Query psy6625
Match_columns 76
No_of_seqs 103 out of 583
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:59:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0085|consensus 99.8 7.5E-19 1.6E-23 132.2 4.5 58 1-58 7-64 (359)
2 KOG0082|consensus 99.7 5.7E-17 1.2E-21 124.3 3.6 59 1-59 1-59 (354)
3 KOG0099|consensus 99.5 8.9E-15 1.9E-19 111.4 3.0 57 1-57 1-64 (379)
4 smart00275 G_alpha G protein a 99.5 2.8E-14 6E-19 107.4 3.6 47 14-60 2-48 (342)
5 PF00503 G-alpha: G-protein al 99.3 1.9E-12 4.2E-17 97.5 4.8 52 9-60 34-85 (389)
6 cd00066 G-alpha G protein alph 98.9 5.3E-10 1.1E-14 83.1 1.9 27 34-60 1-27 (317)
7 PF08477 Miro: Miro-like prote 97.6 8.1E-05 1.8E-09 46.0 3.1 25 35-59 1-25 (119)
8 cd04113 Rab4 Rab4 subfamily. 97.4 0.00019 4E-09 46.3 3.0 23 34-56 1-23 (161)
9 cd01878 HflX HflX subfamily. 97.3 0.00045 9.8E-09 46.7 4.7 24 32-55 40-63 (204)
10 TIGR00231 small_GTP small GTP- 97.3 0.00013 2.9E-09 44.8 1.7 24 33-56 1-24 (161)
11 PRK08118 topology modulation p 97.3 0.00016 3.4E-09 49.3 2.1 27 35-61 3-29 (167)
12 cd04155 Arl3 Arl3 subfamily. 97.3 0.0002 4.3E-09 46.6 2.5 26 31-56 12-37 (173)
13 cd01860 Rab5_related Rab5-rela 97.3 0.00015 3.2E-09 46.6 1.7 24 33-56 1-24 (163)
14 PRK07261 topology modulation p 97.2 0.00022 4.7E-09 48.6 2.3 26 35-60 2-27 (171)
15 cd00154 Rab Rab family. Rab G 97.2 0.00042 9.2E-09 43.1 3.3 24 34-57 1-24 (159)
16 COG0563 Adk Adenylate kinase a 97.2 0.00018 3.9E-09 50.1 1.6 22 35-56 2-23 (178)
17 PF13207 AAA_17: AAA domain; P 97.1 0.0002 4.4E-09 44.6 1.4 27 35-61 1-27 (121)
18 cd04138 H_N_K_Ras_like H-Ras/N 97.1 0.00028 6E-09 44.7 1.6 23 33-55 1-23 (162)
19 cd04123 Rab21 Rab21 subfamily. 97.1 0.00028 6.2E-09 44.7 1.6 23 34-56 1-23 (162)
20 smart00175 RAB Rab subfamily o 97.1 0.00029 6.3E-09 45.0 1.6 22 34-55 1-22 (164)
21 cd00157 Rho Rho (Ras homology) 97.0 0.00035 7.5E-09 45.0 1.7 23 34-56 1-23 (171)
22 PF01926 MMR_HSR1: 50S ribosom 97.0 0.00032 6.9E-09 43.8 1.4 21 35-55 1-21 (116)
23 cd01862 Rab7 Rab7 subfamily. 97.0 0.00034 7.5E-09 45.1 1.6 21 34-54 1-21 (172)
24 smart00173 RAS Ras subfamily o 97.0 0.00037 8E-09 44.9 1.6 22 34-55 1-22 (164)
25 cd04115 Rab33B_Rab33A Rab33B/R 97.0 0.00043 9.2E-09 45.5 1.7 25 32-56 1-25 (170)
26 cd04119 RJL RJL (RabJ-Like) su 97.0 0.00042 9.1E-09 44.1 1.6 22 34-55 1-22 (168)
27 PF13479 AAA_24: AAA domain 97.0 0.00061 1.3E-08 47.8 2.5 29 32-64 2-30 (213)
28 cd04139 RalA_RalB RalA/RalB su 96.9 0.00046 9.9E-09 43.9 1.6 22 34-55 1-22 (164)
29 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.9 0.00045 9.9E-09 44.8 1.6 23 33-55 2-24 (166)
30 PRK06217 hypothetical protein; 96.9 0.00064 1.4E-08 46.2 2.3 28 34-61 2-29 (183)
31 PF00025 Arf: ADP-ribosylation 96.9 0.00046 9.9E-09 46.6 1.6 25 31-55 12-36 (175)
32 cd04154 Arl2 Arl2 subfamily. 96.9 0.00062 1.3E-08 44.9 2.1 25 30-54 11-35 (173)
33 PF00071 Ras: Ras family; Int 96.9 0.00045 9.7E-09 44.4 1.4 22 35-56 1-22 (162)
34 KOG0074|consensus 96.9 0.00065 1.4E-08 48.4 2.2 30 25-54 9-38 (185)
35 cd04164 trmE TrmE (MnmE, ThdF, 96.9 0.00057 1.2E-08 42.9 1.6 22 34-55 2-23 (157)
36 cd04135 Tc10 TC10 subfamily. 96.9 0.00058 1.3E-08 44.5 1.7 22 34-55 1-22 (174)
37 cd00879 Sar1 Sar1 subfamily. 96.9 0.00061 1.3E-08 45.3 1.8 26 30-55 16-41 (190)
38 cd04163 Era Era subfamily. Er 96.9 0.00061 1.3E-08 42.6 1.7 22 33-54 3-24 (168)
39 cd01892 Miro2 Miro2 subfamily. 96.8 0.00059 1.3E-08 45.3 1.5 25 31-55 2-26 (169)
40 COG1100 GTPase SAR1 and relate 96.8 0.0006 1.3E-08 46.1 1.5 24 33-56 5-28 (219)
41 cd01895 EngA2 EngA2 subfamily. 96.8 0.00074 1.6E-08 42.8 1.8 23 33-55 2-24 (174)
42 cd04136 Rap_like Rap-like subf 96.8 0.00072 1.6E-08 43.2 1.7 23 33-55 1-23 (163)
43 cd04106 Rab23_lke Rab23-like s 96.8 0.0007 1.5E-08 43.4 1.6 22 34-55 1-22 (162)
44 cd04146 RERG_RasL11_like RERG/ 96.8 0.0017 3.7E-08 42.1 3.5 21 35-55 1-21 (165)
45 cd00876 Ras Ras family. The R 96.8 0.0007 1.5E-08 42.8 1.6 21 35-55 1-21 (160)
46 PF13555 AAA_29: P-loop contai 96.8 0.00076 1.6E-08 40.6 1.6 22 36-57 26-47 (62)
47 cd01864 Rab19 Rab19 subfamily. 96.7 0.00083 1.8E-08 43.6 1.7 23 33-55 3-25 (165)
48 cd01868 Rab11_like Rab11-like. 96.7 0.00083 1.8E-08 43.4 1.6 22 33-54 3-24 (165)
49 PF00005 ABC_tran: ABC transpo 96.7 0.00075 1.6E-08 42.9 1.4 24 34-57 12-35 (137)
50 cd04175 Rap1 Rap1 subgroup. T 96.7 0.00088 1.9E-08 43.3 1.7 23 33-55 1-23 (164)
51 cd04150 Arf1_5_like Arf1-Arf5- 96.7 0.00087 1.9E-08 44.0 1.6 22 34-55 1-22 (159)
52 cd01861 Rab6 Rab6 subfamily. 96.7 0.00091 2E-08 42.8 1.6 23 34-56 1-23 (161)
53 cd04132 Rho4_like Rho4-like su 96.7 0.00092 2E-08 44.3 1.7 21 34-54 1-21 (187)
54 cd01863 Rab18 Rab18 subfamily. 96.7 0.00096 2.1E-08 42.8 1.6 22 34-55 1-22 (161)
55 cd04145 M_R_Ras_like M-Ras/R-R 96.7 0.001 2.2E-08 42.5 1.7 22 33-54 2-23 (164)
56 PLN03108 Rab family protein; P 96.6 0.0028 6E-08 43.8 3.8 25 32-56 5-29 (210)
57 cd04129 Rho2 Rho2 subfamily. 96.6 0.0024 5.1E-08 43.0 3.3 21 34-54 2-22 (187)
58 cd04101 RabL4 RabL4 (Rab-like4 96.6 0.0011 2.5E-08 42.5 1.6 22 34-55 1-22 (164)
59 cd04140 ARHI_like ARHI subfami 96.6 0.0012 2.5E-08 43.1 1.7 22 34-55 2-23 (165)
60 cd01867 Rab8_Rab10_Rab13_like 96.6 0.0012 2.5E-08 43.2 1.6 24 33-56 3-26 (167)
61 cd03264 ABC_drug_resistance_li 96.6 0.0022 4.7E-08 44.0 3.0 32 35-66 27-61 (211)
62 cd01865 Rab3 Rab3 subfamily. 96.6 0.0011 2.5E-08 43.2 1.5 22 34-55 2-23 (165)
63 cd04177 RSR1 RSR1 subgroup. R 96.6 0.0012 2.7E-08 43.1 1.7 22 33-54 1-22 (168)
64 cd01428 ADK Adenylate kinase ( 96.6 0.0013 2.7E-08 44.0 1.6 26 35-60 1-26 (194)
65 PF13671 AAA_33: AAA domain; P 96.6 0.0011 2.4E-08 42.1 1.3 19 36-54 2-20 (143)
66 PTZ00133 ADP-ribosylation fact 96.6 0.0013 2.8E-08 44.5 1.7 25 31-55 15-39 (182)
67 cd00878 Arf_Arl Arf (ADP-ribos 96.5 0.0013 2.7E-08 42.2 1.6 23 35-57 1-23 (158)
68 cd04114 Rab30 Rab30 subfamily. 96.5 0.0011 2.3E-08 42.9 1.2 24 31-54 5-28 (169)
69 cd01853 Toc34_like Toc34-like 96.5 0.0033 7.3E-08 45.8 3.9 29 26-54 24-52 (249)
70 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.5 0.0014 3.1E-08 43.5 1.7 24 32-55 14-37 (174)
71 cd04124 RabL2 RabL2 subfamily. 96.5 0.0016 3.5E-08 42.5 2.0 23 34-56 1-23 (161)
72 cd04112 Rab26 Rab26 subfamily. 96.5 0.0014 3E-08 44.3 1.6 22 34-55 1-22 (191)
73 PF00735 Septin: Septin; Inte 96.5 0.0012 2.5E-08 49.0 1.4 24 33-56 4-27 (281)
74 cd04107 Rab32_Rab38 Rab38/Rab3 96.5 0.0014 3.1E-08 44.5 1.7 22 34-55 1-22 (201)
75 cd04176 Rap2 Rap2 subgroup. T 96.5 0.0015 3.2E-08 42.1 1.6 24 33-56 1-24 (163)
76 PF05729 NACHT: NACHT domain 96.5 0.0015 3.4E-08 41.7 1.7 22 36-57 3-24 (166)
77 PLN00223 ADP-ribosylation fact 96.5 0.0015 3.3E-08 44.2 1.7 25 31-55 15-39 (181)
78 cd04122 Rab14 Rab14 subfamily. 96.5 0.0014 3.1E-08 42.6 1.6 22 34-55 3-24 (166)
79 cd03226 ABC_cobalt_CbiO_domain 96.5 0.003 6.5E-08 43.2 3.1 42 34-75 27-78 (205)
80 cd04160 Arfrp1 Arfrp1 subfamil 96.5 0.0015 3.3E-08 42.1 1.5 21 35-55 1-21 (167)
81 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0015 3.3E-08 43.5 1.6 23 36-58 2-24 (183)
82 TIGR01351 adk adenylate kinase 96.5 0.0015 3.3E-08 45.2 1.6 25 35-59 1-25 (210)
83 cd03263 ABC_subfamily_A The AB 96.5 0.003 6.5E-08 43.5 3.0 32 35-66 30-64 (220)
84 PF00004 AAA: ATPase family as 96.4 0.0026 5.7E-08 39.4 2.4 27 36-62 1-27 (132)
85 cd04116 Rab9 Rab9 subfamily. 96.4 0.0017 3.8E-08 42.1 1.6 24 32-55 4-27 (170)
86 cd03265 ABC_DrrA DrrA is the A 96.4 0.0031 6.7E-08 43.6 2.8 33 35-67 28-63 (220)
87 PRK03839 putative kinase; Prov 96.4 0.0024 5.3E-08 42.9 2.2 27 35-61 2-28 (180)
88 cd04158 ARD1 ARD1 subfamily. 96.4 0.0019 4.1E-08 42.6 1.6 22 35-56 1-22 (169)
89 cd01870 RhoA_like RhoA-like su 96.4 0.0019 4.2E-08 42.0 1.6 22 34-55 2-23 (175)
90 PRK13543 cytochrome c biogenes 96.4 0.0038 8.3E-08 43.2 3.2 33 35-67 39-74 (214)
91 PF13238 AAA_18: AAA domain; P 96.4 0.0018 3.9E-08 39.9 1.3 20 36-55 1-20 (129)
92 cd04127 Rab27A Rab27a subfamil 96.3 0.002 4.3E-08 42.3 1.6 24 32-55 3-26 (180)
