999999986410000 000 01112111111 236688999999999998765
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.80 E-value=8.6e-09 Score=99.34 Aligned_cols=111 Identities=19% Similarity=0.133 Sum_probs=75.2
Q ss_pred eeEEEEeeeccceeeeecCCccccchh------hhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKK------WIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~------w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.....+.+++.++++||++|+.+++.. +..|+ ++++++++|+|.++. +..+.+..++.+
T Consensus 31 ~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l-------------er~l~l~~ql~~ 97 (591)
T TIGR00437 31 KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL-------------ERNLYLTLQLLE 97 (591)
T ss_pred EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc-------------hhhHHHHHHHHh
Confidence 344556667788999999999887654 45554 479999999998862 223344444443
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++++||+|+.+++-.... .+.+.++ ..+.+++|||++|+||+++|+.
T Consensus 98 ----~~~PiIIVlNK~Dl~~~~~i~~d---------------~~~L~~~---lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 98 ----LGIPMILALNLVDEAEKKGIRID---------------EEKLEER---LGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred ----cCCCEEEEEehhHHHHhCCChhh---------------HHHHHHH---cCCCEEEEECCCCCCHHHHHHH
Confidence 26899999999998653211100 1122221 2466889999999999999974
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.80 E-value=8.5e-09 Score=96.03 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=70.6
Q ss_pred eeEEEEeeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHH-HHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQ-ESLKLFDSIC 162 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~-e~~~~~~~i~ 162 (262)
.......+++..+.+|||+|+.. .+..+..++++++++|||+|.++- ..... +...+++.
T Consensus 39 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~---------~~~~~~~~~~~l~~-- 107 (435)
T PRK00093 39 RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG---------LTPADEEIAKILRK-- 107 (435)
T ss_pred ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHHHHHHHHHH--
Confidence 44455667788999999999987 445566788999999999998761 11111 12222221
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+.... ... .++ ....+ .++++||++|.||.++|+.
T Consensus 108 -----~~~piilv~NK~D~~~~~---~~~--------------~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~ 156 (435)
T PRK00093 108 -----SNKPVILVVNKVDGPDEE---ADA--------------YEF-----YSLGLGEPYPISAEHGRGIGDLLDA 156 (435)
T ss_pred -----cCCcEEEEEECccCccch---hhH--------------HHH-----HhcCCCCCEEEEeeCCCCHHHHHHH
Confidence 268999999999964310 000 111 11112 2578999999999999964
No 190
>PRK10218 GTP-binding protein; Provisional
Probab=98.79 E-value=1.3e-08 Score=98.13 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=74.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+.+++.++++|||+|+..+...|..+++.++++|+|+|.++ .........+..... .++|+
T Consensus 59 ~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~gip~ 123 (607)
T PRK10218 59 KNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----YGLKP 123 (607)
T ss_pred EEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----cCCCE
Confidence 344566788999999999999999999999999999999999986 222334444444433 36788
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccce
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSI 230 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~ 230 (262)
+++.||+|+...+.... .+-+.+.|.. ..+.+.++||++|.+
T Consensus 124 IVviNKiD~~~a~~~~v----------------l~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 124 IVVINKVDRPGARPDWV----------------VDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred EEEEECcCCCCCchhHH----------------HHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 99999999865321110 1112222211 346788999999985
No 191
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.78 E-value=9e-09 Score=99.09 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+......+.+++.++++|||+|+..|...+..+++.++++|+|+|.++ ........+|..+..
T Consensus 48 rGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~-- 114 (594)
T TIGR01394 48 RGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE-- 114 (594)
T ss_pred CCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH--
Confidence 3445555556778889999999999999999999999999999999999985 234555566666654
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|++||+||+|+..
T Consensus 115 --~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 115 --LGLKPIVVINKIDRPS 130 (594)
T ss_pred --CCCCEEEEEECCCCCC
Confidence 3578999999999864
No 192
>PRK11058 GTPase HflX; Provisional
Probab=98.78 E-value=9.7e-09 Score=95.25 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=71.1
Q ss_pred ccceeEEEEeeecc-ceeeeecCCcccc--chhhh------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNL-NFKLFDVGGQRSE--RKKWI------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~~~-~~~i~D~~Gq~~~--r~~w~------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|+......+.+.+. .+.+|||+|..+. ...|. ..+++++++|+|+|.|+ ... .+.+..+.
T Consensus 231 Tld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~----------~~~-~e~l~~v~ 299 (426)
T PRK11058 231 TLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD----------VRV-QENIEAVN 299 (426)
T ss_pred CcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC----------ccH-HHHHHHHH
Confidence 33334445555553 7889999998432 22333 34689999999999997 322 23332233
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
.++..-...+.|+++++||+|+....... ... .. ...+ ....+||++|+||.++++ +
T Consensus 300 ~iL~el~~~~~pvIiV~NKiDL~~~~~~~-----------------~~~--~~-~~~~-~~v~ISAktG~GIdeL~e--~ 356 (426)
T PRK11058 300 TVLEEIDAHEIPTLLVMNKIDMLDDFEPR-----------------IDR--DE-ENKP-IRVWLSAQTGAGIPLLFQ--A 356 (426)
T ss_pred HHHHHhccCCCCEEEEEEcccCCCchhHH-----------------HHH--Hh-cCCC-ceEEEeCCCCCCHHHHHH--H
Confidence 33322122468999999999985321000 000 00 0011 135699999999999995 3
Q ss_pred HHhhc
Q psy6623 240 FEEKI 244 (262)
Q Consensus 240 L~~~i 244 (262)
+...+
T Consensus 357 I~~~l 361 (426)
T PRK11058 357 LTERL 361 (426)
T ss_pred HHHHh
Confidence 44443
No 193
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.78 E-value=7.9e-09 Score=83.13 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=60.3
Q ss_pred eeecCCccccchhhhc----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 106 LFDVGGQRSERKKWIH----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 106 i~D~~Gq~~~r~~w~~----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+|||+|+...+..|.. .+++++++|+|+|.++-+ +... .++..+ ..+.|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~----------s~~~--~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPE----------SRLP--AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcc----------cccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence 7999998444433422 368999999999998732 1111 122222 135789999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...... .+ .+++.+.. -...+++|||++|+||.++|+.
T Consensus 104 ~~~~~~--~~--------------~~~~~~~~--~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 104 PDADVA--AT--------------RKLLLETG--FEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred CcccHH--HH--------------HHHHHHcC--CCCCEEEEECCCccCHHHHHHH
Confidence 531100 00 22222211 1146889999999999999964
No 194
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.77 E-value=2.4e-08 Score=78.79 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=67.9
Q ss_pred EEEEeeeccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
...+...+..+.+|||+|...... .-..++..++++++|+|+++ .....+.. .+..
T Consensus 41 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~~-~~~~----- 104 (157)
T cd04164 41 EESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDLE-ILEL----- 104 (157)
T ss_pred EEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHHH-HHHh-----
Confidence 334555677899999999765432 11246789999999999997 23333322 2221
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|+++++||+|+..+... .+.+ ....+..+||+++.|+.++++
T Consensus 105 -~~~~~vi~v~nK~D~~~~~~~---------~~~~---------------~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 105 -PADKPIIVVLNKSDLLPDSEL---------LSLL---------------AGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred -hcCCCEEEEEEchhcCCcccc---------cccc---------------CCCceEEEECCCCCCHHHHHH
Confidence 346899999999998753211 0001 224577899999999999985
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.75 E-value=2.5e-08 Score=95.82 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=49.9
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+.+|||+||+.++.+|..+++.++++|+|+|+++- -..++.+.+..+.. .++|++|++||+|+.
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-----------~~~qt~e~i~~l~~----~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YKTPFVVAANKIDRI 134 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-----------CCHhHHHHHHHHHH----cCCCEEEEEECCCcc
Confidence 488999999999999999999999999999999861 11122222222221 368999999999996
Q ss_pred h
Q psy6623 183 E 183 (262)
Q Consensus 183 ~ 183 (262)
.
T Consensus 135 ~ 135 (590)
T TIGR00491 135 P 135 (590)
T ss_pred c
Confidence 4
No 196
>KOG4423|consensus
Probab=98.74 E-value=5.3e-09 Score=84.53 Aligned_cols=109 Identities=11% Similarity=0.089 Sum_probs=77.2
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC---CCCCCCeEEEEeeC
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN---KWFTDTSIILFLNK 178 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~---~~~~~~piil~~NK 178 (262)
+.+++||++||+++-.+...||+.+++...|+|+|. ...++-...|.+.+... +.-..+|+++++||
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~----------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR----------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc----------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 678999999999999999999999999999999998 45555556665555433 33345789999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
||.........+ ..|..|... +.+ -+++||||...||.++-.
T Consensus 145 Cd~e~~a~~~~~--~~~d~f~ke--------------ngf~gwtets~Kenkni~Ea~r 187 (229)
T KOG4423|consen 145 CDQEKSAKNEAT--RQFDNFKKE--------------NGFEGWTETSAKENKNIPEAQR 187 (229)
T ss_pred hccChHhhhhhH--HHHHHHHhc--------------cCccceeeeccccccChhHHHH
Confidence 998653322211 111111111 111 267899999999998875
No 197
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.71 E-value=3.8e-08 Score=81.22 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=65.4
Q ss_pred ccceeeeecCCc----------cccchhhhccccCC---CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGGQ----------RSERKKWIHCFEDV---TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~Gq----------~~~r~~w~~~f~~~---~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
+.++.+|||+|. +.++.....|++.+ +++++|+|.++ .....+ ..+...+..
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~i~~~l~~--- 133 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH----------PLKELD--LQMIEWLKE--- 133 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC----------CCCHHH--HHHHHHHHH---
Confidence 468999999994 33444555666554 67888888765 111111 111122221
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.|+++++||+|+........ + ...+...+......++++||++++|++++|+ ++.+.+
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~-~--------------~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~--~i~~~~ 193 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKK-Q--------------LKKVRKALKFGDDEVILFSSLKKQGIDELRA--AIAKWL 193 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHH-H--------------HHHHHHHHHhcCCceEEEEcCCCCCHHHHHH--HHHHHh
Confidence 3588999999999864210000 0 1222222222245677899999999999995 454443
No 198
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.70 E-value=2.7e-08 Score=79.62 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=69.8
Q ss_pred EEEeeeccceeeeecCCccccch-----------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERK-----------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~-----------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+..++..+.+||++|...... ....++++++++|+|+|.++ ... .....++..+..
T Consensus 43 ~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~ 111 (174)
T cd01895 43 VPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE 111 (174)
T ss_pred eEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh
Confidence 44555677789999999754311 11335689999999999886 222 222333333332
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+....... ... ..+.+.+.+.. ....++.+||++++|+.++++.
T Consensus 112 ----~~~~~iiv~nK~Dl~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 169 (174)
T cd01895 112 ----EGKALVIVVNKWDLVEKDSKT--MKE-----------FKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDA 169 (174)
T ss_pred ----cCCCEEEEEeccccCCccHHH--HHH-----------HHHHHHhhcccccCCceEEEeccCCCCHHHHHHH
Confidence 358999999999986531000 000 01222222221 2356888999999999998864
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.70 E-value=5.2e-08 Score=96.10 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=66.0
Q ss_pred eeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 98 SFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
.+++..+.+|||+|++. ++.....+++.++++|||+|.++- .....+ .+.+ .+.. .+
T Consensus 319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~---------~~~~d~--~i~~-~Lr~---~~ 383 (712)
T PRK09518 319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG---------LTSTDE--RIVR-MLRR---AG 383 (712)
T ss_pred EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHHH--HHHH-HHHh---cC
Confidence 34567899999999864 344556688999999999998751 111111 2222 2221 47
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.|+++|+||+|+.... ... .++....+ . ..+++||++|.||.++|+.
T Consensus 384 ~pvIlV~NK~D~~~~~---~~~--------------~~~~~lg~--~--~~~~iSA~~g~GI~eLl~~ 430 (712)
T PRK09518 384 KPVVLAVNKIDDQASE---YDA--------------AEFWKLGL--G--EPYPISAMHGRGVGDLLDE 430 (712)
T ss_pred CCEEEEEECcccccch---hhH--------------HHHHHcCC--C--CeEEEECCCCCCchHHHHH
Confidence 8999999999985421 000 11111111 1 1357999999999999963
No 200
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.69 E-value=4.2e-08 Score=84.20 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=64.2
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+......+..++.++++|||+|+..+...|..+++.++++|+|+|.++ . -......+++.+..
T Consensus 48 rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~----------g-~~~~~~~~~~~~~~-- 114 (237)
T cd04168 48 RGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE----------G-VQAQTRILWRLLRK-- 114 (237)
T ss_pred CCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC----------C-CCHHHHHHHHHHHH--
Confidence 3445566667788889999999999999999999999999999999999986 1 11233444444332
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++++||+|+..
T Consensus 115 --~~~P~iivvNK~D~~~ 130 (237)
T cd04168 115 --LNIPTIIFVNKIDRAG 130 (237)
T ss_pred --cCCCEEEEEECccccC
Confidence 3689999999999864
No 201
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.68 E-value=1.1e-07 Score=83.22 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=68.8
Q ss_pred eccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
++.++.+|||+|....+. .+..++++++++++|+|.++ ..+.. ..++..+. . .+.|
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~----------~~~~~--~~i~~~l~-~---~~~p 109 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQ----------WNGDG--EFVLTKLQ-N---LKRP 109 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCchH--HHHHHHHH-h---cCCC
Confidence 456789999999854321 23457799999999999987 22222 12222222 2 3689
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehhhHHHhhccCC
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
+++++||+|+..... + .+.+......... .++++||++|.||+++++ ++.+.+..+
T Consensus 110 ~ilV~NK~Dl~~~~~----~--------------~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~--~l~~~l~~~ 166 (270)
T TIGR00436 110 VVLTRNKLDNKFKDK----L--------------LPLIDKYAILEDFKDIVPISALTGDNTSFLAA--FIEVHLPEG 166 (270)
T ss_pred EEEEEECeeCCCHHH----H--------------HHHHHHHHhhcCCCceEEEecCCCCCHHHHHH--HHHHhCCCC
Confidence 999999999853110 0 0011110000111 478899999999999984 566655443
No 202
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.66 E-value=6.7e-08 Score=89.80 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=70.8
Q ss_pred eEEEEeeeccceeeeecCCc--------cccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQ--------RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq--------~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
......+++..+.+|||+|. +.++..+..++++++++|||+|.++ .- ......+ ...+..
T Consensus 38 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~----------~~-~~~d~~i-~~~l~~ 105 (429)
T TIGR03594 38 KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE----------GL-TPEDEEI-AKWLRK 105 (429)
T ss_pred eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CC-CHHHHHH-HHHHHH
Confidence 44555667888999999996 4556667778999999999999875 11 1111112 222221
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+..+.... .+ +....+ .++.+||++|.||.++++.
T Consensus 106 ---~~~piilVvNK~D~~~~~~~~-----------------~~-----~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 106 ---SGKPVILVANKIDGKKEDAVA-----------------AE-----FYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred ---hCCCEEEEEECccCCcccccH-----------------HH-----HHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 268999999999986422100 01 111112 3678999999999999864
No 203
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.65 E-value=1.2e-07 Score=77.63 Aligned_cols=100 Identities=16% Similarity=0.293 Sum_probs=59.0
Q ss_pred ceeeeecCCccc------cchhh----hcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 103 NFKLFDVGGQRS------ERKKW----IHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 103 ~~~i~D~~Gq~~------~r~~w----~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
.+.+||++|... .+..| ..|++ .++++|+|+|.++ . -......++. .+.. .+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~----------~-~~~~~~~~~~-~~~~---~~ 129 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH----------P-LKELDLEMLE-WLRE---RG 129 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC----------C-CCHHHHHHHH-HHHH---cC
Confidence 689999999532 12333 34555 4679999999875 1 1112222232 2222 36
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceee
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIIL 232 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~ 232 (262)
.|+++++||+|+..+.-... ..+.+++.+.. ..+.++.+||++|+||+
T Consensus 130 ~pviiv~nK~D~~~~~~~~~---------------~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKSELNK---------------QLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCEEEEEECcccCCHHHHHH---------------HHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 89999999999863210000 02333343333 23568999999999984
No 204
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.64 E-value=6.4e-08 Score=84.53 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=61.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+......+.+++.++++|||+|+..+...+..+++.++++|+|+|.++- - ......+++. ...
T Consensus 55 rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g----------~-~~~~~~i~~~-~~~- 121 (267)
T cd04169 55 RGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG----------V-EPQTRKLFEV-CRL- 121 (267)
T ss_pred CCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------c-cHHHHHHHHH-HHh-
Confidence 44555666778888999999999999999888777889999999999998861 1 1122233332 221
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++++||+|+..
T Consensus 122 --~~~P~iivvNK~D~~~ 137 (267)
T cd04169 122 --RGIPIITFINKLDREG 137 (267)
T ss_pred --cCCCEEEEEECCccCC
Confidence 3689999999999854
No 205
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.63 E-value=4.4e-08 Score=83.55 Aligned_cols=138 Identities=17% Similarity=0.283 Sum_probs=77.3
Q ss_pred CCCCcCccccceeeecccceeEEEEee-eccceeeeecCCccccch-----hhhccccCCCEEEEeeeccccccccccCc
Q psy6623 73 KEYQPTEQDILRTRVKTTGIVEVHFSF-KNLNFKLFDVGGQRSERK-----KWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146 (262)
Q Consensus 73 ~~y~pt~~Dil~~~~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~-----~w~~~f~~~~~iIfv~dls~~d~~~~e~~ 146 (262)
.+|.|.+.=.+ .||+.+....+.. +.+.+++||.|||..+-. .....|+++.++|||+|+.+
T Consensus 21 ~~~~p~dT~~L---~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs--------- 88 (232)
T PF04670_consen 21 HKYSPRDTLRL---EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS--------- 88 (232)
T ss_dssp S---GGGGGG--------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT----------
T ss_pred cCCCchhcccc---CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc---------
Confidence 46666442211 4777777777764 568999999999976543 35678999999999999984
Q ss_pred ccccHHHHHHHHHHHHhC--CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc---cceee
Q psy6623 147 TTNRMQESLKLFDSICNN--KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF---DSICN 221 (262)
Q Consensus 147 ~~~~l~e~~~~~~~i~~~--~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~---~~~~~ 221 (262)
....+++..+...+.. ...+++.+.++..|+|+..+.-...-... ..+-+.+...+. .+.+|
T Consensus 89 --~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~-----------~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 89 --DDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRD-----------IQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp --STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHH-----------HHHHHHHHHHHTT-TSEEEE
T ss_pred --ccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHH-----------HHHHHHHHhhhccccceEEE
Confidence 2355555555554432 22357899999999998643211100000 022233333333 38899
Q ss_pred cccccccceeeeeeh
Q psy6623 222 NKWFTDTSIILFLNK 236 (262)
Q Consensus 222 ~tsA~d~~~I~~~f~ 236 (262)
.||--| +.|.++|.
T Consensus 156 ~TSI~D-~Sly~A~S 169 (232)
T PF04670_consen 156 LTSIWD-ESLYEAWS 169 (232)
T ss_dssp EE-TTS-THHHHHHH
T ss_pred eccCcC-cHHHHHHH
Confidence 999888 45655554
No 206
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.63 E-value=7.9e-08 Score=81.67 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=53.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++|||+|+..+......+++.++++|+|+|+++ .-..+....++.... .++|++|++||+|
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~-----------g~~~~t~~~l~~~~~----~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE-----------GVCVQTETVLRQALK----ERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC-----------CCCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence 6789999999999999999999999999999999986 223344455555443 2579999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.61 E-value=2.6e-08 Score=92.09 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=71.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++||++|++.+.+.|......++++|+|+|.++- ....+..+.+..+ . .....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g----------~~~~qt~e~l~~l-~--~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP----------CPQPQTKEHLMAL-E--IIGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC----------ccccchHHHHHHH-H--HcCCCeEEEEEEccc
Confidence 45789999999999999998888899999999999851 1012222223222 1 122357899999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehhhHHHhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
+....-.... .+.+.+.+. ...+.++++||++|+||.++++ +|...
T Consensus 146 l~~~~~~~~~---------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e--~L~~~ 194 (406)
T TIGR03680 146 LVSKEKALEN---------------YEEIKEFVKGTVAENAPIIPVSALHNANIDALLE--AIEKF 194 (406)
T ss_pred cCCHHHHHHH---------------HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHH--HHHHh
Confidence 8642100000 011111111 1246688999999999999985 44443
No 208
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.61 E-value=1.2e-07 Score=88.41 Aligned_cols=112 Identities=15% Similarity=0.208 Sum_probs=72.3
Q ss_pred EEeeeccceeeeecCCccccchhh-----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 96 HFSFKNLNFKLFDVGGQRSERKKW-----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 96 ~~~~~~~~~~i~D~~Gq~~~r~~w-----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..++..+.+|||+|.+.....+ ..+++.++++|+|+|.++ ... .....++..+..
T Consensus 215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~- 282 (435)
T PRK00093 215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE- 282 (435)
T ss_pred EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH-
Confidence 344567789999999976543322 246789999999999986 222 223344444433
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..+.... .+ .+.+...+.. ..+.++++||++|.||.++|+.
T Consensus 283 ---~~~~~ivv~NK~Dl~~~~~~~-~~--------------~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~ 338 (435)
T PRK00093 283 ---AGRALVIVVNKWDLVDEKTME-EF--------------KKELRRRLPFLDYAPIVFISALTGQGVDKLLEA 338 (435)
T ss_pred ---cCCcEEEEEECccCCCHHHHH-HH--------------HHHHHHhcccccCCCEEEEeCCCCCCHHHHHHH
Confidence 358999999999986321100 00 2223332222 2356889999999999999975
No 209
>KOG0090|consensus
Probab=98.59 E-value=1.9e-07 Score=77.38 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=79.9
Q ss_pred ccccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhcccc---CCCEEEE
Q psy6623 55 QLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE---DVTAIIF 131 (262)
Q Consensus 55 ~l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~---~~~~iIf 131 (262)
.+.||.+.-| .-++....+.+|. +.+--++..+.+++-..++.|.+|+.+-|.+-..||. .+.+|||
T Consensus 45 Gl~dSGKT~L--F~qL~~gs~~~Tv--------tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 45 GLSDSGKTSL--FTQLITGSHRGTV--------TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred ecCCCCceee--eeehhcCCccCee--------eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 4678877522 1223344555544 2233355666777777899999999999999999997 7999999
Q ss_pred eeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCeEEEEeeCCchhhh
Q psy6623 132 CVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 132 v~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~piil~~NK~Dl~~~ 184 (262)
|+|...++ ....+.-+.+-.++.+. .-..+|++|++||+|++..
T Consensus 115 VVDSa~f~---------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 115 VVDSATFL---------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEeccccc---------hhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 99999874 55666666666666543 3457899999999999753
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.58 E-value=8.6e-08 Score=94.56 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=71.2
Q ss_pred EEEeeeccceeeeecCCccc-cchhh----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGGQRS-ERKKW----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~-~r~~w----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+.+++..+.+|||+|.++ .+..| ..+++.++++|+|+|.++ ..+.+ ...++..+..
T Consensus 491 ~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~~-~~~i~~~~~~ 559 (712)
T PRK09518 491 EIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISEQ-DLKVMSMAVD 559 (712)
T ss_pred eEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCHH-HHHHHHHHHH
Confidence 44566778889999999742 22222 234688999999999987 22333 2345555543
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++||+||+|+..+.... .+ .+.+...+.. .....+++||++|.||.++|+.
T Consensus 560 ----~~~piIiV~NK~DL~~~~~~~-~~--------------~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~ 615 (712)
T PRK09518 560 ----AGRALVLVFNKWDLMDEFRRQ-RL--------------ERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPA 615 (712)
T ss_pred ----cCCCEEEEEEchhcCChhHHH-HH--------------HHHHHHhccCCCCCCEEEEECCCCCCHHHHHHH
Confidence 368999999999986421000 00 1112222211 1123578999999999999985
No 211
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.57 E-value=8.8e-08 Score=74.87 Aligned_cols=106 Identities=20% Similarity=0.106 Sum_probs=68.1
Q ss_pred ccceeeeecCCccccch-------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 101 NLNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
...+.+||++|+..... .+..+++.++++++|+|.++. ....... ++.... ..+.|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~----------~~~~~~~-~~~~~~----~~~~~~i 108 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR----------ADEEEEK-LLELLR----ERGKPVL 108 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC----------CCHHHHH-HHHHHH----hcCCeEE
Confidence 67899999999877653 444588999999999999972 2222221 222222 2478999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCcchhH-HHHHHhhhccceeecccccccceeeeeeh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERN-RMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~-~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++||+|+..+.-.... .. ............++.+||+++.|+.++++
T Consensus 109 vv~nK~D~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 109 LVLNKIDLLPEEEEEEL---------------LELRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEEccccCChhhHHHH---------------HHHHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 99999998642100000 00 00011111456688899999999998885
No 212
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.56 E-value=9.3e-08 Score=82.49 Aligned_cols=93 Identities=9% Similarity=0.075 Sum_probs=63.0
Q ss_pred cccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCC
Q psy6623 113 RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL 191 (262)
Q Consensus 113 ~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l 191 (262)
++++.+...|+++++++++|+|+++ .. ++.....|+. .+.. .++|++|++||+||..++...
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~----------p~~s~~~l~r~l~-~~~~---~~i~~vIV~NK~DL~~~~~~~--- 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVL----------PELSLNQLDRFLV-VAEA---QNIEPIIVLNKIDLLDDEDME--- 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCC----------CCCCHHHHHHHHH-HHHH---CCCCEEEEEECcccCCCHHHH---
Confidence 5677788889999999999999997 33 3444333333 3322 478999999999995422100
Q ss_pred cccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 192 TICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 192 ~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....+.+....+.++++||++|+||+++|+.
T Consensus 87 ---------------~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~ 117 (245)
T TIGR00157 87 ---------------KEQLDIYRNIGYQVLMTSSKNQDGLKELIEA 117 (245)
T ss_pred ---------------HHHHHHHHHCCCeEEEEecCCchhHHHHHhh
Confidence 0111223334466789999999999999963
No 213
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.54 E-value=6.5e-08 Score=79.27 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=56.4
Q ss_pred eccceeeeecCCccccchhhhcc---ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC--CCCCeEEE
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHC---FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW--FTDTSIIL 174 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~---f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~--~~~~piil 174 (262)
.+..+++.|++|+++.|...... ..++.|||||+|.+.+ ...+.++-+.+-.++.... ...+|++|
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLI 117 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILI 117 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence 45679999999999998855554 7899999999999853 3557777777777776543 35789999
Q ss_pred EeeCCchhhh
Q psy6623 175 FLNKKDLFEE 184 (262)
Q Consensus 175 ~~NK~Dl~~~ 184 (262)
++||+|++..
