Query psy6623
Match_columns 262
No_of_seqs 313 out of 2372
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:57:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 100.0 1.8E-58 6.1E-63 410.7 16.6 233 3-237 70-311 (327)
2 4fid_A G protein alpha subunit 100.0 3.5E-56 1.2E-60 397.4 12.9 215 23-237 82-321 (340)
3 1cip_A Protein (guanine nucleo 100.0 4.9E-54 1.7E-58 386.8 16.2 234 3-237 95-337 (353)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 5.1E-54 1.8E-58 387.9 13.4 234 3-237 96-346 (362)
5 1azs_C GS-alpha; complex (lyas 100.0 2E-53 6.7E-58 387.4 16.3 233 3-237 120-378 (402)
6 2xtz_A Guanine nucleotide-bind 100.0 5.9E-52 2E-56 373.3 12.1 233 4-237 80-338 (354)
7 4dkx_A RAS-related protein RAB 99.8 4.6E-21 1.6E-25 161.1 7.4 123 87-237 43-169 (216)
8 1f6b_A SAR1; gtpases, N-termin 99.8 5.3E-19 1.8E-23 145.7 7.2 141 86-243 53-196 (198)
9 1r8s_A ADP-ribosylation factor 99.8 1.3E-18 4.6E-23 137.7 9.1 131 87-244 29-160 (164)
10 1fzq_A ADP-ribosylation factor 99.8 2.2E-18 7.7E-23 139.8 10.4 132 86-244 44-176 (181)
11 1upt_A ARL1, ADP-ribosylation 99.8 3.7E-18 1.3E-22 135.9 10.4 132 87-245 36-168 (171)
12 2x77_A ADP-ribosylation factor 99.7 2E-18 6.7E-23 140.5 8.4 132 86-244 50-182 (189)
13 1m2o_B GTP-binding protein SAR 99.7 2.8E-18 9.5E-23 140.4 9.0 133 87-236 52-184 (190)
14 1zj6_A ADP-ribosylation factor 99.7 3.5E-18 1.2E-22 138.9 9.3 134 86-246 44-178 (187)
15 4bas_A ADP-ribosylation factor 99.7 5E-18 1.7E-22 138.7 9.9 126 87-237 48-182 (199)
16 2b6h_A ADP-ribosylation factor 99.7 2.6E-18 8.8E-23 140.8 8.0 128 86-244 57-189 (192)
17 1ksh_A ARF-like protein 2; sma 99.7 8.6E-18 2.9E-22 136.2 10.9 129 86-245 46-179 (186)
18 2h57_A ADP-ribosylation factor 99.7 9.5E-18 3.3E-22 136.6 10.3 132 87-245 52-186 (190)
19 2h17_A ADP-ribosylation factor 99.7 1.1E-17 3.6E-22 135.5 9.3 127 85-236 48-175 (181)
20 1zd9_A ADP-ribosylation factor 99.7 6.3E-18 2.1E-22 137.8 7.8 132 87-245 52-184 (188)
21 3t1o_A Gliding protein MGLA; G 99.7 6.7E-18 2.3E-22 137.4 7.1 151 62-237 29-185 (198)
22 1moz_A ARL1, ADP-ribosylation 99.7 1.4E-17 4.7E-22 134.3 7.8 128 85-237 45-173 (183)
23 2hup_A RAS-related protein RAB 99.7 1.9E-17 6.5E-22 136.6 7.5 123 87-237 59-186 (201)
24 3r7w_B Gtpase2, GTP-binding pr 99.7 6.2E-18 2.1E-22 149.6 4.6 125 86-237 31-167 (331)
25 2fu5_C RAS-related protein RAB 99.7 4.1E-17 1.4E-21 131.7 7.7 123 87-237 38-164 (183)
26 1r2q_A RAS-related protein RAB 99.7 1.3E-16 4.5E-21 126.4 10.5 115 100-244 53-167 (170)
27 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-16 3.9E-21 149.6 11.7 130 87-247 351-485 (497)
28 2hxs_A RAB-26, RAS-related pro 99.7 3.1E-17 1.1E-21 131.6 6.5 131 87-246 36-173 (178)
29 1ek0_A Protein (GTP-binding pr 99.7 2.5E-16 8.5E-21 124.8 10.3 131 87-244 33-167 (170)
30 3bc1_A RAS-related protein RAB 99.7 1.2E-16 4.2E-21 129.4 8.5 110 101-237 69-178 (195)
31 3l82_B F-box only protein 4; T 99.7 5.5E-18 1.9E-22 140.0 0.3 111 108-246 108-223 (227)
32 2fg5_A RAB-22B, RAS-related pr 99.7 3.3E-16 1.1E-20 127.9 10.7 129 87-245 53-185 (192)
33 2efe_B Small GTP-binding prote 99.7 2.4E-16 8.3E-21 126.6 9.7 130 87-246 42-175 (181)
34 1x3s_A RAS-related protein RAB 99.7 1.4E-16 4.8E-21 129.5 8.2 128 87-244 45-176 (195)
35 2g6b_A RAS-related protein RAB 99.7 1.4E-16 4.8E-21 127.9 8.1 128 87-244 41-172 (180)
36 3tw8_B RAS-related protein RAB 99.7 3.7E-16 1.3E-20 125.2 10.5 122 87-237 39-164 (181)
37 3t5g_A GTP-binding protein RHE 99.7 2.6E-16 8.8E-21 126.8 9.5 110 101-237 53-162 (181)
38 3o47_A ADP-ribosylation factor 99.7 1.7E-16 5.7E-21 141.2 9.0 121 87-236 194-319 (329)
39 1c1y_A RAS-related protein RAP 99.7 1.5E-16 5.1E-21 125.9 7.7 115 100-243 49-164 (167)
40 1zbd_A Rabphilin-3A; G protein 99.7 4.1E-16 1.4E-20 128.1 10.3 123 87-237 38-164 (203)
41 2f7s_A C25KG, RAS-related prot 99.7 9.9E-17 3.4E-21 133.3 6.6 110 101-237 83-192 (217)
42 1u8z_A RAS-related protein RAL 99.7 1.8E-16 6E-21 125.3 7.7 109 101-236 51-159 (168)
43 3reg_A RHO-like small GTPase; 99.7 3.5E-16 1.2E-20 127.7 9.7 112 100-237 69-181 (194)
44 2fn4_A P23, RAS-related protei 99.7 1.6E-16 5.4E-21 127.4 7.5 110 101-237 56-165 (181)
45 3oes_A GTPase rhebl1; small GT 99.7 1.8E-16 6.2E-21 130.4 8.0 111 100-237 70-180 (201)
46 2yc2_C IFT27, small RAB-relate 99.7 2.3E-16 7.8E-21 129.6 8.6 124 87-237 52-185 (208)
47 2a5j_A RAS-related protein RAB 99.7 1.9E-16 6.5E-21 129.1 8.0 123 87-237 51-177 (191)
48 3q3j_B RHO-related GTP-binding 99.7 1.8E-16 6.1E-21 132.2 7.9 121 100-237 73-196 (214)
49 3cpj_B GTP-binding protein YPT 99.7 2.9E-16 9.8E-21 131.5 9.2 123 87-237 43-169 (223)
50 2gf9_A RAS-related protein RAB 99.7 3.9E-16 1.3E-20 126.9 9.7 123 87-237 52-178 (189)
51 2ew1_A RAS-related protein RAB 99.6 3.5E-16 1.2E-20 129.4 9.4 123 87-237 56-182 (201)
52 1z06_A RAS-related protein RAB 99.6 2E-16 6.9E-21 128.6 7.7 123 87-236 50-180 (189)
53 2bme_A RAB4A, RAS-related prot 99.6 2.4E-16 8.1E-21 127.4 7.9 123 87-237 40-166 (186)
54 2oil_A CATX-8, RAS-related pro 99.6 4.7E-16 1.6E-20 126.8 9.6 123 87-237 55-181 (193)
55 3q72_A GTP-binding protein RAD 99.6 3.4E-16 1.2E-20 124.0 8.1 111 100-237 47-157 (166)
56 3l0i_B RAS-related protein RAB 99.6 1.2E-16 4E-21 131.3 5.4 128 87-244 63-194 (199)
57 3dz8_A RAS-related protein RAB 99.6 1.1E-16 3.6E-21 130.6 5.1 123 87-237 53-179 (191)
58 2y8e_A RAB-protein 6, GH09086P 99.6 5E-16 1.7E-20 124.2 8.9 128 87-244 44-175 (179)
59 3kkq_A RAS-related protein M-R 99.6 2E-16 7E-21 127.5 6.6 110 101-237 65-175 (183)
60 1z0f_A RAB14, member RAS oncog 99.6 4.2E-16 1.5E-20 124.7 8.4 109 100-236 62-170 (179)
61 2bcg_Y Protein YP2, GTP-bindin 99.6 5.7E-16 1.9E-20 127.6 9.2 123 87-237 38-164 (206)
62 2a9k_A RAS-related protein RAL 99.6 4.1E-16 1.4E-20 125.6 8.2 110 101-237 65-174 (187)
63 1z0j_A RAB-22, RAS-related pro 99.6 1.2E-15 4.1E-20 121.0 10.7 128 87-244 36-167 (170)
64 1z08_A RAS-related protein RAB 99.6 3.6E-16 1.2E-20 124.2 7.7 122 87-236 36-161 (170)
65 1z2a_A RAS-related protein RAB 99.6 4E-16 1.4E-20 123.5 7.9 121 87-236 35-159 (168)
66 2o52_A RAS-related protein RAB 99.6 2.9E-16 9.8E-21 129.3 7.2 123 87-237 55-181 (200)
67 3tkl_A RAS-related protein RAB 99.6 6.2E-16 2.1E-20 125.9 8.6 123 87-237 46-172 (196)
68 1kao_A RAP2A; GTP-binding prot 99.6 4.7E-16 1.6E-20 122.7 7.1 109 101-236 50-158 (167)
69 2bov_A RAla, RAS-related prote 99.6 7.2E-16 2.5E-20 126.5 8.3 110 101-237 61-170 (206)
70 2il1_A RAB12; G-protein, GDP, 99.6 1.1E-15 3.6E-20 125.0 8.8 123 87-237 56-183 (192)
71 3q85_A GTP-binding protein REM 99.6 7.8E-16 2.7E-20 122.2 7.7 110 101-237 50-160 (169)
72 3ihw_A Centg3; RAS, centaurin, 99.6 7.7E-16 2.6E-20 125.2 7.8 113 95-237 58-173 (184)
73 2p5s_A RAS and EF-hand domain 99.6 5.6E-16 1.9E-20 127.2 6.9 134 87-244 58-195 (199)
74 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.9E-16 6.6E-21 126.8 3.9 123 87-237 37-167 (177)
75 3cbq_A GTP-binding protein REM 99.6 7.3E-16 2.5E-20 126.6 7.3 110 101-237 71-181 (195)
76 2nzj_A GTP-binding protein REM 99.6 1.5E-15 5.1E-20 121.2 8.9 110 101-237 51-162 (175)
77 1ky3_A GTP-binding protein YPT 99.6 9.3E-16 3.2E-20 123.0 7.7 125 87-237 38-171 (182)
78 3c5c_A RAS-like protein 12; GD 99.6 7.9E-16 2.7E-20 125.3 7.3 110 100-237 67-179 (187)
79 2atv_A RERG, RAS-like estrogen 99.6 1E-15 3.5E-20 125.2 7.8 110 100-237 74-184 (196)
80 2erx_A GTP-binding protein DI- 99.6 1.6E-15 5.5E-20 120.3 8.7 118 100-246 49-167 (172)
81 2atx_A Small GTP binding prote 99.6 1E-15 3.5E-20 124.8 7.4 119 102-237 66-186 (194)
82 2q3h_A RAS homolog gene family 99.6 1.5E-15 5.1E-20 124.5 8.1 120 101-237 67-188 (201)
83 4djt_A GTP-binding nuclear pro 99.6 3.4E-15 1.1E-19 124.1 10.0 124 86-237 40-168 (218)
84 3gj0_A GTP-binding nuclear pro 99.6 1.3E-15 4.4E-20 127.1 7.4 120 86-236 44-167 (221)
85 2j0v_A RAC-like GTP-binding pr 99.6 1.6E-15 5.5E-20 125.5 7.5 116 101-237 56-173 (212)
86 1g16_A RAS-related protein SEC 99.6 1.5E-15 5.1E-20 120.4 7.0 122 87-237 33-158 (170)
87 3l2o_B F-box only protein 4; s 99.6 4E-16 1.4E-20 134.8 3.4 111 108-246 193-308 (312)
88 2gco_A H9, RHO-related GTP-bin 99.6 1.6E-15 5.3E-20 124.9 6.8 120 101-236 72-192 (201)
89 2g3y_A GTP-binding protein GEM 99.6 4E-15 1.4E-19 124.2 9.3 110 101-237 86-196 (211)
90 3cph_A RAS-related protein SEC 99.6 3.5E-15 1.2E-19 123.1 8.9 122 87-237 50-175 (213)
91 2fh5_B SR-beta, signal recogni 99.6 2.6E-15 9E-20 124.4 7.8 87 89-184 38-130 (214)
92 4dsu_A GTPase KRAS, isoform 2B 99.6 2.3E-15 7.8E-20 121.6 7.2 109 101-237 51-159 (189)
93 1vg8_A RAS-related protein RAB 99.6 2.9E-15 9.8E-20 123.1 7.8 123 87-237 38-168 (207)
94 3clv_A RAB5 protein, putative; 99.6 3.4E-15 1.2E-19 121.5 8.2 105 102-237 93-197 (208)
95 1mh1_A RAC1; GTP-binding, GTPa 99.6 5.4E-15 1.9E-19 119.0 8.9 126 100-244 51-178 (186)
96 1m7b_A RND3/RHOE small GTP-bin 99.6 4.3E-15 1.5E-19 120.3 7.9 120 101-237 54-176 (184)
97 2fv8_A H6, RHO-related GTP-bin 99.6 3.5E-15 1.2E-19 123.3 7.4 120 101-237 72-193 (207)
98 3bwd_D RAC-like GTP-binding pr 99.6 2.2E-15 7.5E-20 121.1 5.8 117 101-236 55-173 (182)
99 1gwn_A RHO-related GTP-binding 99.5 9.3E-15 3.2E-19 121.0 8.4 120 101-237 75-197 (205)
100 2j1l_A RHO-related GTP-binding 99.5 5.6E-15 1.9E-19 122.9 6.2 121 100-237 80-202 (214)
101 4gzl_A RAS-related C3 botulinu 99.5 6.8E-15 2.3E-19 121.5 6.5 119 101-236 77-197 (204)
102 2lkc_A Translation initiation 99.5 1E-14 3.5E-19 116.7 6.9 115 93-237 46-164 (178)
103 2ce2_X GTPase HRAS; signaling 99.5 1.2E-14 4.3E-19 114.2 7.1 108 101-236 50-157 (166)
104 2gf0_A GTP-binding protein DI- 99.5 7.2E-15 2.5E-19 119.8 5.7 116 100-245 54-170 (199)
105 3con_A GTPase NRAS; structural 99.5 2E-14 6.9E-19 116.5 8.2 109 101-237 68-176 (190)
106 2iwr_A Centaurin gamma 1; ANK 99.5 1.3E-14 4.3E-19 116.4 6.9 106 101-237 53-162 (178)
107 2cjw_A GTP-binding protein GEM 99.5 2.9E-14 9.8E-19 116.7 9.0 110 101-237 55-165 (192)
108 2zej_A Dardarin, leucine-rich 99.5 3.8E-15 1.3E-19 120.8 3.3 124 87-237 34-171 (184)
109 1u0l_A Probable GTPase ENGC; p 99.5 3.1E-14 1.1E-18 125.1 7.8 117 87-237 48-166 (301)
110 3th5_A RAS-related C3 botulinu 99.2 2.3E-15 8E-20 123.9 0.0 121 100-237 76-198 (204)
111 3llu_A RAS-related GTP-binding 99.5 1E-13 3.5E-18 113.4 8.7 120 100-237 67-190 (196)
112 3c5h_A Glucocorticoid receptor 99.5 1.6E-14 5.4E-19 123.8 3.1 108 100-236 93-247 (255)
113 2wkq_A NPH1-1, RAS-related C3 99.4 9.8E-14 3.3E-18 122.1 6.9 120 101-237 202-323 (332)
114 3r7w_A Gtpase1, GTP-binding pr 99.4 1.9E-13 6.5E-18 120.3 8.7 125 87-237 36-174 (307)
115 2wji_A Ferrous iron transport 99.4 3.6E-13 1.2E-17 107.1 8.5 109 93-236 41-157 (165)
116 2dyk_A GTP-binding protein; GT 99.4 3.5E-13 1.2E-17 105.8 7.0 108 92-236 39-154 (161)
117 2f9l_A RAB11B, member RAS onco 99.4 1E-12 3.5E-17 107.7 8.6 123 87-237 35-161 (199)
118 2gj8_A MNME, tRNA modification 99.4 3.8E-13 1.3E-17 108.0 4.8 115 91-244 41-164 (172)
119 3dpu_A RAB family protein; roc 99.4 5.7E-13 1.9E-17 125.7 6.7 105 101-237 97-201 (535)
120 2qu8_A Putative nucleolar GTP- 99.3 1.8E-12 6E-17 108.7 8.2 122 89-237 63-198 (228)
121 1oix_A RAS-related protein RAB 99.3 3.8E-12 1.3E-16 103.9 8.8 122 87-236 59-184 (191)
122 2wjg_A FEOB, ferrous iron tran 99.3 3.1E-12 1.1E-16 103.2 7.5 116 93-245 45-168 (188)
123 1nrj_B SR-beta, signal recogni 99.3 2.3E-13 7.8E-18 112.9 0.1 74 100-183 53-134 (218)
124 1svi_A GTP-binding protein YSX 99.3 2.2E-12 7.5E-17 104.7 5.3 111 101-243 68-192 (195)
125 2cxx_A Probable GTP-binding pr 99.3 7.7E-13 2.6E-17 106.8 1.9 108 103-237 45-177 (190)
126 3b1v_A Ferrous iron uptake tra 99.2 1.8E-11 6.2E-16 105.9 8.0 102 101-237 48-157 (272)
127 3pqc_A Probable GTP-binding pr 99.2 1.1E-11 3.8E-16 100.1 6.0 113 100-244 66-192 (195)
128 4dhe_A Probable GTP-binding pr 99.2 1.2E-11 4.1E-16 102.7 5.3 115 99-245 76-210 (223)
129 3iby_A Ferrous iron transport 99.2 2.4E-11 8.1E-16 104.2 5.8 111 92-237 38-160 (256)
130 3qq5_A Small GTP-binding prote 99.2 3.6E-11 1.2E-15 110.1 7.2 118 89-245 69-195 (423)
131 3a1s_A Iron(II) transport prot 99.2 3.6E-11 1.2E-15 103.2 6.8 111 92-237 42-160 (258)
132 3i8s_A Ferrous iron transport 99.2 4.8E-11 1.6E-15 103.2 7.4 117 92-245 40-168 (274)
133 3iev_A GTP-binding protein ERA 99.1 1.4E-10 4.8E-15 101.9 9.9 122 94-246 50-182 (308)
134 2ged_A SR-beta, signal recogni 99.1 1.3E-11 4.5E-16 100.0 1.8 74 100-183 89-170 (193)
135 4dcu_A GTP-binding protein ENG 99.1 9.1E-11 3.1E-15 108.6 7.3 114 95-237 236-362 (456)
136 1zun_B Sulfate adenylate trans 99.1 2.9E-10 9.8E-15 104.6 10.1 120 88-237 90-217 (434)
137 3k53_A Ferrous iron transport 99.1 4.2E-10 1.4E-14 96.9 10.3 112 92-237 40-159 (271)
138 3gee_A MNME, tRNA modification 99.1 1.2E-10 4E-15 108.4 6.9 119 91-244 270-396 (476)
139 2hjg_A GTP-binding protein ENG 99.1 9.4E-11 3.2E-15 107.9 5.4 108 93-237 42-158 (436)
140 1mky_A Probable GTP-binding pr 99.1 1.6E-10 5.6E-15 106.4 7.0 111 92-237 39-159 (439)
141 1r5b_A Eukaryotic peptide chai 99.1 1.4E-10 4.8E-15 107.7 6.2 135 86-236 105-244 (467)
142 1zo1_I IF2, translation initia 99.0 1.2E-10 4.2E-15 108.6 5.1 111 97-237 46-160 (501)
143 3izy_P Translation initiation 99.0 1.2E-10 4.3E-15 109.4 5.1 108 100-237 50-161 (537)
144 1lnz_A SPO0B-associated GTP-bi 99.0 3.1E-10 1.1E-14 101.2 7.4 124 96-247 199-331 (342)
145 1wf3_A GTP-binding protein; GT 99.0 5.9E-10 2E-14 97.7 8.8 114 98-245 51-172 (301)
146 1jny_A EF-1-alpha, elongation 99.0 4.1E-10 1.4E-14 103.6 7.9 125 87-236 69-205 (435)
147 2hjg_A GTP-binding protein ENG 99.0 1.3E-10 4.5E-15 106.9 4.5 115 94-237 215-342 (436)
148 3j2k_7 ERF3, eukaryotic polype 99.0 4.1E-10 1.4E-14 103.7 6.8 131 87-236 80-217 (439)
149 3cb4_D GTP-binding protein LEP 99.0 6E-10 2E-14 106.2 7.3 124 89-245 53-181 (599)
150 3tr5_A RF-3, peptide chain rel 99.0 1E-09 3.4E-14 103.3 8.7 81 88-183 68-148 (528)
151 3p26_A Elongation factor 1 alp 99.0 8.1E-10 2.8E-14 102.9 7.7 128 88-236 97-230 (483)
152 1f60_A Elongation factor EEF1A 99.0 8.9E-10 3.1E-14 102.0 7.8 122 88-236 71-204 (458)
153 2e87_A Hypothetical protein PH 99.0 2.3E-09 7.8E-14 96.0 10.2 119 88-237 200-329 (357)
154 2ywe_A GTP-binding protein LEP 99.0 1.1E-09 3.9E-14 104.2 8.5 110 102-244 73-182 (600)
155 3sjy_A Translation initiation 99.0 6E-10 2.1E-14 101.4 6.2 113 102-244 75-190 (403)
156 1xzp_A Probable tRNA modificat 98.9 1E-09 3.5E-14 102.1 7.5 110 91-237 280-398 (482)
157 2elf_A Protein translation elo 98.9 6.9E-10 2.3E-14 100.0 5.6 121 85-237 43-173 (370)
158 1s0u_A EIF-2-gamma, translatio 98.9 1.4E-09 4.9E-14 99.1 7.5 113 102-244 81-196 (408)
159 1wb1_A Translation elongation 98.9 5.1E-10 1.7E-14 104.3 4.0 120 87-237 58-182 (482)
160 2c78_A Elongation factor TU-A; 98.9 2.3E-09 7.9E-14 97.6 7.5 79 89-182 62-141 (405)
161 1d2e_A Elongation factor TU (E 98.9 2.1E-09 7.2E-14 97.7 7.0 81 88-183 52-133 (397)
162 3geh_A MNME, tRNA modification 98.9 2E-09 6.8E-14 99.7 5.9 112 94-245 264-383 (462)
163 4dcu_A GTP-binding protein ENG 98.8 1.4E-09 4.8E-14 100.6 4.6 108 94-237 63-178 (456)
164 3izq_1 HBS1P, elongation facto 98.8 2.5E-09 8.6E-14 102.3 6.3 127 89-235 232-363 (611)
165 2h5e_A Peptide chain release f 98.8 6.5E-09 2.2E-13 97.8 9.0 118 88-237 68-188 (529)
166 3t5d_A Septin-7; GTP-binding p 98.8 8.4E-09 2.9E-13 88.9 8.9 126 87-244 46-202 (274)
167 2qtf_A Protein HFLX, GTP-bindi 98.8 5.3E-09 1.8E-13 94.0 6.6 129 87-244 211-352 (364)
168 1kk1_A EIF2gamma; initiation o 98.8 6.1E-09 2.1E-13 94.9 7.0 113 102-244 83-198 (410)
169 1g7s_A Translation initiation 98.8 7.2E-09 2.5E-13 98.7 6.1 66 103-183 71-136 (594)
170 2aka_B Dynamin-1; fusion prote 98.7 1.4E-08 4.9E-13 87.9 6.8 106 101-237 124-246 (299)
171 2xtp_A GTPase IMAP family memb 98.7 2.8E-08 9.5E-13 84.6 6.9 130 89-237 58-201 (260)
172 3lxx_A GTPase IMAP family memb 98.7 2.2E-08 7.5E-13 84.2 6.1 85 89-184 65-160 (239)
173 1mky_A Probable GTP-binding pr 98.7 3.5E-08 1.2E-12 90.7 7.6 115 95-237 221-348 (439)
174 3mca_A HBS1, elongation factor 98.7 6.1E-09 2.1E-13 99.3 2.6 124 88-235 241-374 (592)
175 2yv5_A YJEQ protein; hydrolase 98.6 2.5E-08 8.7E-13 87.3 5.9 97 111-237 65-162 (302)
176 3avx_A Elongation factor TS, e 98.6 2.7E-08 9.2E-13 100.2 6.6 74 95-183 352-426 (1289)
177 2qag_A Septin-2, protein NEDD5 98.6 3E-08 1E-12 89.0 5.9 119 87-237 76-226 (361)
178 1ega_A Protein (GTP-binding pr 98.5 2.4E-07 8.3E-12 80.9 8.7 114 97-245 51-174 (301)
179 2dy1_A Elongation factor G; tr 98.5 1.8E-07 6.2E-12 90.3 8.4 79 89-182 61-139 (665)
180 1dar_A EF-G, elongation factor 98.5 1.5E-07 5.2E-12 91.2 7.1 84 85-183 60-143 (691)
181 1n0u_A EF-2, elongation factor 98.5 2E-07 6.9E-12 92.2 7.7 68 101-183 97-164 (842)
182 3lxw_A GTPase IMAP family memb 98.5 3.5E-07 1.2E-11 77.6 7.5 86 88-183 56-153 (247)
183 3h2y_A GTPase family protein; 98.4 4.6E-08 1.6E-12 88.0 1.6 96 111-237 55-153 (368)
184 2xex_A Elongation factor G; GT 98.4 3E-07 1E-11 89.2 7.2 83 86-183 59-141 (693)
185 3def_A T7I23.11 protein; chlor 98.4 1.5E-07 5.1E-12 80.5 4.5 84 89-182 71-164 (262)
186 2rdo_7 EF-G, elongation factor 98.4 3.2E-07 1.1E-11 89.1 7.1 83 86-183 59-148 (704)
187 3ec1_A YQEH GTPase; atnos1, at 98.4 4.8E-08 1.7E-12 87.9 1.0 99 108-237 54-155 (369)
188 3t34_A Dynamin-related protein 98.3 4.3E-07 1.5E-11 81.2 4.4 70 101-183 135-217 (360)
189 1pui_A ENGB, probable GTP-bind 98.2 2.2E-06 7.7E-11 69.8 7.6 116 97-245 68-198 (210)
190 1h65_A Chloroplast outer envel 98.1 2.1E-06 7.3E-11 73.4 5.2 79 95-183 80-168 (270)
191 2x2e_A Dynamin-1; nitration, h 98.1 1.8E-06 6.1E-11 77.0 4.4 107 101-237 129-251 (353)
192 2j69_A Bacterial dynamin-like 98.1 3.8E-06 1.3E-10 81.4 6.6 69 102-184 174-245 (695)
193 1yrb_A ATP(GTP)binding protein 98.1 2.3E-06 7.9E-11 72.4 4.1 72 101-183 108-185 (262)
194 1udx_A The GTP-binding protein 98.0 8.2E-06 2.8E-10 74.4 6.6 112 97-237 199-318 (416)
195 1jwy_B Dynamin A GTPase domain 98.0 7.9E-06 2.7E-10 71.1 5.6 71 100-183 129-212 (315)
196 2qnr_A Septin-2, protein NEDD5 97.9 1.1E-05 3.9E-10 70.2 5.0 103 102-237 76-207 (301)
197 2wsm_A Hydrogenase expression/ 97.8 3.7E-05 1.3E-09 63.1 7.3 106 100-244 107-212 (221)
198 2qpt_A EH domain-containing pr 97.8 1.4E-05 4.7E-10 75.5 4.6 68 102-183 154-232 (550)
199 3p32_A Probable GTPase RV1496/ 97.8 1.3E-05 4.3E-10 71.6 3.9 101 100-237 170-277 (355)
200 1wxq_A GTP-binding protein; st 97.8 1.3E-05 4.3E-10 72.7 3.9 37 101-137 70-113 (397)
201 3vqt_A RF-3, peptide chain rel 97.7 6.7E-05 2.3E-09 70.7 7.4 85 84-183 82-166 (548)
202 2qag_C Septin-7; cell cycle, c 97.5 0.00016 5.6E-09 65.8 6.9 54 169-237 167-220 (418)
203 1puj_A YLQF, conserved hypothe 97.4 0.00015 5E-09 62.7 4.8 93 109-237 6-99 (282)
204 3j25_A Tetracycline resistance 97.3 8.1E-05 2.8E-09 71.5 2.2 83 86-183 51-133 (638)
205 2p67_A LAO/AO transport system 97.2 0.0001 3.4E-09 65.3 1.9 100 100-237 147-254 (341)
206 2www_A Methylmalonic aciduria 97.0 0.00068 2.3E-08 60.2 5.7 101 100-237 165-272 (349)
207 4fn5_A EF-G 1, elongation fact 97.0 0.00087 3E-08 65.1 6.7 68 101-183 84-151 (709)
208 2dby_A GTP-binding protein; GD 97.0 0.0014 4.9E-08 58.6 7.1 37 101-137 68-111 (368)
209 1jal_A YCHF protein; nucleotid 97.0 0.0019 6.4E-08 57.7 7.8 36 102-137 66-108 (363)
210 3zvr_A Dynamin-1; hydrolase, D 96.7 0.001 3.6E-08 64.8 4.6 106 101-237 149-271 (772)
211 2hf9_A Probable hydrogenase ni 96.6 0.00076 2.6E-08 55.3 2.1 54 169-237 164-217 (226)
212 1t9h_A YLOQ, probable GTPase E 96.5 0.0036 1.2E-07 54.6 6.0 90 119-236 80-169 (307)
213 3cnl_A YLQF, putative uncharac 96.2 0.0011 3.8E-08 56.4 0.9 82 116-236 12-93 (262)
214 2ohf_A Protein OLA1, GTP-bindi 95.3 0.019 6.4E-07 51.8 5.2 38 102-139 86-130 (396)
215 2rcn_A Probable GTPase ENGC; Y 94.3 0.055 1.9E-06 48.0 5.6 51 169-235 160-210 (358)
216 2qm8_A GTPase/ATPase; G protei 93.8 0.012 4.3E-07 51.7 0.3 35 100-137 146-180 (337)
217 4a9a_A Ribosome-interacting GT 92.1 0.15 5.1E-06 45.5 4.9 82 89-182 106-195 (376)
218 2j37_W Signal recognition part 81.7 1.7 5.7E-05 40.3 5.2 65 100-182 182-253 (504)
219 1ni3_A YCHF GTPase, YCHF GTP-b 74.6 2.5 8.4E-05 37.8 3.9 36 102-137 85-127 (392)
220 4dzz_A Plasmid partitioning pr 70.5 9.3 0.00032 29.7 6.2 67 101-181 75-142 (206)
221 3end_A Light-independent proto 64.9 26 0.00089 29.3 8.2 69 101-181 156-225 (307)
222 3cwq_A Para family chromosome 60.7 16 0.00053 29.0 5.7 67 100-182 66-133 (209)
223 2ph1_A Nucleotide-binding prot 58.7 25 0.00084 28.7 6.8 67 100-181 127-194 (262)
224 1j8m_F SRP54, signal recogniti 58.1 22 0.00076 30.1 6.6 65 100-182 179-252 (297)
225 2v3c_C SRP54, signal recogniti 57.7 29 0.00099 31.2 7.5 65 100-182 179-251 (432)
226 3dm5_A SRP54, signal recogniti 54.6 16 0.00055 33.0 5.3 66 101-183 182-253 (443)
227 1bif_A 6-phosphofructo-2-kinas 53.8 0.74 2.5E-05 42.0 -3.8 36 102-137 87-132 (469)
228 1g3q_A MIND ATPase, cell divis 52.2 27 0.00092 27.6 5.9 65 101-181 111-175 (237)
229 3kjh_A CO dehydrogenase/acetyl 48.5 26 0.00088 27.8 5.2 66 100-181 130-195 (254)
230 3q9l_A Septum site-determining 47.2 24 0.00081 28.4 4.8 69 101-182 113-186 (260)
231 3ea0_A ATPase, para family; al 44.1 47 0.0016 26.3 6.1 67 101-181 118-184 (245)
232 3k9g_A PF-32 protein; ssgcid, 43.2 60 0.002 26.2 6.8 65 101-180 144-208 (267)
233 3ohm_A Guanine nucleotide-bind 40.9 17 0.00059 31.4 3.1 31 229-259 236-266 (327)
234 3kl4_A SRP54, signal recogniti 40.7 54 0.0019 29.4 6.5 65 101-182 179-251 (433)
235 1hyq_A MIND, cell division inh 40.6 28 0.00097 28.1 4.3 66 101-182 110-175 (263)
236 1jey_A KU70; double-strand DNA 34.1 51 0.0017 30.9 5.4 55 123-179 32-92 (609)
237 1wcv_1 SOJ, segregation protei 31.1 64 0.0022 26.0 5.0 71 100-181 110-181 (257)
238 2oze_A ORF delta'; para, walke 29.5 74 0.0025 26.1 5.2 71 101-182 154-225 (298)
239 2xxa_A Signal recognition part 29.2 1.2E+02 0.0039 27.1 6.7 37 101-137 183-225 (433)
240 1jey_B KU80; double-strand DNA 29.0 77 0.0026 29.3 5.6 51 127-179 8-63 (565)
241 2qag_B Septin-6, protein NEDD5 28.0 58 0.002 29.2 4.4 16 168-183 175-190 (427)
242 3bfv_A CAPA1, CAPB2, membrane 27.3 83 0.0028 25.9 5.1 66 101-182 191-257 (271)
243 4fid_A G protein alpha subunit 24.7 35 0.0012 29.6 2.2 32 229-260 230-261 (340)
244 1zcb_A G alpha I/13; GTP-bindi 24.2 47 0.0016 28.9 3.1 32 228-259 269-300 (362)
245 3ibs_A Conserved hypothetical 23.8 1.3E+02 0.0045 23.1 5.5 53 125-179 10-62 (218)
246 1cp2_A CP2, nitrogenase iron p 23.6 1.4E+02 0.0046 23.9 5.7 69 101-180 115-185 (269)
247 3szr_A Interferon-induced GTP- 22.0 74 0.0025 29.8 4.1 69 102-183 147-228 (608)
248 3u7r_A NADPH-dependent FMN red 21.8 80 0.0027 24.7 3.7 53 118-177 60-112 (190)
249 2ffh_A Protein (FFH); SRP54, s 21.7 1.6E+02 0.0055 26.2 6.1 37 101-137 180-222 (425)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=1.8e-58 Score=410.71 Aligned_cols=233 Identities=47% Similarity=0.772 Sum_probs=219.0
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++.+++.++.+.... ...+++++++.|..||+||+||+||.++++|+|+|+++|||++++|++.++|.||.+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Di 147 (327)
T 3ohm_A 70 KYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 147 (327)
T ss_dssp SSTHHHHHHHHHHTCCGGG--CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHH
T ss_pred CCchhHHHHHHHhcccccc--cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccch
Confidence 4678888999998775532 34799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.||+|+.+..+.++++++++||||||+++|++|.+||++++|+|||+|+|+|||++.++.+.+++.+++.+|++++
T Consensus 148 lr~r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 148 LRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp TTCCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred hcccCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCC-cch--hHHHHHHhhh------ccceeecccccccceeee
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKR-PGE--RNRMQESLKL------FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~-~~~--~~~i~~~f~~------~~~~~~~tsA~d~~~I~~ 233 (262)
+++++.++|++|||||+|++.+|+...++..|||+|.|+. +.+ .+||.++|.+ +.+|+|+|||+|++||+.