93 smart00178 SAR Sar1p-like memb 96.3 0.0021 4.6E-08 43.3 1.7 25 31-55 15-39 (184)
94 PRK14242 phosphate transporter 96.3 0.0042 9.2E-08 43.8 3.3 21 35-55 34-54 (253)
95 cd04151 Arl1 Arl1 subfamily. 96.3 0.002 4.4E-08 41.6 1.5 21 35-55 1-21 (158)
96 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.3 0.0022 4.9E-08 42.7 1.7 24 32-55 1-24 (172)
97 PRK14532 adenylate kinase; Pro 96.3 0.0022 4.8E-08 43.2 1.7 23 35-57 2-24 (188)
98 TIGR02322 phosphon_PhnN phosph 96.3 0.0021 4.6E-08 42.9 1.6 21 36-56 4-24 (179)
99 smart00177 ARF ARF-like small 96.3 0.0023 5.1E-08 42.7 1.8 23 32-54 12-34 (175)
100 smart00382 AAA ATPases associa 96.3 0.0027 5.8E-08 38.0 1.9 27 34-60 3-29 (148)
101 PTZ00369 Ras-like protein; Pro 96.3 0.0023 4.9E-08 43.1 1.7 24 32-55 4-27 (189)
102 cd01866 Rab2 Rab2 subfamily. 96.3 0.0045 9.7E-08 40.6 3.1 24 33-56 4-27 (168)
103 PRK14530 adenylate kinase; Pro 96.3 0.0021 4.6E-08 44.7 1.6 27 34-60 4-30 (215)
104 cd04149 Arf6 Arf6 subfamily. 96.3 0.0023 5.1E-08 42.5 1.7 25 31-55 7-31 (168)
105 PRK13949 shikimate kinase; Pro 96.3 0.0032 6.9E-08 42.9 2.3 27 35-61 3-29 (169)
106 cd04137 RheB Rheb (Ras Homolog 96.3 0.0024 5.3E-08 41.9 1.7 22 34-55 2-23 (180)
107 cd00877 Ran Ran (Ras-related n 96.3 0.0024 5.2E-08 42.2 1.6 21 34-54 1-21 (166)
108 PRK14256 phosphate ABC transpo 96.2 0.005 1.1E-07 43.5 3.3 23 35-57 32-54 (252)
109 PRK10418 nikD nickel transport 96.2 0.0059 1.3E-07 43.3 3.7 33 35-67 31-70 (254)
110 cd04125 RabA_like RabA-like su 96.2 0.0025 5.3E-08 42.6 1.6 22 34-55 1-22 (188)
111 cd04110 Rab35 Rab35 subfamily. 96.2 0.0033 7.2E-08 42.8 2.3 24 32-55 5-28 (199)
112 cd01876 YihA_EngB The YihA (En 96.2 0.0025 5.3E-08 40.0 1.5 20 35-54 1-20 (170)
113 cd04118 Rab24 Rab24 subfamily. 96.2 0.0025 5.5E-08 42.5 1.6 22 34-55 1-22 (193)
114 PRK08233 hypothetical protein; 96.2 0.0025 5.3E-08 42.1 1.6 23 34-56 4-26 (182)
115 PTZ00132 GTP-binding nuclear p 96.2 0.005 1.1E-07 42.2 3.0 24 31-54 7-30 (215)
116 cd04117 Rab15 Rab15 subfamily. 96.2 0.0047 1E-07 40.4 2.8 22 34-55 1-22 (161)
117 TIGR03598 GTPase_YsxC ribosome 96.2 0.0029 6.3E-08 42.3 1.8 26 31-56 16-41 (179)
118 PRK00454 engB GTP-binding prot 96.2 0.0031 6.7E-08 41.9 1.9 24 32-55 23-46 (196)
119 TIGR03263 guanyl_kin guanylate 96.2 0.0028 6E-08 42.2 1.6 21 35-55 3-23 (180)
120 cd04156 ARLTS1 ARLTS1 subfamil 96.2 0.0029 6.3E-08 40.5 1.6 21 35-55 1-21 (160)
121 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0029 6.3E-08 41.9 1.6 20 35-54 5-24 (188)
122 PRK10078 ribose 1,5-bisphospho 96.1 0.0041 8.8E-08 42.4 2.3 29 35-63 4-32 (186)
123 cd03292 ABC_FtsE_transporter F 96.1 0.0029 6.3E-08 43.3 1.6 23 35-57 29-51 (214)
124 cd01893 Miro1 Miro1 subfamily. 96.1 0.003 6.6E-08 41.3 1.6 22 34-55 1-22 (166)
125 cd03219 ABC_Mj1267_LivG_branch 96.1 0.0029 6.2E-08 44.0 1.5 22 35-56 28-49 (236)
126 cd01874 Cdc42 Cdc42 subfamily. 96.1 0.0032 7E-08 42.2 1.7 23 33-55 1-23 (175)
127 PRK00279 adk adenylate kinase; 96.1 0.0041 9E-08 43.2 2.3 26 35-60 2-27 (215)
128 TIGR00235 udk uridine kinase. 96.1 0.003 6.5E-08 43.7 1.6 22 35-56 8-29 (207)
129 PRK14260 phosphate ABC transpo 96.1 0.0066 1.4E-07 43.2 3.3 22 35-56 35-56 (259)
130 cd04134 Rho3 Rho3 subfamily. 96.1 0.0033 7.2E-08 42.4 1.6 21 35-55 2-22 (189)
131 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0033 7.1E-08 43.0 1.6 32 35-66 28-62 (213)
132 cd03253 ABCC_ATM1_transporter 96.1 0.0032 7E-08 43.8 1.6 24 34-57 28-51 (236)
133 cd03266 ABC_NatA_sodium_export 96.1 0.0033 7.2E-08 43.2 1.6 33 34-66 32-67 (218)
134 cd01850 CDC_Septin CDC/Septin. 96.1 0.0032 7E-08 46.2 1.6 24 33-56 4-27 (276)
135 PRK14531 adenylate kinase; Pro 96.1 0.0035 7.5E-08 42.7 1.6 27 34-60 3-29 (183)
136 cd04109 Rab28 Rab28 subfamily. 96.1 0.0034 7.3E-08 43.4 1.6 21 34-54 1-21 (215)
137 TIGR03410 urea_trans_UrtE urea 96.0 0.0033 7.2E-08 43.6 1.6 24 33-56 26-49 (230)
138 cd00881 GTP_translation_factor 96.0 0.0034 7.4E-08 40.7 1.5 23 35-57 1-23 (189)
139 PRK14255 phosphate ABC transpo 96.0 0.0082 1.8E-07 42.3 3.5 22 35-56 33-54 (252)
140 PRK11147 ABC transporter ATPas 96.0 0.0069 1.5E-07 48.7 3.5 40 35-75 347-389 (635)
141 cd03234 ABCG_White The White s 96.0 0.0035 7.5E-08 43.6 1.6 23 35-57 35-57 (226)
142 TIGR03771 anch_rpt_ABC anchore 96.0 0.0067 1.5E-07 42.4 3.0 41 35-75 8-56 (223)
143 PRK13634 cbiO cobalt transport 96.0 0.0069 1.5E-07 44.2 3.2 32 35-66 35-69 (290)
144 cd01130 VirB11-like_ATPase Typ 96.0 0.0082 1.8E-07 41.0 3.4 24 33-56 25-48 (186)
145 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0034 7.5E-08 43.1 1.6 24 34-57 31-54 (218)
146 PRK13644 cbiO cobalt transport 96.0 0.0074 1.6E-07 43.6 3.3 32 35-66 30-64 (274)
147 cd00882 Ras_like_GTPase Ras-li 96.0 0.0029 6.3E-08 37.9 1.0 19 38-56 1-19 (157)
148 cd04159 Arl10_like Arl10-like 96.0 0.0036 7.8E-08 39.0 1.5 21 36-56 2-22 (159)
149 cd04130 Wrch_1 Wrch-1 subfamil 96.0 0.0038 8.3E-08 41.1 1.7 22 34-55 1-22 (173)
150 PRK10744 pstB phosphate transp 96.0 0.0074 1.6E-07 43.0 3.2 22 35-56 41-62 (260)
151 cd01120 RecA-like_NTPases RecA 96.0 0.0038 8.3E-08 39.3 1.6 22 36-57 2-23 (165)
152 TIGR02315 ABC_phnC phosphonate 96.0 0.0036 7.8E-08 43.7 1.6 32 35-66 30-64 (243)
153 cd03301 ABC_MalK_N The N-termi 96.0 0.0037 7.9E-08 42.8 1.6 22 35-56 28-49 (213)
154 cd02021 GntK Gluconate kinase 96.0 0.005 1.1E-07 39.9 2.1 31 36-67 2-32 (150)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 96.0 0.0041 8.9E-08 41.8 1.8 23 33-55 3-25 (183)
156 PRK09270 nucleoside triphospha 96.0 0.013 2.9E-07 41.2 4.4 43 15-57 15-57 (229)
157 PRK13695 putative NTPase; Prov 96.0 0.0038 8.3E-08 41.9 1.6 20 34-53 1-20 (174)
158 PRK11629 lolD lipoprotein tran 96.0 0.0037 8E-08 43.7 1.6 23 35-57 37-59 (233)
159 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0038 8.2E-08 43.0 1.6 22 35-56 33-54 (221)
160 PRK09452 potA putrescine/sperm 96.0 0.0065 1.4E-07 46.6 2.9 34 35-68 42-78 (375)
161 TIGR01313 therm_gnt_kin carboh 96.0 0.0048 1E-07 40.6 1.9 26 36-61 1-26 (163)
162 PRK13642 cbiO cobalt transport 96.0 0.0081 1.7E-07 43.4 3.3 31 35-65 35-68 (277)
163 COG4619 ABC-type uncharacteriz 95.9 0.0041 9E-08 45.6 1.7 24 35-58 31-54 (223)
164 cd03232 ABC_PDR_domain2 The pl 95.9 0.0041 8.9E-08 42.5 1.6 21 35-55 35-55 (192)
165 PTZ00088 adenylate kinase 1; P 95.9 0.0054 1.2E-07 44.2 2.3 29 33-61 6-34 (229)
166 TIGR00972 3a0107s01c2 phosphat 95.9 0.0083 1.8E-07 42.2 3.2 23 35-57 29-51 (247)
167 cd03243 ABC_MutS_homologs The 95.9 0.0044 9.5E-08 42.7 1.7 22 34-55 30-51 (202)
168 cd00009 AAA The AAA+ (ATPases 95.9 0.011 2.5E-07 35.8 3.4 25 33-57 19-43 (151)
169 PRK14239 phosphate transporter 95.9 0.0093 2E-07 41.9 3.4 22 35-56 33-54 (252)
170 PRK14238 phosphate transporter 95.9 0.0092 2E-07 43.0 3.4 23 34-56 51-73 (271)
171 PF10662 PduV-EutP: Ethanolami 95.9 0.0041 8.9E-08 42.7 1.5 22 35-56 3-24 (143)
172 PRK14527 adenylate kinase; Pro 95.9 0.0043 9.3E-08 42.3 1.6 21 35-55 8-28 (191)
173 cd04108 Rab36_Rab34 Rab34/Rab3 95.9 0.0043 9.2E-08 41.3 1.6 22 35-56 2-23 (170)
174 cd03251 ABCC_MsbA MsbA is an e 95.9 0.0041 8.9E-08 43.2 1.6 22 35-56 30-51 (234)
175 cd04161 Arl2l1_Arl13_like Arl2 95.9 0.0043 9.4E-08 41.0 1.6 21 35-55 1-21 (167)
176 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.0098 2.1E-07 42.0 3.5 40 34-73 30-72 (213)
177 cd02023 UMPK Uridine monophosp 95.9 0.0042 9.2E-08 42.3 1.6 22 36-57 2-23 (198)
178 TIGR02673 FtsE cell division A 95.9 0.0043 9.2E-08 42.5 1.6 22 35-56 30-51 (214)
179 TIGR01277 thiQ thiamine ABC tr 95.9 0.0043 9.3E-08 42.8 1.6 34 33-66 24-60 (213)
180 PRK13540 cytochrome c biogenes 95.9 0.0044 9.4E-08 42.5 1.6 23 34-56 28-50 (200)
181 PRK14259 phosphate ABC transpo 95.9 0.0082 1.8E-07 43.2 3.0 22 35-56 41-62 (269)
182 cd03269 ABC_putative_ATPase Th 95.9 0.0044 9.5E-08 42.5 1.6 32 35-66 28-62 (210)
183 PRK13652 cbiO cobalt transport 95.9 0.0085 1.8E-07 43.3 3.1 31 35-65 32-65 (277)
184 cd03214 ABC_Iron-Siderophores_ 95.9 0.0045 9.8E-08 41.8 1.6 23 34-56 26-48 (180)