T Consensus 118 acNK~Dl~~A 127 (181)
T PF09439_consen 118 ACNKQDLFTA 127 (181)
T ss_dssp EEE-TTSTT-
T ss_pred EEeCcccccc
Confidence 9999999864
No 214
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.49 E-value=3.3e-07 Score=73.48 Aligned_cols=114 Identities=20% Similarity=0.148 Sum_probs=76.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccc------cchhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRS------ERKKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~------~r~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.|+......+.+++..+.+.|++|.-+ ..+.+..|. +..+++|.|+|.+. ++..+.+..
T Consensus 33 ~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~ 99 (156)
T PF02421_consen 33 TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTL 99 (156)
T ss_dssp SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHH
T ss_pred CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHH
Confidence 344455666777889999999999533 233455554 68999999999875 566677777
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
++... +.|+++++||+|+..++-.... .+.+.+. ..+.+..+||++++|++++.+
T Consensus 100 ql~e~----g~P~vvvlN~~D~a~~~g~~id---------------~~~Ls~~---Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 100 QLLEL----GIPVVVVLNKMDEAERKGIEID---------------AEKLSER---LGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HHHHT----TSSEEEEEETHHHHHHTTEEE----------------HHHHHHH---HTS-EEEEBTTTTBTHHHHHH
T ss_pred HHHHc----CCCEEEEEeCHHHHHHcCCEEC---------------HHHHHHH---hCCCEEEEEeCCCcCHHHHHh
Confidence 77643 6999999999999774311110 2233332 247789999999999998875
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.49 E-value=2.2e-07 Score=89.95 Aligned_cols=121 Identities=14% Similarity=0.111 Sum_probs=74.5
Q ss_pred ecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..|+.+....+.. ++..+.+|||+|++.+.+.....+.+++++|+|+|..+ .-.....+.+.- +..
T Consensus 35 GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~i-l~~- 101 (614)
T PRK10512 35 GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLAI-LQL- 101 (614)
T ss_pred CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHHH-HHH-
Confidence 3454444334433 35678999999999987766777899999999999875 222333333332 221
Q ss_pred CCCCCeEEEEeeCCchhhh-hhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEE-KIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~-kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....+++|++||+|+..+ ++... .+-+.+.+.. ....++.+||++|+||..+++.
T Consensus 102 -lgi~~iIVVlNKiDlv~~~~~~~v----------------~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~ 160 (614)
T PRK10512 102 -TGNPMLTVALTKADRVDEARIAEV----------------RRQVKAVLREYGFAEAKLFVTAATEGRGIDALREH 160 (614)
T ss_pred -cCCCeEEEEEECCccCCHHHHHHH----------------HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 122346799999998642 11110 1112222211 2245788999999999999864
No 216
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.46 E-value=7.4e-07 Score=81.85 Aligned_cols=118 Identities=12% Similarity=0.171 Sum_probs=69.7
Q ss_pred Eeeec-cceeeeecCCccccc-------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh-CCCC
Q psy6623 97 FSFKN-LNFKLFDVGGQRSER-------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN-NKWF 167 (262)
Q Consensus 97 ~~~~~-~~~~i~D~~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~~ 167 (262)
+.+.+ .++.++|++|.-.-. .....+++.++++|+|+|++..+. .+.+.+...+.+++.. .+.+
T Consensus 201 v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~~eL~~~~~~L 273 (390)
T PRK12298 201 VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIIINELEKYSPKL 273 (390)
T ss_pred EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHHHHHHhhhhhh
Confidence 44443 469999999975321 112235789999999999984321 2333333444444433 2334
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..+.. +.. ....+.+.+. ....++.+||+++++|.++++.
T Consensus 274 ~~kP~IlVlNKiDl~~~~e----l~~-----------~l~~l~~~~~-~~~~Vi~ISA~tg~GIdeLl~~ 327 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEEE----AEE-----------RAKAIVEALG-WEGPVYLISAASGLGVKELCWD 327 (390)
T ss_pred cCCCEEEEEeCCccCChHH----HHH-----------HHHHHHHHhC-CCCCEEEEECCCCcCHHHHHHH
Confidence 5789999999999864210 000 0111111111 1124678999999999999963
No 217
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.45 E-value=5.6e-07 Score=77.08 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccc-------hhhhccccCCCEEEEeeecccc
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSER-------KKWIHCFEDVTAIIFCVAMSEY 138 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~ 138 (262)
|.......+.+++..+++||++|+.... ..+..++++++++++|+|+++-
T Consensus 34 T~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 34 TLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred cccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 3334445556788899999999985432 2345689999999999999863
No 218
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.45 E-value=5.7e-07 Score=78.71 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=63.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+......+.+++.++.+|||+|+..+...|..+++.++++|+|+|.++- -.......++.+..
T Consensus 48 rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g-----------~~~~t~~~~~~~~~-- 114 (270)
T cd01886 48 RGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG-----------VEPQTETVWRQADR-- 114 (270)
T ss_pred CCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC-----------CCHHHHHHHHHHHH--
Confidence 34455556677888899999999999999999999999999999999998862 11223344444332
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|++++.||+|+.+
T Consensus 115 --~~~p~ivviNK~D~~~ 130 (270)
T cd01886 115 --YNVPRIAFVNKMDRTG 130 (270)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3589999999999864
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.44 E-value=5.2e-07 Score=75.18 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=73.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+......+..++..+.+.||+|+..+..-...-...++++|+|+|.+. .-.......+..+..
T Consensus 50 g~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~--- 115 (195)
T cd01884 50 GITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-----------GPMPQTREHLLLARQ--- 115 (195)
T ss_pred CccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH---
Confidence 334444445566677889999999998876666667788999999999875 111223333433332
Q ss_pred CCCCe-EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeee
Q psy6623 167 FTDTS-IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 167 ~~~~p-iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~ 233 (262)
.++| ++++.||+|+..+.-....+ .+.+.+.+.. ..+.++++||++|.|+..
T Consensus 116 -~~~~~iIvviNK~D~~~~~~~~~~~--------------~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 116 -VGVPYIVVFLNKADMVDDEELLELV--------------EMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred -cCCCcEEEEEeCCCCCCcHHHHHHH--------------HHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 2355 78999999985211000000 1222222221 347789999999999854
No 220
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.44 E-value=2e-07 Score=86.29 Aligned_cols=108 Identities=13% Similarity=0.034 Sum_probs=64.2
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+++||++|++.+......-..+++++|+|+|+++ .....+....+..+.. ....|+++++||+|+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----------~~~~~~t~~~l~~l~~---~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----------PCPQPQTKEHLMALDI---IGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCChhHHHHHHHHHH---cCCCcEEEEEEeecc
Confidence 578999999998876544444455799999999985 1101222222222211 123478999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.- .... .+.+...+.. ..+.++.+||++|+||.++++.
T Consensus 152 ~~~~~----~~~~-----------~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~ 195 (411)
T PRK04000 152 VSKER----ALEN-----------YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEA 195 (411)
T ss_pred ccchh----HHHH-----------HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHH
Confidence 64210 0000 1111111111 2356788999999999999953
No 221
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.44 E-value=1.2e-06 Score=69.31 Aligned_cols=104 Identities=21% Similarity=0.139 Sum_probs=65.1
Q ss_pred eccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
.+..+.+||++|...... .+..++.+++++++|+|.++.. .... ....+.+.. .+.|
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--------~~~~---~~~~~~~~~----~~~~ 113 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--------GEGD---EFILELLKK----SKTP 113 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--------CchH---HHHHHHHHH----hCCC
Confidence 457889999999765433 3345688999999999998720 1111 122222222 1589
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeeh
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++++||+|+..... . .......+.. ....++.+||+++.++.++|+
T Consensus 114 ~iiv~nK~Dl~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 114 VILVLNKIDLVKDKE---D---------------LLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred EEEEEEchhccccHH---H---------------HHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 999999999863110 0 1111112222 124578899999999999885
No 222
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.43 E-value=1.1e-06 Score=76.67 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=63.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+......+.+++..+.+|||+|+..+...+..+++.++++|+|+|.++- ........|+.+..
T Consensus 48 r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g-----------~~~~~~~~~~~~~~-- 114 (268)
T cd04170 48 RKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG-----------VEVGTEKLWEFADE-- 114 (268)
T ss_pred hcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC-----------CCHHHHHHHHHHHH--
Confidence 45566666677788889999999999998888899999999999999999862 11223344443322
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.+.|+++++||+|+..
T Consensus 115 --~~~p~iivvNK~D~~~ 130 (268)
T cd04170 115 --AGIPRIIFINKMDRER 130 (268)
T ss_pred --cCCCEEEEEECCccCC
Confidence 3689999999999864
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.42 E-value=6.9e-07 Score=75.24 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=51.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+++|||+|+..+...+..++..++++|+|+|.++ .... ....+++.... .+.|+++++||+|
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~----------~~~~-~~~~~~~~~~~----~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVE----------GVTS-NTERLIRHAIL----EGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCC----------CCCH-HHHHHHHHHHH----cCCCEEEEEECcc
Confidence 4789999999999999899999999999999999986 2222 22333333322 3489999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 75
No 224
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.42 E-value=4.1e-07 Score=87.66 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=48.8
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+.+|||+|++.|+.+|...+..++++|+|+|.++- ...++...+..+.. .++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-----------~~~qt~e~i~~~~~----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-----------FQPQTIEAINILKR----RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-----------CCHhHHHHHHHHHH----cCCCEEEEEECcCCc
Confidence 68999999999999999999999999999998861 11222223322221 368999999999985
No 225
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.40 E-value=5.9e-07 Score=85.53 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=61.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..|+......+.+++.++++|||+|+..+......+++.++++|+|+|.++ . -......+++. +.
T Consensus 64 giSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~----------g-v~~~t~~l~~~-~~--- 128 (526)
T PRK00741 64 GISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK----------G-VEPQTRKLMEV-CR--- 128 (526)
T ss_pred CCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCC----------C-CCHHHHHHHHH-HH---
Confidence 344445556788889999999999999998877788999999999999986 1 11223334433 22
Q ss_pred CCCCeEEEEeeCCchhh
Q psy6623 167 FTDTSIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~ 183 (262)
..++|+++|+||+|+..
T Consensus 129 ~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 129 LRDTPIFTFINKLDRDG 145 (526)
T ss_pred hcCCCEEEEEECCcccc
Confidence 24789999999999854
No 226
>PRK13351 elongation factor G; Reviewed
Probab=98.39 E-value=5.5e-07 Score=88.65 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=67.0
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..|++.....+.+++..+++|||+|+..+...+..+++.++++|+|+|.++ ... ......|+.+..
T Consensus 56 ~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~-~~~~~~~~~~~~- 123 (687)
T PRK13351 56 ERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQ-PQTETVWRQADR- 123 (687)
T ss_pred hcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCC-HHHHHHHHHHHh-
Confidence 46778887777888899999999999999999999999999999999999986 222 223344444332
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++++||+|+..
T Consensus 124 ---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 124 ---YGIPRLIFINKMDRVG 139 (687)
T ss_pred ---cCCCEEEEEECCCCCC
Confidence 3689999999999875
No 227
>PRK00089 era GTPase Era; Reviewed
Probab=98.35 E-value=5.9e-07 Score=79.31 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=69.6
Q ss_pred eccceeeeecCCccccch--------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERK--------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~--------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
++..+.+|||+|....+. .+...+.+++++++|+|.++. +.+....+...+.. .+.|
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~------------~~~~~~~i~~~l~~---~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK------------IGPGDEFILEKLKK---VKTP 115 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC------------CChhHHHHHHHHhh---cCCC
Confidence 457899999999754332 233467899999999998861 11122222222221 3589
Q ss_pred EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 172 IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 172 iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
+++++||+|+...+-...+. .+.+.+.+ ....++.+||+++.|+.++++ +|...+..+
T Consensus 116 vilVlNKiDl~~~~~~l~~~--------------~~~l~~~~--~~~~i~~iSA~~~~gv~~L~~--~L~~~l~~~ 173 (292)
T PRK00089 116 VILVLNKIDLVKDKEELLPL--------------LEELSELM--DFAEIVPISALKGDNVDELLD--VIAKYLPEG 173 (292)
T ss_pred EEEEEECCcCCCCHHHHHHH--------------HHHHHhhC--CCCeEEEecCCCCCCHHHHHH--HHHHhCCCC
Confidence 99999999996311000000 11111111 124577899999999999994 566665543
No 228
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.30 E-value=1e-06 Score=89.13 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=47.8
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+.+|||+|++.+..+....+..++++|+|+|+++-- .....+++.. +.. .++|+++++||+|+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--------~~qT~e~I~~---lk~----~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--------KPQTIEAINI---LRQ----YKTPFVVAANKIDLI 591 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC--------CHhHHHHHHH---HHH----cCCCEEEEEECCCCc
Confidence 799999999999888888889999999999988510 1122223332 222 257999999999985
No 229
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.30 E-value=1.9e-06 Score=80.61 Aligned_cols=129 Identities=14% Similarity=0.015 Sum_probs=76.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+.+....+..++..+++.|++|++.|.+.....+..++++|+|+|.++ ..+ |. .........+.+.-. ..
T Consensus 69 rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~--e~-g~~~~~qT~eh~~~~-~~- 142 (447)
T PLN00043 69 RGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGF--EA-GISKDGQTREHALLA-FT- 142 (447)
T ss_pred cCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cce--ec-ccCCCchHHHHHHHH-HH-
Confidence 3445555566677788899999999999999888889999999999999985 000 00 000011223333222 11
Q ss_pred CCCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeee
Q psy6623 166 WFTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 166 ~~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~ 233 (262)
.++ +++|+.||+|+.........+.. ..+-+...+.. ..+.+.++||.+|+||.+
T Consensus 143 --~gi~~iIV~vNKmD~~~~~~~~~~~~~-----------i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 --LGVKQMICCCNKMDATTPKYSKARYDE-----------IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred --cCCCcEEEEEEcccCCchhhhHHHHHH-----------HHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 245 57889999997521000000000 01112222221 246788999999999964
No 230
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.28 E-value=1.7e-06 Score=82.37 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=57.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+.+++..+++|||+|+..+......+++.++++|+|+|.++- -......+++ ++.. .
T Consensus 67 si~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~---~ 131 (527)
T TIGR00503 67 SITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL---R 131 (527)
T ss_pred cEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh---c
Confidence 33344466777899999999999998877666678999999999998861 1112233333 3322 4
Q ss_pred CCeEEEEeeCCchh
Q psy6623 169 DTSIILFLNKKDLF 182 (262)
Q Consensus 169 ~~piil~~NK~Dl~ 182 (262)
++|+++|+||+|+.
T Consensus 132 ~~PiivviNKiD~~ 145 (527)
T TIGR00503 132 DTPIFTFMNKLDRD 145 (527)
T ss_pred CCCEEEEEECcccc
Confidence 68999999999985
No 231
>KOG0462|consensus
Probab=98.24 E-value=2.5e-06 Score=79.52 Aligned_cols=146 Identities=18% Similarity=0.105 Sum_probs=95.2
Q ss_pred hHHHhhccccCC---C-CCCcCccccc---eeeecccceeEEEEeeec---cceeeeecCCccccchhhhccccCCCEEE
Q psy6623 61 KYFLDDLDRLGA---K-EYQPTEQDIL---RTRVKTTGIVEVHFSFKN---LNFKLFDVGGQRSERKKWIHCFEDVTAII 130 (262)
Q Consensus 61 ~yfl~~l~ri~~---~-~y~pt~~Dil---~~~~pT~Gi~~~~~~~~~---~~~~i~D~~Gq~~~r~~w~~~f~~~~~iI 130 (262)
..+.+++-+++. + ...+..-|-+ |.|--|+-.....+.+++ ..+++.||+|+--|+.--..-+.-|+|+|
T Consensus 74 STLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~l 153 (650)
T KOG0462|consen 74 STLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGAL 153 (650)
T ss_pred chHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceE
Confidence 356677777765 1 1122222222 234444444555566666 88999999999998887788888999999
Q ss_pred EeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH
Q psy6623 131 FCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ 210 (262)
Q Consensus 131 fv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~ 210 (262)
+|||.+. --..+.+.-|....+ .+..+|.|+||+|++.+..... ..-+.
T Consensus 154 LvVDA~q-----------GvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V----------------~~q~~ 202 (650)
T KOG0462|consen 154 LVVDASQ-----------GVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERV----------------ENQLF 202 (650)
T ss_pred EEEEcCc-----------CchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHH----------------HHHHH
Confidence 9999986 344445444444443 2577899999999986432211 22333
Q ss_pred HHhhhccceeecccccccceeeeeehh
Q psy6623 211 ESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 211 ~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.|..-.--+..+|||.|.|+.+++.+
T Consensus 203 ~lF~~~~~~~i~vSAK~G~~v~~lL~A 229 (650)
T KOG0462|consen 203 ELFDIPPAEVIYVSAKTGLNVEELLEA 229 (650)
T ss_pred HHhcCCccceEEEEeccCccHHHHHHH
Confidence 444333334667999999999997754
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.20 E-value=3e-06 Score=78.36 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=72.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|.-|+......+..++.++.++||+|++.|-+....-...++++|+|+|.+. .-.....+.+.-+.
T Consensus 64 rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~-----------G~~~qt~~~~~~~~--- 129 (406)
T TIGR02034 64 QGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK-----------GVLEQTRRHSYIAS--- 129 (406)
T ss_pred CCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCccccHHHHHHHH---
Confidence 3445555566677778899999999999886555556789999999999875 11111122222111
Q ss_pred CCCCCeEEEEeeCCchhhhhhcc-CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeee
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKK-SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~-~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.+...+++|+.||+|+....-.. ..+...+ .+++. ++.-..+.+.++||++|+||...
T Consensus 130 ~~~~~~iivviNK~D~~~~~~~~~~~i~~~~----------~~~~~-~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 130 LLGIRHVVLAVNKMDLVDYDEEVFENIKKDY----------LAFAE-QLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HcCCCcEEEEEEecccccchHHHHHHHHHHH----------HHHHH-HcCCCCccEEEeecccCCCCccc
Confidence 11234689999999985311000 0000000 11111 11112355788999999999864
No 233
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.19 E-value=4.9e-06 Score=70.83 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=70.5
Q ss_pred EEeeeccceeeeecCCccccchhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 96 HFSFKNLNFKLFDVGGQRSERKKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 96 ~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
.+..++..+++.|++|++.+.+-...... .++++++|+|... .-......++..+.. .+.|++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~-----------g~~~~d~~~l~~l~~----~~ip~i 142 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA-----------GIIGMTKEHLGLALA----LNIPVF 142 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEE
Confidence 34456778999999999888654444443 5899999999764 112333344443332 257899
Q ss_pred EEeeCCchhhh-hhcc--CCCcccCCCCCCCC--------cch-hHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 174 LFLNKKDLFEE-KIKK--SPLTICFPEYAGKR--------PGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 174 l~~NK~Dl~~~-kl~~--~~l~~~fp~~~g~~--------~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+++||+|+..+ ++.. ..+...+. -.|.. ..+ .....+.-....+.++.+||.+|+|++++..
T Consensus 143 vvvNK~D~~~~~~~~~~~~~l~~~L~-~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 143 VVVTKIDLAPANILQETLKDLKRILK-VPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred EEEECccccCHHHHHHHHHHHHHHhc-CCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence 99999998542 1111 01111110 00100 000 1111111111345788999999999988774
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.16 E-value=3.8e-06 Score=82.73 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=62.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.-|+-.....+.+++.++.+|||+|+..+...+..+++.++++|+|+|.++ ... .+....+..+..
T Consensus 60 giti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~----------g~~-~~~~~~~~~~~~--- 125 (689)
T TIGR00484 60 GITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG----------GVQ-PQSETVWRQANR--- 125 (689)
T ss_pred CCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC----------CCC-hhHHHHHHHHHH---
Confidence 345555567778889999999999999988889999999999999999886 111 223344443332
Q ss_pred CCCCeEEEEeeCCchhh
Q psy6623 167 FTDTSIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~ 183 (262)
.++|++|++||+|+..
T Consensus 126 -~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 126 -YEVPRIAFVNKMDKTG 141 (689)
T ss_pred -cCCCEEEEEECCCCCC
Confidence 3589999999999864
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.15 E-value=5.7e-06 Score=76.26 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=52.0
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-|+......+..++.++.+|||+|++.|.+....-...++++|+|+|..+ .-.....+.+..+...
T Consensus 61 ~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~~--- 126 (394)
T TIGR00485 61 ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQV--- 126 (394)
T ss_pred cceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHHc---
Confidence 34444444454466789999999998876544444566799999999875 1223334444443322
Q ss_pred CCCe-EEEEeeCCchhh
Q psy6623 168 TDTS-IILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~p-iil~~NK~Dl~~ 183 (262)
++| +++++||+|+..
T Consensus 127 -gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 127 -GVPYIVVFLNKCDMVD 142 (394)
T ss_pred -CCCEEEEEEEecccCC
Confidence 455 457899999864
No 236
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.13 E-value=6.3e-06 Score=81.77 Aligned_cols=109 Identities=21% Similarity=0.141 Sum_probs=71.4
Q ss_pred EEEEeeeccceeeeecCCccccchh----------hhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKK----------WIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~----------w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
...+..++.++++||++|+.++... ...|+ +.++++|+|+|.++ .++ .+.++.++
T Consensus 42 ~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~----------ler---~l~l~~ql 108 (772)
T PRK09554 42 EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LER---NLYLTLQL 108 (772)
T ss_pred EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc----------chh---hHHHHHHH
Confidence 3445667789999999999776431 33343 47999999999887 222 23344444
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+ .+.|+++++||+|+.+++-... +.+-+.++ ..+.+..+||++|+||+++.+.
T Consensus 109 ~e----~giPvIvVlNK~Dl~~~~~i~i---------------d~~~L~~~---LG~pVvpiSA~~g~GIdeL~~~ 162 (772)
T PRK09554 109 LE----LGIPCIVALNMLDIAEKQNIRI---------------DIDALSAR---LGCPVIPLVSTRGRGIEALKLA 162 (772)
T ss_pred HH----cCCCEEEEEEchhhhhccCcHH---------------HHHHHHHH---hCCCEEEEEeecCCCHHHHHHH
Confidence 43 2689999999999864321000 01222222 3456788999999999988764
No 237
>PRK12740 elongation factor G; Reviewed
Probab=98.13 E-value=4.4e-06 Score=82.09 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..|++.....+.+++..+.+|||+|+..+...|..+++.++++|+|+|.++- . .......+..+..
T Consensus 43 ~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~-~~~~~~~~~~~~~- 110 (668)
T PRK12740 43 ERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------V-EPQTETVWRQAEK- 110 (668)
T ss_pred hcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------c-CHHHHHHHHHHHH-
Confidence 456788888888889999999999999998888899999999999999999861 1 2233344444432
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.+.|+++++||+|+..
T Consensus 111 ---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 111 ---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred ---cCCCEEEEEECCCCCC
Confidence 3689999999999864
No 238
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=9.2e-06 Score=75.72 Aligned_cols=110 Identities=17% Similarity=0.048 Sum_probs=74.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.-.+.+.||+|++.|-.+...-..=+|.+|+|+|..| .-..+..|++...+ -.++|++|..||+|
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD--------Gv~pQTiEAI~hak-------~a~vP~iVAiNKiD 118 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD--------GVMPQTIEAINHAK-------AAGVPIVVAINKID 118 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC--------CcchhHHHHHHHHH-------HCCCCEEEEEeccc
Confidence 4578999999999999999888888999999999986 11233344444332 24799999999999
Q ss_pred hhhhhhcc--CCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhh
Q psy6623 181 LFEEKIKK--SPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 238 (262)
Q Consensus 181 l~~~kl~~--~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~ 238 (262)
.+.....+ .++..+ | +.-+.+. +.+.+..+||++|+||.++...-
T Consensus 119 k~~~np~~v~~el~~~-----g-------l~~E~~g-g~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 119 KPEANPDKVKQELQEY-----G-------LVPEEWG-GDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred CCCCCHHHHHHHHHHc-----C-------CCHhhcC-CceEEEEeeccCCCCHHHHHHHH
Confidence 87421110 111110 1 0001111 44678899999999999999863
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.09 E-value=4.8e-06 Score=78.52 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=71.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|.-|+......+..++..+.++||+|++.+.+....-...++++|+|+|...-- .....+...+.. .+
T Consensus 91 rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--------~~qt~~~~~l~~-~l--- 158 (474)
T PRK05124 91 QGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--------LDQTRRHSFIAT-LL--- 158 (474)
T ss_pred cCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cccchHHHHHHH-Hh---
Confidence 344554555566677889999999999888655555568999999999987510 011111111111 11
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH---Hhh-hccceeecccccccceeeeee
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE---SLK-LFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~---~f~-~~~~~~~~tsA~d~~~I~~~f 235 (262)
...+++|++||+|+.+.. ...+... .+.+.. ++. .....++++||++|+||...-
T Consensus 159 --g~~~iIvvvNKiD~~~~~--~~~~~~i-----------~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 159 --GIKHLVVAVNKMDLVDYS--EEVFERI-----------REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred --CCCceEEEEEeeccccch--hHHHHHH-----------HHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 224789999999986311 0000000 111111 111 123567899999999998653
No 240
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.06 E-value=1.1e-05 Score=63.80 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred ceeeeecCCc----------cccchhhhcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 103 NFKLFDVGGQ----------RSERKKWIHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 103 ~~~i~D~~Gq----------~~~r~~w~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
.+.+||++|. +.++..+..|+. +++++++++|..... .....+...++.. .+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-------~~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-------LG 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-------cC
Confidence 8899999993 334555556664 457888898887510 0111122223222 14
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh--hccceeecccccccceeeeeeh
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK--LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~--~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.|+++++||+|+........ . ..-+..... .....++++||+++.++.++++
T Consensus 111 ~~vi~v~nK~D~~~~~~~~~-~--------------~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 111 IPFLVVLTKADKLKKSELAK-A--------------LKEIKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred CCEEEEEEchhcCChHHHHH-H--------------HHHHHHHHHhccCCCceEEEecCCCCCHHHHHH
Confidence 79999999999853210000 0 111111111 1335577999999999999884
No 241
>PRK12736 elongation factor Tu; Reviewed
Probab=98.05 E-value=1.1e-05 Score=74.36 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=52.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.++||+|++.|.+....-...++++|+|+|.++ .-.....+.+..+.. .
T Consensus 62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~----~ 126 (394)
T PRK12736 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQ----V 126 (394)
T ss_pred cEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH----c
Confidence 3333334444466788999999998876655555677899999999875 122333444443332 2
Q ss_pred CCe-EEEEeeCCchh
Q psy6623 169 DTS-IILFLNKKDLF 182 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~ 182 (262)
++| ++|++||+|+.
