RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6623
(262 letters)
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 251 bits (643), Expect = 5e-83
Identities = 137/192 (71%), Positives = 154/192 (80%)
Query: 7 DTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDD 66
D V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y+L+D
Sbjct: 98 ARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLND 157
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDV 126
LDR+ Y PT+QD+LRTRVKTTGIVE HF+FK+L+FK+FDVGGQRSERKKWIHCFE V
Sbjct: 158 LDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGV 217
Query: 127 TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 186
TAIIFCVA+S+YD VL EDE NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKI
Sbjct: 218 TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 277
Query: 187 KKSPLTICFPEY 198
KKSPLTIC+PEY
Sbjct: 278 KKSPLTICYPEY 289
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 250 bits (640), Expect = 5e-82
Identities = 97/200 (48%), Positives = 124/200 (62%), Gaps = 2/200 (1%)
Query: 13 MVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGA 72
+ + + F E K LW D GV+ C+ RSNEYQL D A+YFLD +D +
Sbjct: 128 VDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ 187
Query: 73 KEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC 132
+Y P++QD+LR RV T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF
Sbjct: 188 DDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV 247
Query: 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK--KSP 190
VA S Y+ V+ ED TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS
Sbjct: 248 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSK 307
Query: 191 LTICFPEYAGKRPGERNRMQ 210
+ FPE+A E +
Sbjct: 308 IEDYFPEFARYTTPEDATPE 327
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 247 bits (631), Expect = 1e-81
Identities = 102/189 (53%), Positives = 130/189 (68%)
Query: 13 MVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGA 72
+E F + A+K LW D G+QEC+ R EYQL+DS KY+L+DLDR+
Sbjct: 78 AQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD 137
Query: 73 KEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC 132
Y PT+QD+LR RV TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F
Sbjct: 138 PSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL 197
Query: 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLT 192
VA+SEYDQVL E + NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L
Sbjct: 198 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLV 257
Query: 193 ICFPEYAGK 201
FPEY G
Sbjct: 258 DYFPEYDGP 266
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 246 bits (628), Expect = 1e-80
Identities = 91/188 (48%), Positives = 124/188 (65%)
Query: 16 DVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEY 75
+ + + L A++ LW DSG+Q + R E+QL +S KYFLD+LD+LG +Y
Sbjct: 115 PMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDY 174
Query: 76 QPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAM 135
P++QDIL R T GI E F KN+ FK+ DVGGQRSERK+W CF+ VT+I+F V+
Sbjct: 175 IPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSS 234
Query: 136 SEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF 195
SE+DQVL ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EEK++ + F
Sbjct: 235 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYF 294
Query: 196 PEYAGKRP 203
E+ G
Sbjct: 295 LEFEGDPH 302
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 243 bits (621), Expect = 8e-80
Identities = 88/197 (44%), Positives = 122/197 (61%), Gaps = 8/197 (4%)
Query: 19 QRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPT 78
D ++++ ++ LW D +QE R NE Q+ D KY +++L RL Y PT
Sbjct: 94 GGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPT 153
Query: 79 EQDILRTRVKTTGIVEVHFSFKNLN------FKLFDVGGQRSERKKWIHCFEDVTAIIFC 132
++D+L RV+TTG+VE+ FS N ++LFDVGGQR+ER+KWIH FE VTA+IFC
Sbjct: 154 KEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFC 213
Query: 133 VAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLT 192
A+SEYDQ L EDE NRM E+ +LFD + F TS +LFLNK D+FE+K+ PL
Sbjct: 214 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLN 273
Query: 193 IC--FPEYAGKRPGERN 207
+C F +Y G++
Sbjct: 274 VCEWFRDYQPVSSGKQE 290