185 cd04111 Rab39 Rab39 subfamily. 95.9 0.0046 1E-07 42.9 1.7 23 33-55 2-24 (211)
186 cd03224 ABC_TM1139_LivF_branch 95.9 0.0044 9.6E-08 42.6 1.5 31 35-65 28-61 (222)
187 cd04144 Ras2 Ras2 subfamily. 95.9 0.0047 1E-07 41.6 1.6 21 35-55 1-21 (190)
188 PRK14266 phosphate ABC transpo 95.9 0.01 2.3E-07 41.7 3.4 34 35-68 31-72 (250)
189 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.0046 9.9E-08 40.9 1.5 39 35-74 28-69 (144)
190 TIGR00960 3a0501s02 Type II (G 95.9 0.0046 1E-07 42.5 1.6 23 34-56 30-52 (216)
191 TIGR02770 nickel_nikD nickel i 95.9 0.0045 9.8E-08 43.2 1.5 23 35-57 14-36 (230)
192 TIGR03608 L_ocin_972_ABC putat 95.9 0.0047 1E-07 42.0 1.6 22 35-56 26-47 (206)
193 PLN03071 GTP-binding nuclear p 95.9 0.0049 1.1E-07 43.1 1.7 25 31-55 11-35 (219)
194 cd03256 ABC_PhnC_transporter A 95.8 0.0046 9.9E-08 43.0 1.6 32 35-66 29-63 (241)
195 KOG0073|consensus 95.8 0.0068 1.5E-07 43.6 2.4 22 32-53 15-36 (185)
196 cd03230 ABC_DR_subfamily_A Thi 95.8 0.0047 1E-07 41.5 1.6 23 35-57 28-50 (173)
197 cd03283 ABC_MutS-like MutS-lik 95.8 0.0048 1E-07 43.1 1.7 22 35-56 27-48 (199)
198 cd00880 Era_like Era (E. coli 95.8 0.0039 8.5E-08 38.1 1.1 19 38-56 1-19 (163)
199 PRK14269 phosphate ABC transpo 95.8 0.01 2.2E-07 41.9 3.3 22 35-56 30-51 (246)
200 cd04104 p47_IIGP_like p47 (47- 95.8 0.0048 1E-07 42.3 1.6 22 34-55 2-23 (197)
201 COG4639 Predicted kinase [Gene 95.8 0.0045 9.8E-08 44.0 1.5 17 36-52 5-21 (168)
202 smart00174 RHO Rho (Ras homolo 95.8 0.0044 9.5E-08 40.3 1.3 20 36-55 1-20 (174)
203 cd04103 Centaurin_gamma Centau 95.8 0.0051 1.1E-07 40.8 1.6 22 34-55 1-22 (158)
204 PRK14247 phosphate ABC transpo 95.8 0.01 2.2E-07 41.8 3.3 22 35-56 31-52 (250)
205 PRK15093 antimicrobial peptide 95.8 0.0091 2E-07 44.5 3.2 23 35-57 35-57 (330)
206 PRK11701 phnK phosphonate C-P 95.8 0.0047 1E-07 43.8 1.6 23 34-56 33-55 (258)
207 PRK11300 livG leucine/isoleuci 95.8 0.0047 1E-07 43.5 1.5 22 35-56 33-54 (255)
208 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0048 1E-07 42.6 1.6 22 35-56 32-53 (220)
209 cd03218 ABC_YhbG The ABC trans 95.8 0.0049 1.1E-07 42.7 1.6 31 35-65 28-61 (232)
210 cd03290 ABCC_SUR1_N The SUR do 95.8 0.0049 1.1E-07 42.6 1.6 23 34-56 28-50 (218)
211 cd01871 Rac1_like Rac1-like su 95.8 0.0052 1.1E-07 41.1 1.6 23 33-55 1-23 (174)
212 PRK10584 putative ABC transpor 95.8 0.0049 1.1E-07 42.7 1.6 22 35-56 38-59 (228)
213 cd03261 ABC_Org_Solvent_Resist 95.8 0.005 1.1E-07 43.0 1.6 22 35-56 28-49 (235)
214 cd03254 ABCC_Glucan_exporter_l 95.8 0.005 1.1E-07 42.6 1.6 22 35-56 31-52 (229)
215 cd04157 Arl6 Arl6 subfamily. 95.8 0.0052 1.1E-07 39.2 1.5 22 35-56 1-22 (162)
216 PF07728 AAA_5: AAA domain (dy 95.8 0.0067 1.5E-07 38.8 2.1 28 36-63 2-29 (139)
217 PRK14251 phosphate ABC transpo 95.8 0.005 1.1E-07 43.4 1.6 23 35-57 32-54 (251)
218 cd03259 ABC_Carb_Solutes_like 95.8 0.0051 1.1E-07 42.2 1.6 22 35-56 28-49 (213)
219 PRK00300 gmk guanylate kinase; 95.8 0.0054 1.2E-07 41.7 1.6 22 35-56 7-28 (205)
220 PRK05800 cobU adenosylcobinami 95.8 0.0074 1.6E-07 41.6 2.3 26 35-60 3-28 (170)
221 PRK11264 putative amino-acid A 95.8 0.0053 1.2E-07 43.1 1.6 22 35-56 31-52 (250)
222 PRK09544 znuC high-affinity zi 95.8 0.0097 2.1E-07 42.7 3.0 41 34-75 31-74 (251)
223 cd00227 CPT Chloramphenicol (C 95.7 0.0063 1.4E-07 41.0 1.9 26 36-61 5-30 (175)
224 TIGR02324 CP_lyasePhnL phospho 95.7 0.0054 1.2E-07 42.4 1.6 22 35-56 36-57 (224)
225 cd03252 ABCC_Hemolysin The ABC 95.7 0.0053 1.1E-07 42.8 1.5 33 34-66 29-64 (237)
226 PRK02496 adk adenylate kinase; 95.7 0.0056 1.2E-07 41.2 1.6 23 34-56 2-24 (184)
227 TIGR03719 ABC_ABC_ChvD ATP-bin 95.7 0.012 2.5E-07 46.5 3.6 40 35-75 350-392 (552)
228 cd03247 ABCC_cytochrome_bd The 95.7 0.0056 1.2E-07 41.2 1.6 23 35-57 30-52 (178)
229 PRK10771 thiQ thiamine transpo 95.7 0.0054 1.2E-07 42.8 1.5 23 34-56 26-48 (232)
230 cd04121 Rab40 Rab40 subfamily. 95.7 0.0048 1E-07 42.6 1.3 25 31-55 4-28 (189)
231 PRK11248 tauB taurine transpor 95.7 0.0054 1.2E-07 43.9 1.6 23 34-56 28-50 (255)
232 TIGR02528 EutP ethanolamine ut 95.7 0.0058 1.2E-07 38.7 1.5 22 35-56 2-23 (142)
233 TIGR01978 sufC FeS assembly AT 95.7 0.0056 1.2E-07 42.6 1.6 22 35-56 28-49 (243)
234 PRK11614 livF leucine/isoleuci 95.7 0.0054 1.2E-07 42.8 1.5 22 35-56 33-54 (237)
235 cd03258 ABC_MetN_methionine_tr 95.7 0.0056 1.2E-07 42.6 1.6 23 35-57 33-55 (233)
236 cd03248 ABCC_TAP TAP, the Tran 95.7 0.0056 1.2E-07 42.4 1.6 33 33-65 40-75 (226)
237 cd03225 ABC_cobalt_CbiO_domain 95.7 0.0057 1.2E-07 41.8 1.6 22 35-56 29-50 (211)
238 cd03228 ABCC_MRP_Like The MRP 95.7 0.0058 1.2E-07 41.0 1.6 24 34-57 29-52 (171)
239 cd03296 ABC_CysA_sulfate_impor 95.7 0.0056 1.2E-07 42.9 1.6 23 35-57 30-52 (239)
240 cd03246 ABCC_Protease_Secretio 95.7 0.0058 1.3E-07 41.0 1.6 22 35-56 30-51 (173)
241 PRK14528 adenylate kinase; Pro 95.7 0.0078 1.7E-07 41.4 2.2 27 35-61 3-29 (186)
242 PF13521 AAA_28: AAA domain; P 95.7 0.0044 9.6E-08 41.0 0.9 22 35-56 1-22 (163)
243 cd03257 ABC_NikE_OppD_transpor 95.7 0.0058 1.3E-07 42.1 1.6 23 34-56 32-54 (228)
244 PF00350 Dynamin_N: Dynamin fa 95.7 0.0052 1.1E-07 40.0 1.2 19 36-54 1-19 (168)
245 cd03223 ABCD_peroxisomal_ALDP 95.7 0.006 1.3E-07 41.0 1.6 23 34-56 28-50 (166)
246 PRK14237 phosphate transporter 95.7 0.013 2.8E-07 42.0 3.4 23 35-57 48-70 (267)
247 PF13304 AAA_21: AAA domain; P 95.7 0.0029 6.3E-08 40.8 0.0 21 37-57 3-23 (303)
248 PRK14270 phosphate ABC transpo 95.7 0.013 2.9E-07 41.3 3.4 33 35-67 32-72 (251)
249 PRK13638 cbiO cobalt transport 95.7 0.0058 1.3E-07 43.8 1.5 33 35-67 29-64 (271)
250 TIGR02323 CP_lyasePhnK phospho 95.7 0.006 1.3E-07 43.0 1.6 23 34-56 30-52 (253)
251 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.7 0.0058 1.3E-07 42.6 1.5 23 34-56 30-52 (238)
252 PRK05480 uridine/cytidine kina 95.7 0.0068 1.5E-07 41.7 1.8 26 32-57 5-30 (209)
253 PRK10247 putative ABC transpor 95.7 0.0061 1.3E-07 42.5 1.6 22 35-56 35-56 (225)
254 cd00820 PEPCK_HprK Phosphoenol 95.6 0.0064 1.4E-07 39.9 1.5 20 35-54 17-36 (107)
255 cd03267 ABC_NatA_like Similar 95.6 0.0062 1.3E-07 42.9 1.6 24 33-56 47-70 (236)
256 PRK11124 artP arginine transpo 95.6 0.0063 1.4E-07 42.6 1.6 32 35-66 30-64 (242)
257 cd03295 ABC_OpuCA_Osmoprotecti 95.6 0.0063 1.4E-07 42.7 1.6 22 35-56 29-50 (242)
258 cd03236 ABC_RNaseL_inhibitor_d 95.6 0.0063 1.4E-07 44.0 1.6 24 33-56 26-49 (255)
259 TIGR03411 urea_trans_UrtD urea 95.6 0.0064 1.4E-07 42.5 1.6 32 35-66 30-64 (242)
260 smart00534 MUTSac ATPase domai 95.6 0.0067 1.5E-07 41.5 1.6 22 36-57 2-23 (185)
261 PF07931 CPT: Chloramphenicol 95.6 0.0076 1.7E-07 42.2 1.9 27 36-62 4-30 (174)
262 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.0067 1.4E-07 39.9 1.6 24 34-57 26-49 (157)
263 PRK14250 phosphate ABC transpo 95.6 0.0064 1.4E-07 42.8 1.6 23 35-57 31-53 (241)
264 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.0067 1.5E-07 41.6 1.6 23 34-56 35-57 (207)
265 PRK09473 oppD oligopeptide tra 95.6 0.013 2.8E-07 43.9 3.2 23 35-57 44-66 (330)
266 cd01875 RhoG RhoG subfamily. 95.6 0.0075 1.6E-07 40.9 1.8 23 33-55 3-25 (191)
267 PF04548 AIG1: AIG1 family; I 95.6 0.0068 1.5E-07 42.4 1.6 20 35-54 2-21 (212)
268 PRK14526 adenylate kinase; Pro 95.6 0.007 1.5E-07 43.1 1.6 23 35-57 2-24 (211)
269 PRK14243 phosphate transporter 95.6 0.015 3.2E-07 41.7 3.3 21 35-55 38-58 (264)
270 PRK10575 iron-hydroxamate tran 95.6 0.0066 1.4E-07 43.4 1.5 23 34-56 38-60 (265)
271 cd03272 ABC_SMC3_euk Eukaryoti 95.6 0.007 1.5E-07 42.2 1.6 22 35-56 25-46 (243)
272 cd01131 PilT Pilus retraction 95.6 0.007 1.5E-07 42.0 1.6 21 36-56 4-24 (198)
273 cd02025 PanK Pantothenate kina 95.6 0.0068 1.5E-07 43.1 1.5 23 36-58 2-24 (220)
274 PRK10908 cell division protein 95.5 0.0071 1.5E-07 41.9 1.6 24 34-57 29-52 (222)
275 PRK15056 manganese/iron transp 95.5 0.0069 1.5E-07 43.6 1.5 22 35-56 35-56 (272)
276 PRK13650 cbiO cobalt transport 95.5 0.007 1.5E-07 43.9 1.6 22 35-56 35-56 (279)