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 9999999999999999999999999999999999999964 444 8899999975 679999999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|.+
T Consensus 308 vF~~ 311 (327)
T 3ohm_A 308 VFAA 311 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9975
No 2
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=3.5e-56 Score=397.40 Aligned_cols=215 Identities=41% Similarity=0.686 Sum_probs=203.9
Q ss_pred CCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccceeeecccceeEEEEeeecc
Q psy6623 23 DTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNL 102 (262)
Q Consensus 23 ~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~~~~ 102 (262)
....+++++++.|..||+||+||+||.++++|+|+|++.|||++++|++.++|.||.+|+++++.||+|+.+..+.++++
T Consensus 82 ~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v 161 (340)
T 4fid_A 82 VTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDFVVKDI 161 (340)
T ss_dssp CCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEEESSSC
T ss_pred CCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEEEeeee
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
++++||||||+++|++|.+||++++|+|||+|+|+|||++.|+.+.+++.+++.+|+++++++++.++|++|||||+|++
T Consensus 162 ~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 162 PFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp EEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred eeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcccCCCCCCCCcch--hHHHHHHh------hh-----------------ccceeecccccccceeeeeehh
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGE--RNRMQESL------KL-----------------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f------~~-----------------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+|+...++.++||+|.|+++.+ .+|+.++| .+ +.+|+|+|||+|+.||+.+|+.
T Consensus 242 ~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~ 321 (340)
T 4fid_A 242 EEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFML 321 (340)
T ss_dssp HHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHH
T ss_pred hhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHH
Confidence 99999999999999999987665 89999999 21 4699999999999999999986
No 3
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=4.9e-54 Score=386.85 Aligned_cols=234 Identities=63% Similarity=1.014 Sum_probs=217.1
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++..+..++.+.....+ ..+++++++.|..||+||+||+||.++++|+|+|+++|||++++|++.++|.||.+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~~~Y~PT~~Di 173 (353)
T 1cip_A 95 GDAARADDARQLFVLAGAAEE-GFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDV 173 (353)
T ss_dssp SSTTHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHH
T ss_pred CCcchHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhcCCCCCCcccc
Confidence 356778888888888654332 5799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.||+|+.+..+.++++++++||||||+++|++|.+||+++++||||+|+|+||+++.|+++.+++.+++.+|++++
T Consensus 174 l~~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp HTCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred ccccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch--hHHHHHHhhh-------ccceeecccccccceeee
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE--RNRMQESLKL-------FDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~--~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~ 233 (262)
+++++.++|++||+||+|++.+|+...++..|||+|.|..+.+ .+|+..+|.+ +.+++|+|||++|+||++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 9988899999999999999999999899999999999976655 7888877643 578999999999999999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|+.
T Consensus 334 vF~~ 337 (353)
T 1cip_A 334 VFDA 337 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9964
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=5.1e-54 Score=387.92 Aligned_cols=234 Identities=42% Similarity=0.697 Sum_probs=206.8
Q ss_pred CCCCCHHHHHHHHhhhhccC-------CCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCC
Q psy6623 3 GTSLDTTDAKMVFDVIQRME-------DTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY 75 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y 75 (262)
++|.++..++.++.+..... +...| +++++.|..||+||+||+||.++++|+|+|+++|||++++||+.++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~~~Y 174 (362)
T 1zcb_A 96 GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDY 174 (362)
T ss_dssp SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTC
T ss_pred CCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhcCCC
Confidence 36777888888887754211 11356 89999999999999999999999999999999999999999999999
Q ss_pred CcCccccceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH
Q psy6623 76 QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155 (262)
Q Consensus 76 ~pt~~Dil~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~ 155 (262)
.||.+|+++++.||+|+.+..+.++++++++||||||+++|++|.+||++++++|||+|+|+|||++.|+++.+++.++.
T Consensus 175 ~PT~~Dil~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~ 254 (362)
T 1zcb_A 175 IPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 254 (362)
T ss_dssp CCCHHHHHHCCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH
T ss_pred CCChhhhhhccCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCC-Ccch--hHHHHHHhhh-------ccceeecccc
Q psy6623 156 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK-RPGE--RNRMQESLKL-------FDSICNNKWF 225 (262)
Q Consensus 156 ~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~-~~~~--~~~i~~~f~~-------~~~~~~~tsA 225 (262)
.+|..+++++++.++|++||+||+||+.+|+...++..|||+|.|. .+.+ .+|+..+|.. +.+++|+|||
T Consensus 255 ~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA 334 (362)
T 1zcb_A 255 NIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA 334 (362)
T ss_dssp HHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCT
T ss_pred HHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEec
Confidence 9999999998889999999999999999999999999999999996 5544 7888887744 4689999999
Q ss_pred cccceeeeeehh
Q psy6623 226 TDTSIILFLNKK 237 (262)
Q Consensus 226 ~d~~~I~~~f~~ 237 (262)
++|+||+++|+.
T Consensus 335 ~d~~nV~~vF~~ 346 (362)
T 1zcb_A 335 INTENIRLVFRD 346 (362)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCchhHHHHHHH
Confidence 999999999974
No 5
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=2e-53 Score=387.40 Aligned_cols=233 Identities=43% Similarity=0.726 Sum_probs=212.0
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCcccc
Q psy6623 3 GTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDI 82 (262)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Di 82 (262)
++|+++..++.++.+... ....|++++++.|..||+||+||+||.++++|+|+|+++|||++++||+.++|.||.+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Di 197 (402)
T 1azs_C 120 ANPENQFRVDYILSVMNV--PDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDL 197 (402)
T ss_dssp SSGGGHHHHHHHHHTTTC--SSCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHH
T ss_pred CCchhHHHHHHHHhhccc--CCCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccc
Confidence 377888888888887642 225799999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 83 LRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 83 l~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
++++.+|+|+.+..+.+++++++|||||||+++|++|.+||++++++|||+|+|+|||++.|+++.+++.++..||+.++
T Consensus 198 l~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp HHCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred cccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhc--cCCCcccCCCCCC------------CC-cch--hHHHHHHhhh---------c
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIK--KSPLTICFPEYAG------------KR-PGE--RNRMQESLKL---------F 216 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~--~~~l~~~fp~~~g------------~~-~~~--~~~i~~~f~~---------~ 216 (262)
+++++.++|++|||||+||+.+|+. ..++.+|||+|.| .+ +.+ ..|+.++|.+ +
T Consensus 278 ~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~ 357 (402)
T 1azs_C 278 NNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRH 357 (402)
T ss_dssp TCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSS
T ss_pred hcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCc
Confidence 9888899999999999999998885 5689999999985 21 122 6788777743 3
Q ss_pred cceeecccccccceeeeeehh
Q psy6623 217 DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 217 ~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+++|+|||+||+||+++|..
T Consensus 358 ~~~~~~TSA~d~~nV~~vF~~ 378 (402)
T 1azs_C 358 YCYPHFTCAVDTENIRRVFND 378 (402)
T ss_dssp CEEEEECCTTCHHHHHHHHHH
T ss_pred ccEEEEEEeecCcCHHHHHHH
Confidence 689999999999999999975
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=5.9e-52 Score=373.25 Aligned_cols=233 Identities=39% Similarity=0.663 Sum_probs=203.2
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCCcHHHHHHHHHhcCChHHHHHHhcccccccccchhHHHhhccccCCCCCCcCccccc
Q psy6623 4 TSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDIL 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~v~~~~~~~~~~~l~d~~~yfl~~l~ri~~~~y~pt~~Dil 83 (262)
+|.++..+..+.......+ ...+++++++.|..||+||+||+||.++++|+|+|+++|||++++|++.++|.||.+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~ 158 (354)
T 2xtz_A 80 SSESIAIGEKLSEIGGRLD-YPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVL 158 (354)
T ss_dssp CHHHHHHHHHHHHHHHHCS-SCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHH
T ss_pred ChhHHHHHHHHHhcccccc-cccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchhee
Confidence 3455556666655543333 257899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccceeEEEEee------eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 84 RTRVKTTGIVEVHFSF------KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~------~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
+++.+|+|+.+..|.+ +.+++++||||||+++|++|.+||++++++|||+|+++|||++.|+.+.+++.++..+
T Consensus 159 ~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~ 238 (354)
T 2xtz_A 159 YARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKEL 238 (354)
T ss_dssp HCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHH
T ss_pred eecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHH
Confidence 9999999999999988 4589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCccc--CCCCC----CCCcch--hHHHHHHhhh------------cc
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--FPEYA----GKRPGE--RNRMQESLKL------------FD 217 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~--fp~~~----g~~~~~--~~~i~~~f~~------------~~ 217 (262)
|+.+++++++.++|++|||||+||+.+|+...++..+ ||+|. |+++.+ .+|+.++|.+ +.
T Consensus 239 ~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~ 318 (354)
T 2xtz_A 239 FDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRV 318 (354)
T ss_dssp HHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSC
T ss_pred HHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcc
Confidence 9999998888899999999999999988877776655 99997 433333 7788887742 45
Q ss_pred ceeecccccccceeeeeehh
Q psy6623 218 SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 218 ~~~~~tsA~d~~~I~~~f~~ 237 (262)
+++|+|||+||+||+++|+.
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~ 338 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKL 338 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHH
Confidence 78899999999999999974
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.83 E-value=4.6e-21 Score=161.10 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=88.8
Q ss_pred ecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +.+ ..++++||||+||++++.++..||++++++|+|+|+++ ..++.....|+..+.
T Consensus 43 ~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~----------~~Sf~~i~~~~~~i~ 112 (216)
T 4dkx_A 43 QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVR 112 (216)
T ss_dssp -------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch----------hHHHHHHHHHHHHHH
Confidence 5677754332 333 34789999999999999999999999999999999999 788888888888776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|||||+|+..++... .+-..+......+.+++|||++|.||+++|..
T Consensus 113 ~~~-~~~~piilVgNK~Dl~~~r~V~-----------------~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 113 TER-GSDVIIMLVGNKTDLADKRQVS-----------------IEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp HHH-TTSSEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred Hhc-CCCCeEEEEeeccchHhcCccc-----------------HHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 542 3579999999999997654211 11111222224577899999999999999974
No 8
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.76 E-value=5.3e-19 Score=145.73 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=95.9
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|.....+.++++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..+....
T Consensus 53 ~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~ 122 (198)
T 1f6b_A 53 HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDE 122 (198)
T ss_dssp --CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCG
T ss_pred cCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCc
Confidence 3577777777788888999999999999999999999999999999999998 678999999999988765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh---hccceeecccccccceeeeeehhhHHHh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK---LFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~---~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
...++|++|++||+|+..+ .....+...+....-...... ..+. .+.+.+++|||++|+||+++|+ +|.+
T Consensus 123 ~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~SA~~g~gv~~l~~--~l~~ 195 (198)
T 1f6b_A 123 TIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGS----VSLKELNARPLEVFMCSVLKRQGYGEGFR--WMAQ 195 (198)
T ss_dssp GGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSC----CCTTTCCSCCEEEEECBTTTTBSHHHHHH--HHHT
T ss_pred ccCCCcEEEEEECCCcccc-CCHHHHHHHhCcccccccccc----cccccccCceEEEEEEECCCCCCHHHHHH--HHHH
Confidence 5568999999999999641 111111111100000000000 0000 1346788999999999999994 4544
Q ss_pred h
Q psy6623 243 K 243 (262)
Q Consensus 243 ~ 243 (262)
.
T Consensus 196 ~ 196 (198)
T 1f6b_A 196 Y 196 (198)
T ss_dssp T
T ss_pred h
Confidence 3
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.76 E-value=1.3e-18 Score=137.73 Aligned_cols=131 Identities=21% Similarity=0.378 Sum_probs=100.5
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 98 (164)
T 1r8s_A 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE 98 (164)
T ss_dssp CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 567787777778888999999999999999999999999999999999998 6788888899999887666
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..++|++|++||+|+..+. ....+ .+.+. .....+.+.+++|||++|.||+++|+ +|...+
T Consensus 99 ~~~~piilv~nK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~i 160 (164)
T 1r8s_A 99 LRDAVLLVFANKQDLPNAM-NAAEI--------------TDKLGLHSLRHRNWYIQATCATSGDGLYEGLD--WLSNQL 160 (164)
T ss_dssp GTTCEEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCSSCCEEEEECBTTTTBTHHHHHH--HHHHHC
T ss_pred hcCCeEEEEEECcCCcCCC-CHHHH--------------HHHhCcccccCccEEEEEcccCCCcCHHHHHH--HHHHHH
Confidence 6789999999999996521 00000 00000 00111456788999999999999995 444443
No 10
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=2.2e-18 Score=139.79 Aligned_cols=132 Identities=15% Similarity=0.249 Sum_probs=102.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+.++++.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...++..++...
T Consensus 44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~ 113 (181)
T 1fzq_A 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEE 113 (181)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCG
T ss_pred ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhCh
Confidence 4789998888888889999999999999999999999999999999999998 678888888988888765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...+.|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|+||.++|+ +|.+.+
T Consensus 114 ~~~~~piilv~NK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 176 (181)
T 1fzq_A 114 KLSCVPVLIFANKQDLLTAAP-ASEI--------------AEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN--WVCKNV 176 (181)
T ss_dssp GGTTCCEEEEEECTTSTTCCC-HHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHTC
T ss_pred hhcCCCEEEEEECcCcccCCC-HHHH--------------HHHhCchhccCCceEEEEccCCCCCCHHHHHH--HHHHHH
Confidence 557899999999999965310 0000 00000 00112456789999999999999995 455444
No 11
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=3.7e-18 Score=135.94 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=102.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..++....
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 105 (171)
T 1upt_A 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEE 105 (171)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchh
Confidence 578888888888889999999999999999999999999999999999998 6788889999999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..+.|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|.||.++|+ +|...+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~i~ 168 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAMT-SSEM--------------ANSLGLPALKDRKWQIFKTSATKGTGLDEAME--WLVETLK 168 (171)
T ss_dssp GTTCEEEEEEECTTSTTCCC-HHHH--------------HHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH--HHHHHHH
T ss_pred hCCCEEEEEEECCCCcCCCC-HHHH--------------HHHhCchhccCCceEEEECcCCCCcCHHHHHH--HHHHHHh
Confidence 57899999999999965210 0000 11111 11122456789999999999999995 4555443
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=2e-18 Score=140.50 Aligned_cols=132 Identities=20% Similarity=0.333 Sum_probs=103.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|+....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..++...
T Consensus 50 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~ 119 (189)
T 2x77_A 50 TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDED 119 (189)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCS
T ss_pred cCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhh
Confidence 3689998888888889999999999999999999999999999999999998 678899999999998776
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...++|++|++||+|+..+.- ...+ .+.+. .....+.+.+++|||++|+||+++|+ +|.+.+
T Consensus 120 ~~~~~piilv~nK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~i 182 (189)
T 2x77_A 120 ELRKSLLLIFANKQDLPDAAS-EAEI--------------AEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMD--WLVERL 182 (189)
T ss_dssp TTTTCEEEEEEECTTSTTCCC-HHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred hcCCCeEEEEEECCCCcCCCC-HHHH--------------HHHhChhhccCCceEEEEccCCCccCHHHHHH--HHHHHH
Confidence 667899999999999965210 0000 00000 01112456789999999999999995 444444
No 13
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=2.8e-18 Score=140.41 Aligned_cols=133 Identities=19% Similarity=0.224 Sum_probs=98.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.....+.++++++.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 121 (190)
T 1m2o_B 52 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAE 121 (190)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchh
Confidence 567777777888888999999999999999999999999999999999998 6788999999999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+.|++|++||+|+..+ .....+.+.+....... ...+ ...+.+.+++|||++|+||+++|+
T Consensus 122 ~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~ 184 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTG---SQRI---EGQRPVEVFMCSVVMRNGYLEAFQ 184 (190)
T ss_dssp GTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC------C---CSSCCEEEEECBTTTTBSHHHHHH
T ss_pred hcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccc---cccc---cccceEEEEEeECCcCCCHHHHHH
Confidence 568999999999999651 11111111111100000 0000 011446788999999999999995
No 14
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.5e-18 Score=138.87 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=100.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+....
T Consensus 44 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~ 113 (187)
T 1zj6_A 44 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 113 (187)
T ss_dssp EECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSG
T ss_pred CcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhch
Confidence 3688898888888889999999999999999999999999999999999998 678999999999998765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-HhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
...+.|++|++||+|+..+. ....+ .+++.. .+....+.+++|||++|+||+++|+ +|.+.+
T Consensus 114 ~~~~~piilv~NK~Dl~~~~-~~~~i--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 176 (187)
T 1zj6_A 114 DLRKAGLLIFANKQDVKECM-TVAEI--------------SQFLKLTSIKDHQWHIQACCALTGEGLCQGLE--WMMSRL 176 (187)
T ss_dssp GGTTCEEEEEEECTTSTTCC-CHHHH--------------HHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH--HHHHHH
T ss_pred hhCCCeEEEEEECCCCcCCC-CHHHH--------------HHHhChhhhcCCCcEEEEccCCCCcCHHHHHH--HHHHHH
Confidence 45689999999999996421 00000 111111 1222457789999999999999995 555555
Q ss_pred cC
Q psy6623 245 KK 246 (262)
Q Consensus 245 ~~ 246 (262)
..
T Consensus 177 ~~ 178 (187)
T 1zj6_A 177 KI 178 (187)
T ss_dssp CC
T ss_pred HH
Confidence 44
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=5e-18 Score=138.74 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=98.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..++....
T Consensus 48 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 117 (199)
T 4bas_A 48 TATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAMLKHED 117 (199)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTSHH
T ss_pred ccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHHhChh
Confidence 678888888888888999999999999999999999999999999999998 6788888889988876532
Q ss_pred C-------CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH-HHHh-hhccceeecccccccceeeeeehh
Q psy6623 167 F-------TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM-QESL-KLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~-------~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i-~~~f-~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. .++|++||+||+|+..+.. ...+ .+.+ ...+ ....+.+++|||++|+||+++|+.
T Consensus 118 ~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (199)
T 4bas_A 118 IRRELPGGGRVPFLFFANKMDAAGAKT-AAEL--------------VEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSW 182 (199)
T ss_dssp HHSBCTTSCBCCEEEEEECTTSTTCCC-HHHH--------------HHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHH
T ss_pred hhhcccccCCCCEEEEEECcCCCCCCC-HHHH--------------HHHhcchhhccCCeeEEEEeeCCCccCHHHHHHH
Confidence 2 2789999999999975310 0000 1111 1111 335678899999999999999964
No 16
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=2.6e-18 Score=140.85 Aligned_cols=128 Identities=22% Similarity=0.373 Sum_probs=97.5
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
..||+|+....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+....
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~~~~~ 126 (192)
T 2b6h_A 57 TIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKMLQED 126 (192)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCG
T ss_pred cCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHhccc
Confidence 3689998888888889999999999999999999999999999999999998 678888889999988766
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHH-----hhhccceeecccccccceeeeeehhhHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQES-----LKLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~-----f~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
...++|++|++||+|+..+. . .+-+... ...+.+.+++|||++|.||+++|+ +|
T Consensus 127 ~~~~~piilv~NK~Dl~~~~-~------------------~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~--~l 185 (192)
T 2b6h_A 127 ELRDAVLLVFANKQDMPNAM-P------------------VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLD--WL 185 (192)
T ss_dssp GGTTCEEEEEEECTTSTTCC-C------------------HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHH--HH
T ss_pred ccCCCeEEEEEECCCCCCCC-C------------------HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHH--HH
Confidence 56789999999999996521 0 0111111 111456788999999999999995 45
Q ss_pred Hhhc
Q psy6623 241 EEKI 244 (262)
Q Consensus 241 ~~~i 244 (262)
...+
T Consensus 186 ~~~i 189 (192)
T 2b6h_A 186 SHEL 189 (192)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5444
No 17
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.74 E-value=8.6e-18 Score=136.20 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=102.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+.||+|+....+.+++..+++||++|++.++..|..++++++++|+|+|+++ ..++.+...++..++...
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~ 115 (186)
T 1ksh_A 46 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEE 115 (186)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCG
T ss_pred ccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhCh
Confidence 3678888888888889999999999999999999999999999999999998 678888889999988765
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-----hhccceeecccccccceeeeeehhhHH
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-----KLFDSICNNKWFTDTSIILFLNKKDLF 240 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-----~~~~~~~~~tsA~d~~~I~~~f~~~lL 240 (262)
...+.|++|++||+|+..+.- .+-+.+.+ ..+.+.+++|||++|.||+++|+ +|
T Consensus 116 ~~~~~piilv~nK~Dl~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l 174 (186)
T 1ksh_A 116 RLAGATLLIFANKQDLPGALS-------------------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGID--WL 174 (186)
T ss_dssp GGTTCEEEEEEECTTSTTCCC-------------------HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HH
T ss_pred hcCCCcEEEEEeCccCCCCCC-------------------HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHH--HH
Confidence 566899999999999965310 01111111 12456789999999999999995 45
Q ss_pred Hhhcc
Q psy6623 241 EEKIK 245 (262)
Q Consensus 241 ~~~i~ 245 (262)
.+.+.
T Consensus 175 ~~~i~ 179 (186)
T 1ksh_A 175 LDDIS 179 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 18
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=136.65 Aligned_cols=132 Identities=23% Similarity=0.287 Sum_probs=101.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+|+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~ 121 (190)
T 2h57_A 52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTLLNHPD 121 (190)
T ss_dssp CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHSTT
T ss_pred CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChh
Confidence 578888888888889999999999999999999999999999999999998 6778888889998887655
Q ss_pred C--CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 167 F--TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 167 ~--~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
. .++|++||+||+|+..+. ....+ .+++. ..+..+.+.++++||++|+||.++|+ +|.+.
T Consensus 122 ~~~~~~piilv~nK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~ 184 (190)
T 2h57_A 122 IKHRRIPILFFANKMDLRDAV-TSVKV--------------SQLLCLENIKDKPWHICASDAIKGEGLQEGVD--WLQDQ 184 (190)
T ss_dssp TTTSCCCEEEEEECTTSTTCC-CHHHH--------------HHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH--HHHHH
T ss_pred hccCCCeEEEEEeCcCcccCC-CHHHH--------------HHHhChhhccCCceEEEEccCCCCcCHHHHHH--HHHHH
Confidence 5 689999999999996421 00000 11111 11112457789999999999999995 45554
Q ss_pred cc
Q psy6623 244 IK 245 (262)
Q Consensus 244 i~ 245 (262)
+.
T Consensus 185 i~ 186 (190)
T 2h57_A 185 IQ 186 (190)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 19
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=1.1e-17 Score=135.47 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=99.8
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+...
T Consensus 48 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~ 117 (181)
T 2h17_A 48 HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAH 117 (181)
T ss_dssp EEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTC
T ss_pred ccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhC
Confidence 34788898888888889999999999999999999999999999999999998 67889999999998876
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHH-HHhhhccceeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQ-ESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~-~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
....+.|++|++||+|+..+. ....+ .+++. .......+.+++|||++|.||+++|+
T Consensus 118 ~~~~~~piilv~NK~Dl~~~~-~~~~i--------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 118 EDLRKAGLLIFANKQDVKECM-TVAEI--------------SQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp GGGTTCEEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred hhhCCCeEEEEEECCCcccCC-CHHHH--------------HHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 445689999999999986421 00000 01110 01112456789999999999999995
No 20
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=6.3e-18 Score=137.75 Aligned_cols=132 Identities=19% Similarity=0.312 Sum_probs=100.7
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|.....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..++....
T Consensus 52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~ 121 (188)
T 1zd9_A 52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQ 121 (188)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGG
T ss_pred CCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcc
Confidence 577888777777788999999999999999999999999999999999998 6788888899999887655
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-HhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
..++|++|++||+|+..+. ....+ .+.+.. ......+.+++|||++|.||.++|+ +|...+.
T Consensus 122 ~~~~piilv~NK~Dl~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~--~l~~~~~ 184 (188)
T 1zd9_A 122 LQGIPVLVLGNKRDLPGAL-DEKEL--------------IEKMNLSAIQDREICCYSISCKEKDNIDITLQ--WLIQHSK 184 (188)
T ss_dssp GTTCCEEEEEECTTSTTCC-CHHHH--------------HHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH--HHHHTCC
T ss_pred cCCCCEEEEEECCCCccCC-CHHHH--------------HHHhChhhhccCCeeEEEEECCCCCCHHHHHH--HHHHHHH
Confidence 5689999999999996521 00000 000000 0111345678999999999999994 5555544
No 21
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=6.7e-18 Score=137.43 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=103.9
Q ss_pred HHHhhccccCCCCCCcCccccceeeecccceeEEEEee-----eccceeeeecCCccccchhhhccccCCCEEEEeeecc
Q psy6623 62 YFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSF-----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMS 136 (262)
Q Consensus 62 yfl~~l~ri~~~~y~pt~~Dil~~~~pT~Gi~~~~~~~-----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls 136 (262)
-+++.+..-....|.|+...+...+.||+|+......+ ..+.+++|||+|++.++..|..|+++++++|+|+|++
T Consensus 29 sL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 29 TNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp HHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECC
T ss_pred HHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECC
Confidence 35555555555666666555544567888877654433 3578999999999999999999999999999999999
Q ss_pred ccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc
Q psy6623 137 EYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF 216 (262)
Q Consensus 137 ~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~ 216 (262)
+.. ..+ ...++.....|+..+. ....++|++||+||+|+..+ .. .+-+.+.....
T Consensus 109 ~~~--~~~--~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~-~~------------------~~~~~~~~~~~ 163 (198)
T 3t1o_A 109 PNR--LRA--NAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDA-LP------------------VEMVRAVVDPE 163 (198)
T ss_dssp GGG--HHH--HHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTC-CC------------------HHHHHHHHCTT
T ss_pred cch--hhH--hHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccc-cC------------------HHHHHHHHHhc
Confidence 410 000 0344555555555542 23468999999999998652 00 12233333334
Q ss_pred cc-eeecccccccceeeeeehh
Q psy6623 217 DS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 217 ~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+ .++++||++|+||+++|+.
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKE 185 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHH
Confidence 56 7889999999999999964
No 22
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.4e-17 Score=134.33 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=96.4
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+...
T Consensus 45 ~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~ 114 (183)
T 1moz_A 45 TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQE 114 (183)
T ss_dssp EECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTS
T ss_pred ccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcC
Confidence 34688998888888888999999999999999999999999999999999998 67889999999998876
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHH-Hhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQE-SLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~-~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
....++|++|++||+|+..+. ....+.. ++.. ....+.+.++++||++|+||+++|+.
T Consensus 115 ~~~~~~piilv~nK~Dl~~~~-~~~~i~~--------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 115 EELQDAALLVFANKQDQPGAL-SASEVSK--------------ELNLVELKDRSWSIVASSAIKGEGITEGLDW 173 (183)
T ss_dssp STTSSCEEEEEEECTTSTTCC-CHHHHHH--------------HTTTTTCCSSCEEEEEEBGGGTBTHHHHHHH
T ss_pred hhhCCCeEEEEEECCCCCCCC-CHHHHHH--------------HhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 556789999999999986521 0000111 1000 01114467889999999999999953
No 23
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=136.59 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=87.1
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.
T Consensus 59 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~ 128 (201)
T 2hup_A 59 GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK----------RSSFLSVPHWIEDVR 128 (201)
T ss_dssp ------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB----------HHHHHTHHHHHHHHH
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 5666643 34455544 789999999999999999999999999999999998 566777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++... .+-+.+......+ .+++|||++|+||.++|+.
T Consensus 129 ~~~-~~~~piilv~NK~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 129 KYA-GSNIVQLLIGNKSDLSELREVS-----------------LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp HHS-CTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCccccccccC-----------------HHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 532 3579999999999997532100 1112222222456 7889999999999999963
No 24
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.70 E-value=6.2e-18 Score=149.60 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=85.8
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccch---hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERK---KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~---~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
..||+|+....+. ..+++++||||||+++++ .+.+||++++++|+|+|+++ . +.++..+|..++
T Consensus 31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd----------~--~~~~~~~l~~~l 97 (331)
T 3r7w_B 31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD----------E--YINAITNLAMII 97 (331)
T ss_dssp CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS----------C--TTHHHHHHHHHH
T ss_pred ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc----------h--HHHHHHHHHHHH
Confidence 3689998877653 458999999999999975 46899999999999999997 2 455555555443
Q ss_pred hC--CCCCCCeEEEEeeCCchhhh--h-----hccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeee
Q psy6623 163 NN--KWFTDTSIILFLNKKDLFEE--K-----IKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 163 ~~--~~~~~~piil~~NK~Dl~~~--k-----l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.. ....++|++|+|||+|+..+ | .......+-+.+... .+..+.+++|||+| .||.+
T Consensus 98 ~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~-------------~~~~i~f~eTSAkd-~nV~e 163 (331)
T 3r7w_B 98 EYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL-------------DGVQVSFYLTSIFD-HSIYE 163 (331)
T ss_dssp HHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC-------------SCCCEEEECCCSSS-SHHHH
T ss_pred HHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc-------------cccCceEEEeccCC-CcHHH
Confidence 21 12357999999999999642 1 111111111221100 00357899999998 58999
Q ss_pred eehh
Q psy6623 234 LNKK 237 (262)
Q Consensus 234 ~f~~ 237 (262)
+|..
T Consensus 164 AFs~ 167 (331)
T 3r7w_B 164 AFSR 167 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 25
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.68 E-value=4.1e-17 Score=131.69 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=77.4
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 107 (183)
T 2fu5_C 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIE 107 (183)
T ss_dssp HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 67777543 3455544 789999999999999999999999999999999998 567777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++. +. ...+........+.+++|||++|.||.++|..
T Consensus 108 ~~-~~~~~piilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 108 EH-ASADVEKMILGNKCDVNDKRQ----VS-------------KERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp HH-SCTTCEEEEEEEC--CCSCCC----SC-------------HHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred Hh-cCCCCCEEEEEECccCCccCc----CC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 53 234789999999999864321 00 11111112224577899999999999999964
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.68 E-value=1.3e-16 Score=126.42 Aligned_cols=115 Identities=12% Similarity=0.104 Sum_probs=87.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.... ..++|++|++||+
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~ 121 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQRQA-SPNIVIALSGNKA 121 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 35789999999999999999999999999999999998 567777777777776532 3579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+..++... ..-.........+.++++||++|.||+++|+ +|.+.+
T Consensus 122 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~i~~~~ 167 (170)
T 1r2q_A 122 DLANKRAVD-----------------FQEAQSYADDNSLLFMETSAKTSMNVNEIFM--AIAKKL 167 (170)
T ss_dssp GGGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH--HHHHTS
T ss_pred cCccccccC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH--HHHHHH
Confidence 996532100 1112222222557788999999999999995 455544
No 27
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.1e-16 Score=149.59 Aligned_cols=130 Identities=25% Similarity=0.408 Sum_probs=105.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+.++++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..++....
T Consensus 351 ~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~----------~~s~~~~~~~~~~~~~~~~ 420 (497)
T 3lvq_E 351 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDRE 420 (497)
T ss_dssp CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTSGG
T ss_pred CCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcc----------hhHHHHHHHHHHHHhhhhh
Confidence 689999999999999999999999999999999999999999999999998 7889999999999988777
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-----hhccceeecccccccceeeeeehhhHHH
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-----KLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-----~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..++|++||+||+|+..+. . ..-+...+ ..+.+.+++|||++|+||.++| .+|.
T Consensus 421 ~~~~p~ilv~NK~Dl~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~--~~l~ 479 (497)
T 3lvq_E 421 MRDAIILIFANKQDLPDAM-K------------------PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL--TWLT 479 (497)
T ss_dssp GTTCEEEEEEECCSSSSCC-C------------------HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH--HHHH
T ss_pred cCCCcEEEEEECCCCCcCC-C------------------HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH--HHHH
Confidence 7789999999999986421 0 01111111 1145678999999999999999 4566
Q ss_pred hhccCC
Q psy6623 242 EKIKKS 247 (262)
Q Consensus 242 ~~i~~~ 247 (262)
+.+.+.
T Consensus 480 ~~~~~~ 485 (497)
T 3lvq_E 480 SNYKSK 485 (497)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 666543
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.68 E-value=3.1e-17 Score=131.56 Aligned_cols=131 Identities=10% Similarity=0.097 Sum_probs=89.3
Q ss_pred ecccce--eEEEEeeec---cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGI--VEVHFSFKN---LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi--~~~~~~~~~---~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|. ....+.+.+ +.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i 105 (178)
T 2hxs_A 36 KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN----------YQSFENLEDWYTVV 105 (178)
T ss_dssp HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 567773 445555544 789999999999999999999999999999999998 45555555555544
Q ss_pred HhCC-CCCCC-eEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 162 CNNK-WFTDT-SIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 162 ~~~~-~~~~~-piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
.... ...+. |++|++||+|+..++. +. .+..........+.++++||++|.||.++|+ +
T Consensus 106 ~~~~~~~~~~~~iilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~ 166 (178)
T 2hxs_A 106 KKVSEESETQPLVALVGNKIDLEHMRT----IK-------------PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ--K 166 (178)
T ss_dssp HHHHHHHTCCCEEEEEEECGGGGGGCS----SC-------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHH--H
T ss_pred HHHhcccCCCCeEEEEEEccccccccc----cC-------------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH--H
Confidence 4310 01134 4899999999975321 00 0111111122457789999999999999995 4
Q ss_pred HHhhccC
Q psy6623 240 FEEKIKK 246 (262)
Q Consensus 240 L~~~i~~ 246 (262)
|...+.+
T Consensus 167 l~~~~~~ 173 (178)
T 2hxs_A 167 VAAEILG 173 (178)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 5555443
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=2.5e-16 Score=124.82 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=92.7
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 102 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK----------PQSFIKARHWVKELH 102 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC----------hHHHHHHHHHHHHHH
Confidence 45555432 33333 34689999999999999999999999999999999998 567777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..+.- ...+. ............+.++++||++|.||.++|+ +|.+
T Consensus 103 ~~~-~~~~piilv~nK~Dl~~~~~-~~~v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 165 (170)
T 1ek0_A 103 EQA-SKDIIIALVGNKIDXLQEGG-ERKVA-------------REEGEKLAEEKGLLFFETSAKTGENVNDVFL--GIGE 165 (170)
T ss_dssp HHS-CTTCEEEEEEECGGGGGSSC-CCCSC-------------HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH--HHHT
T ss_pred Hhc-CCCCcEEEEEECCCcccccc-ccCCC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH--HHHH
Confidence 542 35799999999999975310 01110 1122222222457789999999999999995 4544
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 166 ~i 167 (170)
T 1ek0_A 166 KI 167 (170)
T ss_dssp TS
T ss_pred HH
Confidence 43
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.67 E-value=1.2e-16 Score=129.38 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=84.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......++|++|++||+|
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN----------EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSD 138 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4689999999999999999999999999999999998 567777777777777654446799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... ...+........+.++++||++|.||+++|+.