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 59.6 bits (145), Expect = 4e-11
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ + F FD+GG R+ W + + I+F V D R+ ES
Sbjct: 64 LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV-----------DCADHERLLESK 112
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ DS+ ++ + I++ NK D
Sbjct: 113 EELDSLMTDETIANVPILILGNKIDR 138
Score = 26.5 bits (59), Expect = 8.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R+ ES + DS+ ++ + I++ NK D
Sbjct: 105 HERLLESKEELDSLMTDETIANVPILILGNKIDR 138
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 59.1 bits (144), Expect = 6e-11
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ N+ F FD+GG R+ W F +V I+F V D R E+
Sbjct: 62 LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV-----------DAADPERFDEAR 110
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
D++ N D ++ NK D
Sbjct: 111 VELDALFNIAELKDVPFVILGNKIDA 136
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 57.6 bits (140), Expect = 2e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
N F ++D+GGQ S R W + + +I V D T R+ +
Sbjct: 60 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----------DSTDRERISVTR 108
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + ++ +++F NK+D+
Sbjct: 109 EELYKMLAHEDLRKAGLLIFANKQDV 134
Score = 27.6 bits (62), Expect = 2.8
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R R+ + + + ++ +++F NK+D+
Sbjct: 101 RERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 56.4 bits (137), Expect = 4e-10
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
++KNL F+++D+GG S R W + + A+I+ V D +R+ S
Sbjct: 46 VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV-----------DSCDRDRIGISK 94
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
++ + +++F NK+D+
Sbjct: 95 SELVAMLEEEELRKAILVVFANKQDM 120
Score = 26.4 bits (59), Expect = 8.0
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R+R+ S ++ + +++F NK+D+
Sbjct: 87 RDRIGISKSELVAMLEEEELRKAILVVFANKQDM 120
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 56.9 bits (138), Expect = 4e-10
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ ++DVGGQ+S R W + FE +I+ V D RMQ+
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV-----------DSADRQRMQDCQ 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ S+ + ++++F NK+DL
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131
Score = 26.8 bits (60), Expect = 5.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R RMQ+ + S+ + ++++F NK+DL
Sbjct: 98 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 56.9 bits (138), Expect = 4e-10
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+KN++F+++D+GGQ R W F D A+I+ V D + RM +
Sbjct: 61 LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----DSTDRD-----RMGVAKH 110
Query: 157 LFDSICNNKWFTDTSIILFLNKKDL 181
++ + + +++F NK+DL
Sbjct: 111 ELYALLDEDELRKSLLLIFANKQDL 135
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 56.5 bits (137), Expect = 4e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
N F ++D+GGQ S R W + + +I V D T R+ +
Sbjct: 55 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----------DSTDRERISVTR 103
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + ++ +++F NK+D+
Sbjct: 104 EELYKMLAHEDLRKAGLLIFANKQDV 129
Score = 27.2 bits (61), Expect = 4.0
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R R+ + + + ++ +++F NK+D+
Sbjct: 96 RERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 56.4 bits (137), Expect = 5e-10
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLK 156
+ N+ KL+D+GGQ R W V+AI++ V D E +++ S
Sbjct: 62 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV-----DAADQE-----KIEASKN 111
Query: 157 LFDSICNNKWFTDTSIILFLNKKDL 181
++ + +++ NK+DL
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDL 136
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 55.7 bits (135), Expect = 6e-10
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+KN++F ++DVGGQ R W H F++ +IF V D R+ E+
Sbjct: 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVNEAR 87
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + D +++F NK+DL
Sbjct: 88 EELMRMLAEDELRDAVLLVFANKQDL 113
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R R+ E+ + + D +++F NK+DL