277 COG1126 GlnQ ABC-type polar am 95.5 0.007 1.5E-07 45.1 1.6 31 35-65 30-63 (240)
278 PRK13549 xylose transporter AT 95.5 0.011 2.4E-07 45.9 2.8 23 35-57 290-312 (506)
279 cd03235 ABC_Metallic_Cations A 95.5 0.0071 1.5E-07 41.5 1.5 22 35-56 27-48 (213)
280 PRK11831 putative ABC transpor 95.5 0.0072 1.6E-07 43.4 1.6 22 35-56 35-56 (269)
281 PRK14264 phosphate ABC transpo 95.5 0.014 3.1E-07 42.9 3.2 22 35-56 73-94 (305)
282 cd03216 ABC_Carb_Monos_I This 95.5 0.0076 1.6E-07 40.4 1.6 22 35-56 28-49 (163)
283 cd03229 ABC_Class3 This class 95.5 0.0077 1.7E-07 40.6 1.6 22 35-56 28-49 (178)
284 cd03268 ABC_BcrA_bacitracin_re 95.5 0.0076 1.7E-07 41.2 1.6 33 35-67 28-63 (208)
285 PRK14245 phosphate ABC transpo 95.5 0.0075 1.6E-07 42.5 1.6 21 35-55 31-51 (250)
286 PRK13651 cobalt transporter AT 95.5 0.0073 1.6E-07 44.7 1.6 22 35-56 35-56 (305)
287 cd03215 ABC_Carb_Monos_II This 95.5 0.0077 1.7E-07 40.8 1.5 23 35-57 28-50 (182)
288 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.0076 1.6E-07 42.2 1.6 22 35-56 29-50 (236)
289 PHA02530 pseT polynucleotide k 95.5 0.0074 1.6E-07 43.3 1.5 22 36-57 5-26 (300)
290 PRK06762 hypothetical protein; 95.5 0.0079 1.7E-07 39.7 1.6 22 36-57 5-26 (166)
291 cd00544 CobU Adenosylcobinamid 95.5 0.012 2.5E-07 40.7 2.5 25 36-60 2-26 (169)
292 PRK09580 sufC cysteine desulfu 95.5 0.0076 1.6E-07 42.2 1.5 24 34-57 28-51 (248)
293 cd04147 Ras_dva Ras-dva subfam 95.5 0.0079 1.7E-07 40.8 1.6 21 35-55 1-21 (198)
294 PLN03118 Rab family protein; P 95.5 0.008 1.7E-07 41.2 1.6 23 32-54 13-35 (211)
295 cd03244 ABCC_MRP_domain2 Domai 95.5 0.0079 1.7E-07 41.4 1.6 22 35-56 32-53 (221)
296 cd03260 ABC_PstB_phosphate_tra 95.5 0.0079 1.7E-07 41.7 1.6 23 35-57 28-50 (227)
297 TIGR01189 ccmA heme ABC export 95.5 0.008 1.7E-07 41.0 1.6 23 34-56 27-49 (198)
298 TIGR02868 CydC thiol reductant 95.5 0.013 2.7E-07 45.6 2.8 35 33-67 361-398 (529)
299 cd03280 ABC_MutS2 MutS2 homolo 95.5 0.0084 1.8E-07 41.3 1.7 21 35-55 30-50 (200)
300 cd02019 NK Nucleoside/nucleoti 95.5 0.0089 1.9E-07 35.2 1.6 21 36-56 2-22 (69)
301 PRK13539 cytochrome c biogenes 95.5 0.008 1.7E-07 41.5 1.6 31 35-65 30-63 (207)
302 PRK15177 Vi polysaccharide exp 95.4 0.0081 1.8E-07 41.9 1.6 22 35-56 15-36 (213)
303 PRK13541 cytochrome c biogenes 95.4 0.0081 1.8E-07 41.0 1.6 32 35-66 28-62 (195)
304 cd03245 ABCC_bacteriocin_expor 95.4 0.0081 1.7E-07 41.3 1.6 23 35-57 32-54 (220)
305 PRK14274 phosphate ABC transpo 95.4 0.008 1.7E-07 42.7 1.6 22 35-56 40-61 (259)
306 PRK00089 era GTPase Era; Revie 95.4 0.013 2.7E-07 42.3 2.6 29 33-61 5-38 (292)
307 PRK13641 cbiO cobalt transport 95.4 0.018 3.8E-07 41.9 3.4 32 35-66 35-69 (287)
308 PRK13646 cbiO cobalt transport 95.4 0.008 1.7E-07 43.7 1.6 32 34-65 34-68 (286)
309 TIGR00436 era GTP-binding prot 95.4 0.009 2E-07 43.0 1.8 20 35-54 2-21 (270)
310 PRK14236 phosphate transporter 95.4 0.018 3.8E-07 41.5 3.3 22 35-56 53-74 (272)
311 cd03297 ABC_ModC_molybdenum_tr 95.4 0.0084 1.8E-07 41.3 1.6 23 34-56 24-46 (214)
312 PRK13548 hmuV hemin importer A 95.4 0.0082 1.8E-07 42.9 1.6 32 35-66 30-64 (258)
313 TIGR01184 ntrCD nitrate transp 95.4 0.0085 1.8E-07 42.0 1.6 22 35-56 13-34 (230)
314 PRK11231 fecE iron-dicitrate t 95.4 0.0084 1.8E-07 42.5 1.6 22 35-56 30-51 (255)
315 PRK10636 putative ABC transpor 95.4 0.018 3.9E-07 46.6 3.6 40 35-75 340-382 (638)
316 cd03238 ABC_UvrA The excision 95.4 0.0086 1.9E-07 41.5 1.5 20 34-53 22-41 (176)
317 cd03213 ABCG_EPDR ABCG transpo 95.4 0.009 1.9E-07 41.0 1.6 24 34-57 36-59 (194)
318 PRK13538 cytochrome c biogenes 95.4 0.0089 1.9E-07 41.0 1.6 32 35-66 29-63 (204)
319 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.0088 1.9E-07 42.9 1.6 23 35-57 27-49 (246)
320 PRK13645 cbiO cobalt transport 95.4 0.0086 1.9E-07 43.4 1.5 22 35-56 39-60 (289)
321 PRK14248 phosphate ABC transpo 95.4 0.0089 1.9E-07 42.7 1.6 21 35-55 49-69 (268)
322 TIGR03005 ectoine_ehuA ectoine 95.3 0.009 1.9E-07 42.2 1.6 23 35-57 28-50 (252)
323 cd03279 ABC_sbcCD SbcCD and ot 95.3 0.0087 1.9E-07 41.6 1.5 21 35-55 30-50 (213)
324 PRK04213 GTP-binding protein; 95.3 0.01 2.3E-07 39.8 1.8 24 32-55 8-31 (201)
325 cd04143 Rhes_like Rhes_like su 95.3 0.009 1.9E-07 43.0 1.6 22 34-55 1-22 (247)
326 PRK14265 phosphate ABC transpo 95.3 0.009 2E-07 43.2 1.6 21 35-55 48-68 (274)
327 cd03294 ABC_Pro_Gly_Bertaine T 95.3 0.0092 2E-07 42.9 1.6 23 35-57 52-74 (269)
328 COG1116 TauB ABC-type nitrate/ 95.3 0.019 4.2E-07 42.8 3.3 42 35-76 31-80 (248)
329 PRK14241 phosphate transporter 95.3 0.0091 2E-07 42.4 1.5 23 34-56 31-53 (258)
330 PRK13649 cbiO cobalt transport 95.3 0.0094 2E-07 42.9 1.6 22 35-56 35-56 (280)
331 cd03298 ABC_ThiQ_thiamine_tran 95.3 0.0097 2.1E-07 40.8 1.6 23 35-57 26-48 (211)
332 PRK14273 phosphate ABC transpo 95.3 0.0095 2.1E-07 42.1 1.6 22 35-56 35-56 (254)
333 PRK14261 phosphate ABC transpo 95.3 0.0095 2.1E-07 42.1 1.6 21 35-55 34-54 (253)
334 cd03278 ABC_SMC_barmotin Barmo 95.3 0.0097 2.1E-07 41.4 1.6 22 35-56 24-45 (197)
335 PRK09984 phosphonate/organopho 95.3 0.0095 2.1E-07 42.4 1.6 23 35-57 32-54 (262)
336 PRK09493 glnQ glutamine ABC tr 95.3 0.0096 2.1E-07 41.6 1.6 33 35-67 29-64 (240)
337 PF03029 ATP_bind_1: Conserved 95.3 0.0067 1.5E-07 43.8 0.8 19 38-56 1-19 (238)
338 PRK14240 phosphate transporter 95.3 0.0097 2.1E-07 41.9 1.6 21 35-55 31-51 (250)
339 PRK13546 teichoic acids export 95.3 0.0098 2.1E-07 43.2 1.6 24 34-57 51-74 (264)
340 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.3 0.0099 2.1E-07 41.6 1.5 23 34-56 49-71 (224)
341 PRK14235 phosphate transporter 95.3 0.0098 2.1E-07 42.7 1.6 23 35-57 47-69 (267)
342 COG1122 CbiO ABC-type cobalt t 95.3 0.0096 2.1E-07 43.3 1.5 21 35-55 32-52 (235)
343 PRK11000 maltose/maltodextrin 95.3 0.018 4E-07 43.7 3.1 22 35-56 31-52 (369)
344 TIGR03740 galliderm_ABC gallid 95.3 0.01 2.2E-07 41.1 1.6 32 35-66 28-62 (223)
345 cd01855 YqeH YqeH. YqeH is an 95.2 0.026 5.7E-07 38.1 3.6 24 32-55 126-149 (190)
346 PRK10895 lipopolysaccharide AB 95.2 0.01 2.2E-07 41.5 1.6 23 35-57 31-53 (241)
347 TIGR01166 cbiO cobalt transpor 95.2 0.01 2.2E-07 40.1 1.6 22 35-56 20-41 (190)
348 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.01 2.2E-07 40.8 1.5 22 35-56 28-49 (200)
349 PRK13639 cbiO cobalt transport 95.2 0.0099 2.2E-07 42.9 1.5 22 35-56 30-51 (275)
350 PRK14267 phosphate ABC transpo 95.2 0.01 2.2E-07 41.8 1.6 22 35-56 32-53 (253)
351 PRK11176 lipid transporter ATP 95.2 0.0098 2.1E-07 46.6 1.6 34 33-66 369-405 (582)
352 TIGR02769 nickel_nikE nickel i 95.2 0.01 2.2E-07 42.5 1.6 23 34-56 38-60 (265)
353 PRK00131 aroK shikimate kinase 95.2 0.011 2.4E-07 38.4 1.6 28 34-61 5-32 (175)
354 PRK14253 phosphate ABC transpo 95.2 0.01 2.3E-07 41.7 1.6 22 35-56 31-52 (249)
355 PF13191 AAA_16: AAA ATPase do 95.2 0.011 2.3E-07 38.7 1.5 27 34-60 25-51 (185)
356 cd04128 Spg1 Spg1p. Spg1p (se 95.2 0.011 2.4E-07 40.1 1.6 22 34-55 1-22 (182)
357 PRK11607 potG putrescine trans 95.2 0.019 4.1E-07 44.0 3.1 41 35-75 47-98 (377)
358 PRK09825 idnK D-gluconate kina 95.2 0.011 2.3E-07 40.6 1.6 31 36-67 6-36 (176)
359 cd00071 GMPK Guanosine monopho 95.2 0.011 2.4E-07 38.9 1.6 21 36-56 2-22 (137)
360 PRK14268 phosphate ABC transpo 95.2 0.011 2.3E-07 42.1 1.6 22 35-56 40-61 (258)
361 TIGR00968 3a0106s01 sulfate AB 95.2 0.011 2.4E-07 41.6 1.6 22 35-56 28-49 (237)
362 PRK10253 iron-enterobactin tra 95.2 0.01 2.3E-07 42.4 1.5 23 35-57 35-57 (265)
363 PRK13640 cbiO cobalt transport 95.2 0.01 2.3E-07 43.0 1.5 23 35-57 35-57 (282)
364 PLN03110 Rab GTPase; Provision 95.2 0.011 2.3E-07 41.1 1.5 23 32-54 11-33 (216)
365 cd03222 ABC_RNaseL_inhibitor T 95.2 0.01 2.2E-07 41.2 1.4 40 34-75 26-68 (177)
366 PRK14262 phosphate ABC transpo 95.2 0.011 2.4E-07 41.6 1.6 21 35-55 31-51 (250)
367 PRK11247 ssuB aliphatic sulfon 95.2 0.011 2.4E-07 42.7 1.6 22 35-56 40-61 (257)