T Consensus 139 l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 139 LEDQRAVK-----------------EEEARELAEKYGIPYFETSAANGTNISHAIEM 178 (195)
T ss_dssp CGGGCCSC-----------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred cccccccC-----------------HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 96532100 11122212224567899999999999999964
No 31
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.66 E-value=5.5e-18 Score=140.01 Aligned_cols=111 Identities=10% Similarity=0.044 Sum_probs=74.0
Q ss_pred ecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH---HHHHhCCC-CCCCeEEEEeeCC-chh
Q psy6623 108 DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF---DSICNNKW-FTDTSIILFLNKK-DLF 182 (262)
Q Consensus 108 D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~---~~i~~~~~-~~~~piil~~NK~-Dl~ 182 (262)
++|||++.|..|.+||++++|+|||||++| ..++. +.+.+ ..+++... +.++|++|++||+ |++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 678999999999999999999999999998 44543 66666 55565543 5899999999995 775
Q ss_pred hhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
. .+...++.+.+ | +... .|.|+++.|||++|+|+.+++ +||.+.+.+
T Consensus 177 ~-Ams~~EI~e~L----~---------L~~l-~R~W~Iq~csA~TGeGL~EGL--dWL~~~l~~ 223 (227)
T 3l82_B 177 K-RMPCFYLAHEL----H---------LNLL-NHPWLVQDTEAETLTGFLNGI--EWILEEVES 223 (227)
T ss_dssp C-BCCHHHHHHHT----T---------GGGG-CSCEEEEEEETTTCTTHHHHH--HHHTTTTTT
T ss_pred C-CCCHHHHHHHc----C---------CcCC-CCCEEEEEeECCCCcCHHHHH--HHHHHHHHh
Confidence 4 22222221100 0 0111 378999999999999999999 799887654
No 32
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.3e-16 Score=127.87 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=92.4
Q ss_pred ecccceeEEE--Eee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +.+ ....+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~----------~~s~~~~~~~~~~i~ 122 (192)
T 2fg5_A 53 SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK----------QDSFYTLKKWVKELK 122 (192)
T ss_dssp CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------THHHHHHHHHHHHHH
T ss_pred CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHH
Confidence 4555644322 222 45789999999999999999999999999999999998 566777666766665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...++|++|++||+|+..++. +. .+.+.+......+.++++||++|.||+++|+ +|.+
T Consensus 123 ~~-~~~~~piiiv~NK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 182 (192)
T 2fg5_A 123 EH-GPENIVMAIAGNKCDLSDIRE----VP-------------LKDAKEYAESIGAIVVETSAKNAINIEELFQ--GISR 182 (192)
T ss_dssp HH-SCTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHTTTCEEEECBTTTTBSHHHHHH--HHHH
T ss_pred Hh-CCCCCcEEEEEECcccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH--HHHH
Confidence 43 235789999999999965321 00 1122222223457789999999999999995 4555
Q ss_pred hcc
Q psy6623 243 KIK 245 (262)
Q Consensus 243 ~i~ 245 (262)
.+.
T Consensus 183 ~i~ 185 (192)
T 2fg5_A 183 QIP 185 (192)
T ss_dssp TCC
T ss_pred HHH
Confidence 544
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.66 E-value=2.4e-16 Score=126.62 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=93.1
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|... ..+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 111 (181)
T 2efe_B 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN----------QASFERAKKWVQELQ 111 (181)
T ss_dssp CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45555432 33333 35789999999999999999999999999999999998 567777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..++. +. ...+.+......+.++++||++|.||+++|. +|..
T Consensus 112 ~~~-~~~~p~i~v~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~ 171 (181)
T 2efe_B 112 AQG-NPNMVMALAGNKSDLLDARK----VT-------------AEDAQTYAQENGLFFMETSAKTATNVKEIFY--EIAR 171 (181)
T ss_dssp HHS-CTTCEEEEEEECTTCTTTCC----SC-------------HHHHHHHHHHTTCEEEECCSSSCTTHHHHHH--HHHH
T ss_pred Hhc-CCCCcEEEEEECCccccccc----CC-------------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHH--HHHH
Confidence 542 35799999999999864321 00 1112222222557789999999999999995 4555
Q ss_pred hccC
Q psy6623 243 KIKK 246 (262)
Q Consensus 243 ~i~~ 246 (262)
.+.+
T Consensus 172 ~~~~ 175 (181)
T 2efe_B 172 RLPR 175 (181)
T ss_dssp TCC-
T ss_pred HHHh
Confidence 5443
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.4e-16 Score=129.53 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=92.4
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 114 (195)
T 1x3s_A 45 AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELE 114 (195)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHT
T ss_pred CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555433 23333 35789999999999999999999999999999999998 566777777777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
......++|++|++||+|+.... +. ............+.++++||++|.||+++|+ +|..
T Consensus 115 ~~~~~~~~p~ilv~nK~Dl~~~~-----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 174 (195)
T 1x3s_A 115 TYCTRNDIVNMLVGNKIDKENRE-----VD-------------RNEGLKFARKHSMLFIEASAKTCDGVQCAFE--ELVE 174 (195)
T ss_dssp TCCSCSCCEEEEEEECTTSSSCC-----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH--HHHH
T ss_pred HhcCcCCCcEEEEEECCcCcccc-----cC-------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHH--HHHH
Confidence 65444679999999999984311 00 1112222222457789999999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 175 ~~ 176 (195)
T 1x3s_A 175 KI 176 (195)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.4e-16 Score=127.93 Aligned_cols=128 Identities=14% Similarity=0.193 Sum_probs=81.7
Q ss_pred ecccceeEEE--Eeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEVH--FSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~~--~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|..... +.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 110 (180)
T 2g6b_A 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIH 110 (180)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4566655432 2333 3689999999999999999999999999999999998 455555556665555
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..++. +. ............+.++++||++|.||+++|+ +|..
T Consensus 111 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~ 170 (180)
T 2g6b_A 111 EYA-QHDVALMLLGNKVDSAHERV----VK-------------REDGEKLAKEYGLPFMETSAKTGLNVDLAFT--AIAK 170 (180)
T ss_dssp HHS-CTTCEEEEEEECCSTTSCCC----SC-------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHH--HHHH
T ss_pred HhC-CCCCcEEEEEECcccCcccc----cC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH--HHHH
Confidence 432 25789999999999975321 00 1111111222456789999999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 171 ~~ 172 (180)
T 2g6b_A 171 EL 172 (180)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 36
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=125.23 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=90.2
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 108 (181)
T 3tw8_B 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------AESFVNVKRWLHEIN 108 (181)
T ss_dssp TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555543 34445554 789999999999999999999999999999999998 667777777777766
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ..++|++||+||+|+..++... ............+.++++||++|.||.++|+.
T Consensus 109 ~~--~~~~p~ilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 109 QN--CDDVCRILVGNKNDDPERKVVE-----------------TEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164 (181)
T ss_dssp HH--CTTSEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred Hh--CCCCCEEEEEECCCCchhcccC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 43 3579999999999987643111 11111111224467889999999999999964
No 37
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=2.6e-16 Score=126.75 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=83.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++|++||+|
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 122 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHC----CCEEEEEECTT
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3778999999999999999999999999999999998 677888888887777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++... ..-+........+.++++||++|.||.++|..
T Consensus 123 l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 123 LHMERVIS-----------------YEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp CTTTCCSC-----------------HHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred chhcceec-----------------HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 86432110 11122222224567899999999999999963
No 38
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=141.25 Aligned_cols=121 Identities=22% Similarity=0.361 Sum_probs=95.8
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.||+|+....+..+++.+++|||+|++.++.+|..++++++++|+|+|+++ ..++.....++..++....
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~~~~~~ 263 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDE 263 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHHHTCGG
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHHHhhhc
Confidence 589999988888899999999999999999999999999999999999998 7889999999999987766
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh-----hhccceeecccccccceeeeeeh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL-----KLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-----~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..++|++||+||+|+....- ..-+...+ ..+.+.+++|||++|.||+++|+
T Consensus 264 ~~~~piilV~NK~Dl~~~~~-------------------~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPNAMN-------------------AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp GTTCEEEEEEECTTSTTCCC-------------------HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred cCCCeEEEEEECccCCcccC-------------------HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHH
Confidence 67899999999999865210 01111111 11456789999999999999996
No 39
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.66 E-value=1.5e-16 Score=125.92 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=85.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
+.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 35679999999999999999999999999999999998 56666666677666654334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
|+..++... .+.+...... ..+.++++||++|.||+++|+ +|.+.
T Consensus 119 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~ 164 (167)
T 1c1y_A 119 DLEDERVVG-----------------KEQGQNLARQWCNCAFLESSAKSKINVNEIFY--DLVRQ 164 (167)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH--HHHHH
T ss_pred cccccccCC-----------------HHHHHHHHHHccCCcEEEecCCCCCCHHHHHH--HHHHH
Confidence 997532110 1111111111 246788999999999999995 44443
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.65 E-value=4.1e-16 Score=128.11 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=88.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ ..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 107 (203)
T 1zbd_A 38 VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIK 107 (203)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 456664433 2333 35789999999999999999999999999999999998 566776667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++... ...+........+.++++||++|.||.++|+.
T Consensus 108 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 108 TY-SWDNAQVLLVGNKCDMEDERVVS-----------------SERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp HH-SCSSCEEEEEEECTTCTTSCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred Hh-cCCCCCEEEEEECcccCcccccC-----------------HHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 43 23578999999999986532100 11111111123467889999999999999974
No 41
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.65 E-value=9.9e-17 Score=133.27 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=84.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......++|++||+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 5789999999999999999999999999999999998 667777777777666544346899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. ...+........+.+++|||++|.||.++|+.
T Consensus 153 l~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 192 (217)
T 2f7s_A 153 LPDQRE----VN-------------ERQARELADKYGIPYFETSAATGQNVEKAVET 192 (217)
T ss_dssp CGGGCC----SC-------------HHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred cccccc----cC-------------HHHHHHHHHHCCCcEEEEECCCCCCHHHHHHH
Confidence 965321 10 11111111224567889999999999999964
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.65 E-value=1.8e-16 Score=125.28 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=82.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......+.|++|++||+|
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 120 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 4689999999999999999999999999999999998 667777777777777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++- .. ..-+........+.++++||++|.||.++|+
T Consensus 121 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 121 LEDKRQ----VS-------------VEEAKNRADQWNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred ccccCc----cC-------------HHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 975321 10 1122222223456789999999999999995
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.65 E-value=3.5e-16 Score=127.72 Aligned_cols=112 Identities=11% Similarity=0.179 Sum_probs=80.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+.. ...++|++||+||+
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~ 137 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN----------RTSFDNISTKWEPEIKH-YIDTAKTVLVGLKV 137 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HCTTSEEEEEEECG
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEECh
Confidence 34678999999999999999999999999999999998 66777753434333332 23579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccce-eecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSI-CNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~-~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-.. . . ...+........+. +++|||++|.||.++|+.
T Consensus 138 Dl~~~~~~~--~-----------~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 138 DLRKDGSDD--V-----------T--KQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp GGCCTTTTC--C-----------C--HHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHH
T ss_pred hhccCCCCc--c-----------c--HHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHH
Confidence 997531000 0 0 11222222223455 889999999999999963
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.65 E-value=1.6e-16 Score=127.42 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=85.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..++......++|++|++||+|
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3678999999999999999999999999999999998 667777778887776544456799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. ............+.++++||++|.||.++|+.
T Consensus 126 l~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 126 LESQRQ----VP-------------RSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred cccccc----cC-------------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 975321 10 11111111224567899999999999999963
No 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=130.39 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=83.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++||+||+
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 45788999999999999999999999999999999998 67788888888888765555679999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ............+.++++||++|.||.++|+.
T Consensus 140 Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 140 DLSPEREVQ-----------------AVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred cCccccccC-----------------HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 987532110 01111111224567889999999999999964
No 46
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=2.3e-16 Score=129.57 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=78.7
Q ss_pred ecccc--eeEEEEeee----ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 87 VKTTG--IVEVHFSFK----NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 87 ~pT~G--i~~~~~~~~----~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
.||+| +....+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~ 121 (208)
T 2yc2_C 52 AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS----------MESFESCKAWFEL 121 (208)
T ss_dssp ---------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC----------HHHHHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC----------HHHHHHHHHHHHH
Confidence 46666 333445554 5689999999999999999999999999999999998 6677777777777
Q ss_pred HHhCCC--CCCCeEEEEeeCCchhh-hhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccc-cceeeeeeh
Q psy6623 161 ICNNKW--FTDTSIILFLNKKDLFE-EKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTD-TSIILFLNK 236 (262)
Q Consensus 161 i~~~~~--~~~~piil~~NK~Dl~~-~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d-~~~I~~~f~ 236 (262)
+..... ..++|++||+||+|+.. ++. +. .+.+.+......+.++++||++ |.||.++|+
T Consensus 122 i~~~~~~~~~~~piilv~nK~Dl~~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 122 LKSARPDRERPLRAVLVANKTDLPPQRHQ----VR-------------LDMAQDWATTNTLDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp HHHHCSCTTSCCEEEEEEECC-------C----CC-------------HHHHHHHHHHTTCEEEECCC-------CHHHH
T ss_pred HHHhhcccccCCcEEEEEECcccchhhcc----CC-------------HHHHHHHHHHcCCEEEEeccCCCCcCHHHHHH
Confidence 765432 25799999999999975 221 00 1112222222457889999999 999999996
Q ss_pred h
Q psy6623 237 K 237 (262)
Q Consensus 237 ~ 237 (262)
.
T Consensus 185 ~ 185 (208)
T 2yc2_C 185 S 185 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 47
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.65 E-value=1.9e-16 Score=129.11 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=87.7
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.++ .+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~l~~i~ 120 (191)
T 2a5j_A 51 DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDAR 120 (191)
T ss_dssp ---CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555643 3344443 3789999999999999999999999999999999998 566666667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+..++... ............+.++++||++|+||+++|+.
T Consensus 121 ~~~-~~~~piilv~nK~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 121 QHS-SSNMVIMLIGNKSDLESRRDVK-----------------REEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp HHS-CTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECcccCCccccC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 3579999999999996532100 11111111224567889999999999999964
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.65 E-value=1.8e-16 Score=132.15 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=82.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.++ ..|+..+... ..++|++||+||
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK 140 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY--CPSTRVLLIGCK 140 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH--CTTSEEEEEEEC
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 44789999999999999999999999999999999998 6777774 4444444432 257999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccce-eeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSI-ILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~-I~~~f~~ 237 (262)
+|+..+......+.. . ........-.........+ .+++|||++|.| |.++|+.
T Consensus 141 ~Dl~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~ 196 (214)
T 3q3j_B 141 TDLRTDLSTLMELSH----Q-KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 196 (214)
T ss_dssp GGGGGCHHHHHHHHH----T-TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred hhhccchhhhhhhcc----c-ccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHH
Confidence 999753110000000 0 0000001112222222456 788999999998 9999964
No 49
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.9e-16 Score=131.46 Aligned_cols=123 Identities=11% Similarity=0.127 Sum_probs=84.9
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~----------~~s~~~~~~~l~~i~ 112 (223)
T 3cpj_B 43 KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK----------SSSYENCNHWLSELR 112 (223)
T ss_dssp ----CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC----------HHHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHH
Confidence 4566643 33455544 789999999999999999999999999999999998 567777777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++. +. ............+.++++||++|.||+++|+.
T Consensus 113 ~~~-~~~~piilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 113 ENA-DDNVAVGLIGNKSDLAHLRA----VP-------------TEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp HHC-C--CEEEEEECCGGGGGGCC----SC-------------HHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred HhC-CCCCeEEEEEECcccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 35789999999999975321 10 11111111224577889999999999999964
No 50
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.65 E-value=3.9e-16 Score=126.91 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=87.6
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.. +.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 121 (189)
T 2gf9_A 52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN----------QESFAAVQDWATQIK 121 (189)
T ss_dssp CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 455554432 2333 35789999999999999999999999999999999998 556666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...+.|++||+||+|+..++... ...+........+.++++||++|.||+++|+.
T Consensus 122 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 122 TY-SWDNAQVILVGNKCDLEDERVVP-----------------AEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp HH-SCTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred Hh-cCCCCCEEEEEECcccccccCCC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 43 23578999999999996532110 11111111223467899999999999999963
No 51
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.5e-16 Score=129.37 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=87.4
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~ 125 (201)
T 2ew1_A 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIE 125 (201)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45666443 3344443 689999999999999999999999999999999998 556655556665554
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++- +. ..-.........+.+++|||++|.||.++|..
T Consensus 126 ~~~-~~~~piilv~NK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 126 QYA-SNKVITVLVGNKIDLAERRE----VS-------------QQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp HHS-CTTCEEEEEEECGGGGGGCS----SC-------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCCCccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 322 24789999999999965321 10 01111111224577889999999999999964
No 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.65 E-value=2e-16 Score=128.61 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=89.0
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccc-hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSER-KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r-~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+|+|.. ...+.++ .+.+.+||++|++.++ .+|..|+++++++|+|+|+++ ..++.....|+..+
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i 119 (189)
T 1z06_A 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEEC 119 (189)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHH
Confidence 4555643 3344444 3789999999999998 899999999999999999998 56666666777777
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccccc---ceeeeeeh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDT---SIILFLNK 236 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~---~~I~~~f~ 236 (262)
.......++|++|++||+|+..++- +. ............+.++++||+++ +||.++|.
T Consensus 120 ~~~~~~~~~piilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~ 180 (189)
T 1z06_A 120 KQHLLANDIPRILVGNKCDLRSAIQ----VP-------------TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFM 180 (189)
T ss_dssp HHHCCCSCCCEEEEEECTTCGGGCC----SC-------------HHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHH
T ss_pred HHhcCCCCCCEEEEEECccccccce----eC-------------HHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHH
Confidence 6544345799999999999965321 10 11111111224567889999999 99999995
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.65 E-value=2.4e-16 Score=127.36 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=88.0
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 109 (186)
T 2bme_A 40 NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDAR 109 (186)
T ss_dssp CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 3455533 23344443 789999999999999999999999999999999998 566666666666655
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++|++||+|+..++. .. ..-.........+.++++||++|+||.++|+.
T Consensus 110 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 110 MLA-SQNIVIILCGNKKDLDADRE----VT-------------FLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp HHS-CTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred Hhc-CCCCcEEEEEECcccccccc----cC-------------HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 432 25789999999999965321 10 11111222225577899999999999999964
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=126.75 Aligned_cols=123 Identities=9% Similarity=0.102 Sum_probs=90.0
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ ..+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~s~~~~~~~l~~i~ 124 (193)
T 2oil_A 55 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK----------HQTYAVVERWLKELY 124 (193)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 456665433 2333 45789999999999999999999999999999999998 566666677777776
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+..++. .. ...+........+.++++||++|.||+++|..
T Consensus 125 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 125 DHA-EATIVVMLVGNKSDLSQARE----VP-------------TEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp TTS-CTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCeEEEEEECCCcccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 532 35789999999999975321 00 11112222224577889999999999999964
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.64 E-value=3.4e-16 Score=123.98 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=71.0
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++|++||+
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 45788999999999999999999999999999999998 67888888888888876555789999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++. +. ............+.+++|||++|+||+++|+.
T Consensus 117 Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 157 (166)
T 3q72_A 117 DLVRSRE----VS-------------VDEGRACAVVFDCKFIETSAALHHNVQALFEG 157 (166)
T ss_dssp TCCSSCC----SC-------------HHHHHHHHHHTTCEEEECBGGGTBSHHHHHHH
T ss_pred ccccccc----cC-------------HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Confidence 9864321 10 11111112224567899999999999999963
No 56
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=131.35 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=84.6
Q ss_pred ecccce--eEEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGI--VEVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi--~~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|. ....+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 132 (199)
T 3l0i_B 63 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEID 132 (199)
T ss_dssp HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC----------SHHHHHHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 566664 344455544 789999999999999999999999999999999998 677777777777765
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...++|++|++||+|+..++....... ..+.. ...+.++++||++|.||.++|+ +|.+
T Consensus 133 ~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~-------------~~~~~----~~~~~~~~vSA~~g~gv~~l~~--~l~~ 192 (199)
T 3l0i_B 133 RY-ASENVNKLLVGNKCDLTTKKVVDYTTA-------------KEFAD----SLGIPFLETSAKNATNVEQSFM--TMAA 192 (199)
T ss_dssp SC-C-CCSEEEEC-CCSSCC--CCCCSCC--------------CHHHH----TTTCCBCCCCC---HHHHHHHH--HHTT
T ss_pred Hh-ccCCCCEEEEEECccCCccccCCHHHH-------------HHHHH----HcCCeEEEEECCCCCCHHHHHH--HHHH
Confidence 43 335799999999999975432221111 11111 1346688999999999999995 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 193 ~l 194 (199)
T 3l0i_B 193 EI 194 (199)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 57
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=1.1e-16 Score=130.63 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=88.7
Q ss_pred ecccceeEE--EEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.+ ..+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 53 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 122 (191)
T 3dz8_A 53 VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWATQIK 122 (191)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 566664433 3333 45789999999999999999999999999999999998 566666666666555
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...++|++|++||+|+..++... ............+.++++||++|.||.++|+.
T Consensus 123 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 123 TY-SWDNAQVILVGNKCDMEEERVVP-----------------TEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp HH-SCTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred Hh-cCCCCCEEEEEECCCCccccccC-----------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 42 23579999999999996542111 11111112224567899999999999999964
No 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.64 E-value=5e-16 Score=124.23 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=90.6
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 113 (179)
T 2y8e_A 44 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------TNSFHQTSKWIDDVR 113 (179)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 45566433 3344433 689999999999999999999999999999999997 556666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
... ..++|++|++||+|+..++. +. ............+.++++||++|.||+++|+ +|..
T Consensus 114 ~~~-~~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~--~l~~ 173 (179)
T 2y8e_A 114 TER-GSDVIIMLVGNKTDLSDKRQ----VS-------------TEEGERKAKELNVMFIETSAKAGYNVKQLFR--RVAA 173 (179)
T ss_dssp HHH-TTSSEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH--HHHH
T ss_pred Hhc-CCCCcEEEEEECCcccccCc----CC-------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH--HHHH
Confidence 432 25789999999999975321 10 1111222222457789999999999999995 4544
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 174 ~~ 175 (179)
T 2y8e_A 174 AL 175 (179)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 59
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.64 E-value=2e-16 Score=127.55 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=83.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 4567889999999999999999999999999999998 566776777777766544446789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeeccccc-ccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFT-DTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~-d~~~I~~~f~~ 237 (262)
+..++... ...+........+.+++|||+ +|.||+++|+.
T Consensus 135 l~~~~~v~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 135 LMHLRKVT-----------------RDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp CSTTCCSC-----------------HHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred chhccCcC-----------------HHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 86532110 111222222234778999999 99999999963
No 60
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.64 E-value=4.2e-16 Score=124.66 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=81.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|++|++||+
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 130 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLT-NPNTVIILIGNKA 130 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence 34789999999999999999999999999999999998 455555555655554422 2478999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++- .. .+.+.+......+.++++||++|.||.++|+
T Consensus 131 Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 131 DLEAQRD----VT-------------YEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp TCGGGCC----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred ccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9965321 00 1122222223457789999999999999995
No 61
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.63 E-value=5.7e-16 Score=127.64 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=88.8
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~ 107 (206)
T 2bcg_Y 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEID 107 (206)
T ss_dssp CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555433 334443 3689999999999999999999999999999999998 566777666766665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+..++... ............+.++++||++|.||+++|..
T Consensus 108 ~~~-~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 108 RYA-TSTVLKLLVGNKCDLKDKRVVE-----------------YDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp HHS-CTTCEEEEEEECTTCTTTCCSC-----------------HHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCCCccccccC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 432 3478999999999996532100 11111111224567889999999999999974
No 62
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.63 E-value=4.1e-16 Score=125.60 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=85.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....++..+.......++|++||+||+|
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 134 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 134 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3689999999999999999999999999999999998 667777777777777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++. +. ...+.+......+.++++||++|.||.++|+.
T Consensus 135 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 135 LEDKRQ----VS-------------VEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 174 (187)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred ccccCc----cC-------------HHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 975321 10 11222222234567899999999999999963
No 63
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.63 E-value=1.2e-15 Score=120.97 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=90.2
Q ss_pred ecccceeE--EEEee--eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSF--KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~--~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+ ....+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~ 105 (170)
T 1z0j_A 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELR 105 (170)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45555432 23333 34789999999999999999999999999999999998 566666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...+.|++|++||+|+..++- .. ............+.++++||++|.||+++|+ ++.+
T Consensus 106 ~~-~~~~~~iilv~nK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~--~i~~ 165 (170)
T 1z0j_A 106 QH-GPPSIVVAIAGNKCDLTDVRE----VM-------------ERDAKDYADSIHAIFVETSAKNAININELFI--EISR 165 (170)
T ss_dssp HH-SCTTSEEEEEEECTTCGGGCC----SC-------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHH--HHHH
T ss_pred Hh-CCCCCcEEEEEECCccccccc----cC-------------HHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH--HHHH
Confidence 43 235789999999999975321 00 1111221222456788999999999999995 4544
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 166 ~i 167 (170)
T 1z0j_A 166 RI 167 (170)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 64
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.63 E-value=3.6e-16 Score=124.17 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 105 (170)
T 1z08_A 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELR 105 (170)
T ss_dssp CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 45556433 334443 3678999999999999999999999999999999998 556666666665554
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ...++|++|++||+|+..++... ..-+........+.++++||++|.||+++|+
T Consensus 106 ~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 106 KM-LGNEICLCIVGNKIDLEKERHVS-----------------IQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp HH-HGGGSEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred Hh-cCCCCeEEEEEECcccccccccC-----------------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 32 12468999999999997632110 1111111222456788999999999999995
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.63 E-value=4e-16 Score=123.52 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=86.9
Q ss_pred ecccceeE--EEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 104 (168)
T 1z2a_A 35 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVV 104 (168)
T ss_dssp SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 34555332 333333 4689999999999999999999999999999999998 556666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... .+.|++|++||+|+..++. .. ...+........+.++++||++|.||+++|+
T Consensus 105 ~~~--~~~piilv~nK~Dl~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 105 AEV--GDIPTALVQNKIDLLDDSC----IK-------------NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp HHH--CSCCEEEEEECGGGGGGCS----SC-------------HHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred HhC--CCCCEEEEEECcccCcccc----cC-------------HHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 432 5789999999999975321 00 1111222222456788999999999999995
No 66
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=129.30 Aligned_cols=123 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 124 (200)
T 2o52_A 55 NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNSLAAWLTDAR 124 (200)
T ss_dssp -----CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4565643 33444444 789999999999999999999999999999999998 566666667776665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+..++... ..-.........+.+++|||++|.||.++|..
T Consensus 125 ~~~-~~~~piilv~nK~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 125 TLA-SPNIVVILCGNKKDLDPEREVT-----------------FLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp HHT-CTTCEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCcEEEEEECCCcccccccC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 2579999999999996532110 01111112225577899999999999999964
No 67
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=125.92 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=88.6
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 115 (196)
T 3tkl_A 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEID 115 (196)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555543 34444544 789999999999999999999999999999999998 566666666666665
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+..++... ............+.++++||++|.||.++|..
T Consensus 116 ~~~-~~~~p~ilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 116 RYA-SENVNKLLVGNKCDLTTKKVVD-----------------YTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp HHS-CTTCEEEEEEECTTCTTTCCSC-----------------HHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECcccccccccC-----------------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 432 3578999999999986532110 11111112224567899999999999999964
No 68
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.62 E-value=4.7e-16 Score=122.69 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=83.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 4569999999999999999999999999999999998 667777777887777654446799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+..++- +. ............+.++++||++|.||.++|+
T Consensus 120 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 120 LESERE----VS-------------SSEGRALAEEWGCPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp GGGGCC----SC-------------HHHHHHHHHHHTSCEEEECTTCHHHHHHHHH
T ss_pred cccccc----CC-------------HHHHHHHHHHhCCCEEEecCCCCcCHHHHHH
Confidence 865321 10 0111111112356788999999999999995
No 69
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=126.50 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=85.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSD 130 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccC
Confidence 3689999999999999999999999999999999998 677777777777777654445799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++- +. ...+........+.++++||++|.||+++|..
T Consensus 131 l~~~~~----~~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 131 LEDKRQ----VS-------------VEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp CGGGCC----SC-------------HHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred cccccc----cc-------------HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 975321 10 11122222224567889999999999999964
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=124.96 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=85.6
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~~~~i~ 125 (192)
T 2il1_A 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMID 125 (192)
T ss_dssp -CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 5666643 3344443 3789999999999999999999999999999999998 455555555544443
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ....++|++|++||+|+..++. +. .+.+...... ..+.+++|||++|.||+++|+.
T Consensus 126 ~-~~~~~~piilV~NK~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 126 K-YASEDAELLLVGNKLDCETDRE----IT-------------RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp H-HSCTTCEEEEEEECGGGGGGCC----SC-------------HHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred H-hcCCCCcEEEEEECcccccccc----cC-------------HHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 3 2235799999999999965321 10 0111111111 2467889999999999999963
No 71
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.61 E-value=7.8e-16 Score=122.24 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=79.3
Q ss_pred ccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++. .|..++++++++|+|+|+++ ..++.....++..+.......++|++|++||+
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC----------hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 47789999999999876 88889999999999999998 67778888888888765555689999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... ............+.++++||++|.||.++|..
T Consensus 120 Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 120 DLARSREVS-----------------LEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp TCGGGCCSC-----------------HHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred chhhcccCC-----------------HHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 997532110 11122222224567899999999999999963
No 72
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.61 E-value=7.7e-16 Score=125.23 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=82.0
Q ss_pred EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 95 VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 95 ~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
..+.+++ +.+++||++|++.++ |+++++++|+|+|+++ ..++.+...|+..+.......++|+
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi 122 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASEVPM 122 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGGSCE
T ss_pred EEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3344443 678899999999887 8899999999999998 6788888888888876544467999
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc-cceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF-DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~-~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+..+. ...+. ...+....... .+.+++|||++|.||+++|+.
T Consensus 123 ilv~nK~Dl~~~~--~~~v~-------------~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 123 VLVGTQDAISAAN--PRVID-------------DSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp EEEEECTTCBTTB--CCCSC-------------HHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred EEEEECccccccc--ccccC-------------HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 9999999985311 00000 11122222222 367889999999999999963
No 73
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=5.6e-16 Score=127.24 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=84.6
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 58 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~ 127 (199)
T 2p5s_A 58 SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC----------EKSFLNIREWVDMIE 127 (199)
T ss_dssp -------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 4555533 2334443 4779999999999999999999999999999999998 455555555555544
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.. ...++|++||+||+|+......... .. .. ............+.+++|||++|.||.++|. +|..
T Consensus 128 ~~-~~~~~piilv~NK~Dl~~~~~~~~~-~~-------v~---~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~--~l~~ 193 (199)
T 2p5s_A 128 DA-AHETVPIMLVGNKADIRDTAATEGQ-KC-------VP---GHFGEKLAMTYGALFCETSAKDGSNIVEAVL--HLAR 193 (199)
T ss_dssp HH-C---CCEEEEEECGGGHHHHHHTTC-CC-------CC---HHHHHHHHHHHTCEEEECCTTTCTTHHHHHH--HHHH
T ss_pred Hh-cCCCCCEEEEEECcccccccccccc-cc-------cC---HHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH--HHHH
Confidence 32 2247899999999999753211100 00 00 1112222222456788999999999999995 4444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 194 ~i 195 (199)
T 2p5s_A 194 EV 195 (199)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 74
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.61 E-value=1.9e-16 Score=126.76 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=85.0
Q ss_pred ecccceeE--EEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVE--VHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~--~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|... ..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 106 (177)
T 1wms_A 37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFI 106 (177)
T ss_dssp --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 56667543 3344443 689999999999999999999999999999999998 445544444444443
Q ss_pred ---hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 163 ---NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ---~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
......++|++|++||+|+...... .+-+.+... ...+.++++||++|.||.++|+.
T Consensus 107 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 107 YYADVKEPESFPFVILGNKIDISERQVS------------------TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp HHHTCSCTTTSCEEEEEECTTCSSCSSC------------------HHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHH
T ss_pred HHccccccCCCcEEEEEECCcccccccC------------------HHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHH
Confidence 3333367899999999998621100 111122112 24567889999999999999963
No 75
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=126.62 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=82.3
Q ss_pred ccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++. +|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 140 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence 46789999999998875 88899999999999999998 66777777777777654333579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... .+-.........+.+++|||++|.||+++|..
T Consensus 141 Dl~~~~~v~-----------------~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 141 DLARSREVS-----------------LEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp TCTTTCCSC-----------------HHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred hccccCCcC-----------------HHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence 996532110 01111111123466889999999999999964
No 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=121.17 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=76.0
Q ss_pred ccceeeeecCCccc--cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 101 NLNFKLFDVGGQRS--ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~--~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
.+.+.+||++|++. ++.++..++++++++|+|+|+++ ..++.....|+..+.......++|++|++||
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIAD----------RGSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 36789999999998 67778889999999999999998 6777777777777776544457999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++- +. ..-.........+.+++|||++|.||+++|..
T Consensus 121 ~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 121 ADLARCRE----VS-------------VEEGRACAVVFDCKFIETSATLQHNVAELFEG 162 (175)
T ss_dssp TTCTTTCC----SC-------------HHHHHHHHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred hhhccccc----cC-------------HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99965321 10 01111111123467889999999999999963
No 77
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.61 E-value=9.3e-16 Score=122.99 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=74.7
Q ss_pred ecccce--eEEEEeee---ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 87 VKTTGI--VEVHFSFK---NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 87 ~pT~Gi--~~~~~~~~---~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.||+|. ....+.++ ...+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~ 107 (182)
T 1ky3_A 38 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEF 107 (182)
T ss_dssp ---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC----------hHHHHHHHHHHHHH
Confidence 355553 33334443 3678999999999999999999999999999999998 45555555555555
Q ss_pred HhC---CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 162 CNN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~---~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ....+.|++|++||+|+....-. .. ...+..... ...+.+++|||++|.||+++|+.
T Consensus 108 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---v~-------------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 108 LVHANVNSPETFPFVILGNKIDAEESKKI---VS-------------EKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp HHHHCCSCTTTCCEEEEEECTTSCGGGCC---SC-------------HHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHH
T ss_pred HHHhcccCcCCCcEEEEEECCcccccccc---CC-------------HHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHH
Confidence 432 23367899999999998542100 00 111111111 14567889999999999999963
No 78
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=7.9e-16 Score=125.30 Aligned_cols=110 Identities=9% Similarity=0.084 Sum_probs=78.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC--CCCCCeEEEEee
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK--WFTDTSIILFLN 177 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~--~~~~~piil~~N 177 (262)
..+.+++||++|++.++.+ ..|+++++++|+|+|+++ ..++.+...|+..+.... ...++|++|++|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 4578999999999999874 779999999999999998 677777777777766431 125789999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccc-cccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWF-TDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA-~d~~~I~~~f~~ 237 (262)
|+|+..++... .+.+.+......+.+++||| ++|+||+++|+.
T Consensus 136 K~Dl~~~~~v~-----------------~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 136 KLDMAQYRQVT-----------------KAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179 (187)
T ss_dssp CGGGGGGCSSC-----------------HHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHH
T ss_pred CcchhhcCccC-----------------HHHHHHHHHHcCCcEEEEeecCccccHHHHHHH
Confidence 99996532100 11111112224567889999 899999999963
No 79
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1e-15 Score=125.24 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=82.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
..+.+.+||++|++. +..|..++++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence 347799999999998 8899999999999999999998 56677766666666654334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccc-eeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS-IILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~-~I~~~f~~ 237 (262)
|+..++. +. ............+.++++||++|. ||.++|+.
T Consensus 143 Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 143 DLDHSRQ----VS-------------TEEGEKLATELACAFYECSACTGEGNITEIFYE 184 (196)
T ss_dssp GGGGGCC----SC-------------HHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred ccccccc----cC-------------HHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence 9976321 10 111111111235778899999999 99999963
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.6e-15 Score=120.33 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=83.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ....+.|++|++||
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 34679999999999999999999999999999999998 45555555555555432 12357899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
+|+..++- +. ............+.++++||++|.||+++|+ +|.+.+.+
T Consensus 119 ~Dl~~~~~----v~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~~~~ 167 (172)
T 2erx_A 119 CDESPSRE----VQ-------------SSEAEALARTWKCAFMETSAKLNHNVKELFQ--ELLNLEKR 167 (172)
T ss_dssp GGGGGGCC----SC-------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHH--HHHHTCCS
T ss_pred cccccccc----cC-------------HHHHHHHHHHhCCeEEEecCCCCcCHHHHHH--HHHHHHhh
Confidence 99975321 10 0111111122346788999999999999995 55555543
No 81
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1e-15 Score=124.83 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=80.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+|
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 133 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY--APNVPFLLIGTQID 133 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECTT
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 788999999999999999999999999999999998 56676665 455555432 24799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+..+.-....+.... ...-. ............+ .+++|||++|.||+++|+.