T Consensus 127 g~~~~IvviNK~D~~ 141 (394)
T PRK12736 127 GVPYLVVFLNKVDLV 141 (394)
T ss_pred CCCEEEEEEEecCCc
Confidence 466 78899999986
No 242
>PRK13768 GTPase; Provisional
Probab=97.98 E-value=4.3e-06 Score=72.45 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=69.7
Q ss_pred cceeeeecCCccc---cchhhhccccC-----CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 102 LNFKLFDVGGQRS---ERKKWIHCFED-----VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 102 ~~~~i~D~~Gq~~---~r~~w~~~f~~-----~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
..+.+||++|+.. ++..|..+++. .++++||+|.+.... ...+.. ..++...... ..+.|++
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~-~~~l~~~~~~--~~~~~~i 166 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVS-LLLLALSVQL--RLGLPQI 166 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHH-HHHHHHHHHH--HcCCCEE
Confidence 3678999999866 46677665544 789999999975110 111111 1222211111 1368999
Q ss_pred EEeeCCchhhhhhccCCCcccCCC----------CCCCCcch-hHHHHHHhhhc--cceeecccccccceeeeeehhhHH
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPE----------YAGKRPGE-RNRMQESLKLF--DSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~----------~~g~~~~~-~~~i~~~f~~~--~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
+++||+|+..+.-. ..+..++.+ -.|.. .. ..-+.+.+.+. ...++.+||+++++++++. .++
T Consensus 167 ~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~--~~I 242 (253)
T PRK13768 167 PVLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY--AAI 242 (253)
T ss_pred EEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH--HHH
Confidence 99999998643111 001111110 00111 01 11111122221 2356789999999999988 456
Q ss_pred Hhhcc
Q psy6623 241 EEKIK 245 (262)
Q Consensus 241 ~~~i~ 245 (262)
.+.+.
T Consensus 243 ~~~l~ 247 (253)
T PRK13768 243 QEVFC 247 (253)
T ss_pred HHHcC
Confidence 55543
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.98 E-value=1.7e-05 Score=77.44 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=70.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|+-.....+..++.++.++||+|++.+-..-..-...+|++|+|+|.++-- .....+...+...
T Consensus 89 g~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~------ 154 (632)
T PRK05506 89 GITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASL------ 154 (632)
T ss_pred CcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHH------
Confidence 34444455566777889999999999887655555678899999999986410 1111122222211
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH---HHhhhccceeecccccccceeeee
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ---ESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~---~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
....+++|++||+|+.... ...+... ...+. .++.-..+.++++||++|.||...
T Consensus 155 ~~~~~iivvvNK~D~~~~~--~~~~~~i-----------~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 155 LGIRHVVLAVNKMDLVDYD--QEVFDEI-----------VADYRAFAAKLGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred hCCCeEEEEEEecccccch--hHHHHHH-----------HHHHHHHHHHcCCCCccEEEEecccCCCcccc
Confidence 1235789999999985310 0000000 01111 111112345788999999999853
No 244
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.98 E-value=3.2e-06 Score=76.95 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=62.6
Q ss_pred ccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCC
Q psy6623 112 QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPL 191 (262)
Q Consensus 112 q~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l 191 (262)
++.++.+...+++++++|++|+|+.++. .++ ...+...+ .+.|++|++||+|+..+......+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~---------~s~---~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE---------GSL---IPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC---------CCc---cHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHH
Confidence 5678888888999999999999998743 111 12222222 257999999999996421110000
Q ss_pred cccCCCCCCCCcchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 192 TICFPEYAGKRPGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 192 ~~~fp~~~g~~~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++.+.+....+ .++.+||++|.||.++|+.
T Consensus 113 --------------~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~ 147 (360)
T TIGR03597 113 --------------KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDK 147 (360)
T ss_pred --------------HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHH
Confidence 3444444443333 3778999999999999863
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.97 E-value=1.7e-05 Score=74.31 Aligned_cols=128 Identities=15% Similarity=0.044 Sum_probs=74.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|+.+....+..++..+++.|++|++.|-+........++++|+|+|.++=- .|.. ...-....+.+..+..
T Consensus 70 GiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~---~e~~-~~~~~qT~eh~~~~~~--- 142 (446)
T PTZ00141 70 GITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE---FEAG-ISKDGQTREHALLAFT--- 142 (446)
T ss_pred CEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCc---eecc-cCCCccHHHHHHHHHH---
Confidence 34444555667778889999999999999887777788999999999987500 0000 0000122333332221
Q ss_pred CCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeee
Q psy6623 167 FTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 167 ~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~ 233 (262)
.++ .++++.||+|...-.-....+... .+-+...+.. ..+.+.++||.+|+||.+
T Consensus 143 -~gi~~iiv~vNKmD~~~~~~~~~~~~~i-----------~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 143 -LGVKQMIVCINKMDDKTVNYSQERYDEI-----------KKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred -cCCCeEEEEEEccccccchhhHHHHHHH-----------HHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 244 478999999953200000000000 1122222221 347788999999999964
No 246
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=4.3e-06 Score=69.06 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=56.1
Q ss_pred cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCccc
Q psy6623 115 ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 194 (262)
Q Consensus 115 ~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~ 194 (262)
++..+..+++++++||+|+|+++.+. ...+.+ .. ...+.|+++++||+|+..+......+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~---------~~~~~l------~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~--- 83 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG---------SLIPRL------RL--FGGNNPVILVGNKIDLLPKDKNLVRI--- 83 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC---------ccchhH------HH--hcCCCcEEEEEEchhcCCCCCCHHHH---
Confidence 68899999999999999999987321 111111 11 12467999999999985321000000
Q ss_pred CCCCCCCCcchhHHHH-HHhhhcc---ceeecccccccceeeeeehh
Q psy6623 195 FPEYAGKRPGERNRMQ-ESLKLFD---SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 195 fp~~~g~~~~~~~~i~-~~f~~~~---~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.. ..+.... ..++.+||++|.||+++++.
T Consensus 84 -----------~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~ 119 (190)
T cd01855 84 -----------KNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINA 119 (190)
T ss_pred -----------HHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHH
Confidence 11210 0011111 13678999999999999863
No 247
>PRK12735 elongation factor Tu; Reviewed
Probab=97.95 E-value=1.1e-05 Score=74.46 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=51.3
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.++||+|++.|.+.-..-..+++++|+|+|..+ .-.....+.+..+.. .
T Consensus 62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~-----------g~~~qt~e~l~~~~~----~ 126 (396)
T PRK12735 62 TINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----V 126 (396)
T ss_pred eEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchhHHHHHHHHHH----c
Confidence 3333334455566788999999998775555555678899999999875 112223333333321 2
Q ss_pred CCeEE-EEeeCCchhh
Q psy6623 169 DTSII-LFLNKKDLFE 183 (262)
Q Consensus 169 ~~pii-l~~NK~Dl~~ 183 (262)
++|.+ +++||+|+..
T Consensus 127 gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 127 GVPYIVVFLNKCDMVD 142 (396)
T ss_pred CCCeEEEEEEecCCcc
Confidence 46754 6799999863
No 248
>KOG1144|consensus
Probab=97.90 E-value=1.3e-05 Score=76.98 Aligned_cols=117 Identities=16% Similarity=0.052 Sum_probs=76.6
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+-+.||.|+++|..+....-..|+.+|+|+|+..= . .....+++.+++. .++|+||.+||+|.+=
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG----l----epqtiESi~lLR~-------rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG----L----EPQTIESINLLRM-------RKTPFIVALNKIDRLY 606 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhcc----C----CcchhHHHHHHHh-------cCCCeEEeehhhhhhc
Confidence 56899999999999998888889999999999851 1 2344566666543 5799999999999752
Q ss_pred h--hhccCCCcccCCCCCCCCcch----hHHHHHHhhh---------------ccceeecccccccceeeeee
Q psy6623 184 E--KIKKSPLTICFPEYAGKRPGE----RNRMQESLKL---------------FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 184 ~--kl~~~~l~~~fp~~~g~~~~~----~~~i~~~f~~---------------~~~~~~~tsA~d~~~I~~~f 235 (262)
. .....++...+...+..-..+ .+-|...|.. +-+.+.+|||.+|+||-.++
T Consensus 607 gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl 679 (1064)
T KOG1144|consen 607 GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLL 679 (1064)
T ss_pred ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHH
Confidence 1 122223332222222211111 2333344433 34556789999999998877
No 249
>KOG1145|consensus
Probab=97.89 E-value=4.5e-05 Score=71.33 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=75.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++-++++.||+|+..|..++..--..+|.|++|+...| .-+.+..+-+... ...++|++|..||+
T Consensus 199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD-----------GVmpQT~EaIkhA----k~A~VpiVvAinKi 263 (683)
T KOG1145|consen 199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD-----------GVMPQTLEAIKHA----KSANVPIVVAINKI 263 (683)
T ss_pred CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC-----------CccHhHHHHHHHH----HhcCCCEEEEEecc
Confidence 56889999999999999999888888999999998765 2333333333222 23579999999999
Q ss_pred chhhhhhccC--CCcc---cCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHH
Q psy6623 180 DLFEEKIKKS--PLTI---CFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 180 Dl~~~kl~~~--~l~~---~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
|.++....+. +|.. ...++. ..+.+...||++|+|+..+-++-+|
T Consensus 264 Dkp~a~pekv~~eL~~~gi~~E~~G----------------GdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 264 DKPGANPEKVKRELLSQGIVVEDLG----------------GDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCCCCCHHHHHHHHHHcCccHHHcC----------------CceeEEEeecccCCChHHHHHHHHH
Confidence 9775332211 1110 011111 3466789999999999988876443
No 250
>CHL00071 tufA elongation factor Tu
Probab=97.89 E-value=3e-05 Score=71.86 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=54.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.+.|++|++.+.+....-...++++++|+|... .-.....+.+..+.. .
T Consensus 62 T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~ 126 (409)
T CHL00071 62 TINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----V 126 (409)
T ss_pred eEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence 3333344555567788999999998876666666788999999999875 122334444443332 2
Q ss_pred CCe-EEEEeeCCchhh
Q psy6623 169 DTS-IILFLNKKDLFE 183 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~~ 183 (262)
++| ++++.||+|+..
T Consensus 127 g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 127 GVPNIVVFLNKEDQVD 142 (409)
T ss_pred CCCEEEEEEEccCCCC
Confidence 467 778999999864
No 251
>KOG1489|consensus
Probab=97.89 E-value=3.9e-05 Score=67.43 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=71.4
Q ss_pred ecccceeEEEEeeecc-ceeeeecCCcccc----c---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNL-NFKLFDVGGQRSE----R---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~-~~~i~D~~Gq~~~----r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
.|++| ++.+++. .+++=|.+|--.- | .....+.+.++.++||+|+|.... .+-++.-..++
T Consensus 232 ~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~ 300 (366)
T KOG1489|consen 232 RPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLI 300 (366)
T ss_pred ccccc----eeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHH
Confidence 46666 2333333 3889999884321 2 223445677999999999998421 13333333333
Q ss_pred HHHHh-CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeeh
Q psy6623 159 DSICN-NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 159 ~~i~~-~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++-. .+.+.+.|.+||+||+|+++.. .+++.+.... ..-.++..||+.++++.++.+
T Consensus 301 ~ELe~yek~L~~rp~liVaNKiD~~eae--------------------~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 301 EELELYEKGLADRPALIVANKIDLPEAE--------------------KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred HHHHHHhhhhccCceEEEEeccCchhHH--------------------HHHHHHHHHHcCCCcEEEeeeccccchHHHHH
Confidence 33322 2456788999999999996421 1232222222 223578899999999887764
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=97.88 E-value=3.2e-05 Score=72.89 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=53.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS- 171 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p- 171 (262)
....+..++.++.++|++|++.|-+.-..-...+|++|+|+|..+ .-.....+.+..+.. .++|
T Consensus 135 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~ 199 (478)
T PLN03126 135 ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPN 199 (478)
T ss_pred EEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCe
Confidence 344455677899999999999886655566678999999999875 222334444443332 2566
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++++.||+|+..
T Consensus 200 iIvvvNK~Dl~~ 211 (478)
T PLN03126 200 MVVFLNKQDQVD 211 (478)
T ss_pred EEEEEecccccC
Confidence 788999999853
No 253
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.87 E-value=2.7e-05 Score=71.67 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=72.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchh--------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKK--------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~--------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.|..+-+..+.++++.+++.||+|-+..... -..-.+.++.|+||+|.+.. -..+-...+.
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~ 319 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE 319 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence 3445677889999999999999998753221 12346789999999999862 1112222332
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....+.|++++.||.||..+..... + + .. .......+||++|+|+..+-+.
T Consensus 320 -----~~~~~~~~i~v~NK~DL~~~~~~~~-~-~----~~----------------~~~~~i~iSa~t~~Gl~~L~~~ 370 (454)
T COG0486 320 -----LLPKKKPIIVVLNKADLVSKIELES-E-K----LA----------------NGDAIISISAKTGEGLDALREA 370 (454)
T ss_pred -----hcccCCCEEEEEechhcccccccch-h-h----cc----------------CCCceEEEEecCccCHHHHHHH
Confidence 1235689999999999976321110 0 0 00 1124677999999998777654
No 254
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.86 E-value=3.2e-05 Score=50.85 Aligned_cols=45 Identities=36% Similarity=0.518 Sum_probs=32.9
Q ss_pred CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 126 VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 126 ~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.++|+|++|+|..+ .-++++-+.+|+++. +.|.+.|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~C--------Gysie~Q~~L~~~ik--~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQC--------GYSIEEQLSLFKEIK--PLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TT--------SS-HHHHHHHHHHHH--HHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCC--------CCCHHHHHHHHHHHH--HHcCCCCEEEEEeccC
Confidence 57899999999854 568899999999997 4678999999999998
No 255
>KOG3886|consensus
Probab=97.83 E-value=1.6e-05 Score=66.81 Aligned_cols=84 Identities=24% Similarity=0.451 Sum_probs=59.4
Q ss_pred ecccceeEEEEee-eccceeeeecCCcccc-----chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH---
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSE-----RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL--- 157 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~-----r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~--- 157 (262)
.+|+.+....+.+ +++.+++||.|||+.+ +..-.+-|++++++|+|+|++. +.++.-+..
T Consensus 37 g~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-----------~e~~~D~~~yqk 105 (295)
T KOG3886|consen 37 GATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-----------REMEKDFHYYQK 105 (295)
T ss_pred CCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----------hhhhhhHHHHHH
Confidence 4566666666665 6699999999999854 3355678999999999999986 333333333
Q ss_pred -HHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 158 -FDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 158 -~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
++.++.+. +.+-+..+..|+||..
T Consensus 106 ~Le~ll~~S--P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 106 CLEALLQNS--PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred HHHHHHhcC--CcceEEEEEeechhcc
Confidence 33445442 4677889999999854
No 256
>PRK12739 elongation factor G; Reviewed
Probab=97.83 E-value=3.2e-05 Score=76.29 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=63.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.-|+-.....+.+++.++.++||+|+..+..-|...++.+|++|+|+|.++ . --......+..+..
T Consensus 57 rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~----------g-~~~qt~~i~~~~~~-- 123 (691)
T PRK12739 57 RGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS----------G-VEPQSETVWRQADK-- 123 (691)
T ss_pred cCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC----------C-CCHHHHHHHHHHHH--
Confidence 3445555667788889999999999999888889999999999999999875 1 11223344444432
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.+.|++++.||+|+..
T Consensus 124 --~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 124 --YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3589999999999874
No 257
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=4.5e-05 Score=70.09 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=73.1
Q ss_pred EEEEeeeccceeeeecCCccccchhhh-----------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWI-----------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~-----------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
...+++++.++.+.||+|-++-.+... .-.+.++.+++|+|.+. .-.++-+.....+.
T Consensus 218 ~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~ia~~i~ 286 (444)
T COG1160 218 DIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRIAGLIE 286 (444)
T ss_pred eeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHHHHHHH
Confidence 344666788999999999876444332 22356999999999986 22333334444444
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+ .+.+++|+.||.|+..+. ......+ .+-+..+|.- .-...+++||++|.+|..+|+.
T Consensus 287 ~----~g~~~vIvvNKWDl~~~~--~~~~~~~-----------k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 287 E----AGRGIVIVVNKWDLVEED--EATMEEF-----------KKKLRRKLPFLDFAPIVFISALTGQGLDKLFEA 345 (444)
T ss_pred H----cCCCeEEEEEccccCCch--hhHHHHH-----------HHHHHHHhccccCCeEEEEEecCCCChHHHHHH
Confidence 3 368899999999987631 0000000 1122222222 2235789999999999999986
No 258
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=7.7e-05 Score=68.78 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=74.1
Q ss_pred eeecccceeEEEEee-----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 85 TRVKTTGIVEVHFSF-----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.|--|+-.+..++.+ +.+.+++.||+|+--|.---...+..|.|+|+|||.|. ---.+.+.-+-
T Consensus 54 ERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ-----------GveAQTlAN~Y 122 (603)
T COG0481 54 ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ-----------GVEAQTLANVY 122 (603)
T ss_pred hcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc-----------chHHHHHHHHH
Confidence 333444434444444 23789999999998887666666788999999999986 11122222222
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+. .+.-|+-|+||+||+.....+. ..-|.+-+.--.--...+|||+|.||.+++.+
T Consensus 123 lAle----~~LeIiPViNKIDLP~Adperv----------------k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~ 180 (603)
T COG0481 123 LALE----NNLEIIPVLNKIDLPAADPERV----------------KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEA 180 (603)
T ss_pred HHHH----cCcEEEEeeecccCCCCCHHHH----------------HHHHHHHhCCCcchheeEecccCCCHHHHHHH
Confidence 2232 2567888999999986321110 11222211111122456999999999988754
No 259
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.73 E-value=7.4e-05 Score=65.99 Aligned_cols=84 Identities=27% Similarity=0.392 Sum_probs=62.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccc---------cchhhhcccc-CCCEEEEeeeccccccccccCcccccHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRS---------ERKKWIHCFE-DVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~f~-~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~ 156 (262)
..|.|++...|..+...+|+.||+|--- ++.- ..-.+ =.++|||++|.|..+ .-++++-..
T Consensus 200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA-i~AL~hl~~~IlF~~D~Se~c--------gy~lE~Q~~ 270 (346)
T COG1084 200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA-ILALRHLAGVILFLFDPSETC--------GYSLEEQIS 270 (346)
T ss_pred ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH-HHHHHHhcCeEEEEEcCcccc--------CCCHHHHHH
Confidence 3566788888888899999999999511 1111 11112 256789999999854 567888899
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+|+++-. .+. .|+++|.||.|+.
T Consensus 271 L~~eIk~--~f~-~p~v~V~nK~D~~ 293 (346)
T COG1084 271 LLEEIKE--LFK-APIVVVINKIDIA 293 (346)
T ss_pred HHHHHHH--hcC-CCeEEEEeccccc
Confidence 9999974 355 8999999999986
No 260
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.73 E-value=4.6e-05 Score=71.44 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=64.9
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+.+.|++|++.+-+-...-...+|++|+|+|..+ .-......+.+. ++. .+.-.+++|++||+|+.
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~----------g~~~~qT~ehl~-i~~--~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE----------SCPQPQTSEHLA-AVE--IMKLKHIIILQNKIDLV 184 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CccchhhHHHHH-HHH--HcCCCcEEEEEeccccc
Confidence 57899999999886665566678999999999885 101112222222 221 12235789999999986
Q ss_pred hh-hhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeeh
Q psy6623 183 EE-KIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 183 ~~-kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. .+... .+.+.+.+. .....++.+||++|+||..+.+
T Consensus 185 ~~~~~~~~----------------~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~ 226 (460)
T PTZ00327 185 KEAQAQDQ----------------YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLE 226 (460)
T ss_pred CHHHHHHH----------------HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHH
Confidence 42 11000 111222111 1345688999999999988874
No 261
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.70 E-value=3.7e-05 Score=61.28 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=52.9
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccC
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF 195 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~f 195 (262)
|.++.+..++++.+|+|+|.++.. ... ...+. ..+.. .+.|+++++||+|+..+...
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~--------~~~---~~~l~-~~~~~---~~~p~iiv~NK~Dl~~~~~~-------- 59 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPE--------LTR---SRKLE-RYVLE---LGKKLLIVLNKADLVPKEVL-------- 59 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCc--------ccC---CHHHH-HHHHh---CCCcEEEEEEhHHhCCHHHH--------
Confidence 667888999999999999987621 001 11111 11211 25799999999998532100
Q ss_pred CCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 196 PEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 196 p~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+. .........++.+||+++.|++++++.
T Consensus 60 ----------~~~~-~~~~~~~~~~~~iSa~~~~gi~~L~~~ 90 (156)
T cd01859 60 ----------EKWK-SIKESEGIPVVYVSAKERLGTKILRRT 90 (156)
T ss_pred ----------HHHH-HHHHhCCCcEEEEEccccccHHHHHHH
Confidence 0000 000111234678999999999988864
No 262
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.68 E-value=5.6e-05 Score=74.89 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=58.0
Q ss_pred eecccceeEEE----EeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVH----FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~----~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+..|++..... +..++..+.+|||+|+..+.......++.+|++|+|+|..+ .-..+....++..
T Consensus 66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~-----------g~~~~t~~~~~~~ 134 (720)
T TIGR00490 66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE-----------GVMPQTETVLRQA 134 (720)
T ss_pred hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC-----------CCCccHHHHHHHH
Confidence 34465543222 44567889999999999988777888999999999999875 1122233444443
Q ss_pred HhCCCCCCCeEEEEeeCCchhh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.+ .+.|+++++||+|...
T Consensus 135 ~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 135 LK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred HH----cCCCEEEEEEChhccc
Confidence 32 2467889999999863
No 263
>PRK00098 GTPase RsgA; Reviewed
Probab=97.65 E-value=8.4e-05 Score=65.97 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=51.2
Q ss_pred ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
..+++.+|+|+|+++ .......+..|-..+.. .++|++|++||+||..++..
T Consensus 78 aaniD~vllV~d~~~----------p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~--------------- 129 (298)
T PRK00098 78 AANVDQAVLVFAAKE----------PDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE--------------- 129 (298)
T ss_pred eecCCEEEEEEECCC----------CCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH---------------
Confidence 489999999999976 22222222233222322 46899999999998521100
Q ss_pred cchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 203 PGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 203 ~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.......+....+.++.+||++++||++++.
T Consensus 130 ---~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 160 (298)
T PRK00098 130 ---ARELLALYRAIGYDVLELSAKEGEGLDELKP 160 (298)
T ss_pred ---HHHHHHHHHHCCCeEEEEeCCCCccHHHHHh
Confidence 1111112222345678999999999998875
No 264
>KOG1490|consensus
Probab=97.63 E-value=7.7e-05 Score=69.14 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=81.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccc---c-chhhhc-----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRS---E-RKKWIH-----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~---~-r~~w~~-----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|.++.+..+.++-..|++.||+|--. + |..... .-+=-.+|+|+.|+|.-+ .-++.+-.++|+
T Consensus 202 TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C--------GySva~QvkLfh 273 (620)
T KOG1490|consen 202 TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC--------GYSVAAQVKLYH 273 (620)
T ss_pred cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh--------CCCHHHHHHHHH
Confidence 33444444455557789999998421 1 111111 011235799999999843 678999999999
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++- |.|.+.|+||++||+|+.. ..++.. + .+.+........+.+..||..+-+||-.|=..
T Consensus 274 sIK--pLFaNK~~IlvlNK~D~m~----~edL~~-----------~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 274 SIK--PLFANKVTILVLNKIDAMR----PEDLDQ-----------KNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred HhH--HHhcCCceEEEeecccccC----ccccCH-----------HHHHHHHHHHhccCceEEEecccchhceeeHHHH
Confidence 996 7899999999999999864 122211 1 23333333335577889999999999887665
No 265
>PRK12289 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.00011 Score=66.63 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=52.6
Q ss_pred hhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCC
Q psy6623 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPE 197 (262)
Q Consensus 119 w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~ 197 (262)
....+.+++.+++|+|+.+ .. .....-.++..+ . ..++|++||+||+||..+.-
T Consensus 83 ~R~~~aNvD~vLlV~d~~~----------p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~----------- 137 (352)
T PRK12289 83 DRPPVANADQILLVFALAE----------PPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTE----------- 137 (352)
T ss_pred echhhhcCCEEEEEEECCC----------CCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHH-----------
Confidence 3446899999999999986 11 111112222222 1 24689999999999853210
Q ss_pred CCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 198 YAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 198 ~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.....+.+....+.++++||++++||.++++
T Consensus 138 --------~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 138 --------QQQWQDRLQQWGYQPLFISVETGIGLEALLE 168 (352)
T ss_pred --------HHHHHHHHHhcCCeEEEEEcCCCCCHHHHhh
Confidence 0111222223345678899999999988885
No 266
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.60 E-value=0.00017 Score=63.41 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=52.0
Q ss_pred ecccceeEEEEee--ec--cceeeeecCC--------------------------ccccchhhhccccC--CCEEEEeee
Q psy6623 87 VKTTGIVEVHFSF--KN--LNFKLFDVGG--------------------------QRSERKKWIHCFED--VTAIIFCVA 134 (262)
Q Consensus 87 ~pT~Gi~~~~~~~--~~--~~~~i~D~~G--------------------------q~~~r~~w~~~f~~--~~~iIfv~d 134 (262)
.+|+++......+ ++ +++++|||+| ++..+..+..++.+ +++++|+++
T Consensus 44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~ 123 (276)
T cd01850 44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE 123 (276)
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence 4566655444433 34 6799999999 33333344356654 778888887
Q ss_pred ccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 135 MSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.+. ..+... ++.++.+.. .+|+++|+||+|+..
T Consensus 124 ~~~-----------~~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~ 157 (276)
T cd01850 124 PTG-----------HGLKPLDIEFMKRLSK-----RVNIIPVIAKADTLT 157 (276)
T ss_pred CCC-----------CCCCHHHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence 664 233333 566666642 589999999999854
No 267
>PRK00049 elongation factor Tu; Reviewed
Probab=97.57 E-value=0.00022 Score=65.81 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-|+......+..++..+.+.||+|++.+.+.-..-...++++++|+|..+ .-.....+.+..+..
T Consensus 61 ~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~-----------g~~~qt~~~~~~~~~---- 125 (396)
T PRK00049 61 ITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ---- 125 (396)
T ss_pred eEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchHHHHHHHHHHH----
Confidence 34444444455567788999999998775555556688999999999875 112333344433332
Q ss_pred CCCeEE-EEeeCCchh
Q psy6623 168 TDTSII-LFLNKKDLF 182 (262)
Q Consensus 168 ~~~pii-l~~NK~Dl~ 182 (262)
.++|.+ ++.||+|+.
