RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6623
(262 letters)
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 121
Score = 102 bits (256), Expect = 2e-28
Identities = 40/80 (50%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DA+ + + +E+ +E+ ++RLW DSG+Q CF R++EYQLNDSA Y+L DL+R
Sbjct: 43 DARKLMHMADTIEEG-TMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLER 101
Query: 70 LGAKEYQPTEQDILRTRVKT 89
L Y PTEQD+LR+RVKT
Sbjct: 102 LVTPGYVPTEQDVLRSRVKT 121
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 101 bits (253), Expect = 5e-28
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
DA+ +F V+ + + EL +KRLW DSGVQ CF RS EYQLNDSA Y+L+DLDR
Sbjct: 43 DARQLF-VLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDR 101
Query: 70 LGAKEYQPTEQDILRTRVKT 89
+ Y PT+QD+LRTRVKT
Sbjct: 102 IAQPNYIPTQQDVLRTRVKT 121
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 92.7 bits (230), Expect = 1e-24
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 13 MVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGA 72
M F+ + + + A+ LW DSG++E F R +E+QL +S KYFLD+LDR+G
Sbjct: 48 MAFENKAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ 107
Query: 73 KEYQPTEQDILRTR 86
Y P++QDIL R
Sbjct: 108 LNYFPSKQDILLAR 121
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 92.3 bits (229), Expect = 2e-24
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 22 EDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQD 81
+ L A++ LW DSG+Q + R E+QL +S KYFLD+LD+LG +Y P++QD
Sbjct: 61 MVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQD 120
Query: 82 ILRTR 86
IL R
Sbjct: 121 ILLAR 125
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 91.4 bits (227), Expect = 3e-24
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 10 DAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDDLDR 69
+ V+ + F E K LW D GV+ C+ RSNEYQL D A+YFLD +D
Sbjct: 40 RVDYILSVMNVPDFD--FPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDV 97
Query: 70 LGAKEYQPTEQDILRTR 86
+ +Y P++QD+LR R
Sbjct: 98 IKQDDYVPSDQDLLRCR 114
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 91.1 bits (226), Expect = 5e-24
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 7 DTTDAKMVFDVIQRMEDTEPFSEELLSAMKRLWIDSGVQECFGRSNEYQLNDSAKYFLDD 66
+ A++V +V +E F + A+K LW D G+QEC+ R EYQL+DS KY+L+D
Sbjct: 40 NKAHAQLVREV--DVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLND 97
Query: 67 LDRLGAKEYQPTEQDILRTR 86
LDR+ Y PT+QD+LR R
Sbjct: 98 LDRVADPSYLPTQQDVLRVR 117
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 92.9 bits (230), Expect = 1e-23
Identities = 66/116 (56%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V T+GI E F +NF +FDVGGQR ER+KWI CF DVTAIIF VA S Y+ V+ ED
Sbjct: 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK--KSPLTICFPEYAG 200
TNR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 92 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFAR 147
Score = 57.5 bits (138), Expect = 1e-10
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 206 RNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIK--KSPLTICFPEYAGP 259
NR+QE+L LF SI NN+W S+ILFLNK+DL EK+ KS + FPE+A
Sbjct: 93 TNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 148
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 79.2 bits (194), Expect = 1e-18
Identities = 65/142 (45%), Positives = 92/142 (64%)
Query: 82 ILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQV 141
I+ + T GI E F KN+ FK+ DVGGQRSERK+W CF+ VT+I+F V+ SE+DQV
Sbjct: 24 IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQV 83
Query: 142 LHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGK 201
L ED TNR+ ESL +F++I NN+ F++ SIILFLNK DL EEK++ + F E+ G
Sbjct: 84 LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 143
Query: 202 RPGERNRMQESLKLFDSICNNK 223
R+ + ++ F ++
Sbjct: 144 PHCLRDVQKFLVECFRGKRRDQ 165
Score = 46.8 bits (110), Expect = 5e-07
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 205 ERNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGPWYN 262
+ NR+ ESL +F++I NN+ F++ SIILFLNK DL EEK++ + F E+ G +
Sbjct: 89 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 146
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 74.6 bits (182), Expect = 8e-17
Identities = 72/137 (52%), Positives = 95/137 (69%)
Query: 87 VKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDE 146
V TTGI+E F +++ F++ DVGGQRSER+KWIHCFE+VT+I+F VA+SEYDQVL E +
Sbjct: 30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89
Query: 147 TTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGER 206
NRM+ES LF +I WF ++S+ILFLNKKDL EEKI S L FPEY G + +
Sbjct: 90 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQ 149
Query: 207 NRMQESLKLFDSICNNK 223
+ LK+F + +
Sbjct: 150 AAREFILKMFVDLNPDS 166
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 68.4 bits (166), Expect = 1e-14
Identities = 98/129 (75%), Positives = 107/129 (82%)
Query: 89 TTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETT 148
TGIVE HF+FK+L+FK+FDVGGQRSERKKWIHCFE VTAIIFCVA+S+YD VL EDE
Sbjct: 29 GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88
Query: 149 NRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNR 208