T Consensus 134 l~~~~~~~~~~~~~~---~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 186 (194)
T 2atx_A 134 LRDDPKTLARLNDMK---EKPIC--VEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186 (194)
T ss_dssp STTCHHHHHHHTTTT---CCCCC--HHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHH
T ss_pred hcccccchhhccccc---CcccC--HHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHH
Confidence 975321100000000 00000 1111111111233 6889999999999999963
No 82
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=124.52 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=80.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 134 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS----------PSSFQNVSEKWVPEIRCH--CPKAPIILVGTQS 134 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSSCEEEEEECG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECH
Confidence 3678899999999999999999999999999999998 56777765 455555432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-....+...- ...-. ............. .+++|||++|.||.++|+.
T Consensus 135 Dl~~~~~~~~~~~~~~---~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 188 (201)
T 2q3h_A 135 DLREDVKVLIELDKCK---EKPVP--EEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188 (201)
T ss_dssp GGGGCHHHHHHHHTTT---CCCCC--HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred hhhhchhhhhhhcccc---cccCC--HHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHH
Confidence 9975321100000000 00000 1111111111233 6889999999999999964
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.59 E-value=3.4e-15 Score=124.05 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=87.4
Q ss_pred eecccceeEEEEeeec-----cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKN-----LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~-----~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
+.+|+|.......+.. +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..
T Consensus 40 ~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~ 109 (218)
T 4djt_A 40 YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS----------RITCQNLARWVKE 109 (218)
T ss_dssp EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHH
T ss_pred CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHH
Confidence 4677776655554421 679999999999999999999999999999999998 4455554445444
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+... ...+.|++||+||+|+..++... ...+........+.++++||++|.||+++|..
T Consensus 110 ~~~~-~~~~~piilv~nK~Dl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 110 FQAV-VGNEAPIVVCANKIDIKNRQKIS-----------------KKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp HHHH-HCSSSCEEEEEECTTCC----CC-----------------HHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred HHHh-cCCCCCEEEEEECCCCccccccC-----------------HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 4432 12358999999999986532110 11222222335577899999999999999964
No 84
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.59 E-value=1.3e-15 Score=127.10 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=89.8
Q ss_pred eecccceeEEEEee----eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSF----KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~----~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+.+|+|.......+ +++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+
T Consensus 44 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~ 113 (221)
T 3gj0_A 44 YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDL 113 (221)
T ss_dssp EETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHH
T ss_pred CCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence 35666755444333 45789999999999999999999999999999999998 56666666666666
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
... ..++|++||+||+|+..++... .. ..+... ..+.+++|||++|.||.++|.
T Consensus 114 ~~~--~~~~p~ilv~nK~Dl~~~~~~~-~~--------------~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 114 VRV--CENIPIVLCGNKVDIKDRKVKA-KS--------------IVFHRK----KNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp HHH--STTCCEEEEEECTTSSSCSSCG-GG--------------CCHHHH----HTCEEEECBGGGTBTTTHHHH
T ss_pred HHh--CCCCCEEEEEECCccccccccH-HH--------------HHHHHH----cCCEEEEEeCCCCCCHHHHHH
Confidence 643 2478999999999996533211 00 122222 346788999999999999995
No 85
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.59 E-value=1.6e-15 Score=125.48 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=79.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++.+|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 123 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------KASYENVLKKWMPELRRF--APNVPIVLVGTKL 123 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCH
Confidence 3689999999999999999999999999999999998 56677665 455554432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++...... .+.-. ............ ..+++|||++|+||.++|+.
T Consensus 124 Dl~~~~~~~~~~-------~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 173 (212)
T 2j0v_A 124 DLRDDKGYLADH-------TNVIT--STQGEELRKQIGAAAYIECSSKTQQNVKAVFDT 173 (212)
T ss_dssp HHHTCHHHHHTC-------SSCCC--HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHH
T ss_pred HhhhCccccccc-------cCCCC--HHHHHHHHHHcCCceEEEccCCCCCCHHHHHHH
Confidence 997643210000 00000 111111111223 36889999999999999974
No 86
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.59 E-value=1.5e-15 Score=120.43 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=83.3
Q ss_pred eccccee--EEEEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 102 (170)
T 1g16_A 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVN 102 (170)
T ss_dssp -----CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555533 3344444 3689999999999999999999999999999999998 455666566666655
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..+.|++|++||+|+...... .+-.........+.++++||++|.||.++|..
T Consensus 103 ~~~-~~~~piilv~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 103 EHA-NDEAQLLLVGNKSDMETRVVT------------------ADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp HHS-CTTCEEEEEEECTTCTTCCSC------------------HHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred Hhc-CCCCcEEEEEECccCCcCccC------------------HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 432 247899999999998321100 01111111223467899999999999999963
No 87
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.58 E-value=4e-16 Score=134.79 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=78.2
Q ss_pred ecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHH---HHHhCCC-CCCCeEEEEeeC-Cchh
Q psy6623 108 DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD---SICNNKW-FTDTSIILFLNK-KDLF 182 (262)
Q Consensus 108 D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~---~i~~~~~-~~~~piil~~NK-~Dl~ 182 (262)
|+|||++.|..|.+||++++|+|||||.+| ..|+. +.+.+. .+++... +.++|++|++|| +|++
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 479999999999999999999999999999 56654 555444 5555433 578999999997 5885
Q ss_pred hhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 183 EEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 183 ~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
. .+...++.+.+ | .... .|.|+++.|||++|+|+.+++ +||.+.+.+
T Consensus 262 ~-Ams~~EI~e~L----~---------L~~l-~r~W~Iq~csA~tGeGL~EGl--dWL~~~l~~ 308 (312)
T 3l2o_B 262 K-RMPCFYLAHEL----H---------LNLL-NHPWLVQDTEAETLTGFLNGI--EWILEEVES 308 (312)
T ss_dssp C-BCCHHHHHHHT----T---------GGGG-CSCEEEEEEETTTCTTHHHHH--HHHHHHSCC
T ss_pred C-CCCHHHHHHHc----C---------CccC-CCcEEEEecccCCCcCHHHHH--HHHHHHHHh
Confidence 4 22221221100 0 0111 278999999999999999999 799887754
No 88
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.58 E-value=1.6e-15 Score=124.85 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=79.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+.. ...++|++|++||+|
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 140 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKKD 140 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGG
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEecHH
Confidence 4689999999999999999999999999999999998 56666663333333322 124799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
+..+......+...... ... ............. .++++||++|.||.++|+
T Consensus 141 l~~~~~~~~~~~~~~~~--~v~---~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 141 LRQDEHTRRELAKMKQE--PVR---SEEGRDMANRISAFGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp GTTCHHHHHHHHTTTCC--CCC---HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred hhcCccchhhhcccccC--cCC---HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHH
Confidence 97532111111000000 000 1111111112233 678999999999999995
No 89
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=4e-15 Score=124.24 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=81.5
Q ss_pred ccceeeeecCCccc-cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRS-ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~-~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+|||+|++. ++.++..|+++++++|+|+|+++ ..++.....|+..+.......++|++||+||+
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 35678999999988 67788889999999999999998 67888877777777653334579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||..++... ... | ..+. ....+.+++|||++|+||+++|..
T Consensus 156 DL~~~r~v~--~~e------~-----~~~a----~~~~~~~~e~SAk~g~~v~elf~~ 196 (211)
T 2g3y_A 156 DLVRCREVS--VSE------G-----RACA----VVFDCKFIETSAAVQHNVKELFEG 196 (211)
T ss_dssp TCGGGCCSC--HHH------H-----HHHH----HHHTCEEEECBTTTTBSHHHHHHH
T ss_pred HHhcCceEe--HHH------H-----HHHH----HHcCCEEEEEeCCCCCCHHHHHHH
Confidence 997532110 000 0 1111 113467889999999999999964
No 90
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=3.5e-15 Score=123.11 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=86.4
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~ 119 (213)
T 3cph_A 50 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD----------ERTFTNIKQWFKTVN 119 (213)
T ss_dssp SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 4555533 34455554 789999999999999999999999999999999998 455655556666655
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
... ..++|++||+||+|+.... .. ............+.++++||++|.||.++|..
T Consensus 120 ~~~-~~~~piilv~nK~Dl~~~~-----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 120 EHA-NDEAQLLLVGNKSDMETRV-----VT-------------ADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp HHT-TTCSEEEEEEECTTCSSCC-----SC-------------HHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred Hhc-CCCCCEEEEEECCCCcccc-----cC-------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 432 2478999999999983211 00 01111111123467889999999999999974
No 91
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.58 E-value=2.6e-15 Score=124.36 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=65.7
Q ss_pred ccceeEEEEeee---ccceeeeecCCccccch-hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 89 TTGIVEVHFSFK---NLNFKLFDVGGQRSERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 89 T~Gi~~~~~~~~---~~~~~i~D~~Gq~~~r~-~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
|++.....+.++ ++.+++|||+|++.++. .|..|+++++++|+|+|++++ ...+.+...++..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~ 108 (214)
T 2fh5_B 38 SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLID 108 (214)
T ss_dssp CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHH
T ss_pred CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhh
Confidence 334444445555 57899999999999998 899999999999999999872 13466666777666543
Q ss_pred C--CCCCCeEEEEeeCCchhhh
Q psy6623 165 K--WFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 165 ~--~~~~~piil~~NK~Dl~~~ 184 (262)
. ...++|++|++||+|+..+
T Consensus 109 ~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 109 SMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhcccCCCEEEEEECCCCCCc
Confidence 1 2246899999999999653
No 92
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.58 E-value=2.3e-15 Score=121.56 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=81.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 3568899999999999999999999999999999998 677777777777777654456899999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+...... ...+........+.++++||++|.||.++|..
T Consensus 121 l~~~~~~------------------~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 121 LPSRTVD------------------TKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp SSSCSSC------------------HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred CcccccC------------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 8631100 11111111224467889999999999999964
No 93
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.58 E-value=2.9e-15 Score=123.11 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=85.1
Q ss_pred ecccceeEE--EEeee--ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIVEV--HFSFK--NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~~~--~~~~~--~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+|+|.... .+.++ .+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 107 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFL 107 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 455564433 33333 3689999999999999999999999999999999998 455555545555444
Q ss_pred hC---CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehh
Q psy6623 163 NN---KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~---~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ....+.|++|++||+|+...... ...+..... ...+.++++||++|.||.++|+.
T Consensus 108 ~~~~~~~~~~~piilv~nK~Dl~~~~~~------------------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (207)
T 1vg8_A 108 IQASPRDPENFPFVVLGNKIDLENRQVA------------------TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168 (207)
T ss_dssp HHHCCSSGGGSCEEEEEECTTSSCCCSC------------------HHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred HhcccccCCCCcEEEEEECCCCcccccC------------------HHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHH
Confidence 32 22347899999999998631100 111111111 24567889999999999999964
No 94
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.58 E-value=3.4e-15 Score=121.54 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=80.4
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... +.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~~---~~piilv~NK~D- 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN----------SNTLDRAKTWVNQLKISS---NYIIILVANKID- 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-
Confidence 789999999999999999999999999999999998 566777777777776532 399999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..++ .. . .+-+.+......+.++++||++|.||.++|+.
T Consensus 159 ~~~~----~~----------~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 197 (208)
T 3clv_A 159 KNKF----QV----------D---ILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM 197 (208)
T ss_dssp CC-C----CS----------C---HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred cccc----cC----------C---HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 3211 00 0 12222222335678899999999999999963
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.57 E-value=5.4e-15 Score=119.02 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=82.4
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++|++||
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 118 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 118 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTSCEEEEEEC
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHHh--CCCCCEEEEeEc
Confidence 34678899999999999999999999999999999998 56676665 455544432 237999999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehhhHHHhhc
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
+|+..+......+... ................... .++++||++|.||.++|+ ++...+
T Consensus 119 ~Dl~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~--~l~~~~ 178 (186)
T 1mh1_A 119 LDLRDDKDTIEKLKEK-----KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD--EAIRAV 178 (186)
T ss_dssp HHHHTCHHHHHHHHHT-----TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred ccccccchhhhhhccc-----ccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHH--HHHHHH
Confidence 9997532110000000 0000001111111111333 688999999999999995 344443
No 96
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.57 E-value=4.3e-15 Score=120.28 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=78.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 121 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence 4779999999999999999999999999999999998 56666663 444444332 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhc-cceeeccccc-ccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLF-DSICNNKWFT-DTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~-~~~~~~tsA~-d~~~I~~~f~~ 237 (262)
|+..+.....++.. +....-. .+-........ .+.+++|||+ +|.||+++|+.
T Consensus 122 Dl~~~~~~~~~~~~---~~~~~v~--~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 122 DLRTDVSTLVELSN---HRQTPVS--YDQGANMAKQIGAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp GGGGCHHHHHHHHT---TTCCCCC--HHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred hhhcchhhHhhhhh---cccCCCC--HHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHH
Confidence 99753110000000 0000000 11111111112 2568899998 68999999964
No 97
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=3.5e-15 Score=123.28 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=78.9
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 139 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS----------PDSLENIPEKWVPEVKHF--CPNVPIILVANKK 139 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence 3689999999999999999999999999999999998 56666663 344443321 2478999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+......+...... ... ............. .++++||++|.||+++|+.
T Consensus 140 Dl~~~~~~~~~~~~~~~~--~v~---~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~ 193 (207)
T 2fv8_A 140 DLRSDEHVRTELARMKQE--PVR---TDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193 (207)
T ss_dssp GGGGCHHHHHHHHHTTCC--CCC---HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred hhhccccchhhhhhcccC--CCC---HHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHH
Confidence 997532111111110000 000 1111111111223 6789999999999999963
No 98
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.56 E-value=2.2e-15 Score=121.07 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++|++||+
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~ 122 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIVLVGTKL 122 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEech
Confidence 4678899999999999999999999999999999998 56666665 344444432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++..... .+. ...-. ..-......... ..+++|||++|+||+++|+
T Consensus 123 Dl~~~~~~~~~----~~~-~~~v~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 123 DLRDDKQFFID----HPG-AVPIT--TVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp HHHTCHHHHHH----C---CCCCC--HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred hhhcCcccccc----ccc-CCCCC--HHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence 99764321000 000 00000 111111111123 3678999999999999996
No 99
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.55 E-value=9.3e-15 Score=121.03 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=79.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHH-HHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES-LKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~-~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++.+|..++++++++|+|+|+++ ..++.+. ..|+..+... ..++|++|++||+
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 142 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence 4789999999999999999999999999999999998 5666666 3444444432 2479999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeeccccc-ccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFT-DTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~-d~~~I~~~f~~ 237 (262)
|+..+......+.. +....-. .+-......... +.+++|||+ +|.||+++|..
T Consensus 143 Dl~~~~~~~~~~~~---~~~~~v~--~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 143 DLRTDVSTLVELSN---HRQTPVS--YDQGANMAKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp GGGGCHHHHHHHHT---TTCCCCC--HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred hhccchhhhhhhcc---cccCCCC--HHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 99752110000000 0000000 111111111122 568899998 68999999964
No 100
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.54 E-value=5.6e-15 Score=122.87 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=66.1
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK 147 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS----------PNSFDNIFNRWYPEVNHF--CKKVPIIVVGCK 147 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSCCEEEEEEC
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEC
Confidence 34679999999999999999999999999999999998 56676665 455444432 257899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++-....+... ....-. ..-.........+ .+++|||++|.||+++|+.
T Consensus 148 ~Dl~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~ 202 (214)
T 2j1l_A 148 TDLRKDKSLVNKLRRN---GLEPVT--YHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202 (214)
T ss_dssp GGGGSCHHHHHHHHHT---TCCCCC--HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred hhhhccchhhhhhccc---ccCccc--HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 9997532110000000 000000 1111111112333 6889999999999999963
No 101
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.53 E-value=6.8e-15 Score=121.46 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=79.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+.... .+.|++|++||+
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~ 144 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHHC--PNTPIILVGTKL 144 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHHC--SSCCEEEEEECH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC--CCCCEEEEEech
Confidence 4667799999999999999999999999999999998 66777765 4444444322 579999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc-ceeecccccccceeeeeeh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD-SICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~-~~~~~tsA~d~~~I~~~f~ 236 (262)
|+..++.....+... .................. ..++++||++|+||.++|+
T Consensus 145 Dl~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 145 DLRDDKDTIEKLKEK-----KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp HHHTCHHHHHHHHHT-----TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHH
T ss_pred hhccchhhhhhhhcc-----ccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHH
Confidence 997543211000000 000000111111111223 3488999999999999995
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.53 E-value=1e-14 Score=116.71 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=80.3
Q ss_pred eEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ....++...+..+.. .++|+
T Consensus 46 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~ 110 (178)
T 2lkc_A 46 GAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPI 110 (178)
T ss_dssp CCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCE
T ss_pred eEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCE
Confidence 334556677889999999999999999999999999999999886 334555566555432 36899
Q ss_pred EEEeeCCchhhh---hhccC-CCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEE---KIKKS-PLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~---kl~~~-~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+... ++... .....+++-.| ..+.+++|||++|.||+++|+.
T Consensus 111 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 111 IVAINKMDKPEANPDRVMQELMEYNLVPEEWG---------------GDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp EEEEETTTSSCSCHHHHHHHHTTTTCCBTTTT---------------SSEEEEECCSSSSHHHHHHHHH
T ss_pred EEEEECccCCcCCHHHHHHHHHhcCcChhHcC---------------CcccEEEEecCCCCCHHHHHHH
Confidence 999999998642 11000 00000000000 1256889999999999999964
No 103
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.53 E-value=1.2e-14 Score=114.16 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=81.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......+.|++|++||+|
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence 4678999999999999999999999999999999998 566677766766665543335799999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
+.... .. ...+........+.++++||++|.||.++|+
T Consensus 120 l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 120 LAART-----VE-------------SRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp CSCCC-----SC-------------HHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred hhhcc-----cC-------------HHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 86411 00 1111111122456788999999999999995
No 104
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=7.2e-15 Score=119.84 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=81.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC-CCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK-WFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~-~~~~~piil~~NK 178 (262)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ...++|++|++||
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK 123 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS----------KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 34679999999999999999999999999999999998 455555444544443321 1346899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+|+..... . ............+.++++||++|.||.++|+ +|...+.
T Consensus 124 ~Dl~~~~~-----~-------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~--~l~~~~~ 170 (199)
T 2gf0_A 124 CDETQREV-----D-------------TREAQAVAQEWKCAFMETSAKMNYNVKELFQ--ELLTLET 170 (199)
T ss_dssp TTCSSCSS-----C-------------HHHHHHHHHHHTCEEEECBTTTTBSHHHHHH--HHHHHCS
T ss_pred ccCCcccc-----C-------------HHHHHHHHHHhCCeEEEEecCCCCCHHHHHH--HHHHHHh
Confidence 99864110 0 1111111122346788999999999999995 4444443
No 105
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.52 E-value=2e-14 Score=116.55 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------SKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEEECCC-----------CTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence 3679999999999999999999999999999999998 566666666666655433335789999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..... . ..-+.+......+.++++||++|.||.++|+.
T Consensus 138 l~~~~~---------------~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 138 LPTRTV---------------D---TKQAHELAKSYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp CSCCCS---------------C---HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred CCcccC---------------C---HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 864110 0 11111112224567889999999999999963
No 106
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.52 E-value=1.3e-14 Score=116.41 Aligned_cols=106 Identities=10% Similarity=0.016 Sum_probs=72.6
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH---HHHHHhCCCCCCCeEEEEee
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL---FDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~---~~~i~~~~~~~~~piil~~N 177 (262)
.+.+++||++|++. ..|+++++++|+|+|+++ ..++.....| +..+.. ....++|++|++|
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~n 116 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRG-EGRGGLALALVGT 116 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHC-SSSCCCEEEEEEE
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEE
Confidence 46789999999986 468899999999999998 5566665554 444432 2235799999999
Q ss_pred CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 178 KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 178 K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+|+..+. .... . .+-+...... ..+.+++|||++|.||+++|+.
T Consensus 117 K~Dl~~~~--~~~v-----------~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 117 QDRISASS--PRVV-----------G--DARARALXADMKRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp CTTCBTTB--CCCS-----------C--HHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred Cccccccc--cCcC-----------C--HHHHHHHHHhhcCCeEEEEeccccCCHHHHHHH
Confidence 99985311 0000 0 1111111111 2467889999999999999964
No 107
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.52 E-value=2.9e-14 Score=116.74 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=77.4
Q ss_pred ccceeeeecCCccc-cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRS-ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~-~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++. ++.++..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+
T Consensus 55 ~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 55 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 35678999999987 67788999999999999999998 67777777776666543223578999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..++... .. +..... ....+.+++|||++|.||.++|..
T Consensus 125 Dl~~~r~v~--~~------------~~~~~a---~~~~~~~~e~SA~~g~~v~~lf~~ 165 (192)
T 2cjw_A 125 DLVRXREVS--VS------------EGRAXA---VVFDXKFIETSAAVQHNVKELFEG 165 (192)
T ss_dssp TCGGGCCSC--HH------------HHHHHH---HHTTCEEEECBTTTTBSHHHHHHH
T ss_pred hhhcccccc--HH------------HHHHHH---HHhCCceEEeccccCCCHHHHHHH
Confidence 986532110 00 011111 113456789999999999999964
No 108
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.51 E-value=3.8e-15 Score=120.80 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=82.0
Q ss_pred ecccceeEEEEee-------eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCccc-ccHHHHHHHH
Q psy6623 87 VKTTGIVEVHFSF-------KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT-NRMQESLKLF 158 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-------~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~-~~l~e~~~~~ 158 (262)
.||+|+......+ +.+.+.+||++|++.++.+|..|+++++++++|+|+++ . .++.....|+
T Consensus 34 ~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~s~~~~~~~~ 103 (184)
T 2zej_A 34 SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK----------GQAEVDAMKPWL 103 (184)
T ss_dssp ---CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG----------CHHHHHTHHHHH
T ss_pred ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc----------chhHHHHHHHHH
Confidence 5677766544432 36789999999999999999999999999999999997 3 2455555666
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccc----eeecccccccc-eee
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDS----ICNNKWFTDTS-IIL 232 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~----~~~~tsA~d~~-~I~ 232 (262)
..+... ..++|++|++||+|+..++..... ..-....+.. ..+ .+++|||+++. ++.
T Consensus 104 ~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 166 (184)
T 2zej_A 104 FNIKAR--ASSSPVILVGTHLDVSDEKQRKAC---------------MSKITKELLNKRGFPAIRDYHFVNATEESDALA 166 (184)
T ss_dssp HHHHHH--CTTCEEEEEEECGGGCCHHHHHHH---------------HHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHH
T ss_pred HHHHhh--CCCCcEEEEEECCCcccchhhHHH---------------HHHHHHHHHHhcCCcchhheEEEecccCchhHH
Confidence 655432 247899999999999754321100 0011111211 223 27899999996 888
Q ss_pred eeehh
Q psy6623 233 FLNKK 237 (262)
Q Consensus 233 ~~f~~ 237 (262)
++++.
T Consensus 167 ~l~~~ 171 (184)
T 2zej_A 167 KLRKT 171 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 109
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.50 E-value=3.1e-14 Score=125.07 Aligned_cols=117 Identities=13% Similarity=0.002 Sum_probs=79.1
Q ss_pred ecccceeEEEEee-eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhC
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNN 164 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~ 164 (262)
.||+|.... +.+ .+-++.+||+ |++++.+|..||++++++|+|+|+++ .. ++.....|+..+..
T Consensus 48 ~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~~~- 113 (301)
T 1u0l_A 48 KIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLAEK- 113 (301)
T ss_dssp CCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHHHH-
T ss_pred CCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHHHH-
Confidence 466664332 222 2237999999 99999999999999999999999997 33 33333344443322
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++||+||+||..++.. ... .++. +.+... +.+++|||++|.||+++|..
T Consensus 114 ---~~~piilv~NK~DL~~~~~v-~~~--------------~~~~-~~~~~~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 114 ---NELETVMVINKMDLYDEDDL-RKV--------------RELE-EIYSGL-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp ---TTCEEEEEECCGGGCCHHHH-HHH--------------HHHH-HHHTTT-SCEEECCTTTCTTHHHHHHH
T ss_pred ---CCCCEEEEEeHHHcCCchhH-HHH--------------HHHH-HHHhhh-CcEEEEECCCCcCHHHHHHH
Confidence 37999999999999653211 000 1121 222222 66889999999999999963
No 110
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.23 E-value=2.3e-15 Score=123.86 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=78.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~NK 143 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTK 143 (204)
Confidence 34678899999999999999999999999999999998 56666665 344333322 237899999999
Q ss_pred CchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 179 KDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 179 ~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
+|+..++.....+... ...... ............+ .+++|||++|+||+++|+.
T Consensus 144 ~Dl~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 144 LDLRDDKDTIEKLKEK---KLTPIT--YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
Confidence 9997543111111000 000000 0001111111223 5788999999999999963
No 111
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.47 E-value=1e-13 Score=113.42 Aligned_cols=120 Identities=14% Similarity=0.121 Sum_probs=77.4
Q ss_pred eccceeeeecCCccccchh-h--hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 100 KNLNFKLFDVGGQRSERKK-W--IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~-w--~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
+.+.+++||++|++.++.. | ..||++++++|+|+|+++- ..+.+.....++..+.. ...++|++||+
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~--~~~~~piilv~ 136 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYK--VNPDMNFEVFI 136 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHH--HCTTCEEEEEE
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHh--cCCCCcEEEEE
Confidence 4588999999999998665 4 8999999999999999971 11445555555555532 23579999999
Q ss_pred eCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 177 NKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 177 NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||+|+..+.......... ...+ ..+.........+.+++|||++ +||.++|..
T Consensus 137 nK~Dl~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 137 HKVDGLSDDHKIETQRDI-------HQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp ECGGGSCHHHHHHHHHHH-------HHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred eccccCchhhhhHHHhHH-------HHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence 999986421100000000 0000 1111111112457889999999 999999963
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=123.85 Aligned_cols=108 Identities=10% Similarity=0.025 Sum_probs=78.5
Q ss_pred eccceeeee-----------------------cCCccccchhhhcccc---------------------CCCEEEEeeec
Q psy6623 100 KNLNFKLFD-----------------------VGGQRSERKKWIHCFE---------------------DVTAIIFCVAM 135 (262)
Q Consensus 100 ~~~~~~i~D-----------------------~~Gq~~~r~~w~~~f~---------------------~~~~iIfv~dl 135 (262)
..+.+++|| ++||++++.+|..||+ +++++|+|+|+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 457899999 9999999999999998 89999999999
Q ss_pred cccccccccCccc--ccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHh
Q psy6623 136 SEYDQVLHEDETT--NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESL 213 (262)
Q Consensus 136 s~~d~~~~e~~~~--~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f 213 (262)
++ . .++.....|+..+.......++|++|++||+|+..++.. +-.....
T Consensus 173 t~----------~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-------------------~~~~~~~ 223 (255)
T 3c5h_A 173 SR----------GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-------------------RDAHTFA 223 (255)
T ss_dssp BC--------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-------------------HHHHHHH
T ss_pred CC----------CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-------------------HHHHHHH
Confidence 98 5 677777777776654322247999999999999643211 0111111
Q ss_pred hh-ccceeecccccccceeeeeeh
Q psy6623 214 KL-FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 214 ~~-~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ..+.+++|||++|.||.++|+
T Consensus 224 ~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 224 LSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp HTSSSCCEEECBTTTTBSHHHHHH
T ss_pred HhcCCCeEEEEECCCCCCHHHHHH
Confidence 11 246688999999999999995
No 113
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.44 E-value=9.8e-14 Score=122.13 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=79.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~ 269 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFHHVRAKWYPEVRHH--CPNTPIILVGTKL 269 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTSCEEEEEECH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhh--CCCCcEEEEEEch
Confidence 4567799999999999999999999999999999998 56676665 344444332 2379999999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-....+... ...... ............+ .+++|||++|.||.++|+.
T Consensus 270 Dl~~~~~~~~~~~~~--~~~~v~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 323 (332)
T 2wkq_A 270 DLRDDKDTIEKLKEK--KLTPIT---YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323 (332)
T ss_dssp HHHTCHHHHHHHHHT--TCCCCC---HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred hcccccchhhhcccc--cccccc---HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHH
Confidence 996532110000000 000000 1111111111333 6889999999999999963
No 114
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.44 E-value=1.9e-13 Score=120.30 Aligned_cols=125 Identities=21% Similarity=0.283 Sum_probs=87.7
Q ss_pred ecccceeEEEEee-eccceeeeecCCcccc-----chhhhccccCCCEEEEeeeccccccccccCcccccHHHH---HHH
Q psy6623 87 VKTTGIVEVHFSF-KNLNFKLFDVGGQRSE-----RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES---LKL 157 (262)
Q Consensus 87 ~pT~Gi~~~~~~~-~~~~~~i~D~~Gq~~~-----r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~---~~~ 157 (262)
.+|+|+....+.+ +++.+.+||++|++.+ +..|..++++++++|+|+|+++ ..++.+. ..+
T Consensus 36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~----------~~s~~~l~~~~~~ 105 (307)
T 3r7w_A 36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES----------TEVLKDIEIFAKA 105 (307)
T ss_dssp CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTC----------SCHHHHHHHHHHH
T ss_pred CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHH
Confidence 5788888777776 5789999999999999 8899999999999999999998 4555544 344
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhh--hhhccCCCcccCCCCCCCCcchhHHHHHHhhhc---cceeecccccccceee
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFE--EKIKKSPLTICFPEYAGKRPGERNRMQESLKLF---DSICNNKWFTDTSIIL 232 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~--~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~---~~~~~~tsA~d~~~I~ 232 (262)
+..+... ..++|++|++||+|+.. ++....... ..-+.+..... .+.+++|||++ .++.
T Consensus 106 l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~-------------~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~ 169 (307)
T 3r7w_A 106 LKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIM-------------MKNLSETSSEFGFPNLIGFPTSIWD-ESLY 169 (307)
T ss_dssp HHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHH-------------HHHHHHHHHTTTCCSCEEEECCTTS-SHHH
T ss_pred HHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHH-------------HHHHHHHHHHcCCCCeEEEEeeecC-ChHH
Confidence 4444432 34799999999999975 221000000 01111111222 37889999999 8888
Q ss_pred eeehh
Q psy6623 233 FLNKK 237 (262)
Q Consensus 233 ~~f~~ 237 (262)
++|..
T Consensus 170 e~~~~ 174 (307)
T 3r7w_A 170 KAWSQ 174 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 115
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.42 E-value=3.6e-13 Score=107.12 Aligned_cols=109 Identities=18% Similarity=0.117 Sum_probs=75.5
Q ss_pred eEEEEeeeccceeeeecCCccccc------hhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSER------KKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
....+.+++..+++|||+|++.++ .++..|++ +++++++|+|.++ ..+. ..++..+..
T Consensus 41 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~---~~~~~~~~~- 106 (165)
T 2wji_A 41 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LERN---LYLTLQLME- 106 (165)
T ss_dssp CEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHHH---HHHHHHHHH-
T ss_pred eEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhHh---HHHHHHHHh-
Confidence 344455667889999999999876 44577776 8999999999987 2222 334444443
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++|++|++||+|+..++-.... ...+.+. ..+.+++|||++|+||+++|+
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~~~~~~---------------~~~~~~~---~~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 107 ---MGANLLLALNKMDLAKSLGIEID---------------VDKLEKI---LGVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCC---------------HHHHHHH---HTSCEEECBGGGTBSHHHHHH
T ss_pred ---cCCCEEEEEEchHhccccChhhH---------------HHHHHHH---hCCCEEEEEcCCCCCHHHHHH
Confidence 26899999999999764311110 1112221 235688999999999999995
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.40 E-value=3.5e-13 Score=105.78 Aligned_cols=108 Identities=17% Similarity=0.046 Sum_probs=75.0
Q ss_pred eeEEEEeeeccceeeeecCCccc-------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.....+..++..+.+||++|+.. ++..|..++++++++|+|+|+++ . +.....++..++..
T Consensus 39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~--~~~~~~~~~~~~~~ 106 (161)
T 2dyk_A 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA----------E--LTQADYEVAEYLRR 106 (161)
T ss_dssp CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS----------C--CCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC----------c--ccHhHHHHHHHHHh
Confidence 44455666777899999999987 46678889999999999999986 1 11112223333322
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeeh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~ 236 (262)
.+.|+++++||+|+..++ ....+ +. ...+ .++++||++|.||+++|+
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~---~~~~~--------------~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 107 ---KGKPVILVATKVDDPKHE---LYLGP--------------LY-----GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp ---HTCCEEEEEECCCSGGGG---GGCGG--------------GG-----GGSSCSCEECBTTTTBSHHHHHH
T ss_pred ---cCCCEEEEEECcccccch---HhHHH--------------HH-----hCCCCCeEEEecccCCChHHHHH
Confidence 368999999999997642 11111 11 1123 478999999999999995
No 117
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.38 E-value=1e-12 Score=107.70 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=84.9
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 104 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELR 104 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555543 23444544 678899999999999999999999999999999987 455555555655544
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. ...+.|+++++||+|+...+-.. ..-.+.......+.++.|||+++.|+.++|+.
T Consensus 105 ~~-~~~~~~i~~v~nK~Dl~~~~~~~-----------------~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 105 DH-ADSNIVIMLVGNKSDLRHLRAVP-----------------TDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp HH-SCTTCEEEEEEECTTCGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred Hh-cCCCCeEEEEEECcccccccCcC-----------------HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 32 22468999999999996532100 11111222224566777999999999999964
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.36 E-value=3.8e-13 Score=108.00 Aligned_cols=115 Identities=13% Similarity=0.250 Sum_probs=76.4
Q ss_pred ceeEEEEeeeccceeeeecCCccccch---------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSERK---------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r~---------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
+.....+.+++..+.+|||+|++.... .| .++++++++|+|+|+++ ..++. ...++..+
T Consensus 41 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~----------~~s~~-~~~~~~~~ 108 (172)
T 2gj8_A 41 DVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTT----------TDAVD-PAEIWPEF 108 (172)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTT----------CCCCS-HHHHCHHH
T ss_pred ceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CCCHH-HHHHHHHH
Confidence 344455666777899999999975321 22 46899999999999997 23322 23455444
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHH
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
.+. ...++|++|++||+|+..+.. .+.. ...+.+++|||++|+||.++|+ +|.
T Consensus 109 ~~~-~~~~~p~ilv~NK~Dl~~~~~---~~~~---------------------~~~~~~~~~SA~~g~gv~~l~~--~l~ 161 (172)
T 2gj8_A 109 IAR-LPAKLPITVVRNKADITGETL---GMSE---------------------VNGHALIRLSARTGEGVDVLRN--HLK 161 (172)
T ss_dssp HHH-SCTTCCEEEEEECHHHHCCCC---EEEE---------------------ETTEEEEECCTTTCTTHHHHHH--HHH
T ss_pred HHh-cccCCCEEEEEECccCCcchh---hhhh---------------------ccCCceEEEeCCCCCCHHHHHH--HHH
Confidence 432 224789999999999964211 0100 0225578999999999999995 444
Q ss_pred hhc
Q psy6623 242 EKI 244 (262)
Q Consensus 242 ~~i 244 (262)
+.+
T Consensus 162 ~~~ 164 (172)
T 2gj8_A 162 QSM 164 (172)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.36 E-value=5.7e-13 Score=125.75 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=74.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
++++.+||++|++.++..+..++++++++|+|+|+++ .+++..++..+.... .+.|++|++||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~~~~~~l~~~~-----~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKHYWLRHIEKYG-----GKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHHHHHHHHHHHS-----SSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHHHHHHHHHHhC-----CCCCEEEEEECCC
Confidence 5789999999999999999999999999999999987 344555544444432 3689999999999
Q ss_pred hhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 181 LFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 181 l~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+..++- +. .+.+.+.+....+.+++|||++|.||+++|..