T Consensus 126 ~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 126 VGVPYIVVFLNKCDMV 141 (396)
T ss_pred cCCCEEEEEEeecCCc
Confidence 246765 689999986
No 268
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.51 E-value=0.00044 Score=61.89 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred ccceeeeecCCc----cccchhhhc---cccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQ----RSERKKWIH---CFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq----~~~r~~w~~---~f~~~~~iIfv~dls~ 137 (262)
.+.+++||++|+ ...+.+-.. .+++|+++|+|+|++.
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 367999999998 445544334 5899999999999985
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00015 Score=65.95 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=81.9
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.|--|+.+....|+.+...++|.|+.|++-|-+.-..-...+|+.|+|+|.++- +...--.......|..-+.+ .
T Consensus 68 erGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-efE~g~~~~gQtrEH~~La~-t--- 142 (428)
T COG5256 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-EFEAGFGVGGQTREHAFLAR-T--- 142 (428)
T ss_pred hcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-ccccccccCCchhHHHHHHH-h---
Confidence 345677777788888889999999999999988888888899999999999862 10000000122223222221 1
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh--hhccceeecccccccceeeeee
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL--KLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f--~~~~~~~~~tsA~d~~~I~~~f 235 (262)
+.-..++|+.||+|+..= ...+| .-- ..+...+.+.+ ....+.+.++||..|+|+...=
T Consensus 143 --lGi~~lIVavNKMD~v~w-----de~rf----~ei-~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 143 --LGIKQLIVAVNKMDLVSW-----DEERF----EEI-VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred --cCCceEEEEEEccccccc-----CHHHH----HHH-HHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 234568899999998641 00000 000 00011222211 1146788999999999997544
No 270
>PRK00007 elongation factor G; Reviewed
Probab=97.48 E-value=0.00039 Score=68.71 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=57.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-|+-.....+.+++..+++.||+|+..+-.--..-.+.++++|+|+|.+. .-..+....+..+..
T Consensus 61 ~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-----------g~~~qt~~~~~~~~~---- 125 (693)
T PRK00007 61 ITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-----------GVEPQSETVWRQADK---- 125 (693)
T ss_pred CCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-----------CcchhhHHHHHHHHH----
Confidence 34444456677788999999999988765545556788999999999775 122334555555543
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.+.|++++.||+|+..
T Consensus 126 ~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 126 YKVPRIAFVNKMDRTG 141 (693)
T ss_pred cCCCEEEEEECCCCCC
Confidence 2578899999999874
No 271
>COG1159 Era GTPase [General function prediction only]
Probab=97.43 E-value=0.0004 Score=60.71 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=68.9
Q ss_pred eeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 99 FKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 99 ~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
.++..+-+.||+|-..-+..- ..-+.+|+.|+||+|..+- ... .....++.+.+ .+.
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~---------~~~--~d~~il~~lk~----~~~ 115 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG---------WGP--GDEFILEQLKK----TKT 115 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc---------CCc--cHHHHHHHHhh----cCC
Confidence 357888999999965443322 2346889999999998860 111 11112222221 357
Q ss_pred eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccCC
Q psy6623 171 SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 247 (262)
Q Consensus 171 piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~~ 247 (262)
|++++.||+|....+..-.++ .++....+.-. -++++||+.|.|+..+.+ .+...+..+
T Consensus 116 pvil~iNKID~~~~~~~l~~~--------------~~~~~~~~~f~--~ivpiSA~~g~n~~~L~~--~i~~~Lpeg 174 (298)
T COG1159 116 PVILVVNKIDKVKPKTVLLKL--------------IAFLKKLLPFK--EIVPISALKGDNVDTLLE--IIKEYLPEG 174 (298)
T ss_pred CeEEEEEccccCCcHHHHHHH--------------HHHHHhhCCcc--eEEEeeccccCCHHHHHH--HHHHhCCCC
Confidence 999999999976533210011 12222211111 477899999999988884 455555543
No 272
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.28 E-value=0.00044 Score=63.67 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=67.1
Q ss_pred EEEEeeeccceeeeecCCcccc---------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSE---------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.....+.+..|.+.||||-+.. +.....-++.||++|||+|.-. .+...-+.+-.++.
T Consensus 43 y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr- 109 (444)
T COG1160 43 YGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE------------GITPADEEIAKILR- 109 (444)
T ss_pred cceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHH-
Confidence 3445667788999999997632 2233445688999999999764 22222223333332
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+.|++|+.||+|-........ +|-.--| -..+.+||..|.||..+.+.
T Consensus 110 --~~~kpviLvvNK~D~~~~e~~~~-----------------efyslG~----g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 110 --RSKKPVILVVNKIDNLKAEELAY-----------------EFYSLGF----GEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred --hcCCCEEEEEEcccCchhhhhHH-----------------HHHhcCC----CCceEeehhhccCHHHHHHH
Confidence 13689999999999763221111 0100000 12567999999999988864
No 273
>PLN03127 Elongation factor Tu; Provisional
Probab=97.25 E-value=0.00075 Score=63.25 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=54.2
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+--|+......++.++..+.+.||+|++.+-..-..-...+|++++|+|..+ .-..+..+.+..+..
T Consensus 108 rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~-----------g~~~qt~e~l~~~~~-- 174 (447)
T PLN03127 108 RGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-----------GPMPQTKEHILLARQ-- 174 (447)
T ss_pred cCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH--
Confidence 3445555555566667789999999998765544444467999999999764 112233334433322
Q ss_pred CCCCCe-EEEEeeCCchhh
Q psy6623 166 WFTDTS-IILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~p-iil~~NK~Dl~~ 183 (262)
.++| ++++.||+|+..
T Consensus 175 --~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 175 --VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred --cCCCeEEEEEEeeccCC
Confidence 2477 578899999863
No 274
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.18 E-value=0.00072 Score=59.71 Aligned_cols=84 Identities=10% Similarity=0.003 Sum_probs=51.4
Q ss_pred hccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCC
Q psy6623 120 IHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEY 198 (262)
Q Consensus 120 ~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~ 198 (262)
.....++|.+++|+|+.+ .. ++...-+++..+.. .++|++|++||+||..+.-
T Consensus 73 ~~i~anvD~vllV~d~~~----------p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~------------ 126 (287)
T cd01854 73 QVIAANVDQLVIVVSLNE----------PFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE------------ 126 (287)
T ss_pred eeEEEeCCEEEEEEEcCC----------CCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH------------
Confidence 345789999999999986 22 23322233332221 3689999999999854210
Q ss_pred CCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 199 AGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 199 ~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.......+......++.+||+++.|++.++.
T Consensus 127 -------~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~ 157 (287)
T cd01854 127 -------EELELVEALALGYPVLAVSAKTGEGLDELRE 157 (287)
T ss_pred -------HHHHHHHHHhCCCeEEEEECCCCccHHHHHh
Confidence 0000111111335577899999999987774
No 275
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0012 Score=59.08 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=74.7
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
-||.+....|.-..-+|-+-||+|++.|-+....--..|+.+|+++|.-. .-++++.. -..+.. .+
T Consensus 72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTrR-Hs~I~s--LL 137 (431)
T COG2895 72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTRR-HSFIAS--LL 137 (431)
T ss_pred ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhHH-HHHHHH--Hh
Confidence 35555556666678899999999999987766666667899999999742 22233222 122221 23
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeee
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~ 234 (262)
.-..++|..||+||.+=. . . . -+-|...|.. +...+.+.||..|.||-.-
T Consensus 138 GIrhvvvAVNKmDLvdy~--e---~----------~--F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~ 194 (431)
T COG2895 138 GIRHVVVAVNKMDLVDYS--E---E----------V--FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSK 194 (431)
T ss_pred CCcEEEEEEeeecccccC--H---H----------H--HHHHHHHHHHHHHHcCCCcceEEechhccCCccccc
Confidence 345788889999996510 0 0 0 2233333332 5667889999999999654
No 276
>KOG1707|consensus
Probab=97.11 E-value=0.0002 Score=67.41 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=69.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHH----HHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE----SLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e----~~~~~~~i~~~~~~~~~piil~~ 176 (262)
.+...+.|++..+..+-.-.+=++.+++|..|+++++ ...++. |+-++++.... ..++||||+|
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~----------~~T~D~ist~WLPlir~~~~~--~~~~PVILvG 122 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD----------ESTVDRISTKWLPLIRQLFGD--YHETPVILVG 122 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCC----------hHHhhhhhhhhhhhhhcccCC--CccCCEEEEe
Confidence 3446688988655555554667889999999999887 333333 44444443322 3589999999
Q ss_pred eCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 177 NKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 177 NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
||+|+......+ ++ ..+.-|-..|.+ + .++.|||++-.|+.++|..
T Consensus 123 NK~d~~~~~~~s--~e-----------~~~~pim~~f~E--iEtciecSA~~~~n~~e~fYy 169 (625)
T KOG1707|consen 123 NKSDNGDNENNS--DE-----------VNTLPIMIAFAE--IETCIECSALTLANVSELFYY 169 (625)
T ss_pred eccCCccccccc--hh-----------HHHHHHHHHhHH--HHHHHhhhhhhhhhhHhhhhh
Confidence 999986522110 00 002223334433 2 2567999999999999964
No 277
>PTZ00416 elongation factor 2; Provisional
Probab=97.10 E-value=0.00081 Score=67.74 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+.+.||+|+..+-.--....+.+|++|+|+|.++ .-.......|+.+... +.|+++|.||+|
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~-----------g~~~~t~~~~~~~~~~----~~p~iv~iNK~D 155 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE-----------GVCVQTETVLRQALQE----RIRPVLFINKVD 155 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC-----------CcCccHHHHHHHHHHc----CCCEEEEEEChh
Confidence 5678999999998887767777899999999999876 2223344556655542 579999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
No 278
>PRK12288 GTPase RsgA; Reviewed
Probab=97.09 E-value=0.001 Score=60.32 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=49.4
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCc
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRP 203 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~ 203 (262)
.|+|.+++|+++.. ..++...-.++. ++. ..++|++|++||+||..+.- ...
T Consensus 119 ANvD~vlIV~s~~p----------~~s~~~Ldr~L~-~a~---~~~i~~VIVlNK~DL~~~~~-~~~------------- 170 (347)
T PRK12288 119 ANIDQIVIVSAVLP----------ELSLNIIDRYLV-ACE---TLGIEPLIVLNKIDLLDDEG-RAF------------- 170 (347)
T ss_pred EEccEEEEEEeCCC----------CCCHHHHHHHHH-HHH---hcCCCEEEEEECccCCCcHH-HHH-------------
Confidence 56999999999764 223322222222 222 24689999999999964210 000
Q ss_pred chhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 204 ~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..-..+.+....+.++.+||++++||.++++
T Consensus 171 --~~~~~~~y~~~g~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 171 --VNEQLDIYRNIGYRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred --HHHHHHHHHhCCCeEEEEeCCCCcCHHHHHH
Confidence 0111112222345678899999999999885
No 279
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.07 E-value=0.00078 Score=53.77 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=46.2
Q ss_pred ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
.+++|.|++|+|.++.. ...-.. +...+.. ...+.|+++++||+|+..+.. +
T Consensus 6 l~~aD~il~VvD~~~p~--------~~~~~~----i~~~l~~-~~~~~p~ilVlNKiDl~~~~~----~----------- 57 (157)
T cd01858 6 IDSSDVVIQVLDARDPM--------GTRCKH----VEEYLKK-EKPHKHLIFVLNKCDLVPTWV----T----------- 57 (157)
T ss_pred hhhCCEEEEEEECCCCc--------cccCHH----HHHHHHh-ccCCCCEEEEEEchhcCCHHH----H-----------
Confidence 57899999999988621 111112 2222221 123589999999999954210 0
Q ss_pred cchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 203 PGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 203 ~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++...-.......+.+||+.+.|+..+.+
T Consensus 58 ---~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~ 88 (157)
T cd01858 58 ---ARWVKILSKEYPTIAFHASINNPFGKGSLIQ 88 (157)
T ss_pred ---HHHHHHHhcCCcEEEEEeeccccccHHHHHH
Confidence 0111111111123346688888888877664
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.05 E-value=0.0014 Score=60.60 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|--|+=..-..+.+++..++|.||.|+.-|----..-..=+++|+++||.++ --+.+..-.++..+..
T Consensus 52 RGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~~- 119 (603)
T COG1217 52 RGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALAL- 119 (603)
T ss_pred cCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHHc-
Confidence 3333333445577889999999999998776655666677999999999986 3344444444444432
Q ss_pred CCCCCeEEEEeeCCchhhhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEK 185 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~k 185 (262)
+.+-||+.||+|.+..+
T Consensus 120 ---gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 120 ---GLKPIVVINKIDRPDAR 136 (603)
T ss_pred ---CCCcEEEEeCCCCCCCC
Confidence 34556778999987654
No 281
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.05 E-value=0.0014 Score=51.42 Aligned_cols=78 Identities=18% Similarity=0.065 Sum_probs=44.0
Q ss_pred cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCC
Q psy6623 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK 201 (262)
Q Consensus 122 ~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~ 201 (262)
..++++++|+|+|..+-. ...-.+..+++.. . ..+.|+++++||+|+..+..
T Consensus 8 ~i~~aD~vl~ViD~~~p~--------~~~~~~l~~~l~~----~-~~~k~~iivlNK~DL~~~~~--------------- 59 (141)
T cd01857 8 VVERSDIVVQIVDARNPL--------LFRPPDLERYVKE----V-DPRKKNILLLNKADLLTEEQ--------------- 59 (141)
T ss_pred HHhhCCEEEEEEEccCCc--------ccCCHHHHHHHHh----c-cCCCcEEEEEechhcCCHHH---------------
Confidence 357899999999987611 1111122222221 1 14689999999999854221
Q ss_pred CcchhHHHHHHhhhccceeeccccccccee
Q psy6623 202 RPGERNRMQESLKLFDSICNNKWFTDTSII 231 (262)
Q Consensus 202 ~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I 231 (262)
.....+.+......++++||.++.+.
T Consensus 60 ----~~~~~~~~~~~~~~ii~iSa~~~~~~ 85 (141)
T cd01857 60 ----RKAWAEYFKKEGIVVVFFSALKENAT 85 (141)
T ss_pred ----HHHHHHHHHhcCCeEEEEEecCCCcE
Confidence 01111222222345678999988863
No 282
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.96 E-value=0.0012 Score=66.62 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=52.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++.||+|+..|-.-.....+.++++|+|+|.++ .-.......|+.+.. .+.|++|+.||+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~-----------Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------GVCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC-----------CCcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence 5678999999999987777777899999999999885 212233445655543 3689999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 283
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.95 E-value=0.0015 Score=54.21 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=38.8
Q ss_pred cceeeeecCCccccchhhhc-----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSERKKWIH-----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~-----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
..+.+||++|.......-.. .+.+++.+|+|.+ .++.+.-..+...+.. .+.|+++|+
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--------------~~~~~~d~~~~~~l~~---~~~~~ilV~ 114 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--------------TRFSSNDVKLAKAIQC---MGKKFYFVR 114 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--------------CCCCHHHHHHHHHHHH---hCCCEEEEE
Confidence 46899999998542221122 2678888888743 2233333333333332 157999999
Q ss_pred eCCchh
Q psy6623 177 NKKDLF 182 (262)
Q Consensus 177 NK~Dl~ 182 (262)
||+|+.
T Consensus 115 nK~D~~ 120 (197)
T cd04104 115 TKVDRD 120 (197)
T ss_pred ecccch
Confidence 999984
No 284
>KOG0458|consensus
Probab=96.94 E-value=0.0038 Score=59.07 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=81.0
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|..+....|+-+...+++.|.+|++-|-.-...--..+++.|+|+|++- +..-.--+......|-..+++.+
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L----- 313 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL----- 313 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-----
Confidence 334444555666677889999999998887766666667899999999983 32222212234455555554443
Q ss_pred CCCCeEEEEeeCCchhh---hhhccCCCcccCCCCCCCCcch-hHHHHH--Hhhhccceeecccccccceeeee
Q psy6623 167 FTDTSIILFLNKKDLFE---EKIKKSPLTICFPEYAGKRPGE-RNRMQE--SLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~---~kl~~~~l~~~fp~~~g~~~~~-~~~i~~--~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
.-..++|+.||+|+-+ +|... +. .. ..|+.+ .|.+..+.+.++|+..|+|+-..
T Consensus 314 -gi~qlivaiNKmD~V~Wsq~RF~e--Ik-----------~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 314 -GISQLIVAINKMDLVSWSQDRFEE--IK-----------NKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -CcceEEEEeecccccCccHHHHHH--HH-----------HHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3457899999999853 11100 00 00 233322 34556788999999999998765
No 285
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.92 E-value=0.005 Score=46.28 Aligned_cols=70 Identities=27% Similarity=0.438 Sum_probs=44.6
Q ss_pred eeEEEEeeeccceeeeecCCcccc---------chhhhccccCCCEEEEeeeccccccccccCcccccHHH-HHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSE---------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE-SLKLFDSI 161 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~---------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e-~~~~~~~i 161 (262)
.....+.+++..+.++||+|-... ........+.++++|||+|.++ ...+ ...+++.+
T Consensus 37 ~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l 104 (116)
T PF01926_consen 37 PVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL 104 (116)
T ss_dssp EEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH
T ss_pred eeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH
Confidence 333455667888899999996431 1112223388999999999554 2222 23333444
Q ss_pred HhCCCCCCCeEEEEeeC
Q psy6623 162 CNNKWFTDTSIILFLNK 178 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK 178 (262)
+ .+.|+++|+||
T Consensus 105 -~----~~~~~i~v~NK 116 (116)
T PF01926_consen 105 -K----NKKPIILVLNK 116 (116)
T ss_dssp -H----TTSEEEEEEES
T ss_pred -h----cCCCEEEEEcC
Confidence 2 57899999998
No 286
>PRK09866 hypothetical protein; Provisional
Probab=96.90 E-value=0.0027 Score=61.32 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=63.0
Q ss_pred cceeeeecCCcccc--c---hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSE--R---KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~--r---~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
..+.+.||+|-..- + ..-....+++++||||+|... .....+ ....+.+.. ..++.|++++.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIlk~Lkk--~~K~~PVILVV 296 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVREAILA--VGQSVPLYVLV 296 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHHHHHHh--cCCCCCEEEEE
Confidence 67889999997542 1 123346889999999999765 111111 122222221 11236999999
Q ss_pred eCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh---ccceeecccccccceeeeeeh
Q psy6623 177 NKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL---FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 177 NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~ 236 (262)
||+|+.++. .. .... ..++...+.. ..--++++||+.|.|+..+.+
T Consensus 297 NKIDl~dre--ed------------dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 297 NKFDQQDRN--SD------------DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred EcccCCCcc--cc------------hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Confidence 999984310 00 0001 3344322221 122478899999999988875
No 287
>COG2262 HflX GTPases [General function prediction only]
Probab=96.85 E-value=0.0017 Score=59.13 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=68.3
Q ss_pred ccceeEEEEeee-ccceeeeecCCccccchhhh-ccc-------cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWI-HCF-------EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 89 T~Gi~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~-~~f-------~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
|..-....+.+. +..+-+-||-|=-+.-.-|. .-| ..+|.+|.|+|.|+ . ...+-++.-.
T Consensus 226 TLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSd----------p-~~~~~~~~v~ 294 (411)
T COG2262 226 TLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASD----------P-EILEKLEAVE 294 (411)
T ss_pred cccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCC----------h-hHHHHHHHHH
Confidence 333334555554 56788889998433222121 112 46999999999998 2 3333333344
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++..-...+.|+|+++||+|+.........+... .+ ...++||++|.|++.+...
T Consensus 295 ~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~---------------------~~-~~v~iSA~~~~gl~~L~~~ 350 (411)
T COG2262 295 DVLAEIGADEIPIILVLNKIDLLEDEEILAELERG---------------------SP-NPVFISAKTGEGLDLLRER 350 (411)
T ss_pred HHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc---------------------CC-CeEEEEeccCcCHHHHHHH
Confidence 44443334569999999999976432111111110 01 2567999999999887753
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.84 E-value=0.00043 Score=59.49 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=57.1
Q ss_pred ceeeeecCCccccchhhhccc--------cCCCEEEEeeeccccccccccCcccccH-HHHHHHHHHHHhCCCCCCCeEE
Q psy6623 103 NFKLFDVGGQRSERKKWIHCF--------EDVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f--------~~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~~~i~~~~~~~~~pii 173 (262)
.+-++||+||-+.-..|...- ...-++++++|.+-... ...+ ...+.-+..+++ -+.|.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~-------~~~f~s~~L~s~s~~~~----~~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD-------PSKFVSSLLLSLSIMLR----LELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS-------HHHHHHHHHHHHHHHHH----HTSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC-------hhhHHHHHHHHHHHHhh----CCCCEE
Confidence 677999999988777665544 55678999999886221 1122 222222222332 268999
Q ss_pred EEeeCCchhhhhhccCCCcccCCCCCCCCc-----ch--hHHHHHHhhh-ccc-eeecccccccceeeeeehh
Q psy6623 174 LFLNKKDLFEEKIKKSPLTICFPEYAGKRP-----GE--RNRMQESLKL-FDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 174 l~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~-----~~--~~~i~~~f~~-~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.++||+|+..+.... ..+++.+...-.. .. ..-+...+.+ ..+ .++..|+++++++..++..
T Consensus 161 nvlsK~Dl~~~~~~~--~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~ 231 (238)
T PF03029_consen 161 NVLSKIDLLSKYLEF--ILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA 231 (238)
T ss_dssp EEE--GGGS-HHHHH--HHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred EeeeccCcccchhHH--HHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence 999999998743111 1111111100000 00 0111111111 223 5788999999999988853
No 289
>PRK13796 GTPase YqeH; Provisional
Probab=96.79 E-value=0.0012 Score=60.32 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred cCCC-EEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC
Q psy6623 124 EDVT-AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR 202 (262)
Q Consensus 124 ~~~~-~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~ 202 (262)
...+ .|++|+|+.++. .++ ...+.... .+.|+++++||+||.........+
T Consensus 67 ~~~~~lIv~VVD~~D~~---------~s~---~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i----------- 118 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN---------GSW---IPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKV----------- 118 (365)
T ss_pred cccCcEEEEEEECccCC---------Cch---hHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHH-----------
Confidence 3344 889999998843 222 22233332 257899999999996421100000
Q ss_pred cchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 203 PGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 203 ~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++...+....+ .++.+||+++.||+++++.
T Consensus 119 ---~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~ 153 (365)
T PRK13796 119 ---KNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEA 153 (365)
T ss_pred ---HHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHH
Confidence 2333333332222 4678999999999988864
No 290
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.79 E-value=0.0042 Score=55.42 Aligned_cols=142 Identities=17% Similarity=0.205 Sum_probs=80.2
Q ss_pred HHHhhccccCCCCCCcCcccccee-eecccceeEEEEeeeccceeeeecCCccccch-------hhhccccCCCEEEEee
Q psy6623 62 YFLDDLDRLGAKEYQPTEQDILRT-RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCV 133 (262)
Q Consensus 62 yfl~~l~ri~~~~y~pt~~Dil~~-~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~ 133 (262)
.|++.+.+ -+|.+.|.--+ -.|..|+... ..+-.|.+=|++|--.-.+ ....+.+.+..+++|+
T Consensus 174 Tlls~vS~-----AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hvi 245 (369)
T COG0536 174 TLLSAVSA-----AKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVI 245 (369)
T ss_pred HHHHHHhh-----cCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEE
Confidence 56665443 23444333222 2677786543 3456688899987522111 2233457789999999
Q ss_pred eccccccccccCcccccHHHHHHHHHHHHh-CCCCCCCeEEEEeeCCchhh--hhhccCCCcccCCCCCCCCcchhHHHH
Q psy6623 134 AMSEYDQVLHEDETTNRMQESLKLFDSICN-NKWFTDTSIILFLNKKDLFE--EKIKKSPLTICFPEYAGKRPGERNRMQ 210 (262)
Q Consensus 134 dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~~~~~piil~~NK~Dl~~--~kl~~~~l~~~fp~~~g~~~~~~~~i~ 210 (262)
|++..+. .+-.++...+..++-. ++.+.+.|.+|++||+|+.. +.+.. + .+++.
T Consensus 246 D~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~--~--------------~~~l~ 302 (369)
T COG0536 246 DLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEE--L--------------KKALA 302 (369)
T ss_pred ecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHH--H--------------HHHHH
Confidence 9998432 1223333333333333 25677899999999999542 21110 0 12222
Q ss_pred HHhhhccceeec-ccccccceeeeeehh
Q psy6623 211 ESLKLFDSICNN-KWFTDTSIILFLNKK 237 (262)
Q Consensus 211 ~~f~~~~~~~~~-tsA~d~~~I~~~f~~ 237 (262)
+. ..+.... +||.++++++.+...
T Consensus 303 ~~---~~~~~~~~ISa~t~~g~~~L~~~ 327 (369)
T COG0536 303 EA---LGWEVFYLISALTREGLDELLRA 327 (369)
T ss_pred Hh---cCCCcceeeehhcccCHHHHHHH
Confidence 21 1222222 999999999988865
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.78 E-value=0.0019 Score=64.31 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=51.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+++.||+|+..+........+.+|++|+|+|... .-.......++..... +.|.+++.||+
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~-----------g~~~~t~~~~~~~~~~----~~~~iv~iNK~ 149 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-----------GVMPQTETVLRQALRE----RVKPVLFINKV 149 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC-----------CCCccHHHHHHHHHHc----CCCeEEEEECc
Confidence 36778999999999887777778899999999999775 1223344455544332 45778999999
Q ss_pred chhh
Q psy6623 180 DLFE 183 (262)
Q Consensus 180 Dl~~ 183 (262)
|+..
T Consensus 150 D~~~ 153 (731)
T PRK07560 150 DRLI 153 (731)
T ss_pred hhhc
Confidence 9864
No 292
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.67 E-value=0.0047 Score=57.03 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=27.1
Q ss_pred cceeeeecCCc----cccchhhhcc---ccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQ----RSERKKWIHC---FEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq----~~~r~~w~~~---f~~~~~iIfv~dls~ 137 (262)
..+++||++|. ...+.+-..+ +++++++++|+|++.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 66899999994 3334433344 799999999999983
No 293
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0061 Score=58.85 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=76.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccc------hhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSER------KKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|+--.+..+..++..+++.|++|--+.. +.-..|. .+.|.||-|+|.++ ++.++.+.-+
T Consensus 37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn-------------LeRnLyltlQ 103 (653)
T COG0370 37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN-------------LERNLYLTLQ 103 (653)
T ss_pred eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch-------------HHHHHHHHHH
Confidence 3334455566778889999999964432 2334444 45799999999887 4555666666
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.+- +.|+++++|+.|..+++-..-+. +-+.+ ...+.+..|+|+.|+|++++.++
T Consensus 104 LlE~----g~p~ilaLNm~D~A~~~Gi~ID~---------------~~L~~---~LGvPVv~tvA~~g~G~~~l~~~ 158 (653)
T COG0370 104 LLEL----GIPMILALNMIDEAKKRGIRIDI---------------EKLSK---LLGVPVVPTVAKRGEGLEELKRA 158 (653)
T ss_pred HHHc----CCCeEEEeccHhhHHhcCCcccH---------------HHHHH---HhCCCEEEEEeecCCCHHHHHHH
Confidence 6542 68899999999997653222111 11111 14578899999999999888764
No 294
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.35 E-value=0.0068 Score=48.20 Aligned_cols=51 Identities=25% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++++||+|+..+.. + ..++ ..+.. ....++.+||+++.++.++.+.