368 TIGR02524 dot_icm_DotB Dot/Icm 95.1 0.011 2.4E-07 45.3 1.6 22 34-55 135-156 (358)
369 CHL00131 ycf16 sulfate ABC tra 95.1 0.011 2.4E-07 41.5 1.5 23 34-56 34-56 (252)
370 PRK13632 cbiO cobalt transport 95.1 0.012 2.5E-07 42.4 1.6 23 35-57 37-59 (271)
371 cd01898 Obg Obg subfamily. Th 95.1 0.012 2.6E-07 37.8 1.5 20 35-54 2-21 (170)
372 PRK13648 cbiO cobalt transport 95.1 0.012 2.5E-07 42.2 1.6 32 35-66 37-71 (269)
373 cd04131 Rnd Rnd subfamily. Th 95.1 0.012 2.7E-07 39.8 1.6 22 34-55 2-23 (178)
374 PRK13635 cbiO cobalt transport 95.1 0.011 2.5E-07 42.8 1.5 32 35-66 35-69 (279)
375 PRK14244 phosphate ABC transpo 95.1 0.012 2.6E-07 41.5 1.6 22 35-56 33-54 (251)
376 cd03250 ABCC_MRP_domain1 Domai 95.1 0.012 2.7E-07 40.2 1.6 40 33-75 31-73 (204)
377 PLN02674 adenylate kinase 95.1 0.023 5E-07 41.7 3.1 29 30-58 28-56 (244)
378 PRK15064 ABC transporter ATP-b 95.1 0.024 5.2E-07 44.3 3.4 40 35-75 347-389 (530)
379 PRK13647 cbiO cobalt transport 95.1 0.011 2.5E-07 42.6 1.5 22 35-56 33-54 (274)
380 PRK13637 cbiO cobalt transport 95.1 0.012 2.6E-07 42.9 1.5 22 35-56 35-56 (287)
381 PRK10762 D-ribose transporter 95.1 0.022 4.7E-07 44.3 3.0 31 35-65 32-65 (501)
382 cd01897 NOG NOG1 is a nucleola 95.1 0.013 2.9E-07 37.7 1.6 22 35-56 2-23 (168)
383 PRK09087 hypothetical protein; 95.0 0.013 2.7E-07 41.9 1.6 20 36-55 47-66 (226)
384 cd04148 RGK RGK subfamily. Th 95.0 0.013 2.7E-07 41.1 1.6 21 34-54 1-21 (221)
385 PRK10419 nikE nickel transport 95.0 0.012 2.7E-07 42.2 1.6 23 34-56 39-61 (268)
386 COG3839 MalK ABC-type sugar tr 95.0 0.017 3.6E-07 44.5 2.3 34 35-68 31-67 (338)
387 KOG2655|consensus 95.0 0.021 4.6E-07 44.6 2.9 24 33-56 21-44 (366)
388 TIGR03574 selen_PSTK L-seryl-t 95.0 0.013 2.7E-07 41.6 1.5 22 36-57 2-23 (249)
389 PRK14275 phosphate ABC transpo 95.0 0.013 2.8E-07 42.7 1.6 22 35-56 67-88 (286)
390 TIGR00450 mnmE_trmE_thdF tRNA 95.0 0.052 1.1E-06 42.6 5.0 39 17-55 186-225 (442)
391 PLN02200 adenylate kinase fami 95.0 0.013 2.9E-07 42.1 1.6 26 33-58 43-68 (234)
392 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 95.0 0.014 3E-07 39.9 1.6 25 32-56 4-28 (182)
393 PRK15112 antimicrobial peptide 95.0 0.013 2.8E-07 42.0 1.5 24 34-57 40-63 (267)
394 TIGR03269 met_CoM_red_A2 methy 95.0 0.013 2.7E-07 45.7 1.6 24 34-57 27-50 (520)
395 PRK11819 putative ABC transpor 95.0 0.029 6.2E-07 44.4 3.6 40 35-75 352-394 (556)
396 COG1120 FepC ABC-type cobalami 95.0 0.011 2.4E-07 44.1 1.2 21 36-56 31-51 (258)
397 cd03288 ABCC_SUR2 The SUR doma 95.0 0.013 2.9E-07 41.7 1.6 33 34-66 48-83 (257)
398 TIGR02788 VirB11 P-type DNA tr 95.0 0.013 2.8E-07 43.4 1.6 26 31-56 142-167 (308)
399 TIGR03238 dnd_assoc_3 dnd syst 95.0 0.022 4.9E-07 46.2 3.0 36 16-51 11-50 (504)
400 PRK14257 phosphate ABC transpo 95.0 0.028 6.1E-07 42.2 3.3 24 34-57 109-132 (329)
401 PRK13643 cbiO cobalt transport 94.9 0.013 2.9E-07 42.7 1.5 22 35-56 34-55 (288)
402 TIGR01288 nodI ATP-binding ABC 94.9 0.014 3E-07 42.8 1.6 23 35-57 32-54 (303)
403 PRK14252 phosphate ABC transpo 94.9 0.014 3E-07 41.7 1.6 22 35-56 44-65 (265)
404 cd03231 ABC_CcmA_heme_exporter 94.9 0.014 3.1E-07 40.0 1.6 24 33-56 26-49 (201)
405 PRK13633 cobalt transporter AT 94.9 0.014 3E-07 42.2 1.6 22 35-56 38-59 (280)
406 cd03273 ABC_SMC2_euk Eukaryoti 94.9 0.015 3.1E-07 41.4 1.6 22 35-56 27-48 (251)
407 TIGR03873 F420-0_ABC_ATP propo 94.9 0.014 3.1E-07 41.3 1.5 32 35-66 29-63 (256)
408 PRK03695 vitamin B12-transport 94.9 0.014 3.1E-07 41.4 1.5 23 35-57 24-46 (248)
409 PRK13547 hmuV hemin importer A 94.9 0.014 3.1E-07 42.4 1.6 22 35-56 29-50 (272)
410 PRK13764 ATPase; Provisional 94.9 0.014 3E-07 48.0 1.6 23 34-56 258-280 (602)
411 PRK05057 aroK shikimate kinase 94.9 0.021 4.7E-07 38.8 2.3 28 34-61 5-32 (172)
412 PRK14272 phosphate ABC transpo 94.9 0.015 3.2E-07 40.9 1.6 23 35-57 32-54 (252)
413 PRK10938 putative molybdenum t 94.9 0.014 3.1E-07 45.0 1.5 22 35-56 31-52 (490)
414 cd04126 Rab20 Rab20 subfamily. 94.9 0.015 3.3E-07 41.3 1.6 22 34-55 1-22 (220)
415 cd03233 ABC_PDR_domain1 The pl 94.8 0.015 3.3E-07 40.1 1.5 24 34-57 34-57 (202)
416 cd04102 RabL3 RabL3 (Rab-like3 94.8 0.016 3.5E-07 40.7 1.6 22 34-55 1-22 (202)
417 PF01443 Viral_helicase1: Vira 94.8 0.014 3E-07 39.9 1.3 21 36-56 1-21 (234)
418 TIGR03265 PhnT2 putative 2-ami 94.8 0.028 6.1E-07 42.6 3.0 33 35-67 32-67 (353)
419 PRK14271 phosphate ABC transpo 94.8 0.016 3.4E-07 42.1 1.6 22 35-56 49-70 (276)
420 cd04162 Arl9_Arfrp2_like Arl9/ 94.8 0.017 3.6E-07 38.1 1.6 21 36-56 2-22 (164)
421 COG0488 Uup ATPase components 94.8 0.04 8.7E-07 44.5 4.0 44 32-76 347-393 (530)
422 TIGR01188 drrA daunorubicin re 94.8 0.016 3.4E-07 42.5 1.6 31 35-65 21-54 (302)
423 PRK11288 araG L-arabinose tran 94.8 0.032 6.9E-07 43.4 3.3 22 35-56 32-53 (501)
424 cd01852 AIG1 AIG1 (avrRpt2-ind 94.8 0.017 3.7E-07 39.3 1.6 20 35-54 2-21 (196)
425 COG4598 HisP ABC-type histidin 94.8 0.016 3.5E-07 43.0 1.6 18 36-55 35-52 (256)
426 cd03299 ABC_ModC_like Archeal 94.8 0.016 3.6E-07 40.6 1.6 31 35-65 27-60 (235)
427 PRK10619 histidine/lysine/argi 94.8 0.016 3.5E-07 41.1 1.6 23 35-57 33-55 (257)
428 PRK13636 cbiO cobalt transport 94.8 0.016 3.5E-07 42.1 1.5 23 35-57 34-56 (283)
429 cd02026 PRK Phosphoribulokinas 94.8 0.016 3.5E-07 42.7 1.6 22 36-57 2-23 (273)
430 PRK14254 phosphate ABC transpo 94.8 0.036 7.8E-07 40.4 3.4 23 34-56 66-88 (285)
431 PF00485 PRK: Phosphoribulokin 94.8 0.015 3.4E-07 39.7 1.4 22 37-58 3-24 (194)
432 TIGR02782 TrbB_P P-type conjug 94.8 0.036 7.8E-07 41.3 3.4 24 33-56 132-155 (299)
433 PRK13631 cbiO cobalt transport 94.8 0.016 3.5E-07 43.3 1.6 30 35-64 54-86 (320)
434 PRK15134 microcin C ABC transp 94.8 0.037 8E-07 43.3 3.6 23 35-57 314-336 (529)
435 TIGR02142 modC_ABC molybdenum 94.8 0.016 3.5E-07 43.6 1.6 23 35-57 25-47 (354)
436 PRK15064 ABC transporter ATP-b 94.7 0.016 3.5E-07 45.3 1.6 41 34-75 28-71 (530)
437 PLN03073 ABC transporter F fam 94.7 0.036 7.8E-07 45.9 3.7 40 35-75 537-579 (718)
438 cd02022 DPCK Dephospho-coenzym 94.7 0.018 3.9E-07 39.1 1.6 20 36-55 2-21 (179)
439 PTZ00301 uridine kinase; Provi 94.7 0.017 3.7E-07 41.2 1.5 18 36-53 6-23 (210)
440 PRK14529 adenylate kinase; Pro 94.7 0.018 4E-07 41.6 1.7 26 35-60 2-27 (223)
441 PRK11144 modC molybdate transp 94.7 0.017 3.8E-07 43.5 1.6 22 35-56 26-47 (352)
442 cd03240 ABC_Rad50 The catalyti 94.7 0.019 4E-07 40.1 1.6 20 35-54 24-43 (204)
443 COG1117 PstB ABC-type phosphat 94.7 0.015 3.2E-07 43.6 1.1 17 37-53 37-53 (253)
444 PRK06893 DNA replication initi 94.7 0.019 4E-07 40.7 1.6 22 35-56 41-62 (229)
445 smart00763 AAA_PrkA PrkA AAA d 94.7 0.018 3.9E-07 44.8 1.6 22 36-57 81-102 (361)
446 cd04142 RRP22 RRP22 subfamily. 94.6 0.019 4.1E-07 39.7 1.6 21 34-54 1-21 (198)
447 TIGR03719 ABC_ABC_ChvD ATP-bin 94.6 0.018 3.9E-07 45.4 1.6 41 34-75 32-75 (552)
448 PRK08727 hypothetical protein; 94.6 0.019 4.1E-07 40.8 1.6 21 36-56 44-64 (233)
449 COG1136 SalX ABC-type antimicr 94.6 0.018 4E-07 42.1 1.5 31 35-65 33-66 (226)
450 cd03300 ABC_PotA_N PotA is an 94.6 0.019 4.2E-07 40.1 1.6 24 34-57 27-50 (232)
451 cd03291 ABCC_CFTR1 The CFTR su 94.6 0.019 4.1E-07 42.3 1.6 22 35-56 65-86 (282)
452 COG5019 CDC3 Septin family pro 94.6 0.03 6.6E-07 44.0 2.8 26 31-56 21-46 (373)
453 PRK04182 cytidylate kinase; Pr 94.6 0.029 6.3E-07 36.8 2.3 26 35-60 2-27 (180)
454 cd02028 UMPK_like Uridine mono 94.6 0.02 4.3E-07 39.3 1.5 21 36-56 2-22 (179)
455 cd03114 ArgK-like The function 94.6 0.02 4.3E-07 38.4 1.5 22 36-57 2-23 (148)
456 PRK13947 shikimate kinase; Pro 94.6 0.029 6.4E-07 36.9 2.3 27 35-61 3-29 (171)
457 TIGR02982 heterocyst_DevA ABC 94.6 0.02 4.4E-07 39.6 1.6 33 34-66 32-67 (220)
458 PRK01184 hypothetical protein; 94.5 0.019 4.1E-07 38.5 1.4 17 35-51 3-19 (184)
459 cd01857 HSR1_MMR1 HSR1/MMR1. 94.5 0.022 4.7E-07 37.1 1.6 22 33-54 83-104 (141)
460 TIGR01618 phage_P_loop phage n 94.5 0.023 5.1E-07 41.1 1.9 30 33-65 12-41 (220)
461 PRK11153 metN DL-methionine tr 94.5 0.02 4.3E-07 43.0 1.5 23 35-57 33-55 (343)