Sbjct: 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 56.1 bits (136), Expect = 7e-10
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
S+KNL ++D+GGQ S R W + D A+IF V D T +RM +
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV-----------DSTDKDRMSTAS 105
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
K + + D ++++F NK+D
Sbjct: 106 KELHLMLQEEELQDAALLVFANKQDQ 131
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 55.7 bits (135), Expect = 8e-10
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+ ++D+GGQR R W FE+ +I+ + D R +E+
Sbjct: 55 VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI-----------DSADRKRFEETG 103
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + + + +++F NK+DL
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDL 129
Score = 26.4 bits (59), Expect = 8.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R R +E+ + + + + +++F NK+DL
Sbjct: 96 RKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 54.6 bits (132), Expect = 2e-09
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+KN+ F ++DVGGQ R W H F++ +IF V D R+QES
Sbjct: 68 VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVQESA 116
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ D +++F NK+D+
Sbjct: 117 DELQKMLQEDELRDAVLLVFANKQDM 142
Score = 26.5 bits (59), Expect = 8.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R R+QES + D +++F NK+D+
Sbjct: 109 RERVQESADELQKMLQEDELRDAVLLVFANKQDM 142
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 56.4 bits (136), Expect = 2e-09
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
++KN+ F ++DVGGQ R W H + +IF V D +R+ E+
Sbjct: 361 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV-----------DCADRDRIDEAR 409
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ I N++ D I++F NK+DL
Sbjct: 410 QELHRIINDREMRDAIILIFANKQDL 435
Score = 27.9 bits (62), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R+R+ E+ + I N++ D I++F NK+DL
Sbjct: 402 RDRIDEARQELHRIINDREMRDAIILIFANKQDL 435
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 55.3 bits (133), Expect = 4e-09
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDET-TNRMQESL 155
+KN++F ++DVGGQ R W H F++ +IF V D R+ E+
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVNEAR 252
Query: 156 KLFDSICNNKWFTDTSIILFLNKKDL 181
+ + D +++F NK+DL
Sbjct: 253 EELMRMLAEDELRDAVLLVFANKQDL 278
Score = 27.2 bits (60), Expect = 6.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 239
R R+ E+ + + D +++F NK+DL
Sbjct: 245 RERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 53.4 bits (129), Expect = 7e-09
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 28/95 (29%)
Query: 97 FSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCV----------AMSEYDQVLHEDE 146
F +L+F +FD+ GQ R W H +++ AIIF + A E D +L+ +
Sbjct: 62 FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 121
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDL 181
+R I+ F NK DL
Sbjct: 122 IKHR------------------RIPILFFANKMDL 138
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 49.4 bits (118), Expect = 2e-07
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 24/128 (18%)
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHF--------SFKNLNFKLFDVGGQRSERKK 118
L + +K + + +++ + + F F L+ V GQ
Sbjct: 31 LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNN-----KWFTDTSII 173
V I+F D NR++ + + ++ N D I+
Sbjct: 91 RKLILRGVDGIVFVA-----------DSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139
Query: 174 LFLNKKDL 181
+ +NK+DL
Sbjct: 140 IQVNKRDL 147
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 47.4 bits (112), Expect = 1e-06
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 26/181 (14%)
Query: 1 MNGTSLDTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSA 60
M G L+ + +V ++ SEEL + + G +QLN+
Sbjct: 21 MFGPGLEELNTSLVLSLM--------SSEELCPTAG---LPQRQIDGIGSGVNFQLNNQH 69
Query: 61 KYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWI 120
K+ + L KE R R + V+ F N G + S +
Sbjct: 70 KFNILILYSTTRKE---------RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQ 120
Query: 121 HCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKD 180
E V I+ + + +DE ++ M + F S ++L +
Sbjct: 121 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG------RPLLVLSCISQG 174