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~----~--------------~~~~-~~~~~~~~~~ii~vSa~~~~gi~~L~~~ 79 (155)
T cd01849 28 KGKKLILVLNKADLVPKEV----L--------------RKWL-AYLRHSYPTIPFKISATNGQGIEKKESA 79 (155)
T ss_pred CCCCEEEEEechhcCCHHH----H--------------HHHH-HHHHhhCCceEEEEeccCCcChhhHHHH
Confidence 3689999999999853210 0 1111 11111 1233577999999999888863
No 295
>KOG1532|consensus
Probab=96.29 E-value=0.0069 Score=52.62 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=65.1
Q ss_pred cceeeeecCCccccchhhhc-------cc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 102 LNFKLFDVGGQRSERKKWIH-------CF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~-------~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
.++.+.||+||-. --.|.. -+ ....+|+||+|...- .+...+-..+-.-.+++- -.+.|+
T Consensus 116 ~~~~liDTPGQIE-~FtWSAsGsIIte~lass~ptvv~YvvDt~rs-------~~p~tFMSNMlYAcSily---ktklp~ 184 (366)
T KOG1532|consen 116 FDYVLIDTPGQIE-AFTWSASGSIITETLASSFPTVVVYVVDTPRS-------TSPTTFMSNMLYACSILY---KTKLPF 184 (366)
T ss_pred cCEEEEcCCCceE-EEEecCCccchHhhHhhcCCeEEEEEecCCcC-------CCchhHHHHHHHHHHHHH---hccCCe
Confidence 4567778888732 112321 11 235678899997751 122334333333334432 246899
Q ss_pred EEEeeCCchhhhhhccC---C---CcccC----CCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKS---P---LTICF----PEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~---~---l~~~f----p~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+++||+|+.+...... + +.... .+|-++-...+......|- +.+....+||.+|.|....|.+
T Consensus 185 ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY-~~lrtv~VSs~tG~G~ddf~~a 258 (366)
T KOG1532|consen 185 IVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY-RSLRTVGVSSVTGEGFDDFFTA 258 (366)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH-hhCceEEEecccCCcHHHHHHH
Confidence 99999999865432211 0 00000 0010000000333333332 4566778999999999999975
No 296
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.28 E-value=0.012 Score=48.74 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=55.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccc-----------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSER-----------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r-----------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~ 156 (262)
.|..+......+++..+.+.||+|-.... +.+..+..+++++|||+++..+ ...-...++
T Consensus 35 ~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~ 105 (196)
T cd01852 35 VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVE 105 (196)
T ss_pred cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHH
Confidence 34455555666788899999999954321 1122345789999999998763 234455667
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.+.+++.... -.++++++|+.|...
T Consensus 106 ~l~~~fg~~~--~~~~ivv~T~~d~l~ 130 (196)
T cd01852 106 TLQELFGEKV--LDHTIVLFTRGDDLE 130 (196)
T ss_pred HHHHHhChHh--HhcEEEEEECccccC
Confidence 7766664322 247888899998654
No 297
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.0077 Score=55.41 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=56.6
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
++..|.+++..+++.||+|++-|..-.-.-.--+|++|.|+|... --=...+++| ++|. +.++||
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLf-eVcr---lR~iPI 136 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLF-EVCR---LRDIPI 136 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHH-HHHh---hcCCce
Confidence 456788899999999999999877655444557999999999874 2223445555 4553 578999
Q ss_pred EEEeeCCchh
Q psy6623 173 ILFLNKKDLF 182 (262)
Q Consensus 173 il~~NK~Dl~ 182 (262)
+-|.||.|..
T Consensus 137 ~TFiNKlDR~ 146 (528)
T COG4108 137 FTFINKLDRE 146 (528)
T ss_pred EEEeeccccc
Confidence 9999999963
No 298
>KOG1191|consensus
Probab=96.14 E-value=0.0083 Score=55.89 Aligned_cols=121 Identities=19% Similarity=0.193 Sum_probs=70.1
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh---------hccccCCCEEEEeeec--cccccccccCcccccHHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW---------IHCFEDVTAIIFCVAM--SEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w---------~~~f~~~~~iIfv~dl--s~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.-+..++++++++.+.||+|-+..+..- ..-.+.+|.|++|+|. +++ .+-....+.+..
T Consensus 306 aiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t----------~sd~~i~~~l~~ 375 (531)
T KOG1191|consen 306 AIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT----------ESDLKIARILET 375 (531)
T ss_pred hheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc----------ccchHHHHHHHH
Confidence 4567788999999999999987722211 1234679999999998 332 111111122222
Q ss_pred HHh-----CCCCCCCeEEEEeeCCchhhhhhccCCC-cccCCCCCCCCcchhHHHHHHhhhccceeec-ccccccceeee
Q psy6623 161 ICN-----NKWFTDTSIILFLNKKDLFEEKIKKSPL-TICFPEYAGKRPGERNRMQESLKLFDSICNN-KWFTDTSIILF 233 (262)
Q Consensus 161 i~~-----~~~~~~~piil~~NK~Dl~~~kl~~~~l-~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~-tsA~d~~~I~~ 233 (262)
.-. .+.....+++++.||.|+.. ++...+. -..+|.-.|. -...+|. +|++++++++.
T Consensus 376 ~~~g~~~~~~~~~~~~~i~~~nk~D~~s-~~~~~~~~~~~~~~~~~~--------------~~~~i~~~vs~~tkeg~~~ 440 (531)
T KOG1191|consen 376 EGVGLVVIVNKMEKQRIILVANKSDLVS-KIPEMTKIPVVYPSAEGR--------------SVFPIVVEVSCTTKEGCER 440 (531)
T ss_pred hccceEEEeccccccceEEEechhhccC-ccccccCCceeccccccC--------------cccceEEEeeechhhhHHH
Confidence 211 11124579999999999865 2221111 1111211121 1233454 99999999998
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+-.+
T Consensus 441 L~~a 444 (531)
T KOG1191|consen 441 LSTA 444 (531)
T ss_pred HHHH
Confidence 8764
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.13 E-value=0.0061 Score=45.76 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
......+++++++++.|++.++ .+++... |...+... .-.+.|+++++||.|+..
T Consensus 37 ~~~~~~~~~s~~~~~~v~~~~~----------~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 37 DVYDPTSYESFDVVLQCWRVDD----------RDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred hhccccccCCCCEEEEEEEccC----------HHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 3344667889999999999887 4444332 33333322 224688999999999854
No 300
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0098 Score=58.54 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=62.2
Q ss_pred eecccceeEEEEeeec-cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 86 RVKTTGIVEVHFSFKN-LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~-~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
|--|+.....++.+++ ..+++.||.|+--|-.--..-.+-+|++|.|+|..+ --...+...|+....
T Consensus 59 RGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~~QTEtv~rqa~~- 126 (697)
T COG0480 59 RGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVEPQTETVWRQADK- 126 (697)
T ss_pred cCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------CeeecHHHHHHHHhh-
Confidence 3444444555677785 999999999998877766667788999999999886 334445566666654
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.++|.++|.||+|...
T Consensus 127 ---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 127 ---YGVPRILFVNKMDRLG 142 (697)
T ss_pred ---cCCCeEEEEECccccc
Confidence 3799999999999754
No 301
>KOG1423|consensus
Probab=96.09 E-value=0.012 Score=51.97 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=69.0
Q ss_pred eeccceeeeecCCccccchhh------------hccccCCCEEEEeeeccccccccccCcccccHHH-HHHHHHHHHhCC
Q psy6623 99 FKNLNFKLFDVGGQRSERKKW------------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE-SLKLFDSICNNK 165 (262)
Q Consensus 99 ~~~~~~~i~D~~Gq~~~r~~w------------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e-~~~~~~~i~~~~ 165 (262)
-++..+-++||.|--.-.... .+-..++|+|+.|+|.++ +.+-++- .+..++..
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~y---- 183 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA---------TRTPLHPRVLHMLEEY---- 183 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC---------CcCccChHHHHHHHHH----
Confidence 366789999999953322211 123467999999999996 1222221 22222222
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc----------c----eeeccccccccee
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD----------S----ICNNKWFTDTSII 231 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~----------~----~~~~tsA~d~~~I 231 (262)
.+.|-+|+.||.|.+..|..--++..... +|.-+...--+.++|...+ | -++.+||+.|+||
T Consensus 184 --s~ips~lvmnkid~~k~k~~Ll~l~~~Lt--~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi 259 (379)
T KOG1423|consen 184 --SKIPSILVMNKIDKLKQKRLLLNLKDLLT--NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI 259 (379)
T ss_pred --hcCCceeeccchhcchhhhHHhhhHHhcc--ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence 46788999999998765533222221111 0100000223344555432 3 1678999999999
Q ss_pred eeeeh
Q psy6623 232 LFLNK 236 (262)
Q Consensus 232 ~~~f~ 236 (262)
+++=+
T Consensus 260 kdlkq 264 (379)
T KOG1423|consen 260 KDLKQ 264 (379)
T ss_pred HHHHH
Confidence 98874
No 302
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.08 E-value=0.004 Score=50.41 Aligned_cols=82 Identities=16% Similarity=-0.027 Sum_probs=47.0
Q ss_pred hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCC
Q psy6623 120 IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYA 199 (262)
Q Consensus 120 ~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~ 199 (262)
....+++|.|++|+|.++... ..-. ..... ..+.|+++++||+|+..+... ...
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~--------~~~~---~i~~~------~~~k~~ilVlNK~Dl~~~~~~-~~~-------- 67 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLS--------SRNP---LLEKI------LGNKPRIIVLNKADLADPKKT-KKW-------- 67 (171)
T ss_pred HHHHhhCCEEEEEeeccCccC--------cCCh---hhHhH------hcCCCEEEEEehhhcCChHHH-HHH--------
Confidence 345689999999999875210 0001 11111 134789999999998632100 000
Q ss_pred CCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 200 GKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 200 g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++.. ....++.+||+++.|++++.+.
T Consensus 68 ------~~~~~~----~~~~vi~iSa~~~~gi~~L~~~ 95 (171)
T cd01856 68 ------LKYFES----KGEKVLFVNAKSGKGVKKLLKA 95 (171)
T ss_pred ------HHHHHh----cCCeEEEEECCCcccHHHHHHH
Confidence 111111 1123567999999999887753
No 303
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.95 E-value=0.015 Score=45.86 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=56.8
Q ss_pred eeecCCccccchhhhc----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 106 LFDVGGQRSERKKWIH----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 106 i~D~~Gq~~~r~~w~~----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
+.||+|.--+.+.+-+ .-.+|+.|++|.|.++-... +.-. |.. .+ +.|+|=|.||+|+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~---------~pP~---fa~-----~f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSV---------FPPG---FAS-----MF-NKPVIGVITKIDL 101 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCcc---------CCch---hhc-----cc-CCCEEEEEECccC
Confidence 5899997555443322 33689999999999972211 1110 111 12 4799999999999
Q ss_pred h--hhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 182 F--EEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 182 ~--~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
. .+.+... .++++.-. -+. ++.+||.+|+||+++.+
T Consensus 102 ~~~~~~i~~a----------------~~~L~~aG-~~~--if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 102 PSDDANIERA----------------KKWLKNAG-VKE--IFEVSAVTGEGIEELKD 139 (143)
T ss_pred ccchhhHHHH----------------HHHHHHcC-CCC--eEEEECCCCcCHHHHHH
Confidence 8 3221110 12222111 033 48899999999998873
No 304
>KOG0468|consensus
Probab=95.76 E-value=0.015 Score=56.03 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=53.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
..-+++.||.|+-.+..-...-++-++++++|+|..+ .-+-..-.+++...+ .+.|++++.||.|
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq----~~~~i~vviNKiD 260 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQ----NRLPIVVVINKVD 260 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHh----ccCcEEEEEehhH
Confidence 3568999999999998877888899999999999986 333333444455544 3689999999999
Q ss_pred hhhh
Q psy6623 181 LFEE 184 (262)
Q Consensus 181 l~~~ 184 (262)
.+-.
T Consensus 261 RLil 264 (971)
T KOG0468|consen 261 RLIL 264 (971)
T ss_pred HHHH
Confidence 8643
No 305
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.042 Score=50.65 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=75.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+--|+.+....+..++..+.+.|+.|++.+-+--..-..+.+.+++|++..+ .-....-|.+..++.
T Consensus 34 RG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~de--------Gl~~qtgEhL~iLdl----- 100 (447)
T COG3276 34 RGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADE--------GLMAQTGEHLLILDL----- 100 (447)
T ss_pred cCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCcc--------CcchhhHHHHHHHHh-----
Confidence 4455556666666677799999999999876655555668999999999854 002233333333322
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.....+++++|+|..++...... ++-|.....-....++.+||++|+||.++=+.
T Consensus 101 -lgi~~giivltk~D~~d~~r~e~~---------------i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 101 -LGIKNGIIVLTKADRVDEARIEQK---------------IKQILADLSLANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred -cCCCceEEEEeccccccHHHHHHH---------------HHHHHhhcccccccccccccccCCCHHHHHHH
Confidence 344567899999999754210000 11111111112344578999999999888764
No 306
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.39 E-value=0.019 Score=47.95 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=54.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE--EEEeeCC
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI--ILFLNKK 179 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi--il~~NK~ 179 (262)
....+.++.|..--...+. .-++++|.|+|..+.++. .. ... ..+.+ ++++||+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~----------~~---~~~--------~qi~~ad~~~~~k~ 147 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKI----------PR---KGG--------PGITRSDLLVINKI 147 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhh----------hh---hhH--------hHhhhccEEEEEhh
Confidence 3444666666322222221 125779999999885432 10 000 12233 7889999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh--hccceeecccccccceeeeeehhhHHHhh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK--LFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~--~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
|+.+.. ... ...+.+..+ +....+++|||++|+||.++|+ ++.+.
T Consensus 148 d~~~~~--~~~---------------~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~--~i~~~ 194 (199)
T TIGR00101 148 DLAPMV--GAD---------------LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVID--WIEHY 194 (199)
T ss_pred hccccc--ccc---------------HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHH--HHHhh
Confidence 996410 000 111222111 1345678999999999999994 55543
No 307
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.96 E-value=0.021 Score=50.05 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=46.2
Q ss_pred ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCC
Q psy6623 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200 (262)
Q Consensus 121 ~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g 200 (262)
...+.+|.||+|+|..+-. ..-. ..+...+ .+.|+++|+||+|+..+.. ....
T Consensus 17 ~~l~~aDvVl~V~Dar~p~---------~~~~---~~i~~~l-----~~kp~IiVlNK~DL~~~~~-~~~~--------- 69 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARIPL---------SSRN---PMIDEIR-----GNKPRLIVLNKADLADPAV-TKQW--------- 69 (276)
T ss_pred HHHhhCCEEEEEEeCCCCC---------CCCC---hhHHHHH-----CCCCEEEEEEccccCCHHH-HHHH---------
Confidence 4568899999999986510 1111 1112222 2579999999999853210 0000
Q ss_pred CCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 201 KRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 201 ~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++.+ ....+..+||+++.++..+.+.
T Consensus 70 -----~~~~~~----~~~~vi~iSa~~~~gi~~L~~~ 97 (276)
T TIGR03596 70 -----LKYFEE----KGIKALAINAKKGKGVKKIIKA 97 (276)
T ss_pred -----HHHHHH----cCCeEEEEECCCcccHHHHHHH
Confidence 112211 1233567889999888877653
No 308
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.88 E-value=0.096 Score=44.45 Aligned_cols=66 Identities=11% Similarity=0.154 Sum_probs=40.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-IILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-iil~~NK 178 (262)
++.++.+.|++|.- .... ...+.++++++|+|.+. .-. ......+..+. . .+.| +++++||
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~----------~~~-~~~~~i~~~l~-~---~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASF----------GFE-METFEFLNILQ-V---HGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCc----------CCC-HHHHHHHHHHH-H---cCCCeEEEEEec
Confidence 56788999999864 2222 23578999999999875 111 11222333222 2 2356 4569999
Q ss_pred Cchhh
Q psy6623 179 KDLFE 183 (262)
Q Consensus 179 ~Dl~~ 183 (262)
.|+..
T Consensus 143 ~D~~~ 147 (225)
T cd01882 143 LDLFK 147 (225)
T ss_pred cccCC
Confidence 99863
No 309
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.87 E-value=0.035 Score=48.97 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=46.4
Q ss_pred ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCC
Q psy6623 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAG 200 (262)
Q Consensus 121 ~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g 200 (262)
...+.+|.||+|+|..+.. ..+- ..+...+ .+.|+++++||+|+..+.. ....
T Consensus 20 ~~l~~aDvIL~VvDar~p~--------~~~~----~~l~~~~-----~~kp~iiVlNK~DL~~~~~-~~~~--------- 72 (287)
T PRK09563 20 ENLKLVDVVIEVLDARIPL--------SSEN----PMIDKII-----GNKPRLLILNKSDLADPEV-TKKW--------- 72 (287)
T ss_pred HHhhhCCEEEEEEECCCCC--------CCCC----hhHHHHh-----CCCCEEEEEEchhcCCHHH-HHHH---------
Confidence 3467899999999986511 0111 1222222 2578999999999853210 0000
Q ss_pred CCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 201 KRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 201 ~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++. .....+..+||+++.++..+.+.
T Consensus 73 -----~~~~~----~~~~~vi~vSa~~~~gi~~L~~~ 100 (287)
T PRK09563 73 -----IEYFE----EQGIKALAINAKKGQGVKKILKA 100 (287)
T ss_pred -----HHHHH----HcCCeEEEEECCCcccHHHHHHH
Confidence 11221 12234567888888888877653
No 310
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.84 E-value=0.042 Score=45.92 Aligned_cols=53 Identities=9% Similarity=-0.086 Sum_probs=32.7
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..|.++++||+|+..+.- ..+... ...+.... ....++.+||++|.||.++|+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~--~~~~~~-----------~~~l~~~~--~~~~i~~~Sa~~g~gv~~l~~ 200 (207)
T TIGR00073 148 KEADLIVINKADLAEAVG--FDVEKM-----------KADAKKIN--PEAEIILMSLKTGEGLDEWLE 200 (207)
T ss_pred hhCCEEEEEHHHccccch--hhHHHH-----------HHHHHHhC--CCCCEEEEECCCCCCHHHHHH
Confidence 467799999999864210 000000 22222211 336689999999999999995
No 311
>COG0218 Predicted GTPase [General function prediction only]
Probab=94.73 E-value=0.11 Score=43.24 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=56.4
Q ss_pred eeeeecCCc------cccchhh----hcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 104 FKLFDVGGQ------RSERKKW----IHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 104 ~~i~D~~Gq------~~~r~~w----~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
+.+.|++|- ...+..| ..|++ +..+++.++|+-.. .... -.+.++-+.. .+.
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~---------~~~~--D~em~~~l~~----~~i 136 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP---------PKDL--DREMIEFLLE----LGI 136 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC---------CcHH--HHHHHHHHHH----cCC
Confidence 789999983 3445566 44664 36677888887641 1111 1123322322 368
Q ss_pred eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeeh
Q psy6623 171 SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 171 piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|++|++||+|-.. .....+ ....+.+.+.- ..+ +..+|+..+.||+++-+
T Consensus 137 ~~~vv~tK~DKi~----~~~~~k-----------~l~~v~~~l~~~~~~~~~-~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 137 PVIVVLTKADKLK----KSERNK-----------QLNKVAEELKKPPPDDQW-VVLFSSLKKKGIDELKA 190 (200)
T ss_pred CeEEEEEccccCC----hhHHHH-----------HHHHHHHHhcCCCCccce-EEEEecccccCHHHHHH
Confidence 9999999999654 111100 02233322211 222 66778888888777664
No 312
>PRK01889 GTPase RsgA; Reviewed
Probab=94.36 E-value=0.087 Score=47.98 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=44.2
Q ss_pred cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCC
Q psy6623 122 CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK 201 (262)
Q Consensus 122 ~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~ 201 (262)
...|+|.+++|+++.. +.+...++..+ ..+. ..+++.+|++||+||..+. .. .
T Consensus 109 iaANvD~vliV~s~~p-------~~~~~~ldr~L----~~a~---~~~i~piIVLNK~DL~~~~-~~--~---------- 161 (356)
T PRK01889 109 IAANVDTVFIVCSLNH-------DFNLRRIERYL----ALAW---ESGAEPVIVLTKADLCEDA-EE--K---------- 161 (356)
T ss_pred EEEeCCEEEEEEecCC-------CCChhHHHHHH----HHHH---HcCCCEEEEEEChhcCCCH-HH--H----------
Confidence 3578999999999852 11112222222 2222 1357778999999996421 00 0
Q ss_pred CcchhHHHHHHhhhccceeecccccccceeeeee
Q psy6623 202 RPGERNRMQESLKLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 202 ~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f 235 (262)
.+.+.+. .....++.+||+++.++..+.
T Consensus 162 ----~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~ 189 (356)
T PRK01889 162 ----IAEVEAL--APGVPVLAVSALDGEGLDVLA 189 (356)
T ss_pred ----HHHHHHh--CCCCcEEEEECCCCccHHHHH
Confidence 1111111 122445678888888876654
No 313
>KOG0705|consensus
Probab=94.07 E-value=0.078 Score=50.24 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=85.3
Q ss_pred ccccCCCCCCcCccccceeeecccc-eeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeecccccccccc
Q psy6623 67 LDRLGAKEYQPTEQDILRTRVKTTG-IVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHE 144 (262)
Q Consensus 67 l~ri~~~~y~pt~~Dil~~~~pT~G-i~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e 144 (262)
+.|+....|.+.+ .|--| +..+.+.. +..-+.+.|.||.. -..|-..++++|||+.+-+
T Consensus 47 vhr~ltgty~~~e-------~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d------- 107 (749)
T KOG0705|consen 47 VHRYLTGTYTQDE-------SPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVED------- 107 (749)
T ss_pred eeeeccceecccc-------CCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEecc-------
Confidence 6777788888755 44444 22222222 44667889998832 2346678999999999988
Q ss_pred CcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccc
Q psy6623 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKW 224 (262)
Q Consensus 145 ~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~ts 224 (262)
.++++....+...+.....-...|+++++.+.-. ..+....... ....+...+ .+++.+++||
T Consensus 108 ---~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i-S~~~~rv~~d-----------a~~r~l~~~--~krcsy~et~ 170 (749)
T KOG0705|consen 108 ---EQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI-SAKRPRVITD-----------DRARQLSAQ--MKRCSYYETC 170 (749)
T ss_pred ---ccCHHHHHHHHhhcccccccccchHHhhcCcchh-hcccccccch-----------HHHHHHHHh--cCccceeecc
Confidence 6777777666666665544556788888775433 2221111110 001111111 1668899999
Q ss_pred ccccceeeeeehh
Q psy6623 225 FTDTSIILFLNKK 237 (262)
Q Consensus 225 A~d~~~I~~~f~~ 237 (262)
|+.|.++..+|+.
T Consensus 171 atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 171 ATYGLNVERVFQE 183 (749)
T ss_pred hhhhhhHHHHHHH
Confidence 9999999999986
No 314
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=94.05 E-value=0.12 Score=41.09 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=41.7
Q ss_pred cceeeeecCCccc----cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEee
Q psy6623 102 LNFKLFDVGGQRS----ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 102 ~~~~i~D~~Gq~~----~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~N 177 (262)
..+.+.|++|-.. ....+..|.+.++++|||++.+. .-.-.+ ...+...... ....+++|.|
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~----------~~~~~~-~~~l~~~~~~---~~~~~i~V~n 166 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQ----------DLTESD-MEFLKQMLDP---DKSRTIFVLN 166 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTS----------TGGGHH-HHHHHHHHTT---TCSSEEEEEE
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCc----------ccchHH-HHHHHHHhcC---CCCeEEEEEc
Confidence 5688999999733 34678889999999999999876 122222 3334444432 2233888889
Q ss_pred CC
Q psy6623 178 KK 179 (262)
Q Consensus 178 K~ 179 (262)
|.
T Consensus 167 k~ 168 (168)
T PF00350_consen 167 KA 168 (168)
T ss_dssp -G
T ss_pred CC
Confidence 84
No 315
>KOG0464|consensus
Probab=93.84 E-value=0.042 Score=50.39 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=60.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+.-.-..|.+++..+++.||.|+-.||---..|.+-.+|++.|+|.|. .--...+..|+..-. -
T Consensus 89 tiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasa-----------gve~qtltvwrqadk----~ 153 (753)
T KOG0464|consen 89 TIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA-----------GVEAQTLTVWRQADK----F 153 (753)
T ss_pred eeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC-----------Ccccceeeeehhccc----c
Confidence 3333345677899999999999999999989999999999999999986 222333444544322 3
Q ss_pred CCeEEEEeeCCchhh
Q psy6623 169 DTSIILFLNKKDLFE 183 (262)
Q Consensus 169 ~~piil~~NK~Dl~~ 183 (262)
+.|-+.|.||+|...
T Consensus 154 ~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 154 KIPAHCFINKMDKLA 168 (753)
T ss_pred CCchhhhhhhhhhhh
Confidence 688999999999765
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.61 E-value=0.091 Score=47.37 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=57.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.|.||+|-..... ....-+|.+++|++... ...+...+. .++. ..-++|.||.
T Consensus 147 ~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~----------gd~iq~~k~---gi~E------~aDIiVVNKa 204 (332)
T PRK09435 147 AGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGA----------GDELQGIKK---GIME------LADLIVINKA 204 (332)
T ss_pred cCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCc----------hHHHHHHHh---hhhh------hhheEEeehh
Confidence 467889999999763322 24567999999875222 233332221 1221 1227899999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-... . ...+...+.- ....++.+||++|+||.++++.