462 TIGR02204 MsbA_rel ABC transpo 94.5 0.02 4.3E-07 44.7 1.6 34 32-65 365-401 (576)
463 PF00009 GTP_EFTU: Elongation 94.5 0.02 4.4E-07 38.6 1.5 26 32-57 2-27 (188)
464 PF13481 AAA_25: AAA domain; P 94.5 0.02 4.4E-07 38.2 1.4 24 35-58 34-57 (193)
465 PRK13851 type IV secretion sys 94.5 0.027 5.9E-07 43.1 2.2 25 31-55 160-184 (344)
466 cd02027 APSK Adenosine 5'-phos 94.5 0.021 4.6E-07 37.9 1.5 22 36-57 2-23 (149)
467 COG2884 FtsE Predicted ATPase 94.4 0.022 4.7E-07 42.1 1.6 31 35-65 30-63 (223)
468 PF00406 ADK: Adenylate kinase 94.4 0.018 3.8E-07 37.7 1.0 20 38-57 1-20 (151)
469 PF04665 Pox_A32: Poxvirus A32 94.4 0.028 6E-07 41.5 2.1 23 31-53 11-33 (241)
470 PRK14249 phosphate ABC transpo 94.4 0.023 4.9E-07 40.1 1.6 22 35-56 32-53 (251)
471 PRK14263 phosphate ABC transpo 94.4 0.023 4.9E-07 40.8 1.6 22 35-56 36-57 (261)
472 PRK10261 glutathione transport 94.4 0.041 8.8E-07 44.3 3.2 32 35-66 352-386 (623)
473 TIGR03015 pepcterm_ATPase puta 94.4 0.023 4.9E-07 39.8 1.6 24 34-57 44-67 (269)
474 PRK08356 hypothetical protein; 94.4 0.023 5E-07 39.0 1.5 20 35-54 7-26 (195)
475 PRK11819 putative ABC transpor 94.4 0.022 4.8E-07 45.0 1.6 40 35-75 35-77 (556)
476 cd04133 Rop_like Rop subfamily 94.4 0.024 5.2E-07 38.6 1.6 22 34-55 2-23 (176)
477 PRK05642 DNA replication initi 94.4 0.023 5E-07 40.5 1.6 22 34-55 46-67 (234)
478 PRK11174 cysteine/glutathione 94.3 0.023 4.9E-07 44.7 1.6 34 33-66 376-411 (588)
479 PF00437 T2SE: Type II/IV secr 94.3 0.043 9.3E-07 39.1 2.9 28 31-58 125-152 (270)
480 TIGR01186 proV glycine betaine 94.3 0.022 4.9E-07 43.6 1.5 31 35-65 21-54 (363)
481 PRK06620 hypothetical protein; 94.3 0.024 5.3E-07 40.1 1.6 25 35-59 46-70 (214)
482 TIGR00150 HI0065_YjeE ATPase, 94.3 0.11 2.4E-06 35.1 4.6 24 35-58 24-47 (133)
483 PRK10522 multidrug transporter 94.3 0.024 5.2E-07 44.5 1.6 34 33-66 349-385 (547)
484 PRK05541 adenylylsulfate kinas 94.3 0.026 5.7E-07 37.7 1.5 24 33-56 7-30 (176)
485 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.3 0.023 5E-07 38.8 1.3 20 34-53 39-58 (205)
486 cd03284 ABC_MutS1 MutS1 homolo 94.3 0.028 6.1E-07 39.7 1.8 21 35-55 32-52 (216)
487 PRK10790 putative multidrug tr 94.2 0.024 5.2E-07 44.7 1.6 35 32-66 366-403 (592)
488 TIGR01613 primase_Cterm phage/ 94.2 0.026 5.6E-07 41.4 1.6 26 32-57 75-100 (304)
489 COG1855 ATPase (PilT family) [ 94.2 0.024 5.3E-07 46.5 1.6 22 35-56 265-286 (604)
490 cd03282 ABC_MSH4_euk MutS4 hom 94.2 0.027 6E-07 39.7 1.7 21 36-56 32-52 (204)
491 cd01887 IF2_eIF5B IF2/eIF5B (i 94.2 0.039 8.4E-07 35.3 2.3 23 35-57 2-24 (168)
492 PRK00889 adenylylsulfate kinas 94.2 0.027 5.9E-07 37.6 1.6 22 36-57 7-28 (175)
493 cd01123 Rad51_DMC1_radA Rad51_ 94.2 0.03 6.5E-07 38.7 1.8 24 35-58 21-44 (235)
494 COG0572 Udk Uridine kinase [Nu 94.2 0.036 7.8E-07 40.6 2.3 29 36-64 11-41 (218)
495 PF13476 AAA_23: AAA domain; P 94.2 0.024 5.2E-07 37.2 1.3 24 36-59 22-45 (202)
496 TIGR02633 xylG D-xylose ABC tr 94.2 0.025 5.5E-07 43.8 1.5 22 35-56 288-309 (500)
497 PRK10938 putative molybdenum t 94.2 0.025 5.5E-07 43.6 1.5 22 35-56 288-309 (490)
498 PRK10261 glutathione transport 94.2 0.025 5.3E-07 45.6 1.5 23 35-57 44-66 (623)
499 PRK12339 2-phosphoglycerate ki 94.1 0.028 6E-07 39.6 1.6 23 35-57 5-27 (197)
500 PRK15079 oligopeptide ABC tran 94.1 0.027 5.8E-07 42.3 1.5 22 35-56 49-70 (331)
No 1
>KOG0085|consensus
Probab=99.75 E-value=7.5e-19 Score=132.23 Aligned_cols=58 Identities=31% Similarity=0.427 Sum_probs=55.8
Q ss_pred CCccCCHHHHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhcc
Q psy6625 1 MGCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 1 MGcc~S~ee~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
|.||+|++++++.+.+.+|+++|+++++..+++.||||||+||||||||.+||+|+-.
T Consensus 7 ~~cclsee~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg 64 (359)
T KOG0085|consen 7 MCCCLSEEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHG 64 (359)
T ss_pred hHhhCcHhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhc
Confidence 6799999999999999999999999999999999999999999999999999999864
No 2
>KOG0082|consensus
Probab=99.65 E-value=5.7e-17 Score=124.26 Aligned_cols=59 Identities=39% Similarity=0.479 Sum_probs=55.5
Q ss_pred CCccCCHHHHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhccc
Q psy6625 1 MGCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 1 MGcc~S~ee~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
|||+.|.++.++..++++||++++++++...+.+||||||+|||||||+++||.|+...
T Consensus 1 MG~~~s~e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~ 59 (354)
T KOG0082|consen 1 MGCICSAEEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGD 59 (354)
T ss_pred CCcccCchhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcC
Confidence 89999988888888999999999999999999999999999999999999999998765
No 3
>KOG0099|consensus
Probab=99.50 E-value=8.9e-15 Score=111.41 Aligned_cols=57 Identities=33% Similarity=0.352 Sum_probs=51.5
Q ss_pred CCccCCH-------HHHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 1 MGCAMSA-------EERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 1 MGcc~S~-------ee~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
||||++. +.+++.+.|+.|++++.+++..+..++||||||||||||||+++||+|.-
T Consensus 1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILH 64 (379)
T KOG0099|consen 1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILH 64 (379)
T ss_pred CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheee
Confidence 7899864 25578889999999999999999999999999999999999999999853
No 4
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.47 E-value=2.8e-14 Score=107.42 Aligned_cols=47 Identities=30% Similarity=0.358 Sum_probs=43.4
Q ss_pred HhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 14 ARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 14 ~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+.|++||++|++++++..+++||||||+||||||||++||+++-...
T Consensus 2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~g 48 (342)
T smart00275 2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDG 48 (342)
T ss_pred cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCC
Confidence 46889999999999999999999999999999999999999987654
No 5
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.31 E-value=1.9e-12 Score=97.53 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=46.2
Q ss_pred HHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 9 ERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 9 e~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
++++...+..|++++..+++...+.+||||||+||||||||++|+.++....
T Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~ 85 (389)
T PF00503_consen 34 EKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPG 85 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST-
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCC
Confidence 4456778999999999999999999999999999999999999999987654
No 6
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.90 E-value=5.3e-10 Score=83.13 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=24.5
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+||||||+||||||||++||+++-..+
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~g 27 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDG 27 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCC
Confidence 589999999999999999999987654
No 7
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.56 E-value=8.1e-05 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.1
Q ss_pred ceeeccCCCccchhhhhhhhhhccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
|++++|...||||||++++|--...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 7899999999999999999965543
No 8
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.36 E-value=0.00019 Score=46.27 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
+|++++|.+++|||||++++...