Query: 181 L 181
Sbjct: 175 D 175
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 43.8 bits (103), Expect = 1e-05
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 89 TTGIVEVHFSFK-NLNFKLFDVGGQRSERKKWI---HCFEDVTAIIFCVAMSEYDQVLHE 144
T I + S +NF+++D GQ F A+I+ + D
Sbjct: 55 TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI-----DAQDDY 109
Query: 145 DETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187
E R+ ++ + D + +F++K D + K
Sbjct: 110 MEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSDDHK 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 43.2 bits (102), Expect = 2e-05
Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 29/133 (21%)
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDV 126
L L +PT V + + + L D G R K +
Sbjct: 65 LTLLTTDSVRPT--------VVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115
Query: 127 T----AIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSI---CNNKWFTDTSIILFLNKK 179
+IF V S D ++ + + I + I++ NK
Sbjct: 116 AKFVKGLIFMVD-STVDP--------KKLTTTAEFLVDILSITESSCENGIDILIACNKS 166
Query: 180 DLF----EEKIKK 188
+LF KIK
Sbjct: 167 ELFTARPPSKIKD 179
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 42.4 bits (100), Expect = 5e-05
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 98 SFKNLNFKLFDVGGQRSERKKWIHCFEDVT----AIIFCVAMSEYDQVLHEDETTNRMQE 153
+ L D G R K + +IF V S D ++
Sbjct: 51 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD-STVDP--------KKLTT 101
Query: 154 SLKLFDSI---CNNKWFTDTSIILFLNKKDLF----EEKIKK 188
+ + I + I++ NK +LF KIK
Sbjct: 102 TAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 51/273 (18%), Positives = 80/273 (29%), Gaps = 113/273 (41%)
Query: 21 MEDT-EPFSEELLSAMKRL-WIDSGV--QECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQ 76
D+ E F + A+ L +I GV E + ++ L S L+D E
Sbjct: 285 ETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTS---LPPSI---LEDSLENN--EGV 334
Query: 77 PT-------------EQDILRTRVKTTGIVEVHFSFKN----------------LNFKL- 106
P+ + + +T +V S N LN L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 107 -------FDVGGQR----SERK-KWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES 154
D Q SERK K+ + F V + F H ++ + +
Sbjct: 395 KAKAPSGLD---QSRIPFSERKLKFSNRFLPVAS-PF-----------H----SHLLVPA 435
Query: 155 LKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICFPEYA---GKRPGERNRM 209
L + KDL + + + I P Y G R +
Sbjct: 436 SDLIN-------------------KDLVKNNVSFNAKDIQI--PVYDTFDGSDL--RV-L 471
Query: 210 QESL--KLFDSICNN--KW-----FTDTSIILF 233
S+ ++ D I KW F T I+ F
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 38.1 bits (88), Expect = 0.002
Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 49/172 (28%)
Query: 43 GVQECFGRSNE-YQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKN 101
G QE G + Y+ + +A+ + D Y + DI+ + +HF
Sbjct: 1625 GSQEQ-GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN---LTIHF---- 1676
Query: 102 LNFKLFDVGGQRSERKKWIHCFEDVTAIIF---CVAMSEYDQVLHE-DETTNRM-----Q 152
GG++ +R I E+ +A+IF + +++ E +E + +
Sbjct: 1677 --------GGEKGKR---IR--ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 153 ESLKLFDSICNNKWFTD-TSIILFLNKKDLFEEKIKK---SPLTICFPEYAG 200
L T T L L +K FE+ +K P F AG
Sbjct: 1724 GLLSA----------TQFTQPALTLMEKAAFED-LKSKGLIPADATF---AG 1761
Score = 28.9 bits (64), Expect = 2.1
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 156 KLFDSICNNKWFTDT---SIILFLNKKDLFEEKIKKSP--LTICFPEYAGKRPGER-NRM 209
+++ F DT SI+ + + +P LTI F GKR E + M
Sbjct: 1644 DVWNRAD--NHFKDTYGFSIL----------DIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 210 QESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICF--PE 255
+F++I + K L + +F+E I + + F +
Sbjct: 1692 -----IFETIVDGK----------LKTEKIFKE-INEHSTSYTFRSEK 1723
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 34/132 (25%)
Query: 107 FDVGGQRSERKKWIHCF-------------EDVTAIIFCVAMSEYDQVLHEDETTNRMQE 153
F+ G + + K + F +D+ I + E D ++ + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSK---DAVSG 63
Query: 154 SLKLFDSICNN-----KWFTDTSIIL---FLNKKDLFEEKIKKSPLTICFPEYAGKRPGE 205
+L+LF ++ + + F + + + FL + E+ + S +T + E
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQ------- 115
Query: 206 RNRMQESLKLFD 217
R+R+ ++F
Sbjct: 116 RDRLYNDNQVFA 127