T Consensus 205 Dl~~~~~a~~-~--------------~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~ 254 (332)
T PRK09435 205 DGDNKTAARR-A--------------AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQA 254 (332)
T ss_pred cccchhHHHH-H--------------HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHH
Confidence 9864210000 0 1122222211 1124778999999999999974
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.15 E-value=0.25 Score=42.51 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=43.3
Q ss_pred cceeeeecCCccc-------------cchhhhccccCC-CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 102 LNFKLFDVGGQRS-------------ERKKWIHCFEDV-TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 102 ~~~~i~D~~Gq~~-------------~r~~w~~~f~~~-~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
..|.+.|++|-.. .+.+-..|.++. +.|++|+|... .-.-.+++++.+.+- .
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~----------d~~~~d~l~ia~~ld----~ 190 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV----------DLANSDALKLAKEVD----P 190 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC----------CCCchhHHHHHHHHH----H
Confidence 6799999999742 122445577754 57888888653 111123344444332 1
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
...++++|+||.|...
T Consensus 191 ~~~rti~ViTK~D~~~ 206 (240)
T smart00053 191 QGERTIGVITKLDLMD 206 (240)
T ss_pred cCCcEEEEEECCCCCC
Confidence 3689999999999865
No 318
>KOG0461|consensus
Probab=92.85 E-value=0.15 Score=45.90 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=60.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.+.|+.|+.+.-+-...--.=.|..|+|+|+..=- .....|.+-+=+-.| .-.+|+.||+|
T Consensus 69 ~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~--------QtQtAEcLiig~~~c-------~klvvvinkid 133 (522)
T KOG0461|consen 69 QLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGK--------QTQTAECLIIGELLC-------KKLVVVINKID 133 (522)
T ss_pred cceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccc--------ccccchhhhhhhhhc-------cceEEEEeccc
Confidence 367899999998654332222222245668899987621 123334433333332 23577788888
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeeccccccc----ceeeeeehhhHHHhhc
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDT----SIILFLNKKDLFEEKI 244 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~----~~I~~~f~~~lL~~~i 244 (262)
+..|.-..+.+.+. .+-+++.... ....+.++||++| +.|.++- ..|+..+
T Consensus 134 ~lpE~qr~ski~k~-----------~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~--e~l~s~i 192 (522)
T KOG0461|consen 134 VLPENQRASKIEKS-----------AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELK--EALESRI 192 (522)
T ss_pred cccchhhhhHHHHH-----------HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHH--HHHHHhh
Confidence 87652222222110 1222222222 2366788999999 5555554 3344444
No 319
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=92.83 E-value=0.3 Score=40.94 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=51.8
Q ss_pred ccceeEEEEeeeccceeeeecCCcccc-------chhh----hccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSE-------RKKW----IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~-------r~~w----~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
|.........+++..+.++||+|--.- .... ..+..+.+++|+|+.+..+ ...-...+++
T Consensus 36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~---------t~~~~~~l~~ 106 (212)
T PF04548_consen 36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF---------TEEDREVLEL 106 (212)
T ss_dssp -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHH
T ss_pred ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc---------hHHHHHHHHH
Confidence 444555566778899999999994211 1111 1245689999999998865 3455677788
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+..++...... .++|+++..|.+.
T Consensus 107 l~~~FG~~~~k--~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 107 LQEIFGEEIWK--HTIVVFTHADELE 130 (212)
T ss_dssp HHHHHCGGGGG--GEEEEEEEGGGGT
T ss_pred HHHHccHHHHh--HhhHHhhhccccc
Confidence 88888654433 4677778777654
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.60 E-value=0.12 Score=45.81 Aligned_cols=104 Identities=8% Similarity=-0.066 Sum_probs=54.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+-|.||+|-.. ......+.++.++++..... . .+.......+ .+.|.++++||+
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~----------~---~el~~~~~~l------~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT----------G---DDLQGIKAGL------MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc----------c---HHHHHHHHHH------hhhccEEEEEcc
Confidence 467889999998431 11234556777776643221 1 2211111222 356779999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccc--eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDS--ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~--~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-.. ..... ...-...+.. ..| .++.+||++++||.++++.
T Consensus 183 Dl~~~~~~~-~~~~~-----------~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~ 232 (300)
T TIGR00750 183 DGEGATNVT-IARLM-----------LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDA 232 (300)
T ss_pred cccchhHHH-HHHHH-----------HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHH
Confidence 987431000 00000 0000011111 122 3688999999999999964
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.14 Score=45.12 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=51.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
--|+......++..+-.+...|+.|+..|-+.-..--...|+.|+|++.+| --+....+.. ++ ..
T Consensus 60 GITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~d-----------GpmPqTrEHi--Ll-ar- 124 (394)
T COG0050 60 GITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHI--LL-AR- 124 (394)
T ss_pred CceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCC-----------CCCCcchhhh--hh-hh-
Confidence 334433344445567788899999998887666655567899999999987 1122222211 11 11
Q ss_pred CCCC-eEEEEeeCCchhh
Q psy6623 167 FTDT-SIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~-piil~~NK~Dl~~ 183 (262)
.-.+ -|++|+||+|+.+
T Consensus 125 qvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 125 QVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred hcCCcEEEEEEecccccC
Confidence 1244 5778889999975
No 322
>KOG3905|consensus
Probab=92.29 E-value=0.99 Score=40.49 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++|++||.+|+|...- +... -+|.... .+||....+. ..-..++||++.+.||+.+.+.
T Consensus 222 Gi~vlVV~TK~D~~s~-leke------~eyrDeh---fdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSV-LEKE------HEYRDEH---FDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred CCcEEEEEeccchhhH-hhhc------chhhHHH---HHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 5799999999998431 1111 0121111 5566554433 5566788999999999877753
No 323
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=91.73 E-value=0.72 Score=41.19 Aligned_cols=75 Identities=5% Similarity=0.200 Sum_probs=44.4
Q ss_pred eeeccceeeeecCCccccchhh-------hccc--cCCCEEEEeeeccccccccccCcccccH-HHHHHHHHHHHhCCCC
Q psy6623 98 SFKNLNFKLFDVGGQRSERKKW-------IHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLFDSICNNKWF 167 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~~r~~w-------~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~~~i~~~~~~ 167 (262)
..++.+++++||+|........ ..|. .+.+++|||..+.... .... ...++.+..++.....
T Consensus 82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R--------~~~~DkqlLk~Iqe~FG~~iw 153 (313)
T TIGR00991 82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR--------VDTLDGQVIRAITDSFGKDIW 153 (313)
T ss_pred EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc--------CCHHHHHHHHHHHHHhhhhhh
Confidence 3578899999999976432111 1111 2689999997665310 1111 3345555555533222
Q ss_pred CCCeEEEEeeCCchh
Q psy6623 168 TDTSIILFLNKKDLF 182 (262)
Q Consensus 168 ~~~piil~~NK~Dl~ 182 (262)
.+++|++++.|..
T Consensus 154 --~~~IVVfTh~d~~ 166 (313)
T TIGR00991 154 --RKSLVVLTHAQFS 166 (313)
T ss_pred --ccEEEEEECCccC
Confidence 3689999999964
No 324
>KOG3887|consensus
Probab=91.67 E-value=0.49 Score=40.67 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=50.8
Q ss_pred cceeeeecCCccccch---hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC--CCCCCCeEEEEe
Q psy6623 102 LNFKLFDVGGQRSERK---KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN--KWFTDTSIILFL 176 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~---~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~--~~~~~~piil~~ 176 (262)
+.|++||.+||-.+-. -....|+++-++|||+|.-+ .+.+++..+...+.. +...++.+=|+.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi 142 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI 142 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence 6789999999976422 22446899999999999864 455666555555432 234577888999
Q ss_pred eCCchhhh
Q psy6623 177 NKKDLFEE 184 (262)
Q Consensus 177 NK~Dl~~~ 184 (262)
.|.|-+.+
T Consensus 143 HKvDGLsd 150 (347)
T KOG3887|consen 143 HKVDGLSD 150 (347)
T ss_pred EeccCCch
Confidence 99998654
No 325
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.00 E-value=0.38 Score=42.97 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=66.0
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+.+.|..|++-.-.--.+--.=.||+|+|++..+ .++. ....|-+..++ ++ .-..++++-||.||-
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANE---pcPQ----PQT~EHl~Ale-Ii-----gik~iiIvQNKIDlV 153 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANE---PCPQ----PQTREHLMALE-II-----GIKNIIIVQNKIDLV 153 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCC---CCCC----CchHHHHHHHh-hh-----ccceEEEEeccccee
Confidence 46789999998654433332233689999999775 2222 22233333322 22 235689999999997
Q ss_pred hhhhccCCCcccCCCCCCCCcch--hHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+.-. ++. ++ .+|++.... -.-.+..+||..+.||+.++++ +++.+.
T Consensus 154 ~~E~A---lE~----------y~qIk~FvkGt~A-e~aPIIPiSA~~~~NIDal~e~--i~~~Ip 202 (415)
T COG5257 154 SRERA---LEN----------YEQIKEFVKGTVA-ENAPIIPISAQHKANIDALIEA--IEKYIP 202 (415)
T ss_pred cHHHH---HHH----------HHHHHHHhccccc-CCCceeeehhhhccCHHHHHHH--HHHhCC
Confidence 53211 111 11 333332221 2345678999999999999954 555554
No 326
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=90.20 E-value=1.2 Score=38.38 Aligned_cols=83 Identities=10% Similarity=0.151 Sum_probs=46.9
Q ss_pred ceeEEEEeeeccceeeeecCCccccc--hhh--------hcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSER--KKW--------IHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r--~~w--------~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
.........++.++++|||+|-.... ... ..|.. +.++++||..++.... ...-...++.+
T Consensus 68 ~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~-------~~~d~~llk~I 140 (249)
T cd01853 68 RVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR-------DYLDLPLLRAI 140 (249)
T ss_pred EEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC-------CHHHHHHHHHH
Confidence 33444445677889999999975441 101 12332 5788888876654110 01112344455
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
...+..... .+++|++||+|..
T Consensus 141 ~e~fG~~i~--~~~ivV~T~~d~~ 162 (249)
T cd01853 141 TDSFGPSIW--RNAIVVLTHAASS 162 (249)
T ss_pred HHHhChhhH--hCEEEEEeCCccC
Confidence 554432221 4689999999974
No 327
>COG1162 Predicted GTPases [General function prediction only]
Probab=90.13 E-value=0.73 Score=40.82 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=46.8
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCc
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRP 203 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~ 203 (262)
.+++-+|+|+++.+- +.+.+.+...+- ++. ..++.-+|++||+||..+.-..
T Consensus 78 ~n~d~~iiIvs~~~P------~~~~~~ldR~Lv----~ae---~~gi~pvIvlnK~DL~~~~~~~--------------- 129 (301)
T COG1162 78 ANNDQAIIVVSLVDP------DFNTNLLDRYLV----LAE---AGGIEPVIVLNKIDLLDDEEAA--------------- 129 (301)
T ss_pred cccceEEEEEeccCC------CCCHHHHHHHHH----HHH---HcCCcEEEEEEccccCcchHHH---------------
Confidence 346667777777761 112233333332 222 2456667779999997531100
Q ss_pred chhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 204 GERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 204 ~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+-....+.+-.+....+||++++++.++..
T Consensus 130 --~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~ 160 (301)
T COG1162 130 --VKELLREYEDIGYPVLFVSAKNGDGLEELAE 160 (301)
T ss_pred --HHHHHHHHHhCCeeEEEecCcCcccHHHHHH
Confidence 0112222333556778899999998887774
No 328
>KOG0465|consensus
Probab=89.88 E-value=0.66 Score=44.71 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=51.7
Q ss_pred EEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII 173 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii 173 (262)
-..+.+++.++++.||+|+-.|----..-.+-.+|.|.|++... --...+...|+.+.. .++|.+
T Consensus 96 At~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-----------GVqsQt~tV~rQ~~r----y~vP~i 160 (721)
T KOG0465|consen 96 ATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-----------GVESQTETVWRQMKR----YNVPRI 160 (721)
T ss_pred eeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-----------ceehhhHHHHHHHHh----cCCCeE
Confidence 34566788999999999996653333334556777777777654 333445566666653 379999
Q ss_pred EEeeCCchhh
Q psy6623 174 LFLNKKDLFE 183 (262)
Q Consensus 174 l~~NK~Dl~~ 183 (262)
-|.||+|...
T Consensus 161 ~FiNKmDRmG 170 (721)
T KOG0465|consen 161 CFINKMDRMG 170 (721)
T ss_pred EEEehhhhcC
Confidence 9999999743
No 329
>KOG0467|consensus
Probab=89.31 E-value=0.69 Score=45.63 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=58.0
Q ss_pred cccceeEEE----EeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 88 KTTGIVEVH----FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 88 pT~Gi~~~~----~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.|.||.... ...++..+++.|++|+-.|.+--..--+=+|+.+..+|..+ ---......+++.
T Consensus 54 q~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvve-----------gv~~qt~~vlrq~-- 120 (887)
T KOG0467|consen 54 QTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVE-----------GVCSQTYAVLRQA-- 120 (887)
T ss_pred hhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecc-----------ccchhHHHHHHHH--
Confidence 456665433 22377889999999999988877777778999999999875 1112233333333
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhc
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIK 187 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~ 187 (262)
|..+...+|+.||+|.+.-+++
T Consensus 121 --~~~~~~~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 121 --WIEGLKPILVINKIDRLITELK 142 (887)
T ss_pred --HHccCceEEEEehhhhHHHHHh
Confidence 3345667889999996554443
No 330
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=88.84 E-value=0.45 Score=38.70 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.2
Q ss_pred CCeEEEEeeCCchhh
Q psy6623 169 DTSIILFLNKKDLFE 183 (262)
Q Consensus 169 ~~piil~~NK~Dl~~ 183 (262)
+.|+++++||+|+..
T Consensus 30 ~kp~IlVlNK~DL~~ 44 (172)
T cd04178 30 NKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCEEEEEehhhcCC
Confidence 589999999999964
No 331
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=88.60 E-value=2.9 Score=39.61 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=33.9
Q ss_pred ecccceeEEEEeeec------cceeeeecCCccccchhhhccccC----CCEEEEeeeccccc
Q psy6623 87 VKTTGIVEVHFSFKN------LNFKLFDVGGQRSERKKWIHCFED----VTAIIFCVAMSEYD 139 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~------~~~~i~D~~Gq~~~r~~w~~~f~~----~~~iIfv~dls~~d 139 (262)
.++.|.....+.+.+ ..+.+|-++|-..+..+-..-... -..||+|+|+|.-.
T Consensus 52 ~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW 114 (472)
T PF05783_consen 52 KKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPW 114 (472)
T ss_pred CCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChH
Confidence 355666555555521 468999999876666655443321 24778899999844
No 332
>KOG0085|consensus
Probab=87.85 E-value=0.25 Score=42.12 Aligned_cols=35 Identities=60% Similarity=0.897 Sum_probs=31.2
Q ss_pred cccceeeeeehhhHHHhhccCCCccccCCCCCCCC
Q psy6623 226 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGPW 260 (262)
Q Consensus 226 ~d~~~I~~~f~~~lL~~~i~~~~l~~~~~~~~~~~ 260 (262)
++..-|..+.+.++|+.++.-+|+.++||+++||-
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~ 299 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPK 299 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCc
Confidence 44567888999999999999999999999999984
No 333
>KOG0459|consensus
Probab=87.72 E-value=0.49 Score=43.47 Aligned_cols=136 Identities=12% Similarity=0.069 Sum_probs=75.1
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.-.|+++-...|+-..-.+++.|..|+..|-.-...-...++..++|++.-- .+. ...++.--+.=+...-..
T Consensus 141 kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~-gef------etgFerGgQTREha~Lak 213 (501)
T KOG0459|consen 141 KGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARK-GEF------ETGFEKGGQTREHAMLAK 213 (501)
T ss_pred ccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhh-chh------hcccccccchhHHHHHHH
Confidence 4578888888888888899999999999987666655566777777776621 000 011111101111111112
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHH-Hhhh-ccceeecccccccceeeeeeh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQE-SLKL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~-~f~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...-..+|++.||+|-+.-.-.. .. +-++. .. ..|++. .|.. ....+..+|+.+|.++..--.
T Consensus 214 t~gv~~lVv~vNKMddPtvnWs~---eR-y~E~~----~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 214 TAGVKHLIVLINKMDDPTVNWSN---ER-YEECK----EKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhccceEEEEEEeccCCccCcch---hh-HHHHH----HHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 22345789999999975411000 00 00000 00 233331 0111 456778899999999886653
No 334
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=87.50 E-value=0.9 Score=41.64 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=42.0
Q ss_pred ceeeeecCCccccchhhhc--cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 103 NFKLFDVGGQRSERKKWIH--CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~--~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
-+.+.||+|++.+-+-... .=..++..++++...+ ... .-.++.+--++ ....|++++.+|+|
T Consensus 202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAdd---------G~~--~~tkEHLgi~~----a~~lPviVvvTK~D 266 (527)
T COG5258 202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADD---------GVT--KMTKEHLGIAL----AMELPVIVVVTKID 266 (527)
T ss_pred EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccC---------Ccc--hhhhHhhhhhh----hhcCCEEEEEEecc
Confidence 4679999999987554433 2356888999988765 111 11222221111 13689999999999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
+..
T Consensus 267 ~~~ 269 (527)
T COG5258 267 MVP 269 (527)
T ss_pred cCc
Confidence 853
No 335
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=85.82 E-value=0.84 Score=48.10 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=43.7
Q ss_pred eeeecCCcc--------ccchhhhccc---------cCCCEEEEeeeccccccccccCcc-cccH-HHHHHHHHHHHhCC
Q psy6623 105 KLFDVGGQR--------SERKKWIHCF---------EDVTAIIFCVAMSEYDQVLHEDET-TNRM-QESLKLFDSICNNK 165 (262)
Q Consensus 105 ~i~D~~Gq~--------~~r~~w~~~f---------~~~~~iIfv~dls~~d~~~~e~~~-~~~l-~e~~~~~~~i~~~~ 165 (262)
-++||+|.- ..+..|..+. +..+|||+++|+++.-. .++. .... ......+.++.+ .
T Consensus 164 vliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~---~~~~~~~~~a~~lR~rl~el~~-~ 239 (1169)
T TIGR03348 164 VLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLT---ADPAERKAHARAIRQRLQELRE-Q 239 (1169)
T ss_pred EEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhC---CCHHHHHHHHHHHHHHHHHHHH-H
Confidence 489999932 3455686654 45999999999997321 1110 0111 112222333332 2
Q ss_pred CCCCCeEEEEeeCCchh
Q psy6623 166 WFTDTSIILFLNKKDLF 182 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~ 182 (262)
.-...||.|+++|+|+.
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 22479999999999985
No 336
>KOG0460|consensus
Probab=84.84 E-value=2.1 Score=38.67 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=49.8
Q ss_pred eEEEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 93 VEVHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 93 ~~~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
+...+.+ ..-.+.-.|+.|+..|-+.-+.--...++.|+|++.+| -.+.+..+.+--.-+ ..=.
T Consensus 106 n~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatD-----------G~MPQTrEHlLLArQ---VGV~ 171 (449)
T KOG0460|consen 106 NAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATD-----------GPMPQTREHLLLARQ---VGVK 171 (449)
T ss_pred eeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCC-----------CCCcchHHHHHHHHH---cCCc
Confidence 3444444 34567778999998887666655567899999999997 334444333322211 1224
Q ss_pred eEEEEeeCCchh
Q psy6623 171 SIILFLNKKDLF 182 (262)
Q Consensus 171 piil~~NK~Dl~ 182 (262)
.|++|.||.|+.
T Consensus 172 ~ivvfiNKvD~V 183 (449)
T KOG0460|consen 172 HIVVFINKVDLV 183 (449)
T ss_pred eEEEEEeccccc
Confidence 689999999987
No 337
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=84.58 E-value=3.8 Score=32.94 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=44.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+.+.|++|..... -...+..++.+|+++..+. .++......++.+-. .+.|+.+++||.
T Consensus 91 ~~~d~viiDtpp~~~~~--~~~~l~~aD~vliv~~~~~-----------~~~~~~~~~~~~l~~----~~~~~~vV~N~~ 153 (179)
T cd03110 91 EGAELIIIDGPPGIGCP--VIASLTGADAALLVTEPTP-----------SGLHDLERAVELVRH----FGIPVGVVINKY 153 (179)
T ss_pred cCCCEEEEECcCCCcHH--HHHHHHcCCEEEEEecCCc-----------ccHHHHHHHHHHHHH----cCCCEEEEEeCC
Confidence 45778899999764432 2345688999999998774 444555444443322 146788999999
Q ss_pred chh
Q psy6623 180 DLF 182 (262)
Q Consensus 180 Dl~ 182 (262)
|..
T Consensus 154 ~~~ 156 (179)
T cd03110 154 DLN 156 (179)
T ss_pred CCC
Confidence 864
No 338
>KOG1143|consensus
Probab=83.39 E-value=4 Score=37.41 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=63.1
Q ss_pred ceeeeecCCccccchhhhccccC--CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFED--VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~--~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
-+++.|++|+.+|.+-..+-..+ .+...+|++... .......|-+-+... -++|++++.+|+|
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~--------Gi~~tTrEHLgl~~A-------L~iPfFvlvtK~D 314 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADR--------GITWTTREHLGLIAA-------LNIPFFVLVTKMD 314 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCC--------CCccccHHHHHHHHH-------hCCCeEEEEEeec
Confidence 36899999999998877664433 456666665432 012233343333322 2699999999999
Q ss_pred hhhhhh-c--cCCCcccCCCCCCCCc--------ch-hHHHHHHhhhccceeecccccccceeeee
Q psy6623 181 LFEEKI-K--KSPLTICFPEYAGKRP--------GE-RNRMQESLKLFDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 181 l~~~kl-~--~~~l~~~fp~~~g~~~--------~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~ 234 (262)
+....- . ..+++..... .|... .+ .+.-.+.....-+.++..|..+|++.+-+
T Consensus 315 l~~~~~~~~tv~~l~nll~~-~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAK-AGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred cccchhHHHHHHHHHHHHhh-cCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 975311 0 1122221111 12111 11 22333333334456777888888887643
No 339
>KOG1424|consensus
Probab=83.27 E-value=2.1 Score=40.64 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=35.1
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhh
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~ 184 (262)
|.+|.. .+-+|.||-+||.-+ ..+.-+-.+-..+.+ .......+|+.||.||...
T Consensus 166 RQLWRV-lErSDivvqIVDARn-----------Pllfr~~dLe~Yvke--~d~~K~~~LLvNKaDLl~~ 220 (562)
T KOG1424|consen 166 RQLWRV-LERSDIVVQIVDARN-----------PLLFRSPDLEDYVKE--VDPSKANVLLVNKADLLPP 220 (562)
T ss_pred HHHHHH-HhhcceEEEEeecCC-----------ccccCChhHHHHHhc--cccccceEEEEehhhcCCH
Confidence 778875 478999999999876 222222222222221 1234667889999999764
No 340
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=82.71 E-value=1.8 Score=37.70 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=32.1
Q ss_pred cCCCEEEEeeeccccccccccCccccc-HHHH----HHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNR-MQES----LKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~-l~e~----~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
+..+|||+++|+.+.- ..+...+ +... ...++++.+ ..-...||.|+++|+|+.
T Consensus 24 ~PlnGvil~vs~~~Ll----~~~~~~r~l~~~a~~lR~rL~el~~-~lg~~~PVYvv~Tk~D~l 82 (266)
T PF14331_consen 24 QPLNGVILTVSVDDLL----NADEAERELEALARALRQRLEELQR-TLGVRLPVYVVFTKCDLL 82 (266)
T ss_pred CCCCEEEEEEEHHHHh----cCChhhhHHHHHHHHHHHHHHHHHH-HhCCCCCeEeeeECCCcc
Confidence 4589999999998732 2211122 2222 222333322 223479999999999984
No 341
>COG3596 Predicted GTPase [General function prediction only]
Probab=81.26 E-value=1.9 Score=37.81 Aligned_cols=72 Identities=11% Similarity=0.288 Sum_probs=53.3
Q ss_pred eeccceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 99 FKNLNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 99 ~~~~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
+++-.+.+||++|-+. +|.+...+....+.|+.+.+..| ..+.-....++.+.-.. .+.+
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~~--~~~~ 150 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIILG--LDKR 150 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHhc--cCce
Confidence 3556789999999766 67778888889999999999887 33444455666666432 2478
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++++.|.+|...
T Consensus 151 ~i~~VtQ~D~a~ 162 (296)
T COG3596 151 VLFVVTQADRAE 162 (296)
T ss_pred eEEEEehhhhhc
Confidence 999999999754
No 342
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=79.85 E-value=3.8 Score=35.13 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=43.2
Q ss_pred cceeeeec-CCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 102 LNFKLFDV-GGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 102 ~~~~i~D~-~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
..+-+.|| ||-+.+.+.. -+++|.+|.|+|.|- .++.-+.+ +.++.+. ..=.++.+++||.|
T Consensus 134 ~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~-----------~sl~taer-i~~L~~e--lg~k~i~~V~NKv~ 196 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSY-----------KSLRTAER-IKELAEE--LGIKRIFVVLNKVD 196 (255)
T ss_pred CcEEEEecccchhhhcccc---ccCCCEEEEEeCCcH-----------HHHHHHHH-HHHHHHH--hCCceEEEEEeecc
Confidence 45678888 7877765543 479999999999984 44544433 3333332 12368999999999
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
--
T Consensus 197 e~ 198 (255)
T COG3640 197 EE 198 (255)
T ss_pred ch
Confidence 54
No 343
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=79.04 E-value=1.1 Score=39.65 Aligned_cols=56 Identities=13% Similarity=-0.028 Sum_probs=34.1
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeehhhHHHhh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
..+-+|++||+|+.... ... .+-+...++. ....++.+||++|+|++++. +||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~--~~d---------------le~~~~~lr~lnp~a~I~~vSA~tGeGld~L~--~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL--NFD---------------VEKCIACAREVNPEIEIILISATSGEGMDQWL--NWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCccc--HHH---------------HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHH--HHHHHh
Confidence 35668899999985310 000 1111122221 23568889999999999888 566553
No 344
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=78.86 E-value=6.4 Score=30.43 Aligned_cols=66 Identities=11% Similarity=0.234 Sum_probs=44.9
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.++|+++... ......+..++.++++++.+. .++......++.+.+.. ...++.++.|+.+-
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-----------~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-----------TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-----------hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 5678999987543 233456888999999998874 55555555555554322 34577899999974
Q ss_pred h
Q psy6623 182 F 182 (262)
Q Consensus 182 ~ 182 (262)
.