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998643
No 9
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.33 E-value=0.00045 Score=46.75 Aligned_cols=24 Identities=17% Similarity=-0.050 Sum_probs=21.1
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+++++|.+.||||||++.++-
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999988763
No 10
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.30 E-value=0.00013 Score=44.78 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.0
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
++|++++|..+||||||+.++..-
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999988643
No 11
>PRK08118 topology modulation protein; Reviewed
Probab=97.29 E-value=0.00016 Score=49.35 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=24.3
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
||++.|.++|||||+++.++-...-|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 789999999999999999998877663
No 12
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.28 E-value=0.0002 Score=46.64 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.2
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+|++++|..+||||||+.+++--
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 44789999999999999999999864
No 13
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.26 E-value=0.00015 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
++|++++|.++||||||+++++--
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999988754
No 14
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00022 Score=48.61 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.6
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
|+++.|.++||||||++.++-...-|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 78999999999999999998766544
No 15
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.21 E-value=0.00042 Score=43.10 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+|++++|..+||||||+.+++--.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc
Confidence 589999999999999999886443
No 16
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00018 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
||++||+++|||||+++.+.-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999987654
No 17
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.15 E-value=0.0002 Score=44.64 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=22.5
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
.+++-|.++|||||+++.++--..-|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 378999999999999999987665543
No 18
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.09 E-value=0.00028 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
++|++++|...+|||||+++++.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999874
No 19
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.08 E-value=0.00028 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
+|++++|.+++|||||+.+++-.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999988753
No 20
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.08 E-value=0.00029 Score=44.99 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|..+||||||++++.-
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 21
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.02 E-value=0.00035 Score=45.02 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
+|++++|...||||||+++++.-
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998743
No 22
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.02 E-value=0.00032 Score=43.79 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
+++++|...+|||||+.+++-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999984
No 23
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.01 E-value=0.00034 Score=45.08 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=19.1
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
+|++++|.++||||||+.++-
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~ 21 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYV 21 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 489999999999999998874
No 24
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.00 E-value=0.00037 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.++||||||+++++-
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999998873
No 25
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.97 E-value=0.00043 Score=45.52 Aligned_cols=25 Identities=12% Similarity=0.394 Sum_probs=22.1
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+.+|++++|.+++|||||+.+++.-
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999998653
No 26
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.96 E-value=0.00042 Score=44.14 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.4
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+++|||||+.++|.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999885
No 27
>PF13479 AAA_24: AAA domain
Probab=96.95 E-value=0.00061 Score=47.78 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=26.6
Q ss_pred CccceeeccCCCccchhhhhhhhhhcccceeee
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTTSKPMMIN 64 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~~~~~~~~ 64 (76)
+.+|+|+.|.++||||||+..+ .+|++|+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id 30 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFID 30 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEE
Confidence 4589999999999999999998 8999986
No 28
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.94 E-value=0.00046 Score=43.93 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.|+.++|.++||||||+.+++.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999875
No 29
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.93 E-value=0.00045 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|.+++|||||+.+++.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 37999999999999999998864
No 30
>PRK06217 hypothetical protein; Validated
Probab=96.92 E-value=0.00064 Score=46.21 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=24.2
Q ss_pred cceeeccCCCccchhhhhhhhhhcccce
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
.||++.|.++|||||+.+++.-...-|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 3699999999999999999988776663
No 31
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.91 E-value=0.00046 Score=46.62 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=23.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+++|+|+||-..|||||++..+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 6789999999999999999999874
No 32
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.91 E-value=0.00062 Score=44.87 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.8
Q ss_pred hhCccceeeccCCCccchhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....+|++++|.++|||||++.++.
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLL 35 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHc
Confidence 3457899999999999999998875
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.91 E-value=0.00045 Score=44.38 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
|++++|.++||||||+..++--
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999988754
No 34
>KOG0074|consensus
Probab=96.89 E-value=0.00065 Score=48.40 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=25.3
Q ss_pred HhHHhhhCccceeeccCCCccchhhhhhhh
Q psy6625 25 EDGIQAAKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 25 kekk~~~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.-+....+++||||||-+..||+|||+++-
T Consensus 9 ~~ks~t~rEirilllGldnAGKTT~LKqL~ 38 (185)
T KOG0074|consen 9 CCKSRTRREIRILLLGLDNAGKTTFLKQLK 38 (185)
T ss_pred HhcCCCcceEEEEEEecCCCcchhHHHHHc
Confidence 334445789999999999999999999984
No 35
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.87 E-value=0.00057 Score=42.93 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++|+|..++|||||+.+++-
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~ 23 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAG 23 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 4899999999999999999874
No 36
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.86 E-value=0.00058 Score=44.46 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||||+++.+.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~ 22 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999988874
No 37
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.86 E-value=0.00061 Score=45.28 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.9
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+..|++++|.+.|||||++.+++.
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34679999999999999999998875
No 38
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.85 E-value=0.00061 Score=42.58 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=19.9
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
..++.++|..+||||||+++++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999875
No 39
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.82 E-value=0.00059 Score=45.35 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=22.7
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
++.+|++++|.+.+|||+|+.+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~ 26 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC
Confidence 4678999999999999999999875
No 40
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.81 E-value=0.0006 Score=46.14 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.5
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+|++++|.+.+|||||+.++.--
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcC
Confidence 389999999999999999998743
No 41
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.81 E-value=0.00074 Score=42.84 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.++++++|..+||||||+.+++-
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~ 24 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLG 24 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Confidence 46899999999999999999854
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.80 E-value=0.00072 Score=43.23 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
++|++++|..++||||++.+++.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 36999999999999999998874
No 43
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.79 E-value=0.0007 Score=43.35 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|...+|||||+.+++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999885
No 44
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.79 E-value=0.0017 Score=42.11 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|.+.+|||||+.+++.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988764
No 45
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.79 E-value=0.0007 Score=42.78 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|...||||||+.++.-
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998863
No 46
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.79 E-value=0.00076 Score=40.57 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=19.9
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
.|+.|..+|||||++-|++++-
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998764
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.74 E-value=0.00083 Score=43.59 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.7
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
..|++++|.++||||||+.++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhh
Confidence 57999999999999999998853
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.73 E-value=0.00083 Score=43.36 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=20.4
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
.+|++++|.+.||||||+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~ 24 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFT 24 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 4799999999999999999986
No 49
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.73 E-value=0.00075 Score=42.88 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=20.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.++|..+||||||+++++-..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 367899999999999999988664
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.72 E-value=0.00088 Score=43.33 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.8
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
++|++++|..++||||++..++.
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~ 23 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQ 23 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999873
No 51
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.71 E-value=0.00087 Score=44.01 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.++|||||++..+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998853
No 52
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.70 E-value=0.00091 Score=42.77 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
.|++++|.++|||||++.++...
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999987643
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.69 E-value=0.00092 Score=44.31 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
+|++++|..++|||||+++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~ 21 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYS 21 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999987
No 54
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.67 E-value=0.00096 Score=42.78 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|...||||||+.++..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~ 22 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTD 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999988864
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.67 E-value=0.001 Score=42.53 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=19.9
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
.+|++++|.+.+||||++.+.+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~ 23 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFI 23 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4799999999999999998865
No 56
>PLN03108 Rab family protein; Provisional
Probab=96.63 E-value=0.0028 Score=43.85 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=22.0
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+|++++|...+|||||+..++.-
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~ 29 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4589999999999999999998743
No 57
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=96.61 E-value=0.0024 Score=42.98 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
.|+.++|..++|||||++++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999987
No 58
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.60 E-value=0.0011 Score=42.55 Aligned_cols=22 Identities=5% Similarity=0.090 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|+.++|.++||||||++++.-
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998763
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.60 E-value=0.0012 Score=43.13 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||||+++++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999874
No 60
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.59 E-value=0.0012 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.7
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+|++++|.+++|||||+.+++.-
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 589999999999999999998754
No 61
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0022 Score=44.01 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=24.7
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-. ++--+.+|+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 61 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ 61 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC
Confidence 7899999999999999999843 3334555553
No 62
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.58 E-value=0.0011 Score=43.16 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|..++|||||+..+..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~ 23 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD 23 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999998753
No 63
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.57 E-value=0.0012 Score=43.11 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.1
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
++|++++|.+.|||||++++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~ 22 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFV 22 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999976
No 64
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.56 E-value=0.0013 Score=44.02 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=21.6
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+|+++|..+|||||+.+.++-...-+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~ 26 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLP 26 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 58999999999999999987654443
No 65
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.56 E-value=0.0011 Score=42.14 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=17.0
Q ss_pred eeeccCCCccchhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~ 54 (76)
+++.|..+||||||++++-
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999864
No 66
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.56 E-value=0.0013 Score=44.47 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.9
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+.|||||++.++..
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Confidence 3568999999999999999998853
No 67
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.55 E-value=0.0013 Score=42.21 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=20.7
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
|+.++|..+||||||+.+++...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998664
No 68
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.54 E-value=0.0011 Score=42.87 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=21.4
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....|++++|.+.+|||||+.++.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~ 28 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFT 28 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999985
No 69
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.53 E-value=0.0033 Score=45.76 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=24.7
Q ss_pred hHHhhhCccceeeccCCCccchhhhhhhh
Q psy6625 26 DGIQAAKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 26 ekk~~~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.++......+|+|+|-.++|||||+.++-
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLl 52 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIF 52 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHh
Confidence 34556678999999999999999999865
No 70
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.53 E-value=0.0014 Score=43.50 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...|++++|.+.+|||||+.+++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc
Confidence 468999999999999999999875
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.53 E-value=0.0016 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
+|++++|.+++|||||+..++.-
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999987643
No 72
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.51 E-value=0.0014 Score=44.27 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=19.5
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|...||||||+.+++.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~ 22 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD 22 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999987754
No 73
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.51 E-value=0.0012 Score=48.97 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.8
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+||+.|..++|||||+.++|-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999964
No 74
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.51 E-value=0.0014 Score=44.51 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||||+++++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~ 22 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH 22 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 75
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.50 E-value=0.0015 Score=42.11 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.7
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
++|++++|.+++|||||+...+.-
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSG 24 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999777653
No 76
>PF05729 NACHT: NACHT domain
Probab=96.50 E-value=0.0015 Score=41.66 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.8
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++.|.++|||||+++.++---
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 5889999999999999887543
No 77
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.50 E-value=0.0015 Score=44.20 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+++|++++|.+.|||||++..++.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~ 39 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL 39 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc
Confidence 4578999999999999999998874
No 78
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.50 E-value=0.0014 Score=42.61 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=20.4
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||+|+.+++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~ 24 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6999999999999999999873
No 79
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.47 E-value=0.003 Score=43.22 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=29.0
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCcee-------EEeeeee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTV-------EIGVLVQ 75 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~ 75 (76)
-.+.|+|..+|||||+++.++-.. +--+.+++..+ .||++.|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367899999999999999998653 22245555443 3566554
No 80
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.46 E-value=0.0015 Score=42.11 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
+++++|...+||||++.+++.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhh
Confidence 579999999999999999864
No 81
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.46 E-value=0.0015 Score=43.54 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=19.6
Q ss_pred eeeccCCCccchhhhhhhhhhcc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~ 58 (76)
++++|.++|||||+.+.++--..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999998876544
No 82
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.46 E-value=0.0015 Score=45.21 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.9
Q ss_pred ceeeccCCCccchhhhhhhhhhccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
||+++|.++|||||+.+.++--..-
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999998754443
No 83
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.45 E-value=0.003 Score=43.49 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=24.0
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++=. ++--+.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY 64 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 5789999999999999999854 3333455543
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.44 E-value=0.0026 Score=39.37 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.8
Q ss_pred eeeccCCCccchhhhhhhhhhccccee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
|||.|..++||||+++.++-....|.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 689999999999999999988876653
No 85
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.41 E-value=0.0017 Score=42.14 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.2
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|.+.||||||+.+++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc
Confidence 358999999999999999998863
No 86
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0031 Score=43.59 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=24.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~ 67 (76)
.+.|+|..+|||||+++.++-.. +--+.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 63 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence 57899999999999999998542 3335565543
No 87
>PRK03839 putative kinase; Provisional
Probab=96.37 E-value=0.0024 Score=42.86 Aligned_cols=27 Identities=11% Similarity=-0.030 Sum_probs=23.3
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
+|+|.|..+|||||+.+.++-...-|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999987766554
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=96.37 E-value=0.0019 Score=42.58 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
|++++|..+|||||++.+++.-
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.37 E-value=0.0019 Score=42.00 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.|++++|...||||||+.+++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998885
No 90
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.0038 Score=43.24 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~~ 67 (76)
.+.|+|..+||||||++.++=. ++--+.+++..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 74 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKT 74 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEE
Confidence 5789999999999999999854 33345555533
No 91
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.35 E-value=0.0018 Score=39.94 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=17.2
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
|+|-|+.+|||||+++.+.-
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57889999999999988753
No 92
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.35 E-value=0.002 Score=42.26 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=21.4
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|.+.+||||++.+++.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999999864
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.0021 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|..++||||++.++.-
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhc
Confidence 5679999999999999999998753
No 94
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.34 E-value=0.0042 Score=43.77 Aligned_cols=21 Identities=14% Similarity=-0.051 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++=
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999984
No 95
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=96.34 E-value=0.002 Score=41.60 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|.+.+||||++.+++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~ 21 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL 21 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc
Confidence 689999999999999999864
No 96
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.31 E-value=0.0022 Score=42.75 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.9
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+||||++.++..