Score = 38.7 bits (89), Expect = 0.002
Identities = 47/298 (15%), Positives = 80/298 (26%), Gaps = 98/298 (32%)
Query: 6 LDTTDAKMVFDVIQ-------RMED-----TEPFSEELLSAMKRLWIDSGVQE-----CF 48
L TT K V D + ++ T + LL ++D Q+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLT 324
Query: 49 GRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFD 108
N +L+ A+ D L ++ D L T +++ S L
Sbjct: 325 T--NPRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIES--------SLNVLEP---- 368
Query: 109 VGGQRSERKKWIHCFEDVTAIIFCVAMSEYD-----QVL----HEDETTNRMQESLKLFD 159
+E +K F+ ++ +F +L + ++ M KL
Sbjct: 369 -----AEYRK---MFDRLS--VF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 160 SICNNKWFTDTSI----ILFLNKKDLFEEK------IKKSPLTICFPEYAGKRPGERN-- 207
K +++I I K L E + + F P
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 208 -----------RMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFP 254
E + LF F D FL E+KI+
Sbjct: 474 YSHIGHHLKNIEHPERMTLF-----RMVFLDFR---FL------EQKIRHDSTAWNAS 517
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 38.6 bits (90), Expect = 9e-04
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 100 KNLNFKLFDVGGQRSERKK-WIHCFEDVTAIIFCVAMSEYDQVLHE--DETTNRMQESLK 156
+ + L D+ G S R + A++F V + + + + + + + +S+
Sbjct: 52 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA 111
Query: 157 LFDSICNNKWFTDTSIILFLNKKDLF 182
L +S S+++ NK+D+
Sbjct: 112 LKNSP---------SLLIACNKQDIA 128
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 38.1 bits (88), Expect = 0.002
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 89 TTGIVEVHFSF-KNLNFKLFDVGGQRS-----ERKKWIHCFEDVTAIIFCVAMSEYDQVL 142
T + H F N+ L+D GGQ K+ H F+ V +I + +
Sbjct: 38 TIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV-- 95
Query: 143 HEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK 188
+ ++LK D I + L+K DL + ++
Sbjct: 96 --LKDIEIFAKALKQLRKYS-----PDAKIFVLLHKMDLVQLDKRE 134
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 36.2 bits (83), Expect = 0.008
Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWI---HCFEDVTAIIFCVAMSEYDQVLHED 145
T+ HFS ++ + ++ GQ + + F+ V A+++ + D
Sbjct: 34 TSNPSLEHFST-LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI-----DSQDEYI 87
Query: 146 ETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK 187
+ ++ + +I + ++K D E K
Sbjct: 88 NAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFK 124
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 35.5 bits (81), Expect = 0.012
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 53 EYQLNDSAKYFLDDLDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQ 112
+QLN+ K+ + L Y T ++ R R + T V FS N G +
Sbjct: 147 NFQLNNQHKFNILIL-------YSTTRKERDRAREEHTSAVNKMFSRHNEGDD--QQGSR 197
Query: 113 RSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSI 172
S + E V I+ + + +DE ++ M + F S +
Sbjct: 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG------RPLL 251
Query: 173 ILFLNKKDL 181
+L +
Sbjct: 252 VLSCISQGD 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.012
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 144 EDETTNRMQESLKLF--DS 160
E + ++Q SLKL+ DS
Sbjct: 18 EKQALKKLQASLKLYADDS 36
Score = 32.2 bits (72), Expect = 0.074
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 205 ERN---RMQESLKLF--DS 218
E+ ++Q SLKL+ DS
Sbjct: 18 EKQALKKLQASLKLYADDS 36
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside
6-adenyltransferase, PSI-2, structural genomics; 2.65A
{Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Length = 294
Score = 32.7 bits (74), Expect = 0.086
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 20/134 (14%)
Query: 117 KKWIHCFEDVTAIIFCVAMSEYDQ-------VLHEDETTNRMQESLKLFDSICNNKWFTD 169
+W+ F + M + + E N++ +L + D
Sbjct: 61 DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFEDGNKLDLTLIPIREAEDYFANND 120
Query: 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS 229
+ + L+K K+ + +Y KRP R FD CN W T
Sbjct: 121 GLVKVLLDKDSFINYKVTPND-----RQYWIKRPTARE--------FDDCCNEFWMVSTY 167
Query: 230 IILFLNKKDLFEEK 243
++ L + ++
Sbjct: 168 VVKGLARNEILFAI 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,933,586
Number of extensions: 219601
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 64
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)