T Consensus 110 ~ 110 (139)
T cd02038 110 P 110 (139)
T ss_pred H
Confidence 3
No 345
>KOG0082|consensus
Probab=77.84 E-value=1.9 Score=39.18 Aligned_cols=34 Identities=79% Similarity=1.248 Sum_probs=30.5
Q ss_pred cccceeeeeehhhHHHhhccCCCccccCCCCCCC
Q psy6623 226 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259 (262)
Q Consensus 226 ~d~~~I~~~f~~~lL~~~i~~~~l~~~~~~~~~~ 259 (262)
.++.-|..+.+.+++++|+++.++..|||.|.|+
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~ 294 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGV 294 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCC
Confidence 4456688888889999999999999999999998
No 346
>KOG0447|consensus
Probab=74.50 E-value=9.2 Score=36.88 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=50.1
Q ss_pred ccceeEEEEeeec---cceeeeecCCcc-------------ccchhhhccccCCCEEEEeeeccccccccccCcccccHH
Q psy6623 89 TTGIVEVHFSFKN---LNFKLFDVGGQR-------------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQ 152 (262)
Q Consensus 89 T~Gi~~~~~~~~~---~~~~i~D~~Gq~-------------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~ 152 (262)
|++-.....++++ -.+.+.|++|-- ..-++-.+|..+.++||+|+-=.+- .
T Consensus 396 TVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV-------------D 462 (980)
T KOG0447|consen 396 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV-------------D 462 (980)
T ss_pred ccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc-------------c
Confidence 3443444455554 345678888742 2344668899999999999843221 1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhh
Q psy6623 153 ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 186 (262)
Q Consensus 153 e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl 186 (262)
.-......++..-...+..-|+|++|.|+.++.+
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknl 496 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNV 496 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhcc
Confidence 1112222333333334567788999999977533
No 347
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=73.72 E-value=4.1 Score=37.37 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=44.3
Q ss_pred hHHHhhccccCCCCC--CcCccccceeeecccceeEEEEeee-ccceeeeecCCccccchhhhccc-----cCCCEEEEe
Q psy6623 61 KYFLDDLDRLGAKEY--QPTEQDILRTRVKTTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWIHCF-----EDVTAIIFC 132 (262)
Q Consensus 61 ~yfl~~l~ri~~~~y--~pt~~Dil~~~~pT~Gi~~~~~~~~-~~~~~i~D~~Gq~~~r~~w~~~f-----~~~~~iIfv 132 (262)
.-|+|-+.-+...+- .||- +.. .|. ....+... --++.+||++|-..-+-....|+ ..-|.+|++
T Consensus 49 SSfINalrGl~~~d~~aA~tG--v~e---tT~--~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii 121 (376)
T PF05049_consen 49 SSFINALRGLGHEDEGAAPTG--VVE---TTM--EPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIII 121 (376)
T ss_dssp HHHHHHHTT--TTSTTS--SS--SHS---CCT--S-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEE
T ss_pred HHHHHHHhCCCCCCcCcCCCC--CCc---CCC--CCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEE
Confidence 469998887765432 2221 111 111 11122222 24689999999765554455554 446666654
Q ss_pred eeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 133 ~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
.+ .++.+.-.++-..+.. .+.|+++|-+|.|.
T Consensus 122 ~s--------------~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 122 SS--------------ERFTENDVQLAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp ES--------------SS--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred eC--------------CCCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence 43 4555544444344433 36899999999996
No 348
>KOG1707|consensus
Probab=71.33 E-value=18 Score=35.10 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=33.0
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
..|+.+.+++|+|+ ..++.-....++.- ......|+++++.|.|+..
T Consensus 494 ~~cDv~~~~YDsS~----------p~sf~~~a~v~~~~---~~~~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 494 AACDVACLVYDSSN----------PRSFEYLAEVYNKY---FDLYKIPCLMVATKADLDE 540 (625)
T ss_pred ceeeeEEEecccCC----------chHHHHHHHHHHHh---hhccCCceEEEeeccccch
Confidence 56899999999997 44444433333222 2236799999999999865
No 349
>KOG2423|consensus
Probab=70.75 E-value=7 Score=36.15 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=37.7
Q ss_pred CCccccchhhhccc---cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 110 GGQRSERKKWIHCF---EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 110 ~Gq~~~r~~w~~~f---~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.||. .++|...| +.++.||=|+|.-| +.-.+-.. .++.+.. ......+++|+||+||..
T Consensus 197 kGQS--kRIW~ELyKViDSSDVvvqVlDARD--------PmGTrc~~----ve~ylkk-e~phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 197 KGQS--KRIWGELYKVIDSSDVVVQVLDARD--------PMGTRCKH----VEEYLKK-EKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred ccch--hHHHHHHHHhhcccceeEEeeeccC--------CcccccHH----HHHHHhh-cCCcceeEEEeecccccc
Confidence 4553 67898876 57888999999876 21222222 2223322 235678999999999954
No 350
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.70 E-value=6.2 Score=41.48 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=43.7
Q ss_pred eeeecCCcc--------ccchhhhcc---------ccCCCEEEEeeeccccccccccCcccccHHHH---HHHHHHHHhC
Q psy6623 105 KLFDVGGQR--------SERKKWIHC---------FEDVTAIIFCVAMSEYDQVLHEDETTNRMQES---LKLFDSICNN 164 (262)
Q Consensus 105 ~i~D~~Gq~--------~~r~~w~~~---------f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~---~~~~~~i~~~ 164 (262)
-+.||+|-. ..+.-|.++ .+..+|||+.+|+++-- ..+...+...+ ..-++++...
T Consensus 177 VlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~----~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 177 VLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLL----TADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred EEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHc----CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 467888842 345677754 25699999999999832 11111221111 1223333322
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
--...|++|++||.|+..
T Consensus 253 -L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 253 -LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred -hccCCceEEEEecccccc
Confidence 124689999999999853
No 351
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=68.08 E-value=3.9 Score=33.99 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=53.1
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh-CCCCCCCeEEEEeeCCc
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN-NKWFTDTSIILFLNKKD 180 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~-~~~~~~~piil~~NK~D 180 (262)
..+-+...+|.-. -...+.-+.+.-|+|+|.+.=+.. + .. .|..-. .=+++.||.|
T Consensus 97 ~Dll~iEs~GNL~---~~~sp~L~d~~~v~VidvteGe~~------P-------------~K~gP~i~~-aDllVInK~D 153 (202)
T COG0378 97 LDLLFIESVGNLV---CPFSPDLGDHLRVVVIDVTEGEDI------P-------------RKGGPGIFK-ADLLVINKTD 153 (202)
T ss_pred CCEEEEecCccee---cccCcchhhceEEEEEECCCCCCC------c-------------ccCCCceeE-eeEEEEehHH
Confidence 3455667777211 112233344577899998872111 0 00 122222 3477889999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeehhhHHHhh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
|... -|-+ .+-+....+. -...+.+||+++|+|++++. .|+...
T Consensus 154 La~~--------------v~~d---levm~~da~~~np~~~ii~~n~ktg~G~~~~~--~~i~~~ 199 (202)
T COG0378 154 LAPY--------------VGAD---LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWL--RFIEPQ 199 (202)
T ss_pred hHHH--------------hCcc---HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHH--HHHHhh
Confidence 9652 1211 1111111111 24567889999999999887 455443
No 352
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=66.73 E-value=20 Score=35.67 Aligned_cols=83 Identities=10% Similarity=0.142 Sum_probs=49.2
Q ss_pred eeEEEEeeeccceeeeecCCccccc------hhh----hcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSER------KKW----IHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r------~~w----~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
........++..+.++||+|-.... ... ..++. ++++||||..++.+..- ..-..+++.+.
T Consensus 156 ~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D-------~eD~~aLr~Iq 228 (763)
T TIGR00993 156 VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRD-------SNDLPLLRTIT 228 (763)
T ss_pred EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcccc-------HHHHHHHHHHH
Confidence 3333344567889999999976421 111 12333 58999999988752110 01124566666
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.++..... .-+||+++..|...
T Consensus 229 ~lFG~~Iw--k~tIVVFThgD~lp 250 (763)
T TIGR00993 229 DVLGPSIW--FNAIVTLTHAASAP 250 (763)
T ss_pred HHhCHHhH--cCEEEEEeCCccCC
Confidence 66754433 34688888888653
No 353
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=64.56 E-value=20 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=23.9
Q ss_pred ceeeeecCCcccc----chhh---hccccCCCEEEEeeeccc
Q psy6623 103 NFKLFDVGGQRSE----RKKW---IHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 103 ~~~i~D~~Gq~~~----r~~w---~~~f~~~~~iIfv~dls~ 137 (262)
.+++.|++|-..- +.+. ....+.++++|+|+|..+
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 4899999994321 1222 223478999999999864
No 354
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=64.21 E-value=34 Score=32.17 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=25.7
Q ss_pred CCCEEEEee-eccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 125 DVTAIIFCV-AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 125 ~~~~iIfv~-dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.++..|+|. |-|--+ .. .+...++-+.+-.-+.. .+.|+++++||+|
T Consensus 144 hstIgivVtTDgsi~d-I~-----Re~y~~aEe~~i~eLk~---~~kPfiivlN~~d 191 (492)
T TIGR02836 144 HSTIGVVVTTDGTITD-IP-----REDYVEAEERVIEELKE---LNKPFIILLNSTH 191 (492)
T ss_pred cCcEEEEEEcCCCccc-cc-----cccchHHHHHHHHHHHh---cCCCEEEEEECcC
Confidence 677777777 665111 00 12233332222222222 3799999999999
No 355
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=58.26 E-value=10 Score=29.44 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=56.4
Q ss_pred eeecCCccccchhhhc----cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 106 LFDVGGQRSERKKWIH----CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 106 i~D~~Gq~~~r~~w~~----~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..||.|.--..+.|-+ --.+++.+++|-+..+-. .++.- -... ....|+|=+.+|.||
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~---------s~f~p-------~f~~--~~~k~vIgvVTK~DL 102 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE---------SRFPP-------GFLD--IGVKKVIGVVTKADL 102 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc---------ccCCc-------cccc--ccccceEEEEecccc
Confidence 5689987666666633 347899999998877621 11110 0001 123468888999999
Q ss_pred hh-hhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 182 FE-EKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 182 ~~-~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+ +.+... ..++++ . ..-.++.+||.|.++|+++++
T Consensus 103 aed~dI~~~----------------~~~L~e-a--Ga~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 103 AEDADISLV----------------KRWLRE-A--GAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred cchHhHHHH----------------HHHHHH-c--CCcceEEEeccCcccHHHHHH
Confidence 83 222111 122221 0 123467899999999999994
No 356
>KOG3929|consensus
Probab=58.13 E-value=9.5 Score=33.32 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=24.4
Q ss_pred eeeeecCCccccchhhhccc--cC--CCEEEEeeecccccccc
Q psy6623 104 FKLFDVGGQRSERKKWIHCF--ED--VTAIIFCVAMSEYDQVL 142 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f--~~--~~~iIfv~dls~~d~~~ 142 (262)
.++|.+||-..--.+...=. ++ .-++|++.|+|.-+...
T Consensus 94 aN~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~~W 136 (363)
T KOG3929|consen 94 ANFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPNDLW 136 (363)
T ss_pred HHHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHHHH
Confidence 57999999766443332211 22 23678899999966543
No 357
>KOG0463|consensus
Probab=57.26 E-value=29 Score=32.01 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.6
Q ss_pred eeeeecCCccccchh
Q psy6623 104 FKLFDVGGQRSERKK 118 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~ 118 (262)
+++.|++|+++|-+-
T Consensus 221 iTFIDLAGHEkYLKT 235 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKT 235 (641)
T ss_pred EEEEeccchhhhhhe
Confidence 689999999998663
No 358
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=56.74 E-value=9 Score=34.25 Aligned_cols=28 Identities=86% Similarity=1.308 Sum_probs=23.7
Q ss_pred eeeeehhhHHHhhccCCCccccCCCCCC
Q psy6623 231 ILFLNKKDLFEEKIKKSPLTICFPEYAG 258 (262)
Q Consensus 231 I~~~f~~~lL~~~i~~~~l~~~~~~~~~ 258 (262)
+-.+.+.+++.++++++++.+|||+|.|
T Consensus 232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g 259 (317)
T cd00066 232 ILFLNKKDLFEEKIKKSPLTDYFPDYTG 259 (317)
T ss_pred EEEccChHHHHHhhcCCCccccCCCCCC
Confidence 4444445999999999999999999998
No 359
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=55.86 E-value=40 Score=24.59 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=38.7
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
.+-+.|+++..... -...+..++.+|++++.+. .++.......+.+..........+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-----------~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-----------PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-----------HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 67799999865432 2346688999999998774 445555454444433221113456677775
No 360
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=55.12 E-value=13 Score=29.43 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=13.5
Q ss_pred CCCEEEEeeeccccccc
Q psy6623 125 DVTAIIFCVAMSEYDQV 141 (262)
Q Consensus 125 ~~~~iIfv~dls~~d~~ 141 (262)
.++++++++|.+.+...
T Consensus 118 ~~d~vv~vvDa~~~~~~ 134 (158)
T cd03112 118 LLDGVITLVDAKHANQH 134 (158)
T ss_pred eeccEEEEEEhhHhHHH
Confidence 48899999998876543
No 361
>PTZ00258 GTP-binding protein; Provisional
Probab=54.56 E-value=34 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.2
Q ss_pred cceeeeecCCccccc----h---hhhccccCCCEEEEeeecccc
Q psy6623 102 LNFKLFDVGGQRSER----K---KWIHCFEDVTAIIFCVAMSEY 138 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r----~---~w~~~f~~~~~iIfv~dls~~ 138 (262)
..+.+.|++|-..-. . ......++++++|+|+|...-
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d 128 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFED 128 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCC
Confidence 458999999953211 1 222345789999999998643
No 362
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=54.18 E-value=42 Score=26.37 Aligned_cols=64 Identities=6% Similarity=0.067 Sum_probs=41.0
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+-+.|++|..... -...+..++.+|++++.+. .++......++.+-.. ....+.+++|+.+-.
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-----------~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-----------SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-----------chHHHHHHHHHHHHHc---CCceEEEEEeCCccc
Confidence 68899998864432 2344678999999988764 4455555544443321 224567889998753
No 363
>PHA02518 ParA-like protein; Provisional
Probab=54.07 E-value=35 Score=27.79 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=27.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
...+.|+|++|.. ..........++.||.++..+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~ 110 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP 110 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh
Confidence 4678899999864 3445566788999999998875
No 364
>KOG0469|consensus
Probab=53.40 E-value=15 Score=35.12 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=45.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+.-+++.|..|+-.|.+--..-.+-.+|.+.|+|.-+ --.. +.-..+++.+.. .+--+|+.||.|
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~----------GvCV-QTETVLrQA~~E----RIkPvlv~NK~D 161 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS----------GVCV-QTETVLRQAIAE----RIKPVLVMNKMD 161 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccC----------ceEe-chHHHHHHHHHh----hccceEEeehhh
Confidence 3567899999999998887778888999999999876 1111 112233344432 233356789999
Q ss_pred h
Q psy6623 181 L 181 (262)
Q Consensus 181 l 181 (262)
.
T Consensus 162 R 162 (842)
T KOG0469|consen 162 R 162 (842)
T ss_pred H
Confidence 5
No 365
>KOG2484|consensus
Probab=50.79 E-value=26 Score=32.48 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=30.7
Q ss_pred ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 121 ~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
.-.+.+|.||.|.|.-|-. ..|-.+.-++ ++.. ..+.-+|||+||.||-.
T Consensus 142 kvve~sDVVleVlDARDPl--------gtR~~~vE~~---V~~~--~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 142 KVVEASDVVLEVLDARDPL--------GTRCPEVEEA---VLQA--HGNKKLILVLNKIDLVP 191 (435)
T ss_pred HHHhhhheEEEeeeccCCC--------CCCChhHHHH---HHhc--cCCceEEEEeehhccCC
Confidence 3446799999999988721 1222222222 2222 23578999999999853
No 366
>KOG1954|consensus
Probab=50.42 E-value=33 Score=31.68 Aligned_cols=67 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred ceeeeecCCccccchhh-----------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 103 NFKLFDVGGQRSERKKW-----------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w-----------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
++++.||.|--+-++.. .=|.+.|+.||+++|....| --.|-.+.+..+..+ .--
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD----------IsdEf~~vi~aLkG~----Edk 213 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD----------ISDEFKRVIDALKGH----EDK 213 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc----------ccHHHHHHHHHhhCC----cce
Confidence 57899999964433321 11336799999999987632 223333334444333 234
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
+=||+||.|..+
T Consensus 214 iRVVLNKADqVd 225 (532)
T KOG1954|consen 214 IRVVLNKADQVD 225 (532)
T ss_pred eEEEeccccccC
Confidence 677899999753
No 367
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=50.00 E-value=38 Score=31.00 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=50.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.++|.+- ........+..+++.|+.|++.| .-++..++++++.+-.- .....+..+++||.+
T Consensus 217 ~~~~vV~Dlp~--~~~~~t~~vL~~Sd~iviv~e~s-----------l~slR~ak~lld~l~~~-r~~~~~p~lv~n~~~ 282 (366)
T COG4963 217 SFDFVVVDLPN--IWTDWTRQVLSGSDEIVIVAEPS-----------LASLRNAKELLDELKRL-RPNDPKPILVLNRVG 282 (366)
T ss_pred cCCeEEEcCCC--ccchHHHHHHhcCCeEEEEeccc-----------HHHHHHHHHHHHHHHHh-CCCCCCceEEeeecC
Confidence 35678999982 22222345778999999999987 58888998888877653 345678888999988
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
..
T Consensus 283 ~~ 284 (366)
T COG4963 283 VP 284 (366)
T ss_pred CC
Confidence 64
No 368
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=49.98 E-value=42 Score=27.65 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=37.3
Q ss_pred CEEEEeeeccccccccccCcccccHHHHHHHHHHHH----hCCCCCCCeEEEEee
Q psy6623 127 TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC----NNKWFTDTSIILFLN 177 (262)
Q Consensus 127 ~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~----~~~~~~~~piil~~N 177 (262)
.++++++|.|.+ .+.+|-.++|+.-++.....++ +......+.++.+++
T Consensus 4 ea~vi~lD~S~s--M~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag 56 (187)
T cd01452 4 EATMICIDNSEY--MRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAG 56 (187)
T ss_pred eEEEEEEECCHH--HHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecC
Confidence 578999999984 3556666899999998888764 333445788888888
No 369
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=48.69 E-value=24 Score=31.78 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 125 ~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
..+++|-|+|.+.+. +.+....+.+..-+... =+|++||.|+..
T Consensus 116 ~ld~vvtvVDa~~~~---------~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv~ 159 (323)
T COG0523 116 RLDGVVTVVDAAHFL---------EGLDAIAELAEDQLAFA------DVIVLNKTDLVD 159 (323)
T ss_pred eeceEEEEEeHHHhh---------hhHHHHHHHHHHHHHhC------cEEEEecccCCC
Confidence 368899999999863 22332333333333221 167899999965
No 370
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=48.55 E-value=49 Score=26.17 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=36.5
Q ss_pred ccceeeeecCCccccchhhh----cc--ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 101 NLNFKLFDVGGQRSERKKWI----HC--FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~----~~--f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
+..+-+.|++|......-+. .+ ....+++++|++... .. ++.+......+.. + ..-+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~----------~~---~~~~~~~~~~~~~---~-~~~v 144 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT----------GQ---DAVNQAKAFNEAL---G-ITGV 144 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC----------Ch---HHHHHHHHHHhhC---C-CCEE
Confidence 45677899999743322121 11 124889999999753 22 2233333333221 1 2456
Q ss_pred EeeCCchhh
Q psy6623 175 FLNKKDLFE 183 (262)
Q Consensus 175 ~~NK~Dl~~ 183 (262)
++||.|...
T Consensus 145 iltk~D~~~ 153 (173)
T cd03115 145 ILTKLDGDA 153 (173)
T ss_pred EEECCcCCC
Confidence 779999744
No 371
>KOG2486|consensus
Probab=48.45 E-value=24 Score=31.23 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.7
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.++|+.+|+||||.-.
T Consensus 247 ~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQK 262 (320)
T ss_pred cCCCeEEeeehhhhhh
Confidence 4799999999999754
No 372
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=47.95 E-value=68 Score=28.14 Aligned_cols=42 Identities=12% Similarity=0.335 Sum_probs=27.2
Q ss_pred CCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 126 VTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 126 ~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+|++||+++.+. .++.+. ++.++.+. ..+++|=|..|.|.+.
T Consensus 114 VH~cLYfI~pt~-----------~~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 114 VHACLYFIPPTG-----------HGLKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp EEEEEEEE-TTS-----------SSS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred cceEEEEEcCCC-----------ccchHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 889999999775 444432 34444443 3478899999999864
No 373
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=47.85 E-value=61 Score=29.70 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=24.4
Q ss_pred ceeeeecCCcccc----ch---hhhccccCCCEEEEeeeccc
Q psy6623 103 NFKLFDVGGQRSE----RK---KWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 103 ~~~i~D~~Gq~~~----r~---~w~~~f~~~~~iIfv~dls~ 137 (262)
.+.+.|++|-..- +. ......+.++++|+|+|.+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 5899999995321 11 22234578999999999874
No 374
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=47.27 E-value=78 Score=26.08 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=39.8
Q ss_pred eccceeeeecCCccccchhhhcc-ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC-eEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHC-FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT-SIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~-f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~-piil~~N 177 (262)
+++.+-+.|+.|.-......... .+-++.+|.++..+. .++......++.+-.-....+. ...++.|
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-----------~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N 183 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-----------MALYAANNICKGIRKYAKSGGVRLGGLICN 183 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-----------HHHHHHHHHHHHHHHhCcccCCcEEEEEEe
Confidence 45788899997754322221111 246889999988764 4444444333333322111133 3558999
Q ss_pred CCch
Q psy6623 178 KKDL 181 (262)
Q Consensus 178 K~Dl 181 (262)
|.+.
T Consensus 184 ~~~~ 187 (212)
T cd02117 184 SRNT 187 (212)
T ss_pred CCCC
Confidence 9985
No 375
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=46.41 E-value=17 Score=32.92 Aligned_cols=31 Identities=58% Similarity=0.970 Sum_probs=25.0
Q ss_pred ceeeeee-hhhHHHhhccCCCccccCCCCCCC
Q psy6623 229 SIILFLN-KKDLFEEKIKKSPLTICFPEYAGP 259 (262)
Q Consensus 229 ~~I~~~f-~~~lL~~~i~~~~l~~~~~~~~~~ 259 (262)
..|-.+| +.+++.++++++++..|||+|+|+
T Consensus 252 ~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~ 283 (342)
T smart00275 252 TSIILFLNKIDLFEEKIKKVPLVDYFPDYKGP 283 (342)
T ss_pred CcEEEEEecHHhHHHHhCCCchhccCCCCCCC
Confidence 3344444 458999999999999999999995
No 376
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=46.39 E-value=39 Score=30.53 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=31.5
Q ss_pred EeeeccceeeeecCCc----cccc---hhhhccccCCCEEEEeeeccc
Q psy6623 97 FSFKNLNFKLFDVGGQ----RSER---KKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq----~~~r---~~w~~~f~~~~~iIfv~dls~ 137 (262)
+.+++..+|+.|++|- ..-| +.-..-.++||.||+|+|+..
T Consensus 105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCC
Confidence 5668999999999853 3223 334566799999999999985
No 377
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=46.00 E-value=2.7 Score=36.52 Aligned_cols=20 Identities=10% Similarity=-0.273 Sum_probs=17.0
Q ss_pred ceeecccccccceeeeeehh
Q psy6623 218 SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 218 ~~~~~tsA~d~~~I~~~f~~ 237 (262)
..+..|||..++||.++++.
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~ 224 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEA 224 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHH
Confidence 36788999999999999975
No 378
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=44.38 E-value=55 Score=27.19 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=35.9
Q ss_pred CEEEEeeeccccccccccC--cccccHHHHHHHHHHHHhC----CCCCCCeEEEEeeC
Q psy6623 127 TAIIFCVAMSEYDQVLHED--ETTNRMQESLKLFDSICNN----KWFTDTSIILFLNK 178 (262)
Q Consensus 127 ~~iIfv~dls~~d~~~~e~--~~~~~l~e~~~~~~~i~~~----~~~~~~piil~~NK 178 (262)
.+++|++|+|.. +.... ....+++.++..+..+++. .....+.+++++++
T Consensus 2 e~ivf~iDvS~S--M~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~ 57 (218)
T cd01458 2 ESVVFLVDVSPS--MFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTE 57 (218)
T ss_pred cEEEEEEeCCHH--HcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEccc
Confidence 478999999962 22221 2268999999999999985 33346788888876
No 379
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=42.40 E-value=34 Score=27.51 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=25.3
Q ss_pred CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhh
Q psy6623 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 125 ~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~ 184 (262)
..+.+|.|+|...+. ........+...+.. +. +|++||+|+..+
T Consensus 113 ~~~~iI~vVDa~~~~----------~~~~~~~~~~~Qi~~-----AD-vIvlnK~D~~~~ 156 (178)
T PF02492_consen 113 RLDSIITVVDATNFD----------ELENIPELLREQIAF-----AD-VIVLNKIDLVSD 156 (178)
T ss_dssp SESEEEEEEEGTTHG----------GHTTHCHHHHHHHCT------S-EEEEE-GGGHHH
T ss_pred cccceeEEecccccc----------ccccchhhhhhcchh-----cC-EEEEeccccCCh
Confidence 468899999998752 112222333333322 11 577899999764
No 380
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=41.97 E-value=5.8 Score=35.28 Aligned_cols=19 Identities=11% Similarity=-0.298 Sum_probs=16.5
Q ss_pred eeecccccccceeeeeehh
Q psy6623 219 ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 219 ~~~~tsA~d~~~I~~~f~~ 237 (262)
.+..|||..|+||.+++++
T Consensus 230 pv~~t~A~~g~Gi~~L~~a 248 (323)
T COG1703 230 PVVTTSALEGEGIDELWDA 248 (323)
T ss_pred ceeEeeeccCCCHHHHHHH
Confidence 3677999999999999986
No 381
>COG1161 Predicted GTPases [General function prediction only]
Probab=41.28 E-value=15 Score=33.02 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=34.7
Q ss_pred cccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhh
Q psy6623 113 RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 113 ~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~ 184 (262)
....+.-......++.|+-|+|.-+.... . ...+..++. +.|.++++||.||...