T Consensus 162 l~~~~~----v~-------------~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~ 201 (535)
T 3dpu_A 162 ENPSYN----IE-------------QKKINERFPAIENRFHRISCKNGDGVESIAKS 201 (535)
T ss_dssp TCTTCC----CC-------------HHHHHHHCGGGTTCEEECCC-----CTTHHHH
T ss_pred cccccc----cC-------------HHHHHHHHHhcCCceEEEecCcccCHHHHHHH
Confidence 865321 00 22334444444566899999999999999964
No 120
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.34 E-value=1.8e-12 Score=108.68 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=79.0
Q ss_pred ccceeEEEEeeeccceeeeecCCc------ccc---chhhhccccCCCEEEEeeeccccccccccCccccc--HHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQ------RSE---RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNR--MQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq------~~~---r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~--l~e~~~~ 157 (262)
|..+....+..++..+.+|||+|+ +.. ...+..+++.++++|+|+|+++ ..+ ......+
T Consensus 63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~ 132 (228)
T 2qu8_A 63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE----------QCGLTIKEQINL 132 (228)
T ss_dssp --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTC----------TTSSCHHHHHHH
T ss_pred ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccc----------ccCcchHHHHHH
Confidence 445555556667789999999999 331 1234456889999999999997 223 3445666
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-cc--ceeecccccccceeeee
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FD--SICNNKWFTDTSIILFL 234 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~--~~~~~tsA~d~~~I~~~ 234 (262)
+..+... ..+.|++||+||+|+...+ .+.. +.......+.. .. +.+++|||++|+||.++
T Consensus 133 ~~~l~~~--~~~~piilv~nK~Dl~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 195 (228)
T 2qu8_A 133 FYSIKSV--FSNKSIVIGFNKIDKCNMD----SLSI-----------DNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQA 195 (228)
T ss_dssp HHHHHTC--C-CCCEEEEEECGGGCC------CCCH-----------HHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHH
T ss_pred HHHHHHh--hcCCcEEEEEeCcccCCch----hhHH-----------HHHHHHHHHHHhcCCCceEEEEecccCCCHHHH
Confidence 7666542 3579999999999996532 1100 01111122222 22 67889999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|+.
T Consensus 196 ~~~ 198 (228)
T 2qu8_A 196 KIT 198 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 964
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.32 E-value=3.8e-12 Score=103.85 Aligned_cols=122 Identities=10% Similarity=0.084 Sum_probs=83.3
Q ss_pred eccccee--EEEEeeec--cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 87 VKTTGIV--EVHFSFKN--LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 87 ~pT~Gi~--~~~~~~~~--~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.||+|.. ...+.+++ +.+++||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 59 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~ 128 (191)
T 1oix_A 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELR 128 (191)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHH
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence 4555643 33444544 567789999999999999999999999999999987 444544444555443
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.. ...+.|+++++||+|+...+-.. ....+.......+.+..|||+|+.++.++|+
T Consensus 129 ~~-~~~~~~i~~v~nK~Dl~~~~~~~-----------------~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 129 DH-ADSNIVIMLVGNKSDLRHLRAVP-----------------TDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp HH-SCTTCEEEEEEECGGGGGGCCSC-----------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred Hh-cCCCCcEEEEEECcccccccccC-----------------HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 32 22468999999999996532100 1111222222456677899999999999995
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=3.1e-12 Score=103.24 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=79.9
Q ss_pred eEEEEeeeccceeeeecCCccccc------hhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQRSER------KKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~~~r------~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
....+.+++..+.+|||+|++.++ .+|..|++ +++++++|+|.+++ .....++..+..
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~~- 110 (188)
T 2wjg_A 45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL-------------ERNLYLTLQLME- 110 (188)
T ss_dssp EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH-------------HHHHHHHHHHHT-
T ss_pred eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH-------------HHHHHHHHHHHh-
Confidence 444566678899999999999885 56788885 49999999998862 223444444443
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.+.|++|++||+|+..++-.... ...+.+. ..+.++++||+++.||.++|+ ++...+
T Consensus 111 ---~~~piilv~nK~Dl~~~~~~~~~---------------~~~~~~~---~~~~~~~~Sa~~~~~v~~l~~--~i~~~~ 167 (188)
T 2wjg_A 111 ---MGANLLLALNKMDLAKSLGIEID---------------VDKLEKI---LGVKVVPLSAAKKMGIEELKK--AISIAV 167 (188)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCC---------------HHHHHHH---HTSCEEECBGGGTBSHHHHHH--HHHHHH
T ss_pred ---cCCCEEEEEEhhhccccccchHH---------------HHHHHHH---hCCCeEEEEecCCCCHHHHHH--HHHHHH
Confidence 36899999999999764311110 1122221 236688999999999999995 444444
Q ss_pred c
Q psy6623 245 K 245 (262)
Q Consensus 245 ~ 245 (262)
.
T Consensus 168 ~ 168 (188)
T 2wjg_A 168 K 168 (188)
T ss_dssp T
T ss_pred H
Confidence 3
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=2.3e-13 Score=112.89 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=63.1
Q ss_pred eccceeeeecCCccccchhhhccccC----CCEEEEeeecc-ccccccccCcccccHHHHHHHHHHHHhCC---CCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFED----VTAIIFCVAMS-EYDQVLHEDETTNRMQESLKLFDSICNNK---WFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~----~~~iIfv~dls-~~d~~~~e~~~~~~l~e~~~~~~~i~~~~---~~~~~p 171 (262)
....+.+||++|++.++..|..|+++ ++++|+|+|++ + ..++.+...++..++... ...++|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCCCC
Confidence 56789999999999999999999988 89999999999 5 577788888888877542 225799
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++|++||+|+..
T Consensus 123 ~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 123 ILIACNKSELFT 134 (218)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEEchHhcc
Confidence 999999999965
No 124
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.29 E-value=2.2e-12 Score=104.71 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=75.4
Q ss_pred ccceeeeecCC----------ccccchhhhccccCC---CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGG----------QRSERKKWIHCFEDV---TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~G----------q~~~r~~w~~~f~~~---~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
+..+.+|||+| ++.++..|..|++++ +++|+|+|+++ ..+..+ ..+++.+..
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~~~---- 132 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFLKY---- 132 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHHHH----
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHHHH----
Confidence 34799999999 888999999999887 99999999987 233332 222222222
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
.+.|+++++||+|+..++-.. . ..+.+.+.+.. ..+.++++||++|.||.++|+ +|.+.
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~--~l~~~ 192 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGKWD----K-----------HAKVVRQTLNIDPEDELILFSSETKKGKDEAWG--AIKKM 192 (195)
T ss_dssp TTCCEEEEEECGGGSCGGGHH----H-----------HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHH--HHHHH
T ss_pred cCCCEEEEEECcccCChHHHH----H-----------HHHHHHHHHcccCCCceEEEEccCCCCHHHHHH--HHHHH
Confidence 468999999999996532100 0 01223332322 356788999999999999995 44443
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.27 E-value=7.7e-13 Score=106.75 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=68.7
Q ss_pred ceeeeecCC-----------ccccchhhhccccC-CCEEEEeeeccccccccccCcccccHHHHHHHHHH---------H
Q psy6623 103 NFKLFDVGG-----------QRSERKKWIHCFED-VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS---------I 161 (262)
Q Consensus 103 ~~~i~D~~G-----------q~~~r~~w~~~f~~-~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~---------i 161 (262)
.+.+||++| ++.++..|..|+++ ++++++|+++.+ ..++.+....|.. +
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d----------~~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD----------GKAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEE----------TTHHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEc----------chhhhhHHHhhhccCccHHHHHH
Confidence 789999999 88899999999987 777666666666 3444433222211 1
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.......++|++|++||+|+..++ . . ..+.+.+.+.. ....+++|||++|+||+++|+.
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~--~----~-----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 177 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV--Q----E-----------VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 177 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH--H----H-----------HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHH
T ss_pred HHHHHhcCCceEEEeehHhccCcH--H----H-----------HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHH
Confidence 111011468999999999997532 0 0 01222222211 1234689999999999999963
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.22 E-value=1.8e-11 Score=105.88 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=73.3
Q ss_pred ccceeeeecCCccccc------hhhhcccc--CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 101 NLNFKLFDVGGQRSER------KKWIHCFE--DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r------~~w~~~f~--~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
+..+.+|||+|+.+++ .++..|+. +++++|+|+|.++ ..+ ...+...+.. .++|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~e~---~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------LER---NLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------HHH---HHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------hHh---HHHHHHHHHh----cCCCE
Confidence 7889999999999887 56778886 5999999999987 222 2344444443 36899
Q ss_pred EEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 173 ILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 173 il~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+|++||+|+..++-.... ..-+.+. ..+.+++|||++|+||.++|+.
T Consensus 111 ilv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 111 TIALNMIDVLDGQGKKIN---------------VDKLSYH---LGVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp EEEEECHHHHHHTTCCCC---------------HHHHHHH---HTSCEEECBTTTTBSHHHHHHH
T ss_pred EEEEEChhhCCcCCcHHH---------------HHHHHHH---cCCCEEEEEccCCCCHHHHHHH
Confidence 999999999764321110 1112221 2467889999999999999963
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.21 E-value=1.1e-11 Score=100.15 Aligned_cols=113 Identities=11% Similarity=0.029 Sum_probs=74.6
Q ss_pred eccceeeeecCC----------ccccchhhhccccCC---CEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 100 KNLNFKLFDVGG----------QRSERKKWIHCFEDV---TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 100 ~~~~~~i~D~~G----------q~~~r~~w~~~f~~~---~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+..+.+||++| ++.++..+..|++++ +++++|+|.++.. .........++..
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~------ 131 (195)
T 3pqc_A 66 VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKS------ 131 (195)
T ss_dssp ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHH------
T ss_pred ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHH------
Confidence 356789999999 888899999999876 8999999987611 1111222222222
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
.++|++||+||+|+..+.-.. . ..+.+...+.. ..+.++++||++|+||.++|+ +|.+.+
T Consensus 132 -~~~p~i~v~nK~Dl~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~--~l~~~l 192 (195)
T 3pqc_A 132 -LNIPFTIVLTKMDKVKMSERA----K-----------KLEEHRKVFSKYGEYTIIPTSSVTGEGISELLD--LISTLL 192 (195)
T ss_dssp -TTCCEEEEEECGGGSCGGGHH----H-----------HHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHH--HHHHHH
T ss_pred -cCCCEEEEEEChhcCChHHHH----H-----------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHH--HHHHHh
Confidence 168999999999996421000 0 02223333333 346788999999999999995 455443
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.19 E-value=1.2e-11 Score=102.68 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=74.8
Q ss_pred eeccceeeeecCC----------ccccchhhhccccC---CCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 99 FKNLNFKLFDVGG----------QRSERKKWIHCFED---VTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 99 ~~~~~~~i~D~~G----------q~~~r~~w~~~f~~---~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.++..+.+|||+| ++.++..+..|+++ ++++|+|+|.++ .-. .....++..+..
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~l~~-- 142 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR----------PLT-ELDRRMIEWFAP-- 142 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCC-HHHHHHHHHHGG--
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC----------CCC-HHHHHHHHHHHh--
Confidence 3468899999999 55567777788877 777999999986 111 222333333332
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeeeehhh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFLNKKD 238 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~~ 238 (262)
.+.|++||+||+|+....-.... ...+.+.+.. ..+.++++||++|+||.++|+
T Consensus 143 --~~~p~i~v~nK~Dl~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~-- 203 (223)
T 4dhe_A 143 --TGKPIHSLLTKCDKLTRQESINA---------------LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHA-- 203 (223)
T ss_dssp --GCCCEEEEEECGGGSCHHHHHHH---------------HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHH--
T ss_pred --cCCCEEEEEeccccCChhhHHHH---------------HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHH--
Confidence 46899999999999653211000 1222222221 346688999999999999995
Q ss_pred HHHhhcc
Q psy6623 239 LFEEKIK 245 (262)
Q Consensus 239 lL~~~i~ 245 (262)
+|...+.
T Consensus 204 ~l~~~~~ 210 (223)
T 4dhe_A 204 LIESWLR 210 (223)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 4555544
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.16 E-value=2.4e-11 Score=104.20 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred eeEEEEeeeccceeeeecCCccccch----------hhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERK----------KWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~----------~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.....+.+++..+.+|||+|+..++. ++..|+ ++++++|+|+|.++ ..+ ...+..
T Consensus 38 ~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~----------~~~---~~~l~~ 104 (256)
T 3iby_A 38 KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH----------LER---HLYLTS 104 (256)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG----------HHH---HHHHHH
T ss_pred EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC----------chh---HHHHHH
Confidence 44556667788999999999988875 667788 89999999999987 222 233333
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.. .+.|++|++||+|+...+-.... ...+.+. ..+.+++|||++|.||.++|+.
T Consensus 105 ~l~~----~~~pvilv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 105 QLFE----LGKPVVVALNMMDIAEHRGISID---------------TEKLESL---LGCSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp HHTT----SCSCEEEEEECHHHHHHTTCEEC---------------HHHHHHH---HCSCEEECBGGGTBSHHHHHHH
T ss_pred HHHH----cCCCEEEEEEChhcCCcCCcHHH---------------HHHHHHH---cCCCEEEEECCCCCCHHHHHHH
Confidence 3332 26899999999999764311100 1222222 2467899999999999999953
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.16 E-value=3.6e-11 Score=110.14 Aligned_cols=118 Identities=15% Similarity=0.119 Sum_probs=79.2
Q ss_pred ccceeEEEEeeecc-ceeeeecCCccccchh-------hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNL-NFKLFDVGGQRSERKK-------WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDS 160 (262)
Q Consensus 89 T~Gi~~~~~~~~~~-~~~i~D~~Gq~~~r~~-------w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~ 160 (262)
|+......+.+.+. .+.+|||+|+..+..+ +..++++++++|+|+|.+. ......++.+
T Consensus 69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~l~~--- 135 (423)
T 3qq5_A 69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDVVNL--- 135 (423)
T ss_dssp -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHHHHH---
T ss_pred eeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHHHHH---
Confidence 44455566666665 8999999999887655 4558999999999999843 2333333333
Q ss_pred HHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-hccceeecccccccceeeeeehhhH
Q psy6623 161 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-LFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 161 i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
+... +.|+++|+||+|+..+... .. .+.+. ...+.++++||++|+||+++|+ +
T Consensus 136 l~~~----~~piIvV~NK~Dl~~~~~~--~~------------------~~~l~~~~g~~v~~vSAktg~gI~eL~~--~ 189 (423)
T 3qq5_A 136 FKEM----EIPFVVVVNKIDVLGEKAE--EL------------------KGLYESRYEAKVLLVSALQKKGFDDIGK--T 189 (423)
T ss_dssp HHHT----TCCEEEECCCCTTTTCCCT--HH------------------HHHSSCCTTCCCCCCSSCCTTSTTTHHH--H
T ss_pred HHhc----CCCEEEEEeCcCCCCccHH--HH------------------HHHHHHHcCCCEEEEECCCCCCHHHHHH--H
Confidence 3322 6899999999999753211 01 11111 1235688999999999999995 4
Q ss_pred HHhhcc
Q psy6623 240 FEEKIK 245 (262)
Q Consensus 240 L~~~i~ 245 (262)
|.+.+.
T Consensus 190 L~~~l~ 195 (423)
T 3qq5_A 190 ISEILP 195 (423)
T ss_dssp HHHHSC
T ss_pred HHHhhh
Confidence 555553
No 131
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.16 E-value=3.6e-11 Score=103.17 Aligned_cols=111 Identities=19% Similarity=0.149 Sum_probs=78.3
Q ss_pred eeEEEEeeeccceeeeecCCccccchhh------hccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERKKW------IHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~~w------~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.....+..++..+.+||++|+..++..| ..|+ ++++++|+|+|.++ ..+ .+.++..+..
T Consensus 42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~----------~~~---~~~~~~~l~~ 108 (258)
T 3a1s_A 42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN----------PEQ---SLYLLLEILE 108 (258)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS----------CHH---HHHHHHHHHT
T ss_pred EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc----------hhh---HHHHHHHHHh
Confidence 3444555667899999999999888654 5666 58999999999987 222 3345555553
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|++|++||+|+..++-.... ...+.+. ..+.+++|||++|.||.++|+.
T Consensus 109 ----~~~pvilv~NK~Dl~~~~~i~~~---------------~~~l~~~---lg~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 109 ----MEKKVILAMTAIDEAKKTGMKID---------------RYELQKH---LGIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp ----TTCCEEEEEECHHHHHHTTCCBC---------------HHHHHHH---HCSCEEECCTTTCTTHHHHHHH
T ss_pred ----cCCCEEEEEECcCCCCccchHHH---------------HHHHHHH---cCCCEEEEEeeCCcCHHHHHHH
Confidence 26899999999999764311110 1222222 3467889999999999999964
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.16 E-value=4.8e-11 Score=103.22 Aligned_cols=117 Identities=18% Similarity=0.070 Sum_probs=78.4
Q ss_pred eeEEEEeeeccceeeeecCCccccc----------hhhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSER----------KKWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFD 159 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r----------~~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~ 159 (262)
.....+..++..+.+|||+|+..++ ..+..|+ ++++++|+|+|.++ ..+......++.
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~~~~~~~~l~ 109 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LERNLYLTLQLL 109 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHHHHHHHHHHH
Confidence 3445566677889999999998877 3345554 79999999999987 333333333332
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhH
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~l 239 (262)
+. +.|+++++||+|+..++-.... .+.+.+. ..+.++++||++|.||.++|+ .
T Consensus 110 ~~-------~~p~ivv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~~i~~SA~~g~gi~el~~--~ 162 (274)
T 3i8s_A 110 EL-------GIPCIVALNMLDIAEKQNIRIE---------------IDALSAR---LGCPVIPLVSTRGRGIEALKL--A 162 (274)
T ss_dssp HH-------TCCEEEEEECHHHHHHTTEEEC---------------HHHHHHH---HTSCEEECCCGGGHHHHHHHH--H
T ss_pred hc-------CCCEEEEEECccchhhhhHHHH---------------HHHHHHh---cCCCEEEEEcCCCCCHHHHHH--H
Confidence 22 6899999999999764311110 1222222 246788999999999999995 4
Q ss_pred HHhhcc
Q psy6623 240 FEEKIK 245 (262)
Q Consensus 240 L~~~i~ 245 (262)
+.+.+.
T Consensus 163 i~~~~~ 168 (274)
T 3i8s_A 163 IDRYKA 168 (274)
T ss_dssp HHTCCC
T ss_pred HHHHHh
Confidence 555443
No 133
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.14 E-value=1.4e-10 Score=101.94 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=80.3
Q ss_pred EEEEeee-ccceeeeecCCccccc----------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 94 EVHFSFK-NLNFKLFDVGGQRSER----------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 94 ~~~~~~~-~~~~~i~D~~Gq~~~r----------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
...+..+ +..+.+|||+|+...+ ..+..++++++++|+|+|.++ ..+..+...|++.+.
T Consensus 50 ~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 50 LGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIK 119 (308)
T ss_dssp EEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTG
T ss_pred EEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHH
Confidence 3344556 7889999999996544 677889999999999999997 344444333344443
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
. .++|++|++||+|+...+-. +.. ....+.+.+. ....++.+||++|.||.++|+ ++..
T Consensus 120 ~----~~~pvilV~NK~Dl~~~~~~---~~~-----------~~~~l~~~~~-~~~~i~~vSA~~g~gv~~L~~--~l~~ 178 (308)
T 3iev_A 120 P----LNKPVIVVINKIDKIGPAKN---VLP-----------LIDEIHKKHP-ELTEIVPISALKGANLDELVK--TILK 178 (308)
T ss_dssp G----GCCCEEEEEECGGGSSSGGG---GHH-----------HHHHHHHHCT-TCCCEEECBTTTTBSHHHHHH--HHHH
T ss_pred h----cCCCEEEEEECccCCCCHHH---HHH-----------HHHHHHHhcc-CCCeEEEEeCCCCCCHHHHHH--HHHH
Confidence 2 36899999999998621100 000 0222222221 124578899999999999995 4555
Q ss_pred hccC
Q psy6623 243 KIKK 246 (262)
Q Consensus 243 ~i~~ 246 (262)
.+..
T Consensus 179 ~l~~ 182 (308)
T 3iev_A 179 YLPE 182 (308)
T ss_dssp HSCB
T ss_pred hCcc
Confidence 5543
No 134
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.3e-11 Score=100.03 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=62.5
Q ss_pred eccceeeeecCCccccchhhhccccC----CCEEEEeeecc-ccccccccCcccccHHHHHHHHHHHHhCC---CCCCCe
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFED----VTAIIFCVAMS-EYDQVLHEDETTNRMQESLKLFDSICNNK---WFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~----~~~iIfv~dls-~~d~~~~e~~~~~~l~e~~~~~~~i~~~~---~~~~~p 171 (262)
.+..+.+||++|++.++..|..|+.+ ++++|+|+|++ + ..++.+...++..++... ...++|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccCCC
Confidence 67889999999999999999999987 89999999998 5 567777778887776532 225799
Q ss_pred EEEEeeCCchhh
Q psy6623 172 IILFLNKKDLFE 183 (262)
Q Consensus 172 iil~~NK~Dl~~ 183 (262)
++||+||+|+..
T Consensus 159 ~ilv~nK~Dl~~ 170 (193)
T 2ged_A 159 ILIACNKSELFT 170 (193)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEEchHhcC
Confidence 999999999875
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.11 E-value=9.1e-11 Score=108.56 Aligned_cols=114 Identities=10% Similarity=0.128 Sum_probs=78.9
Q ss_pred EEEeeeccceeeeecCC----------ccccchhhhc-cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 95 VHFSFKNLNFKLFDVGG----------QRSERKKWIH-CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~G----------q~~~r~~w~~-~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
..+..++..+++|||+| ++.++.++.. +++.++++|+|+|.++ .-......++..+..
T Consensus 236 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-----------~~~~~~~~~~~~~~~ 304 (456)
T 4dcu_A 236 TSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-----------GIIEQDKRIAGYAHE 304 (456)
T ss_dssp EEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHHH
T ss_pred EEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-----------CcCHHHHHHHHHHHH
Confidence 44566777899999999 8888887765 7899999999999886 112333344444433
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..++-.. ..+ .+++.+.+.. ..+.+++|||++|+||.++|..
T Consensus 305 ----~~~~~ilv~NK~Dl~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 362 (456)
T 4dcu_A 305 ----AGKAVVIVVNKWDAVDKDEST--------------MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA 362 (456)
T ss_dssp ----TTCEEEEEEECGGGSCCCSSH--------------HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred ----cCCCEEEEEEChhcCCCchHH--------------HHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHH
Confidence 468999999999986421000 001 3344443332 2356889999999999999975
No 136
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.09 E-value=2.9e-10 Score=104.59 Aligned_cols=120 Identities=11% Similarity=-0.002 Sum_probs=80.6
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+.+....+..++..+.+|||+|++.+.+.+..++..++++|+|+|.++ ..+.+..+++..+.. .
T Consensus 90 iTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~-----------g~~~qt~~~l~~~~~---~ 155 (434)
T 1zun_B 90 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY-----------GVQTQTRRHSYIASL---L 155 (434)
T ss_dssp CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---T
T ss_pred cEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH---c
Confidence 34555555666678889999999999999999999999999999999986 122333444332221 1
Q ss_pred CCCeEEEEeeCCchhhh---hhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEE---KIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~---kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...|++|++||+|+... ++.. + .+.+.+.+.. ..+.++++||++|.||.++|..
T Consensus 156 ~~~~iIvviNK~Dl~~~~~~~~~~--i--------------~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 156 GIKHIVVAINKMDLNGFDERVFES--I--------------KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp TCCEEEEEEECTTTTTSCHHHHHH--H--------------HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred CCCeEEEEEEcCcCCcccHHHHHH--H--------------HHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 22469999999998641 1100 0 1111111111 2367889999999999998764
No 137
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.09 E-value=4.2e-10 Score=96.92 Aligned_cols=112 Identities=19% Similarity=0.112 Sum_probs=81.0
Q ss_pred eeEEEEeeeccceeeeecCCccccch------hhhccc--cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRSERK------KWIHCF--EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~~r~------~w~~~f--~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
.....+.+++..+.+||++|+..+.. .+..|+ .+++++|+|+|.++ . ...+.++..+..
T Consensus 40 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~---~~~~~~~~~~~~ 106 (271)
T 3k53_A 40 KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC----------L---MRNLFLTLELFE 106 (271)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG----------H---HHHHHHHHHHHH
T ss_pred eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc----------c---hhhHHHHHHHHh
Confidence 34455666778899999999998877 788888 78999999999986 2 345556656654
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ...|+++++||+|+..++-.... ..-+.+. ..+.+++|||++|.||.++|+.
T Consensus 107 ~---~~~p~ilv~NK~Dl~~~~~~~~~---------------~~~l~~~---lg~~~~~~Sa~~g~gi~~l~~~ 159 (271)
T 3k53_A 107 M---EVKNIILVLNKFDLLKKKGAKID---------------IKKMRKE---LGVPVIPTNAKKGEGVEELKRM 159 (271)
T ss_dssp T---TCCSEEEEEECHHHHHHHTCCCC---------------HHHHHHH---HSSCEEECBGGGTBTHHHHHHH
T ss_pred c---CCCCEEEEEEChhcCcccccHHH---------------HHHHHHH---cCCcEEEEEeCCCCCHHHHHHH
Confidence 3 23899999999999764321111 1222222 2467889999999999999964
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.08 E-value=1.2e-10 Score=108.38 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=68.8
Q ss_pred ceeEEEEeeeccceeeeecCCccccchhh--------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQRSERKKW--------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w--------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.+....+.+++..+.+|||+|++.++..| ..++++++++|+|+|.++... ...+.+...++..+
T Consensus 270 d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l- 341 (476)
T 3gee_A 270 DYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAH- 341 (476)
T ss_dssp ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHC-
T ss_pred EEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhc-
Confidence 34455677788999999999998876544 457899999999999997211 12223444444332
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEE 242 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~ 242 (262)
.+.|+++|+||+|+....... .+.+.+. ....++.+||++|+||.++|+ ++.+
T Consensus 342 -----~~~piIvV~NK~Dl~~~~~~~-----------------~~~l~~~---~~~~~i~vSAktg~GI~eL~~--~i~~ 394 (476)
T 3gee_A 342 -----PAAKFLTVANKLDRAANADAL-----------------IRAIADG---TGTEVIGISALNGDGIDTLKQ--HMGD 394 (476)
T ss_dssp -----TTSEEEEEEECTTSCTTTHHH-----------------HHHHHHH---HTSCEEECBTTTTBSHHHHHH--HHTH
T ss_pred -----CCCCEEEEEECcCCCCccchh-----------------HHHHHhc---CCCceEEEEECCCCCHHHHHH--HHHH
Confidence 268999999999986532100 1111111 014578899999999999995 3444
Q ss_pred hc
Q psy6623 243 KI 244 (262)
Q Consensus 243 ~i 244 (262)
.+
T Consensus 395 ~~ 396 (476)
T 3gee_A 395 LV 396 (476)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.06 E-value=9.4e-11 Score=107.87 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=69.1
Q ss_pred eEEEEeeeccceeeeecCCcc--------ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 93 VEVHFSFKNLNFKLFDVGGQR--------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 93 ~~~~~~~~~~~~~i~D~~Gq~--------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
....+.+++..+.+|||||++ .++..|..++++++++|||+|.++ ..... -.++..++..
T Consensus 42 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~----------~~~~~--d~~~~~~l~~ 109 (436)
T 2hjg_A 42 IYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE----------GVTAA--DEEVAKILYR 109 (436)
T ss_dssp EEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT----------CSCHH--HHHHHHHHTT
T ss_pred EEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCHH--HHHHHHHHHH
Confidence 344455677899999999996 678889999999999999999986 22222 2334444432
Q ss_pred CCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 165 KWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+..... ...++. . ..+ .++.+||++|.||.++++.
T Consensus 110 ---~~~pvilv~NK~D~~~~~~---~~~~~~-~------------------lg~~~~~~iSA~~g~gv~~L~~~ 158 (436)
T 2hjg_A 110 ---TKKPVVLAVNKLDNTEMRA---NIYDFY-S------------------LGFGEPYPISGTHGLGLGDLLDA 158 (436)
T ss_dssp ---CCSCEEEEEECCCC--------CCCSSG-G------------------GSSCCCEECBTTTTBTHHHHHHH
T ss_pred ---cCCCEEEEEECccCccchh---hHHHHH-H------------------cCCCCeEEEeCcCCCChHHHHHH
Confidence 4689999999999875321 111110 0 111 3678999999999999963
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.06 E-value=1.6e-10 Score=106.35 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=73.5
Q ss_pred eeEEEEeeeccceeeeecCCccc---------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 92 IVEVHFSFKNLNFKLFDVGGQRS---------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 92 i~~~~~~~~~~~~~i~D~~Gq~~---------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
.....+.+++..+++|||||++. ++..+..++++++++|||+|.++- ..... .++..++
T Consensus 39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~---------~~~~d---~~i~~~l 106 (439)
T 1mky_A 39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG---------ITKED---ESLADFL 106 (439)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC---------CCHHH---HHHHHHH
T ss_pred eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCC---------CCHHH---HHHHHHH
Confidence 44556667788899999999764 467788899999999999998751 11111 1222222
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .+.|++|++||+|+.... . ... ...|....+ .++++||++|.||.++|+.
T Consensus 107 ~~---~~~p~ilv~NK~D~~~~~-~-~~~------------------~~~~~~lg~~~~~~iSA~~g~gv~~L~~~ 159 (439)
T 1mky_A 107 RK---STVDTILVANKAENLREF-E-REV------------------KPELYSLGFGEPIPVSAEHNINLDTMLET 159 (439)
T ss_dssp HH---HTCCEEEEEESCCSHHHH-H-HHT------------------HHHHGGGSSCSCEECBTTTTBSHHHHHHH
T ss_pred HH---cCCCEEEEEeCCCCcccc-H-HHH------------------HHHHHhcCCCCEEEEeccCCCCHHHHHHH
Confidence 21 268999999999986431 0 001 001111222 3678999999999999964
No 141
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.05 E-value=1.4e-10 Score=107.65 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|+++....+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++-.. | .+.+....+.+.+.....
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~---e-~sf~~~~qt~e~l~~~~~-- 178 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF---E-AGFERGGQTREHAVLART-- 178 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHH---H-HTTSTTCCHHHHHHHHHH--
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCcc---c-cccCCCCcHHHHHHHHHH--
Confidence 4567777767777788899999999999999999999999999999999986100 0 000000122233322221
Q ss_pred CCCCCe-EEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHH--hh-hccceeecccccccceeeeeeh
Q psy6623 166 WFTDTS-IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQES--LK-LFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 166 ~~~~~p-iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~--f~-~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++| ++|++||+|+.........+... ..+ ..++... +. ...+.++++||++|.||.++|+
T Consensus 179 --~~vp~iivviNK~Dl~~~~~~~~~~~~i--------~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 179 --QGINHLVVVINKMDEPSVQWSEERYKEC--------VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp --TTCSSEEEEEECTTSTTCSSCHHHHHHH--------HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred --cCCCEEEEEEECccCCCccccHHHHHHH--------HHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 2566 99999999985310000000000 000 2222221 11 1246788999999999999884
No 142
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.04 E-value=1.2e-10 Score=108.60 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=76.3
Q ss_pred EeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEe
Q psy6623 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFL 176 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~ 176 (262)
+..++..+++|||+|++.|...|..++..++++|+|+|.++- .+.++.+.+..... .++|+++++
T Consensus 46 v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-----------~~~qT~e~l~~~~~----~~vPiIVvi 110 (501)
T 1zo1_I 46 VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-----------VMPQTIEAIQHAKA----AQVPVVVAV 110 (501)
T ss_dssp CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-----------SCTTTHHHHHHHHH----TTCCEEEEE
T ss_pred EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-----------ccHHHHHHHHHHHh----cCceEEEEE
Confidence 444667899999999999999999999999999999998761 11222333333221 368999999
Q ss_pred eCCchhhhhhc--cCCCc--ccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 177 NKKDLFEEKIK--KSPLT--ICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 177 NK~Dl~~~kl~--~~~l~--~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
||+|+...... ...+. ..+|+..| ..+.++++||++|.||.++|+.
T Consensus 111 NKiDl~~~~~~~v~~~l~~~~~~~~~~~---------------~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 111 NKIDKPEADPDRVKNELSQYGILPEEWG---------------GESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp ECSSSSTTCCCCTTCCCCCCCCCTTCCS---------------SSCEEEECCTTTCTTCTTHHHH
T ss_pred EeccccccCHHHHHHHHHHhhhhHHHhC---------------CCccEEEEeeeeccCcchhhhh
Confidence 99999752111 11111 12222111 2356889999999999999964
No 143
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.03 E-value=1.2e-10 Score=109.43 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+++|||+|++.+...+..+++.++++|+|+|.++ ..+..+.+.+..+.. .++|++|++||+
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKi 114 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKC 114 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence 45689999999999999999999999999999999986 344556666655543 368999999999
Q ss_pred chhhhhhccC--CCcc--cCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKS--PLTI--CFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~--~l~~--~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+........ .+.. .+++..| ..+.++++||++|.||.++|+.
T Consensus 115 Dl~~~~~~~v~~~l~~~~~~~e~~~---------------~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 115 DKAEADPEKVKKELLAYDVVCEDYG---------------GDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp GGTTTSCCSSSSHHHHTTSCCCCSS---------------SSEEECCCCSSSSCSSHHHHHH
T ss_pred cccccchHHHHHHHHhhhhhHHhcC---------------CCceEEEEECCCCCCchhHHHH
Confidence 9975321110 0000 0011001 2356889999999999999964
No 144
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.03 E-value=3.1e-10 Score=101.21 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=80.7
Q ss_pred EEeeec-cceeeeecCCcc----ccchhhhcccc---CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC-CC
Q psy6623 96 HFSFKN-LNFKLFDVGGQR----SERKKWIHCFE---DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-KW 166 (262)
Q Consensus 96 ~~~~~~-~~~~i~D~~Gq~----~~r~~w~~~f~---~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~-~~ 166 (262)
.+.+.+ ..+.+||++|+. ..+.++..|++ .++++|+|+|+++.+ ..+.+.+...+..++... +.
T Consensus 199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~ 271 (342)
T 1lnz_A 199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLR 271 (342)
T ss_dssp EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSS
T ss_pred EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhh
Confidence 355554 789999999964 34445566655 499999999998732 124455555555555543 23
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhccC
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 246 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~~ 246 (262)
+.+.|++|++||+|+..++-. .+-+.+.+.. .+.++++||++++||+++|. +|.+.+..
T Consensus 272 l~~~p~ilV~NK~Dl~~~~e~------------------~~~l~~~l~~-~~~v~~iSA~tg~gi~eL~~--~l~~~l~~ 330 (342)
T 1lnz_A 272 LTERPQIIVANKMDMPEAAEN------------------LEAFKEKLTD-DYPVFPISAVTREGLRELLF--EVANQLEN 330 (342)
T ss_dssp TTTSCBCBEEECTTSTTHHHH------------------HHHHHHHCCS-CCCBCCCSSCCSSTTHHHHH--HHHHHHTS
T ss_pred hcCCCEEEEEECccCCCCHHH------------------HHHHHHHhhc-CCCEEEEECCCCcCHHHHHH--HHHHHHhh
Confidence 568999999999999753200 1122222221 15578999999999999995 45555554
Q ss_pred C
Q psy6623 247 S 247 (262)
Q Consensus 247 ~ 247 (262)
.
T Consensus 331 ~ 331 (342)
T 1lnz_A 331 T 331 (342)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.03 E-value=5.9e-10 Score=97.71 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=74.1
Q ss_pred eeeccceeeeecCCccc--------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCC
Q psy6623 98 SFKNLNFKLFDVGGQRS--------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169 (262)
Q Consensus 98 ~~~~~~~~i~D~~Gq~~--------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~ 169 (262)
..++.++.+|||+|+.. +...+..++++++++|+|+|.++ .-... ..++...+... ..+
T Consensus 51 ~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~----------~~~~~--~~~i~~~l~~~-~~~ 117 (301)
T 1wf3_A 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------PPTPE--DELVARALKPL-VGK 117 (301)
T ss_dssp EETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------CCCHH--HHHHHHHHGGG-TTT
T ss_pred EeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCC----------CCChH--HHHHHHHHHhh-cCC
Confidence 44678899999999976 45566778999999999999986 11111 12332223221 247
Q ss_pred CeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 170 ~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
+|+++++||+|+..++-. + ...+... .....++++||++|.||.++|+ ++...+.