NRM ES+KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC+PEYAG E
Sbjct: 89 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA 148
Query: 209 MQESLKLFD 217
+ D
Sbjct: 149 AYIQCQFED 157
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 31.3 bits (70), Expect = 0.071
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 67 LDRLGAKEYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDV 126
L R ++ P+ T I V + K + +++D GQ R +
Sbjct: 19 LVRFVEDKFNPSFIT---TIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA 75
Query: 127 TAIIFCVAMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTD 169
II +++ + + + E + +D
Sbjct: 76 MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 118
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 30.2 bits (67), Expect = 0.15
Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 18/132 (13%)
Query: 74 EYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCV 133
+Y T + + V K + +++D GQ R + II
Sbjct: 34 DYISTIGVDFKIK-------TVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY 86
Query: 134 AMSEYDQVLHEDETTNRMQESLKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 193
D T +K++ + + +L NK DL ++++ + +
Sbjct: 87 -----------DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK 135
Query: 194 CFPEYAGKRPGE 205
F + E
Sbjct: 136 EFADANKMPFLE 147
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 29.6 bits (65), Expect = 0.26
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 111 GQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNR-MQESLKLFDSICNNKWFTD 169
G+ + ++ + ++ + D L + E++K
Sbjct: 48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 170 TSIILFLNKKDLFEEKIKKSPLTICFPEYAGKRPGERNRMQESLKLFDSICNNKWFTDTS 229
T +L + DL ++ E K + + + KL + K+ + S
Sbjct: 108 TPFLLVGTQIDLRDDP--------STIEKLAKNKQKPITPETAEKLARDLKAVKYV-ECS 158
Query: 230 IILFLNKKDLFEEKIKK 246
+ K++F+E I
Sbjct: 159 ALTQKGLKNVFDEAILA 175
>d1gpja3 d.58.39.1 (A:1-143) Glutamyl tRNA-reductase catalytic,
N-terminal domain {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 143
Score = 28.4 bits (63), Expect = 0.49
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 119 WIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQESLKLF 158
W+ + +F VA ++ E E +++++
Sbjct: 74 WVKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRA 113
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.1 bits (59), Expect = 1.5
Identities = 6/68 (8%), Positives = 23/68 (33%)
Query: 95 VHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQES 154
++ + K + +++D GQ R + I ++ + + + +++
Sbjct: 47 IYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 106
Query: 155 LKLFDSIC 162
+
Sbjct: 107 SWDNAQVL 114
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 2.0
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 94 EVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYD 139
+ K + +++D GQ R + I+ ++
Sbjct: 47 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK 92
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId:
10665]}
Length = 137
Score = 26.3 bits (58), Expect = 2.6
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 44 VQECFGRSNEYQLNDSAKYFLDDLDRLGAKEYQPTEQD--ILRTRVK 88
+ EC R + + D+ + D+ + +Y P E I + R+
Sbjct: 74 IAECLKRG--FNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLD 118
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 26.0 bits (56), Expect = 4.2
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 91 GIVEVHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFC--VAMSEYDQVLHEDETT 148
G ++ K + +++D GQ R + + + E L T
Sbjct: 43 GSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD 102
Query: 149 NRMQESLKLFDSICNNKW 166
RM S + +C NK
Sbjct: 103 ARMLASQNIVIILCGNKK 120
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis
[TaxId: 1423]}
Length = 324
Score = 25.9 bits (56), Expect = 5.6
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 179 KDLFE---EKIKKSPLTICFPE 197
DLF EK+ + I FPE
Sbjct: 3 ADLFSTVQEKVAGKDVKIVFPE 24
Score = 25.9 bits (56), Expect = 5.6
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 237 KDLFE---EKIKKSPLTICFPE 255
DLF EK+ + I FPE
Sbjct: 3 ADLFSTVQEKVAGKDVKIVFPE 24
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 25.2 bits (54), Expect = 7.7
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 95 VHFSFKNLNFKLFDVGGQRSERKKWIHCFEDVTAIIFCVAMSEYDQVLHEDETTNRMQE 153
+ ++D GQ R + +I ++ D + D N ++
Sbjct: 49 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 107
>d1r5ja_ c.77.1.5 (A:) Phosphotransacetylase Pta {Streptococcus
pyogenes [TaxId: 1314]}
Length = 329
Score = 25.1 bits (54), Expect = 9.0
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 179 KDLFE---EKIKKSPLTICFPE 197
+ LF EKI + I FPE
Sbjct: 4 RSLFGGLREKILGKNMKIVFPE 25
Score = 25.1 bits (54), Expect = 9.0
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 237 KDLFE---EKIKKSPLTICFPE 255
+ LF EKI + I FPE
Sbjct: 4 RSLFGGLREKILGKNMKIVFPE 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 995,030
Number of extensions: 45424
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 29
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)