T Consensus 22 ~k~~~~~~~~~~~~d~vvevvDar~P~~s------~------~~~l~~~v~-----~k~~i~vlNK~DL~~~ 76 (322)
T COG1161 22 KKAKRQLKEVLKSVDVVVEVVDARDPLGT------R------NPELERIVK-----EKPKLLVLNKADLAPK 76 (322)
T ss_pred HHHHHHHHHhcccCCEEEEEEeccccccc------c------CccHHHHHc-----cCCcEEEEehhhcCCH
Confidence 34444445567889999999999873211 1 112333332 3455999999999763
No 382
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=38.74 E-value=22 Score=32.64 Aligned_cols=32 Identities=69% Similarity=1.130 Sum_probs=24.7
Q ss_pred cceeeeeehhhHHHhhccCCC-ccccCCCCCCC
Q psy6623 228 TSIILFLNKKDLFEEKIKKSP-LTICFPEYAGP 259 (262)
Q Consensus 228 ~~~I~~~f~~~lL~~~i~~~~-l~~~~~~~~~~ 259 (262)
..-|..+.+.++|.+|+..++ +.++||+|.|+
T Consensus 304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~ 336 (389)
T PF00503_consen 304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGD 336 (389)
T ss_dssp SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH
T ss_pred CceEEeeecHHHHHHHccCCCchHhhCCCCCCC
Confidence 344445555599999999998 99999999775
No 383
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=38.56 E-value=59 Score=30.53 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=38.0
Q ss_pred ccceeeeecCCccccchhhhc----c--ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 101 NLNFKLFDVGGQRSERKKWIH----C--FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~----~--f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
+..+-|.||+|.-.....+.. + ..+.+-+++|+|.+- ...-.+..+.|.+.+ .+--+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~----------Gq~a~~~a~~F~~~~-------~~~g~ 244 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI----------GQAAEAQAKAFKDSV-------DVGSV 244 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc----------ChhHHHHHHHHHhcc-------CCcEE
Confidence 567899999996543332221 1 124678999999764 222233334444322 23456
Q ss_pred EeeCCchh
Q psy6623 175 FLNKKDLF 182 (262)
Q Consensus 175 ~~NK~Dl~ 182 (262)
++||.|..
T Consensus 245 IlTKlD~~ 252 (429)
T TIGR01425 245 IITKLDGH 252 (429)
T ss_pred EEECccCC
Confidence 78999964
No 384
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.04 E-value=74 Score=26.60 Aligned_cols=66 Identities=9% Similarity=0.003 Sum_probs=41.1
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+-+.|+++.. ..........++.+|+++..+- .++......+..++.. .....++-++.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~-----------~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNADA-----------ACYATLHQQALALFAG-SGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCH-----------HHHHHHHHHHHHHhhc-ccccccceEEeeccCcc
Confidence 67899999843 3334456678999999988763 3334333344444431 11234577899998853
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.17 E-value=70 Score=27.88 Aligned_cols=66 Identities=15% Similarity=0.331 Sum_probs=38.0
Q ss_pred eccceeeeecCCccccchhhh-------ccc-----cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWI-------HCF-----EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~-------~~f-----~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
++..+-+.||+|.-.....+. ... ..++.+++|+|.+. ..+.+..+ ..|.+.+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---------~~~~~~~~-~~f~~~~----- 217 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---------GQNALEQA-KVFNEAV----- 217 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---------CHHHHHHH-HHHHhhC-----
Confidence 456788999999754322221 111 23789999999874 12333333 2232222
Q ss_pred CCCeEEEEeeCCchh
Q psy6623 168 TDTSIILFLNKKDLF 182 (262)
Q Consensus 168 ~~~piil~~NK~Dl~ 182 (262)
.+--+++||.|..
T Consensus 218 --~~~g~IlTKlDe~ 230 (272)
T TIGR00064 218 --GLTGIILTKLDGT 230 (272)
T ss_pred --CCCEEEEEccCCC
Confidence 1346788999964
No 386
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=34.93 E-value=90 Score=26.44 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=43.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC--CCCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN--KWFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~--~~~~~~piil~~N 177 (262)
++..+.|.|++|... ......+..+|.||..+..+.+ .+..+...+..+... ....+.+..++.|
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~-----------d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~ 148 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL-----------DIDEALSTYRYVIELLLSENLAIPTAILRQ 148 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH-----------HHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 357788999999764 3344566788999988887753 344444444433321 1123567788999
Q ss_pred CCc
Q psy6623 178 KKD 180 (262)
Q Consensus 178 K~D 180 (262)
.++
T Consensus 149 ~~~ 151 (231)
T PRK13849 149 RVP 151 (231)
T ss_pred ecc
Confidence 876
No 387
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.78 E-value=1.3e+02 Score=25.74 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=39.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-IILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-iil~~NK 178 (262)
++..+-|.|++|...... ....+..+|.+|.++..+-++ ...+...++.++....+ .+.+ ..++.|+
T Consensus 114 ~~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~~~--------l~~~~~~~~~i~~~~~~---~~l~~~giV~Nr 181 (267)
T cd02032 114 EEYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDFDS--------IFAANRIAAAVREKAKT---YKVRLAGLIANR 181 (267)
T ss_pred ccCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCccc--------HHHHHHHHHHHHHHhhc---cCCceEEEEEeC
Confidence 356788999987532211 111256799999988776411 23333344444433222 2343 3467899
Q ss_pred Cch
Q psy6623 179 KDL 181 (262)
Q Consensus 179 ~Dl 181 (262)
.+.
T Consensus 182 ~~~ 184 (267)
T cd02032 182 TDK 184 (267)
T ss_pred CCH
Confidence 985
No 388
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=33.86 E-value=1.2e+02 Score=21.41 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=24.7
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
..+-+.|++|..... -...+..++.+|.+++.+.
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH
Confidence 457799999875432 2256678999999998764
No 389
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=33.11 E-value=42 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCCCCcCccccceeeecccceeEEEEeeeccceeeeecCCccccch
Q psy6623 72 AKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERK 117 (262)
Q Consensus 72 ~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~ 117 (262)
.|+|.|.. |++-++.....-+.+ -.=||+-|-.+|..
T Consensus 31 ~P~F~P~~--------P~I~VnI~~~~~~~~-~~EWDVv~C~SF~e 67 (77)
T PF10718_consen 31 NPDFEPKE--------PTIHVNIRSLKNGEI-EMEWDVVGCLSFVE 67 (77)
T ss_pred CCCcCCCC--------CEEEEEEEeCCCCcE-EEEEEecccccchh
Confidence 57888855 666666554332223 33599999887754
No 390
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=32.98 E-value=1.8e+02 Score=23.63 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=38.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+-+.|++.-... .--....+.++++|+|++... .+..+.....+.+-+. ....+-+++||.|
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-----------~~~~~~~~~~~~l~~~---~~~~~gvVlN~~~ 191 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGE-----------IKKRDVQKAKEQLEQT---GSNFLGVVLNKVD 191 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCC-----------CCHHHHHHHHHHHHhC---CCCEEEEEEeCcc
Confidence 466789999862111 011123456899999998764 3344444333333221 2235677889999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
...
T Consensus 192 ~~~ 194 (204)
T TIGR01007 192 ISV 194 (204)
T ss_pred ccc
Confidence 654
No 391
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=31.53 E-value=1.5e+02 Score=25.33 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=37.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE-EEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI-ILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi-il~~NK 178 (262)
+++.+-+.|+.|.-.... .......++.+|.++..+.++ ...+....+.++....+ .+.++ -++.|+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~s--------l~~~~~~~~~i~~~~~~---~~l~i~giv~N~ 183 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDS--------IFAANRIAAAIQAKAKN---YKVRLAGVIANR 183 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhh--------HHHHHHHHHHHHhhhhc---cCCCceEEEEec
Confidence 357789999987543221 112356789999888765311 22233333333322211 24554 378898
Q ss_pred Cch
Q psy6623 179 KDL 181 (262)
Q Consensus 179 ~Dl 181 (262)
.+.
T Consensus 184 ~~~ 186 (270)
T PRK13185 184 SAG 186 (270)
T ss_pred cCh
Confidence 774
No 392
>KOG0466|consensus
Probab=30.59 E-value=27 Score=31.31 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=59.7
Q ss_pred eeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 104 FKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 104 ~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+.+.|+.|++-.-.-..+--.=.|++++.+.-.+ .++... ..|-+...+ ++ .-..++++-||.||..
T Consensus 127 VSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NE---sCPQPQ----TsEHLaave-iM-----~LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 127 VSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE---SCPQPQ----TSEHLAAVE-IM-----KLKHIIILQNKIDLIK 193 (466)
T ss_pred EEeccCCchHHHHHHHhcchHHhhhhhhhhhcCC---CCCCCc----hhhHHHHHH-Hh-----hhceEEEEechhhhhh
Confidence 5688999987543322221122456666665443 222222 222222221 11 2356899999999987
Q ss_pred hhhccCCCcccCCCCCCCCcch--hHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 184 EKIKKSPLTICFPEYAGKRPGE--RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 184 ~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+..... .++ .+|+.....+ .-.+..+||.-+.||+.+-+ .+.+++.
T Consensus 194 e~~A~e-------------q~e~I~kFi~~t~ae-~aPiiPisAQlkyNId~v~e--yivkkIP 241 (466)
T KOG0466|consen 194 ESQALE-------------QHEQIQKFIQGTVAE-GAPIIPISAQLKYNIDVVCE--YIVKKIP 241 (466)
T ss_pred HHHHHH-------------HHHHHHHHHhccccC-CCceeeehhhhccChHHHHH--HHHhcCC
Confidence 532211 111 4444432222 23466799999999988773 4555543
No 393
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=29.40 E-value=1.7e+02 Score=24.37 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=40.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+-|+|+++.-.. .-......++.||+|++.+- .++.++....+. .... ....+.++.|+.+
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-----------~s~~~~~~~~~~-~~~~--~~~~~~vv~N~~~ 171 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-----------SSITDALKTKIV-AEKL--GTAILGVVLNRVT 171 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-----------chHHHHHHHHHH-HHhc--CCceEEEEEECCC
Confidence 467889999986543 22334567899999988764 455555554332 2222 1223568899987
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
-.
T Consensus 172 ~~ 173 (251)
T TIGR01969 172 RD 173 (251)
T ss_pred ch
Confidence 53
No 394
>KOG1534|consensus
Probab=28.91 E-value=52 Score=28.06 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEeeeccceeeeec
Q psy6623 30 ELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDV 109 (262)
Q Consensus 30 ~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~ 109 (262)
++.-.|+.|..=..|.+-+.-...=.|.-+.+|++++++-+-.. +|-. +-.+-++|+
T Consensus 49 ~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~NldwL~~~----------------~Gd~-------eddylifDc 105 (273)
T KOG1534|consen 49 PVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENLDWLEEE----------------IGDV-------EDDYLIFDC 105 (273)
T ss_pred cccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHHHHHHhh----------------ccCc-------cCCEEEEeC
Confidence 34444666655555555443322223445567888887766541 1100 123558899
Q ss_pred CCcccc-------chhhh----ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 110 GGQRSE-------RKKWI----HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 110 ~Gq~~~-------r~~w~----~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+||-.. +.+-. -+|+ -+++|++|..- +.+ ...-+..++..+..++. -.+|-|=++.|
T Consensus 106 PGQIELytH~pVm~~iv~hl~~~~F~--~c~Vylldsqf----~vD--~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 106 PGQIELYTHLPVMPQIVEHLKQWNFN--VCVVYLLDSQF----LVD--STKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCeeEEeecChhHHHHHHHHhcccCc--eeEEEEeccch----hhh--HHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 998441 11111 1233 24556555321 000 01223344444444443 35788889999
Q ss_pred Cchhhhh
Q psy6623 179 KDLFEEK 185 (262)
Q Consensus 179 ~Dl~~~k 185 (262)
+||...+
T Consensus 174 MDLlk~~ 180 (273)
T KOG1534|consen 174 MDLLKDK 180 (273)
T ss_pred HHHhhhh
Confidence 9998764
No 395
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=28.74 E-value=2.7e+02 Score=21.72 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=42.1
Q ss_pred eccceeeeecCCccccchhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~N 177 (262)
++..+-+.|+++.-.... .... ..++.+|+|+..+. .++.++...++.+-+. .-..+-++.|
T Consensus 66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~~-----------~s~~~~~~~~~~l~~~---~~~~~gvv~N 129 (169)
T cd02037 66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQE-----------VALDDVRKAIDMFKKV---NIPILGVVEN 129 (169)
T ss_pred CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCch-----------hhHHHHHHHHHHHHhc---CCCeEEEEEc
Confidence 346678999988632211 1223 46899999987664 5667776666666543 1234467899
Q ss_pred CCchh
Q psy6623 178 KKDLF 182 (262)
Q Consensus 178 K~Dl~ 182 (262)
+.+..
T Consensus 130 ~~~~~ 134 (169)
T cd02037 130 MSYFV 134 (169)
T ss_pred CCccc
Confidence 98753
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=28.09 E-value=1.3e+02 Score=23.38 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=24.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeecc
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMS 136 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls 136 (262)
.+..+-+.|++|-. .-....+..++-+|+|+..+
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPG 123 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCC
Confidence 35788899999954 22345788899888777543
No 397
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=28.02 E-value=91 Score=24.76 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=43.1
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+-+.|+++..... .......++.+|.+++.+. .++.....+.+.+.... ..-..+.++.||.+.
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-----------~~i~~~~~~~~~l~~~~-~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-----------SSIEGAERLIELLKRLG-KKLKIIGVVINRVDP 160 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-----------HHHHHHHHHHHHHHHHT-HTEEEEEEEEEEETS
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-----------HHHHHHHHHHHHHHHhc-cccceEEEEEeeeCC
Confidence 667899998865433 5566778999999999875 34555554444433211 112356788999975
Q ss_pred h
Q psy6623 182 F 182 (262)
Q Consensus 182 ~ 182 (262)
-
T Consensus 161 ~ 161 (195)
T PF01656_consen 161 G 161 (195)
T ss_dssp C
T ss_pred C
Confidence 4
No 398
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=27.02 E-value=1.6e+02 Score=24.66 Aligned_cols=65 Identities=8% Similarity=0.138 Sum_probs=41.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+-+.|+++.-.. ........++.+|.++..+- .++..+...++.+.+.. ..++.++.|+.+
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~-----------~s~~~~~~~~~~l~~~~---~~~~~iviN~~~ 174 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEV-----------SAVRDADRVIGLLEAKG---IEKIHLIVNRLR 174 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCc-----------HHHHHHHHHHHHHHHcC---CCceEEEEeCcC
Confidence 467889999886432 23344567899998887763 45555555444443322 235778889987
Q ss_pred h
Q psy6623 181 L 181 (262)
Q Consensus 181 l 181 (262)
-
T Consensus 175 ~ 175 (261)
T TIGR01968 175 P 175 (261)
T ss_pred c
Confidence 4
No 399
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=26.81 E-value=1.4e+02 Score=23.03 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=29.6
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILF 175 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~ 175 (262)
+.-+|.||.+-++. ..+..++..|+..+++ .+|.+.++|++.=
T Consensus 82 eq~dGti~Amc~tg-------~~~~~sL~~WI~~Lq~--~NP~L~~ipV~Fr 124 (126)
T PF14784_consen 82 EQEDGTIFAMCMTG-------TSDKDSLLSWIRGLQE--TNPNLAQIPVLFR 124 (126)
T ss_pred EeccceEEEEEecc-------CCCHHHHHHHHHHHHh--hCCchhcceEEEE
Confidence 34567788776665 1225677777777777 5788999999864
No 400
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.67 E-value=1e+02 Score=28.32 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=54.5
Q ss_pred CCCCCcCccccceeeecccceeEEEEe-----------eeccceeeeecCCccccchhh---hccc---cCCCEEEEeee
Q psy6623 72 AKEYQPTEQDILRTRVKTTGIVEVHFS-----------FKNLNFKLFDVGGQRSERKKW---IHCF---EDVTAIIFCVA 134 (262)
Q Consensus 72 ~~~y~pt~~Dil~~~~pT~Gi~~~~~~-----------~~~~~~~i~D~~Gq~~~r~~w---~~~f---~~~~~iIfv~d 134 (262)
...|.+...+-++.+....|+...... +.+..+.++||+|........ ...+ ....-+++|++
T Consensus 175 ~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLs 254 (374)
T PRK14722 175 TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN 254 (374)
T ss_pred cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEec
Confidence 344555444455444444455443322 235678899999976433221 1122 23345678888
Q ss_pred ccccccccccCcccccHHHHHHHHHHHHhCCCCCCC-eEEEEeeCCchh
Q psy6623 135 MSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT-SIILFLNKKDLF 182 (262)
Q Consensus 135 ls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~-piil~~NK~Dl~ 182 (262)
.+. ..+.+.+....|......+...-. +-=++++|.|-.
T Consensus 255 Ats---------~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 255 ATS---------HGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred Ccc---------ChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 775 145566777777776533321111 123567999964
No 401
>KOG4273|consensus
Probab=24.60 E-value=76 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=25.6
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE-EEEeeCCchhh
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI-ILFLNKKDLFE 183 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi-il~~NK~Dl~~ 183 (262)
+...+.+.|+|+|. ...+. ++ +..+.+.....--| +-++||.|...
T Consensus 77 ~pl~a~vmvfdlse----------~s~l~-al---qdwl~htdinsfdillcignkvdrvp 123 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSE----------KSGLD-AL---QDWLPHTDINSFDILLCIGNKVDRVP 123 (418)
T ss_pred cceeeEEEEEeccc----------hhhhH-HH---Hhhccccccccchhheeccccccccc
Confidence 45678899999997 33332 22 22333322233333 44589999644
No 402
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.21 E-value=2.2e+02 Score=20.28 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=28.3
Q ss_pred hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEE
Q psy6623 118 KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILF 175 (262)
Q Consensus 118 ~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~ 175 (262)
....-...+|.||++.|..+ +.+....+..+.. .++|++.+
T Consensus 41 ~l~~~i~~aD~VIv~t~~vs--------------H~~~~~vk~~akk---~~ip~~~~ 81 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVS--------------HNAMWKVKKAAKK---YGIPIIYS 81 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcC--------------hHHHHHHHHHHHH---cCCcEEEE
Confidence 45666788999999999887 4455555555543 35777765
No 403
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.07 E-value=1.5e+02 Score=24.03 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=34.3
Q ss_pred EEEeeeccccccccccCcccccHHHHHHHHHHHHhC----CCCCCCeEEEE-eeCC
Q psy6623 129 IIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN----KWFTDTSIILF-LNKK 179 (262)
Q Consensus 129 iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~----~~~~~~piil~-~NK~ 179 (262)
+++++|+|. ....+|-.++|++.++.....+++. .....+.++++ ....
T Consensus 6 ivi~lD~S~--SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a 59 (183)
T cd01453 6 LIIVIDCSR--SMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRA 59 (183)
T ss_pred EEEEEECcH--HHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCcc
Confidence 678999987 3555666678999999999888863 22345677777 3434
No 404
>PHA03260 Capsid triplex subunit 2; Provisional
Probab=23.10 E-value=1.3e+02 Score=26.54 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCC
Q psy6623 26 PFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKE 74 (262)
Q Consensus 26 ~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~ 74 (262)
..+|.....|+.||+|+.++.++. |+...-++.++|+.+..
T Consensus 255 n~dP~tL~ei~~lw~d~~vadLf~--------Dgm~~gvd~~kr~k~~T 295 (339)
T PHA03260 255 NAEPPSLDEMKGLIADAKLKMLMC--------DGMAAMVDYYKLIKQDT 295 (339)
T ss_pred CCCchHHHHHHHHhcCHHHHHHHH--------HHHHHHHHHHHHHhcCc
Confidence 678899999999999999999664 56666666677776543
No 405
>KOG1086|consensus
Probab=23.05 E-value=80 Score=29.65 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.7
Q ss_pred cchhH-HHhhccccCCCCCCc
Q psy6623 58 DSAKY-FLDDLDRLGAKEYQP 77 (262)
Q Consensus 58 d~~~y-fl~~l~ri~~~~y~p 77 (262)
+.++| ||+.+-|+.+|.|.=
T Consensus 83 evgkfrFLNELIkvvsPKYlG 103 (594)
T KOG1086|consen 83 EVGKFRFLNELIKVVSPKYLG 103 (594)
T ss_pred HHHHHHHHHHHHHHhCchhcc
Confidence 45666 999999999999964
No 406
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=22.96 E-value=2.6e+02 Score=23.80 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=38.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-IILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-iil~~NK 178 (262)
+++.+-+.|++|.-..... ..-+.-++.+|.++..+- .++.....+.+.+.......+.+ ..|+.|+
T Consensus 114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~~-----------~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~ 181 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAANDF-----------DALFAANRIAASVQEKAKNYDVRLAGIIGNR 181 (268)
T ss_pred ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCch-----------hHHHHHHHHHHHHHHHhhcCCCceEEEEEeC
Confidence 4578899999875321111 123567888888776542 34444444433332211112444 3577899
Q ss_pred Cchh
Q psy6623 179 KDLF 182 (262)
Q Consensus 179 ~Dl~ 182 (262)
.+-.
T Consensus 182 ~~~~ 185 (268)
T TIGR01281 182 SDAT 185 (268)
T ss_pred CChH
Confidence 8753
No 407
>KOG0099|consensus
Probab=22.77 E-value=33 Score=30.17 Aligned_cols=31 Identities=55% Similarity=0.789 Sum_probs=24.7
Q ss_pred ceeeeeehhhHHHhhccC--CCccccCCCCCCC
Q psy6623 229 SIILFLNKKDLFEEKIKK--SPLTICFPEYAGP 259 (262)
Q Consensus 229 ~~I~~~f~~~lL~~~i~~--~~l~~~~~~~~~~ 259 (262)
.-|..+.+.++|.+|+.. +.+.++||+|.+.
T Consensus 271 svIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y 303 (379)
T KOG0099|consen 271 SVILFLNKQDLLAEKILAGKSKIEDYFPEFARY 303 (379)
T ss_pred heeEEecHHHHHHHHHHcchhhHHHhChHHhcc
Confidence 447778888999999974 4689999998764
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=22.25 E-value=1.8e+02 Score=27.32 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=22.8
Q ss_pred ccceeeeecCCccccchhhh------ccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSERKKWI------HCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~------~~f~~~~~iIfv~dls~ 137 (262)
+..+-+.||+|.-....... ...-..+.+++|+|.+.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 45688999999533211111 11234778899999764
No 409
>PRK13685 hypothetical protein; Provisional
Probab=21.81 E-value=2.4e+02 Score=25.17 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=38.0
Q ss_pred cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CCCCCCeEEEEeeCCc
Q psy6623 124 EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KWFTDTSIILFLNKKD 180 (262)
Q Consensus 124 ~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~~~~~piil~~NK~D 180 (262)
+....+++|+|.|. ++..+|...+|+..++.....+++. +.-..+.++.+.....
T Consensus 86 ~~~~~vvlvlD~S~--SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~ 141 (326)
T PRK13685 86 RNRAVVMLVIDVSQ--SMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTAT 141 (326)
T ss_pred CCCceEEEEEECCc--cccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCcee
Confidence 34456889999987 3444555568999999998888876 2334567777766544
No 410
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=21.29 E-value=1.7e+02 Score=26.23 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=37.4
Q ss_pred eccceeeeecCCccccch-------hhhcc-----ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 100 KNLNFKLFDVGGQRSERK-------KWIHC-----FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~-------~w~~~-----f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
++..+-+.||+|.-.... +.... -...+.+++|+|.+. ..+.+.++ ..|.+.+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---------g~~~~~~a-~~f~~~~----- 259 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---------GQNALSQA-KAFHEAV----- 259 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---------ChHHHHHH-HHHHhhC-----
Confidence 456789999999743211 11111 124678899999885 13444444 2222221
Q ss_pred CCCeEEEEeeCCchh
Q psy6623 168 TDTSIILFLNKKDLF 182 (262)
Q Consensus 168 ~~~piil~~NK~Dl~ 182 (262)
-+--+++||.|..
T Consensus 260 --~~~giIlTKlD~t 272 (318)
T PRK10416 260 --GLTGIILTKLDGT 272 (318)
T ss_pred --CCCEEEEECCCCC
Confidence 1235788999953
No 411
>CHL00175 minD septum-site determining protein; Validated
Probab=21.17 E-value=2.6e+02 Score=24.05 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=41.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+-|+|+++.-. ......+..++.+|+|+..+- .++..+....+.+.... ...+-++.|+.+
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~-----------~si~~~~~~~~~l~~~~---~~~~~lvvN~~~ 189 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEI-----------TAIRDADRVAGLLEANG---IYNVKLLVNRVR 189 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCCh-----------HHHHHHHHHHHHHHHcC---CCceEEEEeccC
Confidence 46788999998643 233445567899998887663 55665555554444321 124567789987
Q ss_pred h
Q psy6623 181 L 181 (262)
Q Consensus 181 l 181 (262)
-
T Consensus 190 ~ 190 (281)
T CHL00175 190 P 190 (281)
T ss_pred h
Confidence 4
No 412
>PRK14974 cell division protein FtsY; Provisional
Probab=21.03 E-value=1.8e+02 Score=26.32 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=37.0
Q ss_pred ccceeeeecCCccccch-hh---hccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 101 NLNFKLFDVGGQRSERK-KW---IHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-~w---~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
+..+-+.||+|.-.... +. .... -+.+.+++|+|.+. .+...+....|...+. .--+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~----------g~d~~~~a~~f~~~~~-------~~gi 284 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA----------GNDAVEQAREFNEAVG-------IDGV 284 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc----------chhHHHHHHHHHhcCC-------CCEE
Confidence 46688999999754221 11 1111 24678899999875 2322222334433221 2356
Q ss_pred EeeCCchhh
Q psy6623 175 FLNKKDLFE 183 (262)
Q Consensus 175 ~~NK~Dl~~ 183 (262)
++||.|...
T Consensus 285 IlTKlD~~~ 293 (336)
T PRK14974 285 ILTKVDADA 293 (336)
T ss_pred EEeeecCCC
Confidence 789999743
No 413
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=20.69 E-value=2.1e+02 Score=28.00 Aligned_cols=55 Identities=15% Similarity=0.334 Sum_probs=37.2
Q ss_pred ccCCCEEEEeeeccccccccc---cCcccccHHHHHHHHHHHHhCCCC----CCCeEEEEeeCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLH---EDETTNRMQESLKLFDSICNNKWF----TDTSIILFLNKK 179 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~---e~~~~~~l~e~~~~~~~i~~~~~~----~~~piil~~NK~ 179 (262)
|.+-+||||++|+|. .+.. +.+....+.++++....++..... ..+.+++++++.
T Consensus 7 ~~~keailflIDvs~--sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~ 68 (584)
T TIGR00578 7 YSGRDSLIFLVDASK--AMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEK 68 (584)
T ss_pred ccceeEEEEEEECCH--HHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccC
Confidence 355689999999996 2221 112356788998888888876443 346788888753
No 414
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.51 E-value=2.2e+02 Score=23.43 Aligned_cols=37 Identities=8% Similarity=0.222 Sum_probs=22.2
Q ss_pred ccceeeeecCCccccch----hhhccc--cCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSERK----KWIHCF--EDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~----~w~~~f--~~~~~iIfv~dls~ 137 (262)
+..+-+.||+|...... .+..+. -..+-+++|+|.+.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 36688999999644221 112222 14667888999886
Done!