T Consensus 118 ~p~ilV~NK~Dl~~~~~~---~--------------~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~--~l~~~l~ 172 (301)
T 1wf3_A 118 VPILLVGNKLDAAKYPEE---A--------------MKAYHEL--LPEAEPRMLSALDERQVAELKA--DLLALMP 172 (301)
T ss_dssp SCEEEEEECGGGCSSHHH---H--------------HHHHHHT--STTSEEEECCTTCHHHHHHHHH--HHHTTCC
T ss_pred CCEEEEEECcccCCchHH---H--------------HHHHHHh--cCcCcEEEEeCCCCCCHHHHHH--HHHHhcc
Confidence 899999999998642210 0 0111111 0112467899999999999994 5655554
No 146
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.02 E-value=4.1e-10 Score=103.55 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=76.2
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHH-------HHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQ-------ESLKLFD 159 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~-------e~~~~~~ 159 (262)
..|+.+....+..++..+.+|||+|++.+.+.+..+++.++++|+|+|.++ .+++ +..+.+.
T Consensus 69 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~ 137 (435)
T 1jny_A 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHII 137 (435)
T ss_dssp --------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHH
T ss_pred CceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHH
Confidence 455555555677778899999999999999999999999999999999986 2222 2222222
Q ss_pred HHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeee
Q psy6623 160 SICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFL 234 (262)
Q Consensus 160 ~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~ 234 (262)
.... ..-.|++|++||+|+.........+.. ..+.+.+.+.. ..+.++++||++|+||.++
T Consensus 138 ~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 138 LAKT---MGLDQLIVAVNKMDLTEPPYDEKRYKE-----------IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHH---TTCTTCEEEEECGGGSSSTTCHHHHHH-----------HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHH---cCCCeEEEEEEcccCCCccccHHHHHH-----------HHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 2211 122468999999998641000000000 01122222222 1367889999999999988
Q ss_pred eh
Q psy6623 235 NK 236 (262)
Q Consensus 235 f~ 236 (262)
+.
T Consensus 204 ~~ 205 (435)
T 1jny_A 204 SE 205 (435)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.02 E-value=1.3e-10 Score=106.87 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=78.0
Q ss_pred EEEEeeeccceeeeecCCc----------cccchhhh-ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 94 EVHFSFKNLNFKLFDVGGQ----------RSERKKWI-HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq----------~~~r~~w~-~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
...+.+++..+++|||+|+ +.++.++. .++++++++|+|+|+++ ..+.++ ..++..+.
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~~~-~~~~~~~~ 283 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIEQD-KRIAGYAH 283 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHHHHH
T ss_pred EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcHHH-HHHHHHHH
Confidence 3456667778999999998 55555554 48899999999999987 333333 45555554
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. .++|++|++||+|+..++- .. ..+ .+.+...+.. ....++++||++|.||.++|+.
T Consensus 284 ~----~~~~iiiv~NK~Dl~~~~~----~~----------~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~ 342 (436)
T 2hjg_A 284 E----AGKAVVIVVNKWDAVDKDE----ST----------MKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA 342 (436)
T ss_dssp H----TTCEEEEEEECGGGSCCCT----TH----------HHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred H----cCCcEEEEEECccCCCcch----HH----------HHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHH
Confidence 3 3689999999999864210 00 000 2233333322 3456789999999999999974
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.00 E-value=4.1e-10 Score=103.72 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=80.9
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..|+.+....+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++-.. |. ..+...+..+.+..+..
T Consensus 80 GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~--- 152 (439)
T 3j2k_7 80 GKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT--- 152 (439)
T ss_pred CceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH---
Confidence 345555666677788899999999999999999999999999999999986110 00 00001123333332221
Q ss_pred CCCCe-EEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh------ccceeecccccccceeeeeeh
Q psy6623 167 FTDTS-IILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL------FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 167 ~~~~p-iil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~------~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.++| ++|++||+|+............ ..+.+...+.. ..+.++++||++|.||.++.+
T Consensus 153 -~~v~~iIvviNK~Dl~~~~~~~~~~~~-----------i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 -AGVKHLIVLINKMDDPTVNWSNERYEE-----------CKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred -cCCCeEEEEeecCCCcccchHHHHHHH-----------HHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2455 9999999998531000000000 01111111111 146688999999999999775
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.98 E-value=6e-10 Score=106.18 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=80.3
Q ss_pred ccceeEEEEeee-----ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 89 TTGIVEVHFSFK-----NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 89 T~Gi~~~~~~~~-----~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
|+......+.+. +..+++|||+|+..+...+..+++.++++|+|+|.++ .... +....|.....
T Consensus 53 Ti~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~----------gv~~-qt~~~~~~~~~ 121 (599)
T 3cb4_D 53 TIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ----------GVEA-QTLANCYTAME 121 (599)
T ss_dssp ----CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTT----------CCCT-HHHHHHHHHHH
T ss_pred eeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC----------CCCH-HHHHHHHHHHH
Confidence 333333445554 3789999999999999999999999999999999987 2222 23333433332
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhh
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEK 243 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~ 243 (262)
.++|+++++||+|+....... ..+-+.+.+.-....++++||++|.||.++|+ ++...
T Consensus 122 ----~~ipiIvViNKiDl~~a~~~~----------------v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~--~I~~~ 179 (599)
T 3cb4_D 122 ----MDLEVVPVLNKIDLPAADPER----------------VAEEIEDIVGIDATDAVRCSAKTGVGVQDVLE--RLVRD 179 (599)
T ss_dssp ----TTCEEEEEEECTTSTTCCHHH----------------HHHHHHHHTCCCCTTCEEECTTTCTTHHHHHH--HHHHH
T ss_pred ----CCCCEEEeeeccCcccccHHH----------------HHHHHHHHhCCCcceEEEeecccCCCchhHHH--HHhhc
Confidence 368999999999996521000 01222332221222367899999999999995 34444
Q ss_pred cc
Q psy6623 244 IK 245 (262)
Q Consensus 244 i~ 245 (262)
+.
T Consensus 180 lp 181 (599)
T 3cb4_D 180 IP 181 (599)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.98 E-value=1e-09 Score=103.30 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=65.1
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+......+.+++..+++|||+|+..++..+..+++.++++|+|+|.++ ........+|..+..
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~~---- 132 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCRL---- 132 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHHT----
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHHH----
Confidence 45555667778888999999999999999999999999999999999987 223444556655543
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.++|+++|+||+|+..
T Consensus 133 ~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 133 RHTPIMTFINKMDRDT 148 (528)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEeCCCCcc
Confidence 3689999999999853
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.97 E-value=8.1e-10 Score=102.93 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=80.2
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+.+....+..++..+.+|||+|++.+.+.+..++++++++|+|+|.++-.. +. ..+-.....+.+..... .
T Consensus 97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~~-~~~~~~qt~e~~~~~~~---~ 169 (483)
T 3p26_A 97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---ES-GFDLDGQTKEHMLLASS---L 169 (483)
T ss_dssp SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHHHHHH---T
T ss_pred cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---cc-ccchhhhHHHHHHHHHH---c
Confidence 35555666677788999999999999999999999999999999999987110 00 00011222222222211 2
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh-----ccceeecccccccceeeeeeh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL-----FDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f~ 236 (262)
...|++|++||+|+....-.. . .+ .+.+...+.. ..+.++++||++|+||.++..
T Consensus 170 ~~~~iIvviNK~Dl~~~~~~~--~------------~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 170 GIHNLIIAMNKMDNVDWSQQR--F------------EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp TCCCEEEEEECGGGGTTCHHH--H------------HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred CCCcEEEEEECcCcccchHHH--H------------HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 235799999999986511000 0 00 1222222211 256788999999999998753
No 152
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.96 E-value=8.9e-10 Score=101.99 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=78.7
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccH---HHHHHHHHHHHhC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRM---QESLKLFDSICNN 164 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l---~e~~~~~~~i~~~ 164 (262)
.|+.+....+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++-.. ..++ .+..+.+.....
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~~sf~~~~qt~~~~~~~~~- 142 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF-------EAGISKDGQTREHALLAFT- 142 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHH-------HHHTCTTSHHHHHHHHHHH-
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCcc-------ccccCcchhHHHHHHHHHH-
Confidence 45555556667778899999999999999999999999999999999986100 0001 033333332221
Q ss_pred CCCCCCe-EEEEeeCCchhh---hhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeee
Q psy6623 165 KWFTDTS-IILFLNKKDLFE---EKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 165 ~~~~~~p-iil~~NK~Dl~~---~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f 235 (262)
.++| ++|++||+|+.. +++.. + .+.+...+.. ..+.++++||++|.||.+..
T Consensus 143 ---~~v~~iivviNK~Dl~~~~~~~~~~--i--------------~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 143 ---LGVRQLIVAVNKMDSVKWDESRFQE--I--------------VKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp ---TTCCEEEEEEECGGGGTTCHHHHHH--H--------------HHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred ---cCCCeEEEEEEccccccCCHHHHHH--H--------------HHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 2454 999999999963 11100 0 1112111111 23678899999999998765
Q ss_pred h
Q psy6623 236 K 236 (262)
Q Consensus 236 ~ 236 (262)
.
T Consensus 204 ~ 204 (458)
T 1f60_A 204 T 204 (458)
T ss_dssp S
T ss_pred c
Confidence 4
No 153
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.96 E-value=2.3e-09 Score=96.05 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=79.9
Q ss_pred cccceeEEEEeeeccceeeeecCCccccc---------hhhhccccCCCEEEEeeeccccccccccCcccc--cHHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSER---------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN--RMQESLK 156 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r---------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~--~l~e~~~ 156 (262)
.|.++....+..++..+.+|||+|+.... .....+...++++|+|+|+++ .. .+.+...
T Consensus 200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~----------~~~~~~~~~~~ 269 (357)
T 2e87_A 200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HCGFPLEEQIH 269 (357)
T ss_dssp CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC----------TTSSCHHHHHH
T ss_pred eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc----------cccCCHHHHHH
Confidence 34455555555567889999999985432 122245567999999999987 33 5566667
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
++..+.... .+.|+++++||+|+....-. .-+.+......+.++++||++|+||+++|+
T Consensus 270 ~~~~i~~~~--~~~piilV~NK~Dl~~~~~~-------------------~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 270 LFEEVHGEF--KDLPFLVVINKIDVADEENI-------------------KRLEKFVKEKGLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp HHHHHHHHT--TTSCEEEEECCTTTCCHHHH-------------------HHHHHHHHHTTCCCEECBTTTTBTHHHHHH
T ss_pred HHHHHHHhc--CCCCEEEEEECcccCChHHH-------------------HHHHHHHHhcCCCeEEEeCCCCcCHHHHHH
Confidence 777666421 27899999999998653210 011111112346678999999999999996
Q ss_pred h
Q psy6623 237 K 237 (262)
Q Consensus 237 ~ 237 (262)
.
T Consensus 329 ~ 329 (357)
T 2e87_A 329 E 329 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.96 E-value=1.1e-09 Score=104.18 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=75.9
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+++|||+|+..|...+..+++.++++|+|+|.++ ... .+....|..... .++|+++++||+|+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~-~qt~~~~~~a~~----~~ipiIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIE-AQTVANFWKAVE----QDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCC-HHHHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH----CCCCEEEEEeccCc
Confidence 789999999999999999999999999999999987 222 233444444433 36899999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....... . .+-+.+.+.-....++++||++|.||.++|+ ++...+
T Consensus 138 ~~a~~~~--v--------------~~el~~~lg~~~~~vi~vSAktg~GI~~Lle--~I~~~l 182 (600)
T 2ywe_A 138 PSADVDR--V--------------KKQIEEVLGLDPEEAILASAKEGIGIEEILE--AIVNRI 182 (600)
T ss_dssp TTCCHHH--H--------------HHHHHHTSCCCGGGCEECBTTTTBSHHHHHH--HHHHHS
T ss_pred cccCHHH--H--------------HHHHHHhhCCCcccEEEEEeecCCCchHHHH--HHHHhc
Confidence 6521100 0 1122222211122367899999999999995 344444
No 155
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.96 E-value=6e-10 Score=101.45 Aligned_cols=113 Identities=16% Similarity=0.040 Sum_probs=78.0
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+|||+|++.+.+.+..++..++++|+|+|.++ ..++.+..+++..+... ...|+++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~----------~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGII---GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTS----------CSSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----------CCCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence 678999999999999999999999999999999987 33345555555433221 23589999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....-.... .+.+.+.+.. ..+.++++||++|+||.++++ .|...+
T Consensus 142 ~~~~~~~~~---------------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~--~l~~~l 190 (403)
T 3sjy_A 142 VSKEEALSQ---------------YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIE--GIEEYI 190 (403)
T ss_dssp SCHHHHHHH---------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHH--HHHHHS
T ss_pred cchHHHHHH---------------HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHH--HHHHhC
Confidence 643210000 1122222211 346788999999999999995 444433
No 156
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.95 E-value=1e-09 Score=102.14 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=74.4
Q ss_pred ceeEEEEeeeccceeeeecCCcc-ccc--------hhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 91 GIVEVHFSFKNLNFKLFDVGGQR-SER--------KKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 91 Gi~~~~~~~~~~~~~i~D~~Gq~-~~r--------~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
.+....+.+++..+.+|||+|++ ... ..+..+++.++++|+|+|+++ ..+..+ .++++.
T Consensus 280 d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~s~~~-~~il~~- 347 (482)
T 1xzp_A 280 DVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PLDEED-RKILER- 347 (482)
T ss_dssp CSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CCCHHH-HHHHHH-
T ss_pred eeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC----------CCCHHH-HHHHHH-
Confidence 34455667778899999999998 543 234568899999999999987 333332 334433
Q ss_pred HhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 162 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 162 ~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+ .+.|++|++||+|+..+ . . .+-+.+.+ ...+.++++||++|+||+++|+.
T Consensus 348 l-----~~~piivV~NK~DL~~~-~---~---------------~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~ 398 (482)
T 1xzp_A 348 I-----KNKRYLVVINKVDVVEK-I---N---------------EEEIKNKL-GTDRHMVKISALKGEGLEKLEES 398 (482)
T ss_dssp H-----TTSSEEEEEEECSSCCC-C---C---------------HHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHH
T ss_pred h-----cCCCEEEEEECcccccc-c---C---------------HHHHHHHh-cCCCcEEEEECCCCCCHHHHHHH
Confidence 2 36899999999998542 1 0 01111111 12245788999999999999964
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.93 E-value=6.9e-10 Score=100.05 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=84.1
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+..|+++....+..++..+.+|||+|++.|.+....+++.++++|+|+| ++ ..+.+..+++..+..
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~- 109 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL- 109 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH-
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH-
Confidence 45678888888888888999999999999998888889999999999999 54 334444444443332
Q ss_pred CCCCCCeE-EEEee-CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeec--ccccc---cceeeee
Q psy6623 165 KWFTDTSI-ILFLN-KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNN--KWFTD---TSIILFL 234 (262)
Q Consensus 165 ~~~~~~pi-il~~N-K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~--tsA~d---~~~I~~~ 234 (262)
.++|. ++++| |+|+ .+..... . .+-+.+.+.. ..+.+++ +||++ ++||.++
T Consensus 110 ---~~i~~~ivvvNNK~Dl-~~~~~~~-~--------------~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 110 ---LGFKHGIIALTRSDST-HMHAIDE-L--------------KAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp ---TTCCEEEEEECCGGGS-CHHHHHH-H--------------HHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred ---cCCCeEEEEEEeccCC-CHHHHHH-H--------------HHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 24666 88888 9998 4321000 0 0111221111 2356788 99999 9999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
++.
T Consensus 171 ~~~ 173 (370)
T 2elf_A 171 KAR 173 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 158
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.92 E-value=1.4e-09 Score=99.07 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=68.6
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+||++|++.+.+.+......++++|+|+|.++ .-...++.+.+..+.. +...|++|++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE----------PCPQPQTKEHLMALEI---LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC----------CCCCchhHHHHHHHHH---cCCCeEEEEEEccCC
Confidence 579999999999999888888889999999999986 1112333333332211 223589999999998
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....- ... . .+.+.+.+.. ..+.++++||++|+||.++++ +|...+
T Consensus 148 ~~~~~----~~~---------~--~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~--~l~~~i 196 (408)
T 1s0u_A 148 VDEKQ----AEE---------N--YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLK--AIQDFI 196 (408)
T ss_dssp SCTTT----TTT---------H--HHHHHHHHTTSTTTTCCEEEC------CHHHHHH--HHHHHS
T ss_pred CCHHH----HHH---------H--HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHH--HHHHhC
Confidence 65310 000 0 1222222221 346788999999999999995 455444
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.91 E-value=5.1e-10 Score=104.28 Aligned_cols=120 Identities=16% Similarity=0.081 Sum_probs=79.1
Q ss_pred ecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
..|+.+....+.+++..+.+||++|++.+.+.+..++..++++|+|+|.++ ....+..+.+..+..
T Consensus 58 GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~e~l~~~~~--- 123 (482)
T 1wb1_A 58 GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE-----------GPKTQTGEHMLILDH--- 123 (482)
T ss_dssp ------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT-----------CSCHHHHHHHHHHHH---
T ss_pred ccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC-----------CccHHHHHHHHHHHH---
Confidence 346665556677788899999999999999999999999999999999886 122333333332221
Q ss_pred CCCCeEEEEeeCCchhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh----ccceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL----FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~----~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++++||+|+..+. .... .+.+.+.+.. ..+.++++||++|+||.++++.
T Consensus 124 -~~ip~IvviNK~Dl~~~~~~~~~----------------~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 124 -FNIPIIVVITKSDNAGTEEIKRT----------------EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp -TTCCBCEEEECTTSSCHHHHHHH----------------HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred -cCCCEEEEEECCCcccchhHHHH----------------HHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHH
Confidence 358889999999986421 1000 1111111111 1466889999999999999964
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.89 E-value=2.3e-09 Score=97.60 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=60.0
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+.+..+++..+.. .
T Consensus 62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~~~l~~~~~----~ 126 (405)
T 2c78_A 62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----V 126 (405)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHH----T
T ss_pred CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence 4444444555567899999999999999999999999999999999986 223444555544432 2
Q ss_pred CCe-EEEEeeCCchh
Q psy6623 169 DTS-IILFLNKKDLF 182 (262)
Q Consensus 169 ~~p-iil~~NK~Dl~ 182 (262)
++| +++++||+|+.
T Consensus 127 ~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 127 GVPYIVVFMNKVDMV 141 (405)
T ss_dssp TCCCEEEEEECGGGC
T ss_pred CCCEEEEEEECcccc
Confidence 577 89999999986
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.89 E-value=2.1e-09 Score=97.67 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=61.0
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|++.....+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+.+..+.+..+..
T Consensus 52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~e~l~~~~~---- 116 (397)
T 1d2e_A 52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-----------GPMPQTREHLLLARQ---- 116 (397)
T ss_dssp EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----
T ss_pred cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC-----------CCCHHHHHHHHHHHH----
Confidence 45555555555567899999999999999999999999999999999986 223444455533322
Q ss_pred CCCe-EEEEeeCCchhh
Q psy6623 168 TDTS-IILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~p-iil~~NK~Dl~~ 183 (262)
.++| +++++||+|+..
T Consensus 117 ~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 117 IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp TTCCCEEEEEECGGGCS
T ss_pred cCCCeEEEEEECcccCC
Confidence 2577 789999999863
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.86 E-value=2e-09 Score=99.68 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEEEeeeccceeeeecCCccccchhhh--------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGGQRSERKKWI--------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~Gq~~~r~~w~--------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
...+.+++..+.+|||+|++.....+. .++++++++|+|+|.++ .... +...++..+
T Consensus 264 ~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~-~~~~i~~~l---- 328 (462)
T 3geh_A 264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTT-GDQEIYEQV---- 328 (462)
T ss_dssp HHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCH-HHHHHHHHH----
T ss_pred EEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCH-HHHHHHHhc----
Confidence 344566788899999999877654433 36899999999999987 2222 223344333
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhcc
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+.|+++|+||+|+....... .+.. +. ....++.+||++|+||+++|+ .+.+.+.
T Consensus 329 --~~~piivV~NK~Dl~~~~~~~-~~~~----~~----------------~~~~~i~iSAktg~Gi~eL~~--~i~~~~~ 383 (462)
T 3geh_A 329 --KHRPLILVMNKIDLVEKQLIT-SLEY----PE----------------NITQIVHTAAAQKQGIDSLET--AILEIVQ 383 (462)
T ss_dssp --TTSCEEEEEECTTSSCGGGST-TCCC----CT----------------TCCCEEEEBTTTTBSHHHHHH--HHHHHHT
T ss_pred --cCCcEEEEEECCCCCcchhhH-HHHH----hc----------------cCCcEEEEECCCCCCHHHHHH--HHHHHHh
Confidence 236999999999997643211 1111 10 123477899999999999995 4544443
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=1.4e-09 Score=100.57 Aligned_cols=108 Identities=21% Similarity=0.178 Sum_probs=70.8
Q ss_pred EEEEeeeccceeeeecCC--------ccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 94 EVHFSFKNLNFKLFDVGG--------QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 94 ~~~~~~~~~~~~i~D~~G--------q~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
.......+..+.+|||+| ++.++..+..++++++++|||+|.++ .+.....++..++..
T Consensus 63 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~- 129 (456)
T 4dcu_A 63 YSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR- 129 (456)
T ss_dssp EEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT-
T ss_pred EEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH-
Confidence 334445678999999999 88999999999999999999999764 222333344444433
Q ss_pred CCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 166 WFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|++|++||+|+...... ..+++. .| . -..+.+||++|.||.++++.
T Consensus 130 --~~~pvilV~NK~D~~~~~~~---~~e~~~--lg---------------~-~~~~~iSA~~g~gv~~L~~~ 178 (456)
T 4dcu_A 130 --TKKPVVLAVNKLDNTEMRAN---IYDFYS--LG---------------F-GEPYPISGTHGLGLGDLLDA 178 (456)
T ss_dssp --CCSCEEEEEECC------------CCSGG--GS---------------S-SSEEECCTTTCTTHHHHHHH
T ss_pred --cCCCEEEEEECccchhhhhh---HHHHHH--cC---------------C-CceEEeecccccchHHHHHH
Confidence 47899999999998653211 111100 01 0 12458999999999999964
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.5e-09 Score=102.27 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=78.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+.+....+..++..+.||||+|++.+.+.+..++++++++|+|+|.++-. .+. ...........+.... ...
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~-~~~~~~qt~e~l~~~~---~lg 304 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FES-GFDLDGQTKEHMLLAS---SLG 304 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHT-TCCTTSHHHHHHHHHH---TTT
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---ccc-cchhhhHHHHHHHHHH---HcC
Confidence 444455667778889999999999999999999999999999999998610 000 0001122222222222 123
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-----ccceeecccccccceeeeee
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-----FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~~~~~~~tsA~d~~~I~~~f 235 (262)
..|++|++||+|+....-.. +.. ..+.+...+.. ..+.++++||++|.||.++.
T Consensus 305 i~~iIVVvNKiDl~~~~~~~--~~e-----------i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 305 IHNLIIAMNKMDNVDWSQQR--FEE-----------IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CCEEEEEEECTTTTTTCHHH--HHH-----------HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred CCeEEEEEecccccchhHHH--HHH-----------HHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 34699999999986411000 000 01122222211 24678899999999999874
No 165
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.84 E-value=6.5e-09 Score=97.81 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=80.5
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+......+..++..+++|||+|++.++..+..+++.++++|+|+|.++- -......++.... .
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-----------~~~~t~~~~~~~~----~ 132 (529)
T 2h5e_A 68 ISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-----------VEDRTRKLMEVTR----L 132 (529)
T ss_dssp --CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHHT----T
T ss_pred cceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-----------chHHHHHHHHHHH----H
Confidence 444555667778889999999999999999999999999999999999861 1122333333322 2
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcch-hHHHHHHhhh--ccceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGE-RNRMQESLKL--FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~-~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.++|+++|+||+|+..... .+ .+.+.+.+.. .++.+..+||+++.||..++..
T Consensus 133 ~~ipiivviNK~Dl~~~~~-----------------~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~ 188 (529)
T 2h5e_A 133 RDTPILTFMNKLDRDIRDP-----------------MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKD 188 (529)
T ss_dssp TTCCEEEEEECTTSCCSCH-----------------HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTT
T ss_pred cCCCEEEEEcCcCCccccH-----------------HHHHHHHHHHhCCCccceecceecccCcceeeehhhh
Confidence 4689999999999864210 01 3334444433 1233445899999999888753
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.84 E-value=8.4e-09 Score=88.88 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred ecccceeEEEEee--ec--cceeeeecCCc-------cccchhh-------hccccC-------------CCEEEEeeec
Q psy6623 87 VKTTGIVEVHFSF--KN--LNFKLFDVGGQ-------RSERKKW-------IHCFED-------------VTAIIFCVAM 135 (262)
Q Consensus 87 ~pT~Gi~~~~~~~--~~--~~~~i~D~~Gq-------~~~r~~w-------~~~f~~-------------~~~iIfv~dl 135 (262)
.+|+++......+ ++ +++.+|||+|+ +.++.++ ..|++. +|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 5777776655554 33 58999999998 3344444 444443 7899999977
Q ss_pred cccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh
Q psy6623 136 SEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL 215 (262)
Q Consensus 136 s~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~ 215 (262)
+. .........+++.+.. ++|+++|+||+|+....- +... .+.+.+.+..
T Consensus 126 ~~----------~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e----~~~~-----------~~~i~~~l~~ 175 (274)
T 3t5d_A 126 SG----------HGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEE----CQQF-----------KKQIMKEIQE 175 (274)
T ss_dssp CC----------SSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHH----HHHH-----------HHHHHHHHHH
T ss_pred CC----------CCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHH----HHHH-----------HHHHHHHHHH
Confidence 65 1222333444554432 689999999999863210 0000 2334444545
Q ss_pred ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 216 FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 216 ~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
..+.++.+||++++++.++++ .|...+
T Consensus 176 ~~i~v~~~sa~~~~~~~~l~~--~l~~~~ 202 (274)
T 3t5d_A 176 HKIKIYEFPETDDEEENKLVK--KIKDRL 202 (274)
T ss_dssp TTCCCCCC-----------CH--HHHHTC
T ss_pred cCCeEEcCCCCCChhHHHHHH--HHhcCC
Confidence 667788899999999999985 344443
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.80 E-value=5.3e-09 Score=94.03 Aligned_cols=129 Identities=14% Similarity=0.015 Sum_probs=78.4
Q ss_pred ecccceeEEEEeeeccceeeeecCCc---------cccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHH
Q psy6623 87 VKTTGIVEVHFSFKNLNFKLFDVGGQ---------RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLK 156 (262)
Q Consensus 87 ~pT~Gi~~~~~~~~~~~~~i~D~~Gq---------~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~ 156 (262)
.+|.+.....+.+++..+.+|||+|+ +.+++.+. .+..++++++|+|+++ .. ...+...
T Consensus 211 ~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~----------~~~~~~~~~~ 279 (364)
T 2qtf_A 211 FTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTF----------SENLLIETLQ 279 (364)
T ss_dssp ---CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTS----------CHHHHHHHHH
T ss_pred ccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CcchHHHHHH
Confidence 35666666777787888999999997 23444444 5789999999999987 21 1233333
Q ss_pred HHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHH---HHHhhhccceeecccccccceeee
Q psy6623 157 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRM---QESLKLFDSICNNKWFTDTSIILF 233 (262)
Q Consensus 157 ~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i---~~~f~~~~~~~~~tsA~d~~~I~~ 233 (262)
.+..++......+.|+++|+||+|+....... ....+ ...+......+.++||++|+|+.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~----------------~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYK----------------KLDLVEKLSKELYSPIFDVIPISALKRTNLEL 343 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHH----------------HHHHHHHHHHHHCSCEEEEEECBTTTTBSHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHH----------------HHHHHHHHHHHhcCCCCcEEEEECCCCcCHHH
Confidence 33333332223578999999999986421000 00111 111101123467899999999999
Q ss_pred eehhhHHHhhc
Q psy6623 234 LNKKDLFEEKI 244 (262)
Q Consensus 234 ~f~~~lL~~~i 244 (262)
+++ ++.+.+
T Consensus 344 L~~--~I~~~l 352 (364)
T 2qtf_A 344 LRD--KIYQLA 352 (364)
T ss_dssp HHH--HHHHHH
T ss_pred HHH--HHHHHh
Confidence 995 444443
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.80 E-value=6.1e-09 Score=94.94 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=73.3
Q ss_pred cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCch
Q psy6623 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl 181 (262)
..+.+||++|++.+.+.+......++++|+|+|.++ .-...++.+.+..+.. +...|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE----------PCPRPQTREHLMALQI---IGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---HTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCC----------CCCChhHHHHHHHHHH---cCCCcEEEEEECccC
Confidence 579999999999998888888888999999999986 1112233333322211 123589999999999
Q ss_pred hhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh---ccceeecccccccceeeeeehhhHHHhhc
Q psy6623 182 FEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL---FDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 182 ~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~---~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
....-.... .+.+.+.+.. ..+.++++||++|.||.++++ +|...+
T Consensus 150 ~~~~~~~~~---------------~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~--~l~~~~ 198 (410)
T 1kk1_A 150 VDKEKALEN---------------YRQIKEFIEGTVAENAPIIPISALHGANIDVLVK--AIEDFI 198 (410)
T ss_dssp SCHHHHHHH---------------HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHH--HHHHHS
T ss_pred CCHHHHHHH---------------HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHH--HHHHhC
Confidence 653210000 1122222221 346788999999999999995 454443
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.75 E-value=7.2e-09 Score=98.71 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=52.4
Q ss_pred ceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 103 NFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 103 ~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
.+++|||+|++.|...+..+++.++++|+|+|.++ .-..++...+..+.. .++|++|++||+|+.
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~-----------Gv~~qT~e~l~~l~~----~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALNILRM----YRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-----------CCCHHHHHHHHHHHH----TTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-----------CccHhHHHHHHHHHH----cCCeEEEEecccccc
Confidence 48999999999999999999999999999999986 122334444443332 368999999999996
Q ss_pred h
Q psy6623 183 E 183 (262)
Q Consensus 183 ~ 183 (262)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 4
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.73 E-value=1.4e-08 Score=87.90 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred ccceeeeecCCcc-------------ccchhhhccccCCCEEE-EeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 101 NLNFKLFDVGGQR-------------SERKKWIHCFEDVTAII-FCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 101 ~~~~~i~D~~Gq~-------------~~r~~w~~~f~~~~~iI-fv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
...+.+|||+|+. .++.++..|+++++++| +|+|.++ .-...+...+++.+..
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~----------~~~~~~~~~~~~~~~~--- 190 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP--- 190 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS----------CGGGCHHHHHHHHHCT---
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc----------chhhhHHHHHHHHhCC---
Confidence 4789999999964 45677888999998777 7889875 1122233334444321
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--cc-ceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+..+.- .. .+.+...+.. .. ..++.+||++|.||.++|+.
T Consensus 191 -~~~~~i~V~NK~Dl~~~~~---~~--------------~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~ 246 (299)
T 2aka_B 191 -QGQRTIGVITKLDLMDEGT---DA--------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 246 (299)
T ss_dssp -TCSSEEEEEECGGGSCTTC---CC--------------HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHH
T ss_pred -CCCeEEEEEEccccCCCCc---hH--------------HHHHhCCcCcCCCCcEEEECCChhhccccccHHHH
Confidence 3689999999999965321 00 1111111100 11 24678999999999999964
No 171
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.68 E-value=2.8e-08 Score=84.61 Aligned_cols=130 Identities=10% Similarity=0.019 Sum_probs=72.7
Q ss_pred ccceeEEEEeeeccceeeeecCCccccch-----------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERK-----------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~-----------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
|.......+..++..+.+|||+|+..... ....++++++++|+|+|++++. ........+
T Consensus 58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~ 128 (260)
T 2xtp_A 58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQR 128 (260)
T ss_dssp CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHH
T ss_pred eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHH
Confidence 34444455666788899999999865432 2234789999999999998621 222334455
Q ss_pred HHHHHhCCCCCCCeEEEEee-CCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhcc--ceeecccccccceeeee
Q psy6623 158 FDSICNNKWFTDTSIILFLN-KKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFD--SICNNKWFTDTSIILFL 234 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~N-K~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~--~~~~~tsA~d~~~I~~~ 234 (262)
+..+... .. ..|+++++| |+|+....+. .+..+. ...+..-+...+..+- +..+.+||++|.||.++
T Consensus 129 l~~~~~~-~~-~~~~i~vv~nK~Dl~~~~~~-----~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 129 VKEIFGE-DA-MGHTIVLFTHKEDLNGGSLM-----DYMHDS---DNKALSKLVAACGGRICAFNNRAEGSNQDDQVKEL 198 (260)
T ss_dssp HHHHHCG-GG-GGGEEEEEECGGGGTTCCHH-----HHHHHC---CCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHhCc-hh-hccEEEEEEcccccCCccHH-----HHHHhc---chHHHHHHHHHhCCeEEEecCcccccccHHHHHHH
Confidence 5555432 11 245555555 9998642111 100000 0000111122222211 22278999999999999
Q ss_pred ehh
Q psy6623 235 NKK 237 (262)
Q Consensus 235 f~~ 237 (262)
|+.
T Consensus 199 ~~~ 201 (260)
T 2xtp_A 199 MDC 201 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 953
No 172
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.67 E-value=2.2e-08 Score=84.24 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=58.8
Q ss_pred ccceeEEEEeeeccceeeeecCC-----------ccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGG-----------QRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKL 157 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~G-----------q~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~ 157 (262)
|.......+.+++..+.+|||+| ++.+++.+..++++++++|+|+|++.++ .....++.+
T Consensus 65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~ 135 (239)
T 3lxx_A 65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEK 135 (239)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHH
T ss_pred eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHH
Confidence 34445556677788999999999 5567777788889999999999998642 222344444
Q ss_pred HHHHHhCCCCCCCeEEEEeeCCchhhh
Q psy6623 158 FDSICNNKWFTDTSIILFLNKKDLFEE 184 (262)
Q Consensus 158 ~~~i~~~~~~~~~piil~~NK~Dl~~~ 184 (262)
+...+... ...|++||+||+|+...
T Consensus 136 ~~~~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 136 ILKMFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred HHHHhhhh--ccceEEEEEeCCccCCc
Confidence 44443321 13589999999998653
No 173
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.66 E-value=3.5e-08 Score=90.71 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=68.8
Q ss_pred EEEeeeccceeeeecCCccccchhh------------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHH
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKW------------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSIC 162 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w------------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~ 162 (262)
..+.+++..+.+|||+|+++.+... ..+++.++++++|+|.++ ..+..+ ..+.. .+
T Consensus 221 ~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~-~l 288 (439)
T 1mky_A 221 DEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAG-LM 288 (439)
T ss_dssp EEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHH-HH
T ss_pred EEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHH-HH
Confidence 4456677789999999986554332 236678999999999886 222222 22222 22
Q ss_pred hCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-ccceeecccccccceeeeeehh
Q psy6623 163 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 163 ~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.. .++|+++++||+|+..++-.. .... .+.+...+.. ....++++||++|.||.++|+.
T Consensus 289 ~~---~~~~~ilv~NK~Dl~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 348 (439)
T 1mky_A 289 ER---RGRASVVVFNKWDLVVHREKR--YDEF-----------TKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA 348 (439)
T ss_dssp HH---TTCEEEEEEECGGGSTTGGGC--HHHH-----------HHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHH
T ss_pred HH---cCCCEEEEEECccCCCchhhH--HHHH-----------HHHHHHHhccCCCCcEEEEECCCCCCHHHHHHH
Confidence 21 368999999999996532100 0000 1223333322 2345789999999999999975
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.66 E-value=6.1e-09 Score=99.29 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred cccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
.|+.+....+..++..+.||||+|++.|.+.+..++..++++|+|+|.++-. .+. ...........+..+..
T Consensus 241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~-gi~~~~qt~e~l~~~~~---- 312 (592)
T 3mca_A 241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FER-GFLENGQTREHAYLLRA---- 312 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SST-TSCSCSSHHHHHHHHHH----
T ss_pred eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---ccc-ccccchHHHHHHHHHHH----
Confidence 3555555666667889999999999999999999999999999999998610 000 00001222222222221
Q ss_pred CCCe-EEEEeeCCchhhh---hhccCCCcccCCCCCCCCcchhHHHHHHh-hh-----ccceeecccccccceeeeee
Q psy6623 168 TDTS-IILFLNKKDLFEE---KIKKSPLTICFPEYAGKRPGERNRMQESL-KL-----FDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 168 ~~~p-iil~~NK~Dl~~~---kl~~~~l~~~fp~~~g~~~~~~~~i~~~f-~~-----~~~~~~~tsA~d~~~I~~~f 235 (262)
.++| ++|++||+|+... ++.. + .+.+...+ .. ..+.++++||++|.||.+..
T Consensus 313 lgip~iIvviNKiDl~~~~~~~~~~--i--------------~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~ 374 (592)
T 3mca_A 313 LGISEIVVSVNKLDLMSWSEDRFQE--I--------------KNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD 374 (592)
T ss_dssp SSCCCEEEEEECGGGGTTCHHHHHH--H--------------HHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCC
T ss_pred cCCCeEEEEEeccccccccHHHHHH--H--------------HHHHHHHHHHhhCCCccceEEEEEecccCccccccc
Confidence 1354 9999999998641 1000 0 12222222 11 24568899999999998543
No 175
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.65 E-value=2.5e-08 Score=87.28 Aligned_cols=97 Identities=12% Similarity=-0.055 Sum_probs=64.6
Q ss_pred CccccchhhhccccCCCEEEEeeeccccccccccCcccc-cHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccC
Q psy6623 111 GQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTN-RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS 189 (262)
Q Consensus 111 Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~-~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~ 189 (262)
+|++++.+...++++++++|+|+|+++ .. ++...-.|+..+-. .++|++|++||+|+..+....
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~----------p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~- 129 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKM----------PEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKK- 129 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTT----------TTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHH-
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCC----------CCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccH-
Confidence 488888889999999999999999997 22 33322333332222 478999999999996432000
Q ss_pred CCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 190 PLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 190 ~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
. ..-..+.+....+.++++||++|+||+++|..
T Consensus 130 ---~------------~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 130 ---E------------LERWISIYRDAGYDVLKVSAKTGEGIDELVDY 162 (302)
T ss_dssp ---H------------HHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred ---H------------HHHHHHHHHHCCCeEEEEECCCCCCHHHHHhh
Confidence 0 01111222223456889999999999998863
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.64 E-value=2.7e-08 Score=100.18 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=55.5
Q ss_pred EEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EE
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-II 173 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-ii 173 (262)
..+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++- .+.+..+++..+.. .++| ++
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG-----------v~~QTrEhL~ll~~----lgIP~II 416 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-----------PMPQTREHILLGRQ----VGVPYII 416 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC-----------SCTTHHHHHHHHHH----HTCSCEE
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc-----------CcHHHHHHHHHHHH----cCCCeEE
Confidence 34555678999999999999999999999999999999999872 12223333332221 2577 89
Q ss_pred EEeeCCchhh
Q psy6623 174 LFLNKKDLFE 183 (262)
Q Consensus 174 l~~NK~Dl~~ 183 (262)
|++||+|+..
T Consensus 417 VVINKiDLv~ 426 (1289)
T 3avx_A 417 VFLNKCDMVD 426 (1289)
T ss_dssp EEEECCTTCC
T ss_pred EEEeeccccc
Confidence 9999999864
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.63 E-value=3e-08 Score=88.97 Aligned_cols=119 Identities=10% Similarity=0.100 Sum_probs=55.6
Q ss_pred ecccceeEEEEee--ec--cceeeeecCCc-------cccchhhh-------ccccCCC-------------EEEEeeec
Q psy6623 87 VKTTGIVEVHFSF--KN--LNFKLFDVGGQ-------RSERKKWI-------HCFEDVT-------------AIIFCVAM 135 (262)
Q Consensus 87 ~pT~Gi~~~~~~~--~~--~~~~i~D~~Gq-------~~~r~~w~-------~~f~~~~-------------~iIfv~dl 135 (262)
.+|+++....+.+ ++ +.+++|||+|+ ++++.++. .|+++++ +++|+++.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 3566665544433 33 47899999999 88888887 7776544 46666654
Q ss_pred cccccccccCcccccHHHHH-HHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh
Q psy6623 136 SEYDQVLHEDETTNRMQESL-KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK 214 (262)
Q Consensus 136 s~~d~~~~e~~~~~~l~e~~-~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~ 214 (262)
+. .++.+.. .+++. +. .++|+++|+||+|+...+-.. .+ ..-+.+...
T Consensus 156 ~~-----------~~l~~~d~~~~~~-l~----~~~piIlV~NK~Dl~~~~ev~----~~-----------k~~i~~~~~ 204 (361)
T 2qag_A 156 FG-----------HGLKPLDVAFMKA-IH----NKVNIVPVIAKADTLTLKERE----RL-----------KKRILDEIE 204 (361)
T ss_dssp SS-----------SSCCHHHHHHHHH-TC----S-SCEEEEEECCSSSCHHHHH----HH-----------HHHHHHHTT
T ss_pred CC-----------CCcchhHHHHHHH-hc----cCCCEEEEEECCCCCCHHHHH----HH-----------HHHHHHHHH
Confidence 32 2333322 23333 22 468999999999987532100 00 122333333
Q ss_pred hccceeecccccccceeeeeehh
Q psy6623 215 LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 215 ~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
...+.++.+||++|.+ .+.|..
T Consensus 205 ~~~i~~~~~Sa~~~~~-~e~~~~ 226 (361)
T 2qag_A 205 EHNIKIYHLPDAESDE-DEDFKE 226 (361)
T ss_dssp CC-CCSCCCC----------CHH
T ss_pred HCCCCEEeCCCcCCCc-chhHHH
Confidence 3567788999999999 888853
No 178
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.52 E-value=2.4e-07 Score=80.93 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=71.5
Q ss_pred EeeeccceeeeecCCcc---------ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 97 FSFKNLNFKLFDVGGQR---------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq~---------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
+..++..+.+|||+|+. .++..+..+++.++++++|+|.+++ ..... ..++.+. .
T Consensus 51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~~--~i~~~l~-~--- 114 (301)
T 1ega_A 51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDDE--MVLNKLR-E--- 114 (301)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHHH--HHHHHHH-S---
T ss_pred EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHHH--HHHHHHH-h---
Confidence 34456789999999997 3445567788999999999998752 11111 2222222 1
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccc-eeecccccccceeeeeehhhHHHhhcc
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDS-ICNNKWFTDTSIILFLNKKDLFEEKIK 245 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~-~~~~tsA~d~~~I~~~f~~~lL~~~i~ 245 (262)
.+.|++|++||+|+...+-. + .+.+.+......+ .++.+||++|.|+..+++ .+...+.
T Consensus 115 ~~~P~ilvlNK~D~~~~~~~---~--------------~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~--~i~~~l~ 174 (301)
T 1ega_A 115 GKAPVILAVNKVDNVQEKAD---L--------------LPHLQFLASQMNFLDIVPISAETGLNVDTIAA--IVRKHLP 174 (301)
T ss_dssp SSSCEEEEEESTTTCCCHHH---H--------------HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHH--HHHTTCC
T ss_pred cCCCEEEEEECcccCccHHH---H--------------HHHHHHHHHhcCcCceEEEECCCCCCHHHHHH--HHHHhCC
Confidence 36899999999998641100 0 1111111111223 467899999999999995 4554443
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.52 E-value=1.8e-07 Score=90.32 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=60.5
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
|+......+..+++.+++|||+|+..++..+..+++.++++|+|+|.++ .-......++..+.. .
T Consensus 61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~-----------g~~~qt~~~~~~~~~----~ 125 (665)
T 2dy1_A 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQVGTERAWTVAER----L 125 (665)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----T
T ss_pred eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCc-----------ccchhHHHHHHHHHH----c
Confidence 3334455566678899999999999999999999999999999999875 112333455555443 3
Q ss_pred CCeEEEEeeCCchh
Q psy6623 169 DTSIILFLNKKDLF 182 (262)
Q Consensus 169 ~~piil~~NK~Dl~ 182 (262)
++|+++++||+|+.
T Consensus 126 ~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 126 GLPRMVVVTKLDKG 139 (665)
T ss_dssp TCCEEEEEECGGGC
T ss_pred cCCEEEEecCCchh
Confidence 68999999999985
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.49 E-value=1.5e-07 Score=91.20 Aligned_cols=84 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred eeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhC
Q psy6623 85 TRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN 164 (262)
Q Consensus 85 ~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~ 164 (262)
.+.+|++.....+.+++..+++|||+|+..++..+..+++.++++|+|+|.++. . .......|..+..
T Consensus 60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g----------~-~~~t~~~~~~~~~- 127 (691)
T 1dar_A 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG----------V-EPQSETVWRQAEK- 127 (691)
T ss_dssp -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC----------S-CHHHHHHHHHHHH-
T ss_pred hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC----------c-chhhHHHHHHHHH-
Confidence 345777777777888889999999999999999999999999999999999872 2 2333445554443
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++|+||+|+..
T Consensus 128 ---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 128 ---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp ---TTCCEEEEEECTTSTT
T ss_pred ---cCCCEEEEEECCCccc
Confidence 3689999999999865
No 181
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.48 E-value=2e-07 Score=92.22 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=55.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++|||+|+..|+..|..+++.++++|+|+|.++ ....+ ....|..... .++|+++|+||+|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~q-t~~~~~~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCVQ-TETVLRQALG----ERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCHH-HHHHHHHHHH----TTCEEEEEEECHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH----cCCCeEEEEECCC
Confidence 6789999999999999999999999999999999997 23333 3444554443 3689999999999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 974
No 182
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.45 E-value=3.5e-07 Score=77.56 Aligned_cols=86 Identities=13% Similarity=0.228 Sum_probs=59.0
Q ss_pred cccceeEEEEeeeccceeeeecCCc--------cccchhhhccc----cCCCEEEEeeeccccccccccCcccccHHHHH
Q psy6623 88 KTTGIVEVHFSFKNLNFKLFDVGGQ--------RSERKKWIHCF----EDVTAIIFCVAMSEYDQVLHEDETTNRMQESL 155 (262)
Q Consensus 88 pT~Gi~~~~~~~~~~~~~i~D~~Gq--------~~~r~~w~~~f----~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~ 155 (262)
.|.......+..++..+.+|||+|. +.+......++ ++++++|+|+|++.+. ......+
T Consensus 56 ~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~ 126 (247)
T 3lxw_A 56 VTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFT---------AQDQQAV 126 (247)
T ss_dssp -CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCC---------HHHHHHH
T ss_pred ccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCC---------HHHHHHH
Confidence 3445555566777889999999996 33434344444 9999999999998631 2234455
Q ss_pred HHHHHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 156 KLFDSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 156 ~~~~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+++..+.. +...+.|++||+||.|+..
T Consensus 127 ~~l~~~~~-~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 127 RQVRDMFG-EDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHC-GGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHhC-hhhhccEEEEEEchHhcCC
Confidence 66666653 2334689999999999854
No 183
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.43 E-value=4.6e-08 Score=87.99 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=64.3
Q ss_pred CccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCC
Q psy6623 111 GQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP 190 (262)
Q Consensus 111 Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~ 190 (262)
.++.|++.+.+++++++++|+|+|+++++ ..+...+...+ .+.|++||+||+|+..+......
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------------~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------------GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------------HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------------ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHH
Confidence 57889999999999999999999999742 11122223332 36899999999999642210000
Q ss_pred CcccCCCCCCCCcchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 191 LTICFPEYAGKRPGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 191 l~~~fp~~~g~~~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
+ .+++...+....+ .++.+||++|.||+++++.
T Consensus 118 ~--------------~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~ 153 (368)
T 3h2y_A 118 V--------------KHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADA 153 (368)
T ss_dssp H--------------HHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHH
T ss_pred H--------------HHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhh
Confidence 0 2344433333333 5789999999999998853
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.42 E-value=3e-07 Score=89.18 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=63.0
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
+..|++.....+.+++..+++|||+|+..+...+..+++.++++|+|+|.++ .. .......|..+..
T Consensus 59 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~----------g~-~~~~~~~~~~~~~-- 125 (693)
T 2xex_A 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS----------GV-EPQTETVWRQATT-- 125 (693)
T ss_dssp -----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTT----------BS-CHHHHHHHHHHHH--
T ss_pred cCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCC----------CC-cHHHHHHHHHHHH--
Confidence 4567776677778888999999999999999999999999999999999987 22 2334455555443
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++|+||+|+..
T Consensus 126 --~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 126 --YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp --TTCCEEEEEECTTSTT
T ss_pred --cCCCEEEEEECCCccc
Confidence 3689999999999864
No 185
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.42 E-value=1.5e-07 Score=80.46 Aligned_cols=84 Identities=10% Similarity=0.166 Sum_probs=56.4
Q ss_pred ccceeEEEEeeeccceeeeecCCccccchhhhcccc---------CCCEEEEeeeccccccccccCcccccH-HHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFE---------DVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLF 158 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~---------~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~ 158 (262)
|.......+..++..+.+|||+|+..++.....+++ +++++|||++++... .... ..++..+
T Consensus 71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~--------~~~~~~~~~~~l 142 (262)
T 3def_A 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA--------VDELDKQVVIAI 142 (262)
T ss_dssp CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC--------CCHHHHHHHHHH
T ss_pred ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC--------CCHHHHHHHHHH
Confidence 444555666778889999999999888766655554 789999999887511 1111 2344444
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~ 182 (262)
...+... ...|+++++||+|+.
T Consensus 143 ~~~~~~~--~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 143 TQTFGKE--IWCKTLLVLTHAQFS 164 (262)
T ss_dssp HHHHCGG--GGGGEEEEEECTTCC
T ss_pred HHHhchh--hhcCEEEEEeCcccC
Confidence 4444221 124899999999984
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.41 E-value=3.2e-07 Score=89.10 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=63.6
Q ss_pred eecccceeEEEEeeec-------cceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHH
Q psy6623 86 RVKTTGIVEVHFSFKN-------LNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~-------~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~ 158 (262)
+..|++.....+.+++ ..+++|||+|+..|...+..+++.++++|+|+|.++- ........|
T Consensus 59 rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~ 127 (704)
T 2rdo_7 59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVW 127 (704)
T ss_pred cCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHH
Confidence 3456665556666666 8999999999999999999999999999999999872 223344455
Q ss_pred HHHHhCCCCCCCeEEEEeeCCchhh
Q psy6623 159 DSICNNKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 159 ~~i~~~~~~~~~piil~~NK~Dl~~ 183 (262)
+.... .++|+++|+||+|+..
T Consensus 128 ~~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 128 RQANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHH----cCCCEEEEEeCCCccc
Confidence 44432 3689999999999865
No 187
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.40 E-value=4.8e-08 Score=87.87 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=64.2
Q ss_pred ecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhc
Q psy6623 108 DVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187 (262)
Q Consensus 108 D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~ 187 (262)
....|+.|++.+.+++++++++|+|+|+++++... ...+ ... +.+.|+++++||+|+..+...
T Consensus 54 v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~-----l~~~piilV~NK~DLl~~~~~ 116 (369)
T 3ec1_A 54 VPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRF-----AADNPILLVGNKADLLPRSVK 116 (369)
T ss_dssp -----CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHH-----CTTSCEEEEEECGGGSCTTCC
T ss_pred CcCCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHH-----hCCCCEEEEEEChhcCCCccC
Confidence 33469999999999999999999999999865211 1111 222 236899999999999653110
Q ss_pred cCCCcccCCCCCCCCcchhHHHHHHhhhccc---eeecccccccceeeeeehh
Q psy6623 188 KSPLTICFPEYAGKRPGERNRMQESLKLFDS---ICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 188 ~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~---~~~~tsA~d~~~I~~~f~~ 237 (262)
...+ .+++...+....+ .++.+||++|.|+.++++.
T Consensus 117 ~~~~--------------~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~ 155 (369)
T 3ec1_A 117 YPKL--------------LRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEA 155 (369)
T ss_dssp HHHH--------------HHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHH
Confidence 0000 3444444444333 5789999999999998863
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.28 E-value=4.3e-07 Score=81.15 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=52.1
Q ss_pred ccceeeeecCCcccc-------------chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGGQRSE-------------RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
...+.+|||+|+... +.+...|+++++++|+|+|.++.+ ....+++.+++.+. .
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~----~ 201 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----P 201 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----T
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----c
Confidence 467999999999886 677888999999999999887521 11234455544442 2
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.+.|+++|+||+|+..
T Consensus 202 ~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMD 217 (360)
T ss_dssp TCTTEEEEEECGGGCC
T ss_pred cCCCEEEEEeCCccCC
Confidence 3679999999999975
No 189
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.25 E-value=2.2e-06 Score=69.78 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=67.0
Q ss_pred EeeeccceeeeecCCccc----------cchhhhccc---cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 97 FSFKNLNFKLFDVGGQRS----------ERKKWIHCF---EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 97 ~~~~~~~~~i~D~~Gq~~----------~r~~w~~~f---~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.+++ .+.+||++|+.. +++....|+ +.++++++++|+++ ..+..+ ..+..++.
T Consensus 68 ~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~~~~~~~ 134 (210)
T 1pui_A 68 FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------PLKDLD--QQMIEWAV 134 (210)
T ss_dssp EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH--HHHHHHHH
T ss_pred EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC----------CCchhH--HHHHHHHH
Confidence 33444 788999999842 233333455 57899999999986 222211 11112221
Q ss_pred CCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--ccceeecccccccceeeeeehhhHHH
Q psy6623 164 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FDSICNNKWFTDTSIILFLNKKDLFE 241 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~~~~~~tsA~d~~~I~~~f~~~lL~ 241 (262)
..+.|+++++||+|+....-.... ...+...+.+ ..+...+|||+++.++.++++ +|.
T Consensus 135 ---~~~~~~~~v~nK~D~~s~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~--~l~ 194 (210)
T 1pui_A 135 ---DSNIAVLVLLTKADKLASGARKAQ---------------LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ--KLD 194 (210)
T ss_dssp ---HTTCCEEEEEECGGGSCHHHHHHH---------------HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHH--HHH
T ss_pred ---HcCCCeEEEEecccCCCchhHHHH---------------HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHH--HHH
Confidence 135889999999998642100000 1122222222 135577899999999999995 455
Q ss_pred hhcc
Q psy6623 242 EKIK 245 (262)
Q Consensus 242 ~~i~ 245 (262)
+.+.
T Consensus 195 ~~~~ 198 (210)
T 1pui_A 195 TWFS 198 (210)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 4443
No 190
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.13 E-value=2.1e-06 Score=73.44 Aligned_cols=79 Identities=10% Similarity=0.095 Sum_probs=48.9
Q ss_pred EEEeeeccceeeeecCCccccchhhh-------cc--ccCCCEEEEeeeccccccccccCcccccH-HHHHHHHHHHHhC
Q psy6623 95 VHFSFKNLNFKLFDVGGQRSERKKWI-------HC--FEDVTAIIFCVAMSEYDQVLHEDETTNRM-QESLKLFDSICNN 164 (262)
Q Consensus 95 ~~~~~~~~~~~i~D~~Gq~~~r~~w~-------~~--f~~~~~iIfv~dls~~d~~~~e~~~~~~l-~e~~~~~~~i~~~ 164 (262)
..+..++..+.+|||+|+..+..... .| .++++++|+|+|++... .... .+++..+...+..
T Consensus 80 ~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~--------~~~~~~~~~~~l~~~~~~ 151 (270)
T 1h65_A 80 VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR--------VDNLDKLVAKAITDSFGK 151 (270)
T ss_dssp EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC--------CCHHHHHHHHHHHHHHCG
T ss_pred EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc--------CCHHHHHHHHHHHHHhCc
Confidence 34555678899999999977653222 22 35799999999886511 1111 2333333333221
Q ss_pred CCCCCCeEEEEeeCCchhh
Q psy6623 165 KWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 165 ~~~~~~piil~~NK~Dl~~ 183 (262)
. ...|+++++||+|+..
T Consensus 152 ~--~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 152 G--IWNKAIVALTHAQFSP 168 (270)
T ss_dssp G--GGGGEEEEEECCSCCC
T ss_pred c--cccCEEEEEECcccCC
Confidence 1 1269999999999853
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.10 E-value=1.8e-06 Score=77.00 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=63.8
Q ss_pred ccceeeeecCCcc-------------ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCC
Q psy6623 101 NLNFKLFDVGGQR-------------SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWF 167 (262)
Q Consensus 101 ~~~~~i~D~~Gq~-------------~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~ 167 (262)
...+.+|||+|.. .++.+...|+++.+.+|+++..++-+ -.-.++..+++.+. .
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~---------~~~~~~~~i~~~~~----~ 195 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD---------LANSDALKVAKEVD----P 195 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC---------GGGCHHHHHHHHHC----T
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc---------cchhHHHHHHHHhC----c
Confidence 4789999999963 35567778888877666655433311 11123334444442 1
Q ss_pred CCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh--cc-ceeecccccccceeeeeehh
Q psy6623 168 TDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL--FD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~--~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+..+.- .. .+.+..+... .. ..++.+||+++.|+.++++.
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~---~~--------------~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~ 251 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGT---DA--------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 251 (353)
T ss_dssp TCTTEEEEEECGGGSCTTC---CC--------------HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHH
T ss_pred CCCceEEEeccccccCcch---hH--------------HHHHhCCcccccCCceEEEeCCcccccccccHHHH
Confidence 4689999999999965321 00 0111110000 12 23678999999999999864
No 192
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.09 E-value=3.8e-06 Score=81.44 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=50.1
Q ss_pred cceeeeecCCccc---cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 102 LNFKLFDVGGQRS---ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 102 ~~~~i~D~~Gq~~---~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
..+.+|||+|... ....+..|+++++++|||+|.++ .....+ ...+...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence 5789999999765 45677889999999999999886 233333 3334333322 25789999999
Q ss_pred Cchhhh
Q psy6623 179 KDLFEE 184 (262)
Q Consensus 179 ~Dl~~~ 184 (262)
+|+...
T Consensus 240 ~Dl~~~ 245 (695)
T 2j69_A 240 WDQVRE 245 (695)
T ss_dssp GGGGGG
T ss_pred cccccc
Confidence 999754
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.06 E-value=2.3e-06 Score=72.40 Aligned_cols=72 Identities=17% Similarity=0.040 Sum_probs=43.0
Q ss_pred ccceeeeecCCccccchhhh------ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 101 NLNFKLFDVGGQRSERKKWI------HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~------~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
+..+.+|||+|+......+. .++.+ +.+|+++|.+.... ...+............ ..+.|+++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~---~~~~p~~i 176 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDL---RLGATTIP 176 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHH---HHTSCEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhc---ccCCCeEE
Confidence 35789999999977544322 24567 89999999875210 1112211111111111 12579999
Q ss_pred EeeCCchhh
Q psy6623 175 FLNKKDLFE 183 (262)
Q Consensus 175 ~~NK~Dl~~ 183 (262)
++||+|+..
T Consensus 177 v~NK~D~~~ 185 (262)
T 1yrb_A 177 ALNKVDLLS 185 (262)
T ss_dssp EECCGGGCC
T ss_pred EEecccccc
Confidence 999999864
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.99 E-value=8.2e-06 Score=74.39 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred Eeeec-cceeeeecCCccc----cchhhhcc---ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 97 FSFKN-LNFKLFDVGGQRS----ERKKWIHC---FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 97 ~~~~~-~~~~i~D~~Gq~~----~r~~w~~~---f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
+...+ ..+.+||++|... .+.+...+ .+.++.+|+++|+++ . ....+....+.+..+. +.+.
T Consensus 199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~--~------~~~~ls~g~~el~~la--~aL~ 268 (416)
T 1udx_A 199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--E------PLKTLETLRKEVGAYD--PALL 268 (416)
T ss_dssp EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS--C------HHHHHHHHHHHHHHHC--HHHH
T ss_pred EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCcc--C------CHHHHHHHHHHHHHHh--HHhh
Confidence 33443 6789999999843 22232233 356999999999971 1 1233333333333321 1233
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
..|.+|++||+|+..... ...+.+.+....+.++.+||++++||+++++.
T Consensus 269 ~~P~ILVlNKlDl~~~~~-------------------~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 269 RRPSLVALNKVDLLEEEA-------------------VKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HSCEEEEEECCTTSCHHH-------------------HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred cCCEEEEEECCChhhHHH-------------------HHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 578999999999864210 22233333334566889999999999999964
No 195
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.96 E-value=7.9e-06 Score=71.09 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=48.9
Q ss_pred eccceeeeecCCccc-------------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 100 KNLNFKLFDVGGQRS-------------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~-------------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
.+..+.+|||+|... ++..+..|+++++++|+|+|.++-+. .. .+...+++.+. .
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~--~~~~~i~~~~~-~-- 196 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------AN--SDALQLAKEVD-P-- 196 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TT--CSHHHHHHHHC-S--
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hh--hHHHHHHHHhC-C--
Confidence 357899999999864 56677889999999999999865210 00 11122333332 1
Q ss_pred CCCCeEEEEeeCCchhh
Q psy6623 167 FTDTSIILFLNKKDLFE 183 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~ 183 (262)
.+.|+++|+||+|+..
T Consensus 197 -~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 197 -EGKRTIGVITKLDLMD 212 (315)
T ss_dssp -SCSSEEEEEECTTSSC
T ss_pred -CCCcEEEEEcCcccCC
Confidence 3689999999999864
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.87 E-value=1.1e-05 Score=70.25 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=51.2
Q ss_pred cceeeeecCCc-------cccchhhh-------ccccCCC-------------EEEEeeeccccccccccCcccccHHHH
Q psy6623 102 LNFKLFDVGGQ-------RSERKKWI-------HCFEDVT-------------AIIFCVAMSEYDQVLHEDETTNRMQES 154 (262)
Q Consensus 102 ~~~~i~D~~Gq-------~~~r~~w~-------~~f~~~~-------------~iIfv~dls~~d~~~~e~~~~~~l~e~ 154 (262)
..+++||++|+ +.++.++. .|+++.+ +++|+.+.+. .++...
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~ 144 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL 144 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHH
Confidence 57899999999 67777766 6665543 3555555332 112111
Q ss_pred -HHHHHHHHhCCCCCCCeEEEEeeCCchhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceee
Q psy6623 155 -LKLFDSICNNKWFTDTSIILFLNKKDLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIIL 232 (262)
Q Consensus 155 -~~~~~~i~~~~~~~~~piil~~NK~Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~ 232 (262)
.++++.+. .++++++|+||.|+..++ +... .+.+.+......+.++++||+++ ||+
T Consensus 145 ~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~~~~----------------~~~~~~~~~~~~~~~~e~Sa~~~-~v~ 202 (301)
T 2qnr_A 145 DVAFMKAIH-----NKVNIVPVIAKADTLTLKERERL----------------KKRILDEIEEHNIKIYHLPDAES-DED 202 (301)
T ss_dssp HHHHHHHHT-----TTSCEEEEECCGGGSCHHHHHHH----------------HHHHHHHHHHTTCCCCCCC--------
T ss_pred HHHHHHHHH-----hcCCEEEEEEeCCCCCHHHHHHH----------------HHHHHHHHHHcCCeEEecCCccc-ccc
Confidence 23333332 357999999999997432 1000 12233333335677899999999 999
Q ss_pred eeehh
Q psy6623 233 FLNKK 237 (262)
Q Consensus 233 ~~f~~ 237 (262)
++|..
T Consensus 203 e~f~~ 207 (301)
T 2qnr_A 203 EDFKE 207 (301)
T ss_dssp --CHH
T ss_pred HHHHH
Confidence 99963
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.83 E-value=3.7e-05 Score=63.06 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=61.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.+||++|+-... .++..+.+++|+|+|.++.. .... .+.... +.|++|++||+
T Consensus 107 ~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~---------~~~~----~~~~~~------~~~~iiv~NK~ 164 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGD---------DVVE----KHPEIF------RVADLIVINKV 164 (221)
T ss_dssp TTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCT---------THHH----HCHHHH------HTCSEEEEECG
T ss_pred CCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcc---------hhhh----hhhhhh------hcCCEEEEecc
Confidence 34678899999962111 11223678899999998721 1111 111111 46889999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehhhHHHhhc
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 244 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~~lL~~~i 244 (262)
|+.... ...+... .+++... ...+.++.+||++|+||.++|+ +|...+
T Consensus 165 Dl~~~~--~~~~~~~-----------~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~--~l~~~~ 212 (221)
T 2wsm_A 165 ALAEAV--GADVEKM-----------KADAKLI--NPRAKIIEMDLKTGKGFEEWID--FLRGIL 212 (221)
T ss_dssp GGHHHH--TCCHHHH-----------HHHHHHH--CTTSEEEECBTTTTBTHHHHHH--HHHHHH
T ss_pred cCCcch--hhHHHHH-----------HHHHHHh--CCCCeEEEeecCCCCCHHHHHH--HHHHHH
Confidence 996532 0011000 2222221 1235678999999999999995 455544
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.80 E-value=1.4e-05 Score=75.52 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred cceeeeecCCccc-----------cchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC
Q psy6623 102 LNFKLFDVGGQRS-----------ERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT 170 (262)
Q Consensus 102 ~~~~i~D~~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~ 170 (262)
..+.+|||+|... +...+..++++++++|+|+|.++. ....+...+++.+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence 3689999999875 556777889999999999999862 223334444444322 357
Q ss_pred eEEEEeeCCchhh
Q psy6623 171 SIILFLNKKDLFE 183 (262)
Q Consensus 171 piil~~NK~Dl~~ 183 (262)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999863
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.78 E-value=1.3e-05 Score=71.56 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.+|||+|-.. -.....+.++++|+|+|.+.-++. ..+. ....+.|++|++||+
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~-------~~l~------------~~~~~~p~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL-------QGIK------------KGVLELADIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT-------TTCC------------TTSGGGCSEEEEECC
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH-------HHHH------------HhHhhcCCEEEEECC
Confidence 467899999999432 233345899999999997752211 0000 112346899999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhh-------ccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKL-------FDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-------~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+..+.-.... ...+...+.. ....++.+||++|+||.++++.
T Consensus 228 Dl~~~~~~~~~---------------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~ 277 (355)
T 3p32_A 228 DGEHHKEARLA---------------ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDT 277 (355)
T ss_dssp CGGGHHHHHHH---------------HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHH
T ss_pred CCcChhHHHHH---------------HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHH
Confidence 98643210000 1112221110 1245788999999999999964
No 200
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.78 E-value=1.3e-05 Score=72.75 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred ccceeeeecCCccc----cchhh---hccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRS----ERKKW---IHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~----~r~~w---~~~f~~~~~iIfv~dls~ 137 (262)
.+.+.+|||+|+.. .+.++ ..++++++++|+|+|+++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 36799999999854 23333 356799999999999987
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.68 E-value=6.7e-05 Score=70.75 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=65.9
Q ss_pred eeeecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHh
Q psy6623 84 RTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICN 163 (262)
Q Consensus 84 ~~~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~ 163 (262)
+.|--|+--....+.+++..++|.||+|+--|..--..-.+-++++|+|+|..+ --...+...|+....
T Consensus 82 reRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~ 150 (548)
T 3vqt_A 82 RERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRM 150 (548)
T ss_dssp ------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHH
T ss_pred HHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHH
Confidence 345566666677889999999999999999988777777889999999999986 445666777776664
Q ss_pred CCCCCCCeEEEEeeCCchhh
Q psy6623 164 NKWFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 164 ~~~~~~~piil~~NK~Dl~~ 183 (262)
.++|+++|.||+|...
T Consensus 151 ----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 151 ----RATPVMTFVNKMDREA 166 (548)
T ss_dssp ----TTCCEEEEEECTTSCC
T ss_pred ----hCCceEEEEecccchh
Confidence 3789999999999754
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.49 E-value=0.00016 Score=65.83 Aligned_cols=54 Identities=17% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
++|+|+|+||+|+...+- +..+ ..-+.+.+....+.++.+||+++.++..+|..
T Consensus 167 ~v~iIlVinK~Dll~~~e----v~~~-----------k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~ 220 (418)
T 2qag_C 167 KVNIIPLIAKADTLTPEE----CQQF-----------KKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 220 (418)
T ss_dssp TSEEEEEEESTTSSCHHH----HHHH-----------HHHHHHHHHHHTCCCCCCC-------------
T ss_pred cCcEEEEEEcccCccHHH----HHHH-----------HHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHH
Confidence 689999999999864221 1000 12233333335677889999999999987753
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.38 E-value=0.00015 Score=62.65 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=56.6
Q ss_pred cCCcc-ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhc
Q psy6623 109 VGGQR-SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187 (262)
Q Consensus 109 ~~Gq~-~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~ 187 (262)
..|+. ..++......+.+++||.|+|..+- ..... ..+..++ .+.|+++++||+||.....
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p----------~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~- 67 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIP----------MSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV- 67 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTST----------TTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCC----------CccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH-
Confidence 45553 4555566678999999999999872 11110 1222222 4789999999999965211
Q ss_pred cCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 188 KSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 188 ~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+-..+.+....+.++.+||+++.|+.++++.
T Consensus 68 ------------------~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~ 99 (282)
T 1puj_A 68 ------------------TQQWKEHFENQGIRSLSINSVNGQGLNQIVPA 99 (282)
T ss_dssp ------------------HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHH
T ss_pred ------------------HHHHHHHHHhcCCcEEEEECCCcccHHHHHHH
Confidence 00111112223355778999999999988864
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.27 E-value=8.1e-05 Score=71.47 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=64.4
Q ss_pred eecccceeEEEEeeeccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCC
Q psy6623 86 RVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNK 165 (262)
Q Consensus 86 ~~pT~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~ 165 (262)
|--|+-.....+.+++..+++.||+|+..|..--..-.+-+|++|+|+|..+ --...+...|+.....
T Consensus 51 RGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~-----------GV~~qT~~v~~~a~~~- 118 (638)
T 3j25_A 51 RGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-----------GVQAQTRILFHALRKM- 118 (638)
T ss_dssp HSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC-----------TTCSHHHHHHHHHHHH-
T ss_pred CCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC-----------CCcHHHHHHHHHHHHc-
Confidence 4455555566678899999999999999988888888899999999999986 2233455666665543
Q ss_pred CCCCCeEEEEeeCCchhh
Q psy6623 166 WFTDTSIILFLNKKDLFE 183 (262)
Q Consensus 166 ~~~~~piil~~NK~Dl~~ 183 (262)
++|.++|.||+|...
T Consensus 119 ---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 119 ---GIPTIFFINKIDQNG 133 (638)
T ss_dssp ---TCSCEECCEECCSSS
T ss_pred ---CCCeEEEEecccccc
Confidence 688999999999754
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.21 E-value=0.0001 Score=65.32 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=58.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+.+|||+|....... ..+.++++|+|+|.+..+.. ..+.. .. .+.|.++|+||+
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK~ 204 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINKD 204 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECCC
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEECC
Confidence 4678999999996544322 35899999999998763321 11110 01 135789999999
Q ss_pred chhhhh-hccCCCcccCCCCCCCCcchhHHHHHHhhh-----c--cceeecccccccceeeeeehh
Q psy6623 180 DLFEEK-IKKSPLTICFPEYAGKRPGERNRMQESLKL-----F--DSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~k-l~~~~l~~~fp~~~g~~~~~~~~i~~~f~~-----~--~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+.... .... ...+...+.. . ...++.+||++|+||.++++.
T Consensus 205 Dl~~~~~~~~~----------------~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~ 254 (341)
T 2p67_A 205 DGDNHTNVAIA----------------RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHA 254 (341)
T ss_dssp CTTCHHHHHHH----------------HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHH
T ss_pred CCCChHHHHHH----------------HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHH
Confidence 986421 1000 0111111111 1 234678999999999999953
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.05 E-value=0.00068 Score=60.19 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=56.7
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
.+..+.++||+|-. .-+....+.++.+++|+|.+.. ....... ..+ -..|.++++||+
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~----------~~~~~i~---~~i------l~~~~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGG----------DELQGIK---RGI------IEMADLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcc----------hhHHHhH---HHH------HhcCCEEEEeee
Confidence 56788999999953 2244557899999999998862 1111110 011 235789999999
Q ss_pred chhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh-------hccceeecccccccceeeeeehh
Q psy6623 180 DLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK-------LFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 180 Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~-------~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
|+....-.... ...+..... .....++.+||++|+|+.++++.
T Consensus 223 Dl~~~~~~~~~---------------~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~ 272 (349)
T 2www_A 223 DGDLIVPARRI---------------QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDK 272 (349)
T ss_dssp SGGGHHHHHHH---------------HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHH
T ss_pred cCCCchhHHHH---------------HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHH
Confidence 98642100000 000110000 01124567999999999999853
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.02 E-value=0.00087 Score=65.07 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=55.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+++.||+|+-.|..--..-.+-+|++|+|+|..+ --...+...|+..... ++|+++|.||+|
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~v~~~a~~~----~lp~i~~iNKiD 148 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSETVWRQANKY----GVPRIVYVNKMD 148 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHHH----TCCEEEEEECSS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCeEEEEcccc
Confidence 5789999999999887777777888999999999986 3445566677776643 689999999999
Q ss_pred hhh
Q psy6623 181 LFE 183 (262)
Q Consensus 181 l~~ 183 (262)
...
T Consensus 149 r~~ 151 (709)
T 4fn5_A 149 RQG 151 (709)
T ss_dssp STT
T ss_pred ccC
Confidence 753
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.98 E-value=0.0014 Score=58.60 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=29.6
Q ss_pred ccceeeeecCCccccc-------hhhhccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSER-------KKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~ 137 (262)
+..+++||++|+.... ..+..++++++++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4679999999997653 234456899999999999986
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.97 E-value=0.0019 Score=57.70 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.1
Q ss_pred cceeeeecCCccccc----hh---hhccccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQRSER----KK---WIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r----~~---w~~~f~~~~~iIfv~dls~ 137 (262)
..+++||++|+.... .+ +..++++++++|+|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999998753 23 3345799999999999987
No 210
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.74 E-value=0.001 Score=64.79 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=62.2
Q ss_pred ccceeeeecCCccc-------------cchhhhccc-cCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC
Q psy6623 101 NLNFKLFDVGGQRS-------------ERKKWIHCF-EDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW 166 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~-------------~r~~w~~~f-~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~ 166 (262)
...+.++||+|-.. .+.+...|. ..++.|++|+|.+. .-.-.+.+.+.+.+..
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~----------~~~~~d~l~ll~~L~~--- 215 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP--- 215 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS----------CSSSCHHHHHHHHHCT---
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC----------CcchhHHHHHHHHHHh---
Confidence 35688999999543 122223344 57899999999886 1122233344444432
Q ss_pred CCCCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhh--hcc-ceeecccccccceeeeeehh
Q psy6623 167 FTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLK--LFD-SICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 167 ~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~--~~~-~~~~~tsA~d~~~I~~~f~~ 237 (262)
.+.|+++|+||+|+..+.-. . ......+.. ... ..+..+||++|.|+..+.+.
T Consensus 216 -~g~pvIlVlNKiDlv~~~~~---~--------------~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 216 -QGQRTIGVITKLDLMDEGTD---A--------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp -TCSSEEEEEECTTSSCTTCC---S--------------HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHH
T ss_pred -cCCCEEEEEeCcccCCcchh---h--------------HHHHHHHhhhhhccCCceEEecccccccchhHHHH
Confidence 36899999999998642110 0 000000000 011 23667999999999998864
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.58 E-value=0.00076 Score=55.27 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=33.7
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeehh
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNKK 237 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~~ 237 (262)
+.|.+|++||+|+..++- ..+... .+++.. + ...+.++++||++|+||.++|+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~--~~~~~~-----------~~~~~~-~-~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG--ADIKKM-----------ENDAKR-I-NPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp TTCSEEEEECGGGHHHHT--CCHHHH-----------HHHHHH-H-CTTSEEEECCTTTCTTHHHHHHH
T ss_pred hcCCEEEEeccccCchhH--HHHHHH-----------HHHHHH-h-CCCCeEEEEEecCCCCHHHHHHH
Confidence 367899999999975321 000000 122221 1 12456789999999999999953
No 212
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.51 E-value=0.0036 Score=54.58 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=52.8
Q ss_pred hhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccCCCC
Q psy6623 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEY 198 (262)
Q Consensus 119 w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~fp~~ 198 (262)
+..-..++|.+++|+|+.+.+ -+.. -+..+-..+. ..++|.+|++||+||..+.....
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~---------~~~~-~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~--------- 137 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPS---------FSTA-LLDRFLVLVE---ANDIQPIICITKMDLIEDQDTED--------- 137 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTT---------CCHH-HHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHH---------
T ss_pred hHHHHHhCCEEEEEEeCCCCC---------CCHH-HHHHHHHHHH---HCCCCEEEEEECCccCchhhhHH---------
Confidence 334578999999999987511 1111 2222222222 24688999999999965210000
Q ss_pred CCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 199 AGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 199 ~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
..+-+.+.|......++.+||+++.++..++.
T Consensus 138 ------~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 138 ------TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp ------HHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred ------HHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 01122333333345677899999999887765
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.18 E-value=0.0011 Score=56.42 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=49.1
Q ss_pred chhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCchhhhhhccCCCcccC
Q psy6623 116 RKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF 195 (262)
Q Consensus 116 r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~Dl~~~kl~~~~l~~~f 195 (262)
++.......+++.||.|+|..+-... .+. .++ .. +.|.++++||+||.....
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~------~~~------~l~------ll-~k~~iivlNK~DL~~~~~--------- 63 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFAT------SAY------GVD------FS-RKETIILLNKVDIADEKT--------- 63 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTT------SCT------TSC------CT-TSEEEEEEECGGGSCHHH---------
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcC------cCh------HHH------hc-CCCcEEEEECccCCCHHH---------
Confidence 34455567899999999999862110 010 001 11 689999999999965211
Q ss_pred CCCCCCCcchhHHHHHHhhhccceeecccccccceeeeeeh
Q psy6623 196 PEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLNK 236 (262)
Q Consensus 196 p~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f~ 236 (262)
.+-..+.+....+.+ .+||+++.|+..+++
T Consensus 64 ----------~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~ 93 (262)
T 3cnl_A 64 ----------TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKK 93 (262)
T ss_dssp ----------HHHHHHHHHHTTCCE-EECCTTSCHHHHHHH
T ss_pred ----------HHHHHHHHHHcCCeE-EEECCCCcCHHHHHH
Confidence 011111222223445 899999998877664
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.29 E-value=0.019 Score=51.79 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=25.4
Q ss_pred cceeeeecCCccccch-------hhhccccCCCEEEEeeeccccc
Q psy6623 102 LNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCVAMSEYD 139 (262)
Q Consensus 102 ~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~d 139 (262)
..+++||++|+...++ .|..++++++++++|+|+++-+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3589999999987654 6788899999999999998743
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.30 E-value=0.055 Score=48.02 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=31.8
Q ss_pred CCeEEEEeeCCchhhhhhccCCCcccCCCCCCCCcchhHHHHHHhhhccceeecccccccceeeeee
Q psy6623 169 DTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTSIILFLN 235 (262)
Q Consensus 169 ~~piil~~NK~Dl~~~kl~~~~l~~~fp~~~g~~~~~~~~i~~~f~~~~~~~~~tsA~d~~~I~~~f 235 (262)
++|.+||+||+||..+.... . .+-....|....+.++.+||+++.++..+.
T Consensus 160 ~~~~iivlNK~DL~~~~~~~-~---------------~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 160 QVEPLIVLNKIDLLDDEGMD-F---------------VNEQMDIYRNIGYRVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp TCEEEEEEECGGGCCHHHHH-H---------------HHHHHHHHHTTTCCEEECBTTTTBTHHHHH
T ss_pred CCCEEEEEECccCCCchhHH-H---------------HHHHHHHHHhCCCcEEEEecCCCcCHHHHH
Confidence 57889999999996532100 0 111223344444567889999998887654
No 216
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.78 E-value=0.012 Score=51.70 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=26.3
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccc
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
.+..+.++||+|...-. ....+.++.+++|+|.+.
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~ 180 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGA 180 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCC
Confidence 56789999999975422 223478999999999764
No 217
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.15 Score=45.52 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=49.8
Q ss_pred ccceeEEEEeeeccceeeeecCCccccch-------hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHH
Q psy6623 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERK-------KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI 161 (262)
Q Consensus 89 T~Gi~~~~~~~~~~~~~i~D~~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i 161 (262)
|+..+...+.+.+.++++.||+|-..-.. ......+.++++++|+|.++ . +.+...+..++
T Consensus 106 T~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~----------p--~~~~~~i~~EL 173 (376)
T 4a9a_A 106 TLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK----------P--LHHKQIIEKEL 173 (376)
T ss_dssp CCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS----------H--HHHHHHHHHHH
T ss_pred eeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc----------c--HHHHHHHHHHH
Confidence 33334445677889999999999643211 12234578999999999986 2 11111111122
Q ss_pred Hh-CCCCCCCeEEEEeeCCchh
Q psy6623 162 CN-NKWFTDTSIILFLNKKDLF 182 (262)
Q Consensus 162 ~~-~~~~~~~piil~~NK~Dl~ 182 (262)
.. ...+.+.|.++++||.|..
T Consensus 174 ~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 174 EGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHTTEEETCCCCCEEEEECSSS
T ss_pred HHhhHhhccCChhhhhhHhhhh
Confidence 11 2234567888999999964
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=81.67 E-value=1.7 Score=40.26 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=39.2
Q ss_pred eccceeeeecCCccccc-hhhhcc-----ccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE-
Q psy6623 100 KNLNFKLFDVGGQRSER-KKWIHC-----FEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI- 172 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r-~~w~~~-----f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi- 172 (262)
++..+.|+||+|..... ..+... .-.++.+++|+|.+. ... +......+.. .+|+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~----------g~~---~~~~a~~~~~-----~~~i~ 243 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI----------GQA---CEAQAKAFKD-----KVDVA 243 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC----------CTT---HHHHHHHHHH-----HHCCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc----------ccc---HHHHHHHHHh-----hcCce
Confidence 46789999999976421 222111 227899999999876 111 2222222211 1464
Q ss_pred EEEeeCCchh
Q psy6623 173 ILFLNKKDLF 182 (262)
Q Consensus 173 il~~NK~Dl~ 182 (262)
.|++||.|..
T Consensus 244 gvVlNK~D~~ 253 (504)
T 2j37_W 244 SVIVTKLDGH 253 (504)
T ss_dssp CEEEECTTSC
T ss_pred EEEEeCCccc
Confidence 7889999975
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=74.55 E-value=2.5 Score=37.81 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=28.3
Q ss_pred cceeeeecCCccc-------cchhhhccccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQRS-------ERKKWIHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~ 137 (262)
..+.+||++|... .+..+..++++++++++|+|+++
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999533 34466777899999999999976
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=70.46 E-value=9.3 Score=29.66 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=43.7
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC-CCCCeEEEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-FTDTSIILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-~~~~piil~~NK~ 179 (262)
+..+-+.|++|.- ..........++.+|+++..+. .+ ......++.+..... ..+.++.+++|+.
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-----------~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-----------LD-FSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-----------TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-----------HH-HHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4667899999865 2334455667999999998775 34 444444444432211 2356779999999
Q ss_pred ch
Q psy6623 180 DL 181 (262)
Q Consensus 180 Dl 181 (262)
|-
T Consensus 141 ~~ 142 (206)
T 4dzz_A 141 IE 142 (206)
T ss_dssp CT
T ss_pred CC
Confidence 84
No 221
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=64.87 E-value=26 Score=29.28 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=43.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE-EEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII-LFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii-l~~NK~ 179 (262)
+..+-|.|+++.-... ........++.+|+|+..+. .++..+...++.+.....-.+.+++ +|+|+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~-----------~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~ 223 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDF-----------DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRS 223 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSH-----------HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcH-----------HHHHHHHHHHHHHHHhhhcCCCceEEEEEecC
Confidence 4677899997754322 12334578999999987664 5556665555555432222356655 889999
Q ss_pred ch
Q psy6623 180 DL 181 (262)
Q Consensus 180 Dl 181 (262)
+-
T Consensus 224 ~~ 225 (307)
T 3end_A 224 RA 225 (307)
T ss_dssp SC
T ss_pred Cc
Confidence 84
No 222
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=60.67 E-value=16 Score=28.98 Aligned_cols=67 Identities=4% Similarity=0.063 Sum_probs=44.1
Q ss_pred eccceeeeecCCc-cccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeC
Q psy6623 100 KNLNFKLFDVGGQ-RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq-~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK 178 (262)
+...+-+.|++|. ... .....+..++.+|+++..+. .++......++.+-... +.++.+++|+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-----------~~~~~~~~~~~~l~~~~---~~~~~vv~N~ 129 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-----------LALDALMLTIETLQKLG---NNRFRILLTI 129 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-----------HHHHHHHHHHHHHHHTC---SSSEEEEECS
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-----------hhHHHHHHHHHHHHhcc---CCCEEEEEEe
Confidence 3567889999986 432 23345678999999988764 45555555554443311 4568899999
Q ss_pred Cchh
Q psy6623 179 KDLF 182 (262)
Q Consensus 179 ~Dl~ 182 (262)
.|-.
T Consensus 130 ~~~~ 133 (209)
T 3cwq_A 130 IPPY 133 (209)
T ss_dssp BCCT
T ss_pred cCCc
Confidence 9854
No 223
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=58.69 E-value=25 Score=28.73 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=40.2
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE-EEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII-LFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii-l~~NK 178 (262)
+...+-|.|+++.-........-...++.+|+|+..+. .++......++.+-. .+.+++ +++|+
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-----------~s~~~~~~~~~~l~~----~~~~~~gvV~N~ 191 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-----------LTAVIVEKAINMAEE----TNTSVLGLVENM 191 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-----------CCHHHHHHHHHHHHT----TTCCEEEEEETT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-----------chHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 35678899999864321111111225788998887664 445555555544432 145666 89999
Q ss_pred Cch
Q psy6623 179 KDL 181 (262)
Q Consensus 179 ~Dl 181 (262)
.|.
T Consensus 192 ~~~ 194 (262)
T 2ph1_A 192 SYF 194 (262)
T ss_dssp CCE
T ss_pred Ccc
Confidence 874
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.13 E-value=22 Score=30.06 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=38.2
Q ss_pred eccceeeeecCCccc--cch-hhh-----ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe
Q psy6623 100 KNLNFKLFDVGGQRS--ERK-KWI-----HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~--~r~-~w~-----~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p 171 (262)
++..+-+.||+|... ... +.. .....++.+++|+|.+. .. ++....+.+.. ..+
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~----------g~---~~~~~~~~~~~-----~~~ 240 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI----------GQ---KAYDLASKFNQ-----ASK 240 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG----------GG---GHHHHHHHHHH-----TCT
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc----------hH---HHHHHHHHHHh-----hCC
Confidence 356788999999765 211 110 12346899999999764 11 22222222221 244
Q ss_pred -EEEEeeCCchh
Q psy6623 172 -IILFLNKKDLF 182 (262)
Q Consensus 172 -iil~~NK~Dl~ 182 (262)
..+++||.|..
T Consensus 241 i~gvVlnk~D~~ 252 (297)
T 1j8m_F 241 IGTIIITKMDGT 252 (297)
T ss_dssp TEEEEEECGGGC
T ss_pred CCEEEEeCCCCC
Confidence 56788999964
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.68 E-value=29 Score=31.15 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=38.7
Q ss_pred eccceeeeecCCccccch-hh-----hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCC-e-
Q psy6623 100 KNLNFKLFDVGGQRSERK-KW-----IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDT-S- 171 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~-~w-----~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~-p- 171 (262)
.+..+-+.||+|...... +. ..-...++.+++|+|.+. .. ++....+.. +. .. |
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~----------g~---~~~~~~~~~-~~----~~~~i 240 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTI----------GQ---QAGIQAKAF-KE----AVGEI 240 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGG----------GG---GHHHHHHHH-HT----TSCSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccc----------cH---HHHHHHHHH-hh----cccCC
Confidence 456788999999754211 11 112236899999999875 11 222222222 21 23 4
Q ss_pred EEEEeeCCchh
Q psy6623 172 IILFLNKKDLF 182 (262)
Q Consensus 172 iil~~NK~Dl~ 182 (262)
..+++||.|..
T Consensus 241 ~gvVlnK~D~~ 251 (432)
T 2v3c_C 241 GSIIVTKLDGS 251 (432)
T ss_dssp EEEEEECSSSC
T ss_pred eEEEEeCCCCc
Confidence 78899999974
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=54.63 E-value=16 Score=33.03 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=37.1
Q ss_pred ccceeeeecCCccccchhh------hccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEE
Q psy6623 101 NLNFKLFDVGGQRSERKKW------IHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIIL 174 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w------~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil 174 (262)
+..+-|.||+|-.....-. ..-...++.+++|+|.+. ..........|...+ .+..|
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~----------gq~a~~~a~~f~~~~-------~i~gV 244 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI----------GQQAYNQALAFKEAT-------PIGSI 244 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG----------GGGHHHHHHHHHHSC-------TTEEE
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC----------chhHHHHHHHHHhhC-------CCeEE
Confidence 3678899999953321111 011235788999999875 222222223332211 23468
Q ss_pred EeeCCchhh
Q psy6623 175 FLNKKDLFE 183 (262)
Q Consensus 175 ~~NK~Dl~~ 183 (262)
++||.|...
T Consensus 245 IlTKlD~~~ 253 (443)
T 3dm5_A 245 IVTKLDGSA 253 (443)
T ss_dssp EEECCSSCS
T ss_pred EEECCCCcc
Confidence 899999753
No 227
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=53.82 E-value=0.74 Score=42.02 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=29.4
Q ss_pred cceeeeecCCc--cccchhh--------hccccCCCEEEEeeeccc
Q psy6623 102 LNFKLFDVGGQ--RSERKKW--------IHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 102 ~~~~i~D~~Gq--~~~r~~w--------~~~f~~~~~iIfv~dls~ 137 (262)
....+||.+|+ .+.|..| ..|+.+..|.++|+|.++
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn 132 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATN 132 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45689999999 4557777 778888889999999986
No 228
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=52.20 E-value=27 Score=27.65 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=42.3
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+-+.|+++.-. .........++.+|+|+..+. .++......++.+... ....+-+++||.+
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-----------~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~ 174 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-----------SCLTDTMKVGIVLKKA---GLAILGFVLNRYG 174 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-----------HHHHHHHHHHHHHHHT---TCEEEEEEEEEET
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-----------ccHHHHHHHHHHHHhC---CCceEEEEEecCC
Confidence 46678999987644 333445678999999987663 4555555555544432 2245678899988
Q ss_pred h
Q psy6623 181 L 181 (262)
Q Consensus 181 l 181 (262)
-
T Consensus 175 ~ 175 (237)
T 1g3q_A 175 R 175 (237)
T ss_dssp S
T ss_pred c
Confidence 5
No 229
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=48.54 E-value=26 Score=27.84 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=41.5
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
++..+-+.|+++.-.. ........++.+|+|+..+. .++.......+ ++... .-..+.+++||.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-----------~s~~~~~~~~~-~~~~~--~~~~~~~v~N~~ 193 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNL-----------NSIKTGLNIEK-LAGDL--GIKKVRYVINKV 193 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSH-----------HHHHHHHHHHH-HHHHH--TCSCEEEEEEEE
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCH-----------HHHHHHHHHHH-HHHHc--CCccEEEEEeCC
Confidence 3467889999885433 34455688999999998764 34444433333 22221 224578889998
Q ss_pred ch
Q psy6623 180 DL 181 (262)
Q Consensus 180 Dl 181 (262)
+-
T Consensus 194 ~~ 195 (254)
T 3kjh_A 194 RN 195 (254)
T ss_dssp CC
T ss_pred CC
Confidence 83
No 230
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=47.25 E-value=24 Score=28.43 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=45.8
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCC-----CCCCeEEEE
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKW-----FTDTSIILF 175 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~-----~~~~piil~ 175 (262)
...+-+.|+++.-. .........++.+|+|+..+. .++..+...++.+..... .....+.++
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~-----------~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 179 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-----------SSVRDSDRILGILASKSRRAENGEEPIKEHLL 179 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH-----------HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh-----------hHHHHHHHHHHHHHHhccccccccCCcceEEE
Confidence 57788999998543 345556678999999998764 555665555555433210 123577899
Q ss_pred eeCCchh
Q psy6623 176 LNKKDLF 182 (262)
Q Consensus 176 ~NK~Dl~ 182 (262)
+|+.+-.
T Consensus 180 ~N~~~~~ 186 (260)
T 3q9l_A 180 LTRYNPG 186 (260)
T ss_dssp EEEECHH
T ss_pred EecCCcc
Confidence 9999854
No 231
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=44.08 E-value=47 Score=26.30 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+-+.|+++.-.. ........++.+|+++..+. .++......++.+... ......+-+++|+.+
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-----------~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~ 183 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSL-----------QSLRRAGQLLKLCKEF-EKPISRIEIILNRAD 183 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSH-----------HHHHHHHHHHHHHHTC-SSCCSCEEEEEESTT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcH-----------HHHHHHHHHHHHHHHh-CCCccceEEEEecCC
Confidence 466889999886432 33445678999999988764 5556665555555432 222456788899998
Q ss_pred h
Q psy6623 181 L 181 (262)
Q Consensus 181 l 181 (262)
-
T Consensus 184 ~ 184 (245)
T 3ea0_A 184 T 184 (245)
T ss_dssp S
T ss_pred C
Confidence 4
No 232
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=43.22 E-value=60 Score=26.24 Aligned_cols=65 Identities=6% Similarity=-0.030 Sum_probs=41.5
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
...+-|.|+++.-. ......+..++.+|+++..+. .++.......+.+... -.+.++.+|+|+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-----------~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-----------WAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-----------THHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-----------HHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 46688999988543 234455667999999998763 4454444444433322 12467789999984
No 233
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=40.93 E-value=17 Score=31.37 Aligned_cols=31 Identities=71% Similarity=1.040 Sum_probs=26.0
Q ss_pred ceeeeeehhhHHHhhccCCCccccCCCCCCC
Q psy6623 229 SIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259 (262)
Q Consensus 229 ~~I~~~f~~~lL~~~i~~~~l~~~~~~~~~~ 259 (262)
.-|-.+.+.+++.+++.++++.++||+++|+
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~ 266 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGP 266 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSC
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCC
Confidence 4455566679999999999999999999996
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=40.73 E-value=54 Score=29.41 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=37.2
Q ss_pred ccceeeeecCCccc--cch-----hhh-ccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE
Q psy6623 101 NLNFKLFDVGGQRS--ERK-----KWI-HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~--~r~-----~w~-~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi 172 (262)
+..+-+.||+|.-. ... +.. .-.-..+.+++|+|.+. .....+....|...+ .+.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~----------gq~a~~~a~~f~~~~-------~~~ 241 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI----------GQKAYDLASRFHQAS-------PIG 241 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG----------GGGGHHHHHHHHHHC-------SSE
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc----------chHHHHHHHHHhccc-------CCc
Confidence 46678999999533 110 000 00124689999999886 222333334444332 245
Q ss_pred EEEeeCCchh
Q psy6623 173 ILFLNKKDLF 182 (262)
Q Consensus 173 il~~NK~Dl~ 182 (262)
.|++||.|..
T Consensus 242 gVIlTKlD~~ 251 (433)
T 3kl4_A 242 SVIITKMDGT 251 (433)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeccccc
Confidence 6789999964
No 235
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=40.55 E-value=28 Score=28.13 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=41.1
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCCc
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~D 180 (262)
+..+-|.|+++.-. .........++.+|+|+..+. .++......++.+... ....+-+++|+.+
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-----------~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~ 173 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-----------SSITDGLKTKIVAERL---GTKVLGVVVNRIT 173 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-----------HHHHHHHHHHHHHHHH---TCEEEEEEEEEEC
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-----------hHHHHHHHHHHHHHhc---CCCeeEEEEccCC
Confidence 46788999997543 233445567899999987653 3444444444444322 2245668899988
Q ss_pred hh
Q psy6623 181 LF 182 (262)
Q Consensus 181 l~ 182 (262)
-.
T Consensus 174 ~~ 175 (263)
T 1hyq_A 174 TL 175 (263)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 236
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=34.07 E-value=51 Score=30.93 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=38.8
Q ss_pred ccCCCEEEEeeeccccccccccC--cccccHHHHHHHHHHHHhC----CCCCCCeEEEEeeCC
Q psy6623 123 FEDVTAIIFCVAMSEYDQVLHED--ETTNRMQESLKLFDSICNN----KWFTDTSIILFLNKK 179 (262)
Q Consensus 123 f~~~~~iIfv~dls~~d~~~~e~--~~~~~l~e~~~~~~~i~~~----~~~~~~piil~~NK~ 179 (262)
|.+-+++||++|+|. .+..++ ...++|..+++....+++. .....+.+|++++..
T Consensus 32 ~~~ke~ivf~IDvS~--SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~ 92 (609)
T 1jey_A 32 YSGRDSLIFLVDASK--AMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK 92 (609)
T ss_dssp --CEEEEEEEEECSG--GGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred ccCceEEEEEEECCH--HHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCC
Confidence 466789999999997 333333 2467899999988888763 233567888888775
No 237
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=31.10 E-value=64 Score=26.00 Aligned_cols=71 Identities=10% Similarity=0.155 Sum_probs=41.9
Q ss_pred eccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE-EEeeC
Q psy6623 100 KNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII-LFLNK 178 (262)
Q Consensus 100 ~~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii-l~~NK 178 (262)
.+..+-|.|+++.-.. .....+..++.+|+++..+..+ ...+...++.++.+... ...+.+++ +++|+
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~ 178 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYA--------LEGVAGLLATLEEVRAG-LNPRLRLLGILVTM 178 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHH--------HHHHHHHHHHHHHHHHH-TCTTCEEEEEEEES
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHH--------HHHHHHHHHHHHHHHHH-hCCCceEEEEEEEe
Confidence 4567889999986432 2334456789999999876421 22233334444443221 12356664 88999
Q ss_pred Cch
Q psy6623 179 KDL 181 (262)
Q Consensus 179 ~Dl 181 (262)
.|-
T Consensus 179 ~~~ 181 (257)
T 1wcv_1 179 YDG 181 (257)
T ss_dssp BCT
T ss_pred ECC
Confidence 875
No 238
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=29.49 E-value=74 Score=26.15 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=41.2
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeE-EEEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI-ILFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pi-il~~NK~ 179 (262)
+..+-|.|+++.-... ....+..++.+|+++..+..+ ...+...++.++.+... ...+.++ -+++|+.
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEES--------TNNIQNYISYLIDLQEQ-FNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCC--------HHHHHHHHHHHHHHHHH-HCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHH--------HHHHHHHHHHHHHHHHH-hCCCCeEEEEEEEEE
Confidence 4678899998865432 222344699999998876421 23334444444443321 1124564 4889999
Q ss_pred chh
Q psy6623 180 DLF 182 (262)
Q Consensus 180 Dl~ 182 (262)
|..
T Consensus 223 ~~~ 225 (298)
T 2oze_A 223 DTD 225 (298)
T ss_dssp CTT
T ss_pred CCC
Confidence 853
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.17 E-value=1.2e+02 Score=27.15 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=24.1
Q ss_pred ccceeeeecCCccccch-hh-----hccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSERK-KW-----IHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~-~w-----~~~f~~~~~iIfv~dls~ 137 (262)
+..+.|.||+|.-.... .. ......++.+++|+|.+.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecch
Confidence 56789999999643211 11 112346889999999764
No 240
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=29.05 E-value=77 Score=29.33 Aligned_cols=51 Identities=10% Similarity=0.241 Sum_probs=36.1
Q ss_pred CEEEEeeeccccccccccCc-ccccHHHHHHHHHHHHhC----CCCCCCeEEEEeeCC
Q psy6623 127 TAIIFCVAMSEYDQVLHEDE-TTNRMQESLKLFDSICNN----KWFTDTSIILFLNKK 179 (262)
Q Consensus 127 ~~iIfv~dls~~d~~~~e~~-~~~~l~e~~~~~~~i~~~----~~~~~~piil~~NK~ 179 (262)
.+++|++|+|.. +..++. ..++|..+++....+++. ..-..+.+|+++.+.
T Consensus 8 e~iv~~iDvS~S--M~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~ 63 (565)
T 1jey_B 8 AAVVLCMDVGFT--MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDG 63 (565)
T ss_dssp EEEEEEEECCGG--GGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECChH--hcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCC
Confidence 689999999973 323322 357999998888888872 333567888888664
No 241
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.98 E-value=58 Score=29.20 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.8
Q ss_pred CCCeEEEEeeCCchhh
Q psy6623 168 TDTSIILFLNKKDLFE 183 (262)
Q Consensus 168 ~~~piil~~NK~Dl~~ 183 (262)
.++|+|+|.||+|.+.
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 4789999999999864
No 242
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=27.31 E-value=83 Score=25.88 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=39.0
Q ss_pred ccceeeeecCCccccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEE-EEeeCC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSII-LFLNKK 179 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~pii-l~~NK~ 179 (262)
...+-|.|+++.-... -.......++++|+|+.... .+........+.+-+ .+.+++ +|+|+.
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-----------~~~~~~~~~~~~l~~----~~~~~~GvVlN~~ 254 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-----------NNKDEVKKGKELIEA----TGAKLLGVVLNRM 254 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-----------CCHHHHHHHHHHHHT----TTCEEEEEEEEEE
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-----------CcHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 3567899998753221 11123356889999998764 444444444444432 245555 889999
Q ss_pred chh
Q psy6623 180 DLF 182 (262)
Q Consensus 180 Dl~ 182 (262)
|..
T Consensus 255 ~~~ 257 (271)
T 3bfv_A 255 PKD 257 (271)
T ss_dssp CC-
T ss_pred cCC
Confidence 853
No 243
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=24.69 E-value=35 Score=29.65 Aligned_cols=32 Identities=56% Similarity=0.907 Sum_probs=25.9
Q ss_pred ceeeeeehhhHHHhhccCCCccccCCCCCCCC
Q psy6623 229 SIILFLNKKDLFEEKIKKSPLTICFPEYAGPW 260 (262)
Q Consensus 229 ~~I~~~f~~~lL~~~i~~~~l~~~~~~~~~~~ 260 (262)
.-|-.+.+.+++.+++..+++..|||++.|+.
T Consensus 230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~ 261 (340)
T 4fid_A 230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGD 261 (340)
T ss_dssp EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTT
T ss_pred eEEEEEECchhhhhhcCcchHHHhhhhhcCCC
Confidence 34555566699999999999999999999863
No 244
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=24.23 E-value=47 Score=28.92 Aligned_cols=32 Identities=50% Similarity=0.767 Sum_probs=26.2
Q ss_pred cceeeeeehhhHHHhhccCCCccccCCCCCCC
Q psy6623 228 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGP 259 (262)
Q Consensus 228 ~~~I~~~f~~~lL~~~i~~~~l~~~~~~~~~~ 259 (262)
..-|-.+.+.+++.+++..+++..|||++.|+
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~ 300 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 300 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCC
Confidence 34455666679999999999999999999885
No 245
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=23.84 E-value=1.3e+02 Score=23.10 Aligned_cols=53 Identities=15% Similarity=0.327 Sum_probs=32.8
Q ss_pred CCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEeeCC
Q psy6623 125 DVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKK 179 (262)
Q Consensus 125 ~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~NK~ 179 (262)
...-++||+|.|. .+..++...+++..++..+..++....-..+.++.+.+..
T Consensus 10 ~~~~iv~vlD~Sg--SM~~~d~~~~r~~~ak~~~~~~~~~~~~~~v~lv~F~~~~ 62 (218)
T 3ibs_A 10 KGVEVIIALDISN--SMLAQDVQPSRLEKAKRLISRLVDELDNDKVGMIVFAGDA 62 (218)
T ss_dssp CCCEEEEEEECSG--GGGCCSSSSCHHHHHHHHHHHHHHTCSSCEEEEEEESSSE
T ss_pred CCCcEEEEEECCc--CcccccCCcCHHHHHHHHHHHHHHhCCCCeEEEEEECCCc
Confidence 3445788999886 2222233346888899988888865433345556555443
No 246
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=23.62 E-value=1.4e+02 Score=23.95 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=37.0
Q ss_pred ccceeeeecCCccccchhhhc-cccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCe-EEEEeeC
Q psy6623 101 NLNFKLFDVGGQRSERKKWIH-CFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTS-IILFLNK 178 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~~w~~-~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~p-iil~~NK 178 (262)
+..+-|.|++|.-........ ....++.+|+++..+. .++.......+.+.......+.+ +-+++|+
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~-----------~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~ 183 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM-----------MALYAANNISKGIQKYAKSGGVRLGGIICNS 183 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH-----------HHHHHHHHHHHHHHHHBTTBBCEEEEEEEEC
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch-----------hhHHHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 466889999885432211111 1146899999887664 34444433333332211112344 4678899
Q ss_pred Cc
Q psy6623 179 KD 180 (262)
Q Consensus 179 ~D 180 (262)
.+
T Consensus 184 ~~ 185 (269)
T 1cp2_A 184 RK 185 (269)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 247
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=22.02 E-value=74 Score=29.77 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=39.0
Q ss_pred cceeeeecCCc--------c-----ccchhhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCC
Q psy6623 102 LNFKLFDVGGQ--------R-----SERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFT 168 (262)
Q Consensus 102 ~~~~i~D~~Gq--------~-----~~r~~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~ 168 (262)
-.+.+.|.+|- . ..+.+-..|.....++++++...+-|. .-.+++.+.+.+.. .
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~---------a~~~~l~la~~v~~----~ 213 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI---------ATTEALSMAQEVDP----E 213 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT---------TTCHHHHHHHHHCS----S
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh---------ccHHHHHHHHHHhh----c
Confidence 45788897752 1 122233445555555655555444221 12345566655532 3
Q ss_pred CCeEEEEeeCCchhh
Q psy6623 169 DTSIILFLNKKDLFE 183 (262)
Q Consensus 169 ~~piil~~NK~Dl~~ 183 (262)
+.+.++|+||.|+..
T Consensus 214 g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 214 GDRTIGILTKPDLVD 228 (608)
T ss_dssp CCSEEEEEECGGGSS
T ss_pred CCceEEEecchhhcC
Confidence 568899999999875
No 248
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=21.83 E-value=80 Score=24.67 Aligned_cols=53 Identities=4% Similarity=0.022 Sum_probs=34.5
Q ss_pred hhhccccCCCEEEEeeeccccccccccCcccccHHHHHHHHHHHHhCCCCCCCeEEEEee
Q psy6623 118 KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLN 177 (262)
Q Consensus 118 ~w~~~f~~~~~iIfv~dls~~d~~~~e~~~~~~l~e~~~~~~~i~~~~~~~~~piil~~N 177 (262)
.|..-...+|++|++...=++. -...|..+++|+........+.+.|+.+++.
T Consensus 60 ~l~~~i~~aD~~ii~tPeYn~s-------~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~ 112 (190)
T 3u7r_A 60 RLKDRIEHSDAVLAITPEYNRS-------YPGMIKNAIDWATRPYGQNSWKGKPAAVIGT 112 (190)
T ss_dssp HHHHHHHTSSEEEEECCCBTTB-------CCHHHHHHHHHHHCSTTCCTTTTCEEEEEEE
T ss_pred HHHHHHHhCCcEEEechhhccc-------CCHHHHHHHHHhcccccCCccCCCEEEEEEe
Confidence 4556678999999998754421 1345566666654333345678899998865
No 249
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.66 E-value=1.6e+02 Score=26.17 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=22.8
Q ss_pred ccceeeeecCCccccch--hh----hccccCCCEEEEeeeccc
Q psy6623 101 NLNFKLFDVGGQRSERK--KW----IHCFEDVTAIIFCVAMSE 137 (262)
Q Consensus 101 ~~~~~i~D~~Gq~~~r~--~w----~~~f~~~~~iIfv~dls~ 137 (262)
+..+-|.||+|.-.... .. ..-.-.++.+++|+|.+.
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t 222 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 45688999999643211 10 011125788999999764
Done!