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~ 24 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFIS 24 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHh
Confidence 357999999999999999988763
No 97
>PRK14532 adenylate kinase; Provisional
Probab=96.31 E-value=0.0022 Score=43.24 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
+|+++|..+|||||+.+.++-..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999886443
No 98
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.31 E-value=0.0021 Score=42.93 Aligned_cols=21 Identities=5% Similarity=-0.127 Sum_probs=18.7
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++.|..+|||||++++++-.
T Consensus 4 ~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 99
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.31 E-value=0.0023 Score=42.67 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.0
Q ss_pred CccceeeccCCCccchhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~ 54 (76)
..+|++++|.+.||||+++..+.
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~ 34 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLK 34 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHh
Confidence 46999999999999999998885
No 100
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.30 E-value=0.0027 Score=37.95 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.8
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
..++|.|..+|||||+++.++-...++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 357999999999999999998887776
No 101
>PTZ00369 Ras-like protein; Provisional
Probab=96.30 E-value=0.0023 Score=43.13 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.++|++++|.+.+||||++..++.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999988774
No 102
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.30 E-value=0.0045 Score=40.55 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.5
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+|++++|.+.+|||||+.+++.-
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 579999999999999999998743
No 103
>PRK14530 adenylate kinase; Provisional
Probab=96.29 E-value=0.0021 Score=44.66 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=22.5
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-+|+++|+.+|||||+.+.++-...-|
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 378999999999999999987655443
No 104
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=96.29 E-value=0.0023 Score=42.51 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+.+||||++.+++.
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHcc
Confidence 3578999999999999999998864
No 105
>PRK13949 shikimate kinase; Provisional
Probab=96.26 E-value=0.0032 Score=42.95 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
+|+|+|..+|||||+.+.++-...-|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~ 29 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSF 29 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 689999999999999999987766554
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.26 E-value=0.0024 Score=41.93 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.|++|+|.+++|||||+.++..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998874
No 107
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.26 E-value=0.0024 Score=42.17 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=19.3
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
+|++++|..++|||||++++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~ 21 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHL 21 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999876
No 108
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.005 Score=43.48 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=20.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.++|..+||||||++.++=..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998764
No 109
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.25 E-value=0.0059 Score=43.34 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=24.9
Q ss_pred ceeeccCCCccchhhhhhhhhh-------cccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT-------TSKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~-------~~~~~~~~~~~ 67 (76)
.+.|+|..+||||||++.++-. ++--+.+++..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 5789999999999999998865 33335565543
No 110
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.24 E-value=0.0025 Score=42.61 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+++|||||+.++..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~ 22 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998763
No 111
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.24 E-value=0.0033 Score=42.84 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|.+++|||||+.++..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999998864
No 112
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.24 E-value=0.0025 Score=40.02 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=18.5
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
++.|+|..++||||++.+++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALT 20 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHh
Confidence 47899999999999999998
No 113
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.23 E-value=0.0025 Score=42.51 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||||+.+++.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~ 22 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH 22 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999874
No 114
>PRK08233 hypothetical protein; Provisional
Probab=96.23 E-value=0.0025 Score=42.08 Aligned_cols=23 Identities=4% Similarity=-0.125 Sum_probs=18.5
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
.-+.+.|.++|||||++.++.--
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 34567899999999999988643
No 115
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.21 E-value=0.005 Score=42.24 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.4
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+|+.++|..+||||||+...+
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~ 30 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHL 30 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999996544
No 116
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.21 E-value=0.0047 Score=40.39 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+++||||++.....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhc
Confidence 4899999999999999977653
No 117
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.20 E-value=0.0029 Score=42.25 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=23.2
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+..+++++|...+|||||+.+++-.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999864
No 118
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.19 E-value=0.0031 Score=41.86 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=22.3
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..++.++|...+||||++++++-
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 568999999999999999999986
No 119
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.17 E-value=0.0028 Score=42.19 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.++|+|..+|||||+++.++-
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999875
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=96.16 E-value=0.0029 Score=40.49 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|..++||||++.++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc
Confidence 689999999999999998864
No 121
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.15 E-value=0.0029 Score=41.92 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=18.0
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
.+++.|..+|||||+++.++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999998876
No 122
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.14 E-value=0.0041 Score=42.36 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=22.5
Q ss_pred ceeeccCCCccchhhhhhhhhhcccceee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMMI 63 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~~ 63 (76)
.+.|.|..+|||||+++.+.-....+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 47899999999999999996655434333
No 123
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.13 E-value=0.0029 Score=43.27 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 124
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.12 E-value=0.003 Score=41.28 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||||+.++..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~ 22 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS 22 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999998753
No 125
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.12 E-value=0.0029 Score=44.00 Aligned_cols=22 Identities=9% Similarity=-0.140 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999854
No 126
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.11 E-value=0.0032 Score=42.19 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.8
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|.+++|||+++.+.+.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~ 23 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTT 23 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc
Confidence 37999999999999999998874
No 127
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.11 E-value=0.0041 Score=43.20 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.1
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+|+++|.++|||||+.+.++-...-|
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~ 27 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIP 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999888665544
No 128
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.11 E-value=0.003 Score=43.66 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.+.|.++||||||+++++-.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999854
No 129
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0066 Score=43.19 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999864
No 130
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.07 E-value=0.0033 Score=42.41 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|.+++|||||+.++..
T Consensus 2 kivivG~~~vGKTsli~~~~~ 22 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTR 22 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 899999999999999998764
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.06 E-value=0.0033 Score=42.99 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=24.4
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.|+|..+||||||++.++-. ++--+.+++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGL 62 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE
Confidence 5789999999999999999854 2333555554
No 132
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0032 Score=43.76 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=20.6
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+||||||++.++=..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 367899999999999999998553
No 133
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.05 E-value=0.0033 Score=43.20 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=24.3
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-.+.|+|..+||||||++.++=.. +--+.+++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 67 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF 67 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE
Confidence 357899999999999999998553 223455543
No 134
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.05 E-value=0.0032 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.8
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.++|+++|..++|||||+.++|-.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~ 27 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNT 27 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcC
Confidence 579999999999999999999754
No 135
>PRK14531 adenylate kinase; Provisional
Probab=96.05 E-value=0.0035 Score=42.69 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=21.9
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.+|+++|..+|||||+.+.++-...-|
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 378999999999999999886654433
No 136
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.05 E-value=0.0034 Score=43.38 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=19.7
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
+|++++|.+.+||||+++.++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~ 21 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFA 21 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHh
Confidence 489999999999999999987
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.05 E-value=0.0033 Score=43.62 Aligned_cols=24 Identities=13% Similarity=-0.078 Sum_probs=20.7
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
--.+.|+|..+||||||++.++-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999998854
No 138
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.04 E-value=0.0034 Score=40.74 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
++.++|...||||||+.+++-..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~ 23 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVT 23 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhc
Confidence 47899999999999999987553
No 139
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0082 Score=42.28 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 140
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.04 E-value=0.0069 Score=48.74 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
++.|+|..+||||||++.++-.. +--+.+ +..+.||++.|
T Consensus 347 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q 389 (635)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQ 389 (635)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeC
Confidence 56899999999999999998653 222344 44567888766
No 141
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.03 E-value=0.0035 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.++=..
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57899999999999999998543
No 142
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.03 E-value=0.0067 Score=42.36 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=28.9
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCcee-----EEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNNTV-----EIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~ 75 (76)
.+.|+|..+|||||+++.++-. ++--+.+|+..+ .||++.|
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q 56 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQ 56 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecc
Confidence 6789999999999999998854 334456665432 3555544
No 143
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0069 Score=44.18 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=24.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.+|-.. +-...+++.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGER 69 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 57899999999999999999653 333555543
No 144
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.03 E-value=0.0082 Score=41.01 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.-.+++.|..+|||||++++++-.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999998754
No 145
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.03 E-value=0.0034 Score=43.12 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=20.7
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+|||||+++.++-..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 367899999999999999988653
No 146
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.02 E-value=0.0074 Score=43.62 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=24.5
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.++|..+|||||+++.+|-. ++--..+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGI 64 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 5789999999999999999965 3333455543
No 147
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.02 E-value=0.0029 Score=37.90 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=16.9
Q ss_pred eccCCCccchhhhhhhhhh
Q psy6625 38 LLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 38 LLGaGESGKST~~~~~~~~ 56 (76)
++|...||||||+++++-.
T Consensus 1 iiG~~~~GKStl~~~l~~~ 19 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGG 19 (157)
T ss_pred CCCcCCCcHHHHHHHHHhC
Confidence 5899999999999999863
No 148
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.02 E-value=0.0036 Score=38.96 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.1
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+.++|...+||||++++++-.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999998765
No 149
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.01 E-value=0.0038 Score=41.06 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.4
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+++|||||+++...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~ 22 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999987753
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0074 Score=42.96 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 151
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.01 E-value=0.0038 Score=39.32 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.2
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++.|..++|||||+++++---
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6889999999999999887654
No 152
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.00 E-value=0.0036 Score=43.68 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=24.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +--+.+|+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGT 64 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCE
Confidence 67899999999999999988542 334556553
No 153
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.00 E-value=0.0037 Score=42.85 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998865
No 154
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.99 E-value=0.005 Score=39.91 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=23.1
Q ss_pred eeeccCCCccchhhhhhhhhhcccceeeeCce
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMMINNNT 67 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~~~~~~ 67 (76)
+++.|..+|||||+++.+.-..+-+ .++..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~-~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP-FIDGDD 32 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCE-EEeCcc
Confidence 5788999999999999887765543 344443
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=95.99 E-value=0.0041 Score=41.75 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=21.1
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|.+.||||+|+.+++.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~ 25 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKF 25 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999999864
No 156
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.98 E-value=0.013 Score=41.16 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 15 RSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 15 ~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.-..+-..|........+..-+-+.|..+||||||++.++-.-
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444545554444444456677889999999999999887543
No 157
>PRK13695 putative NTPase; Provisional
Probab=95.98 E-value=0.0038 Score=41.88 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=17.9
Q ss_pred cceeeccCCCccchhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~ 53 (76)
.|++|.|.++||||||++..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999973
No 158
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.98 E-value=0.0037 Score=43.65 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 159
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.97 E-value=0.0038 Score=42.99 Aligned_cols=22 Identities=14% Similarity=-0.034 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 160
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.96 E-value=0.0065 Score=46.62 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=25.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCcee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTV 68 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~ 68 (76)
-+.|+|..+|||||+++.++=.. +--+.+++..+
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i 78 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI 78 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 47899999999999999988543 33356666544
No 161
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.96 E-value=0.0048 Score=40.64 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.0
Q ss_pred eeeccCCCccchhhhhhhhhhcccce
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
+++.|..+|||||+++.+.--...|.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~ 26 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF 26 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 47889999999999998876655444
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.0081 Score=43.40 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=23.4
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.++|..+|||||+++.++=. ++--+.+++
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 68 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 5789999999999999999843 333345544
No 163
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.94 E-value=0.0041 Score=45.56 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=21.1
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.+++.|.++||||||+++.|-.-|
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 568999999999999999997654
No 164
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0041 Score=42.52 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+||||||++.++=
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999984
No 165
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.93 E-value=0.0054 Score=44.23 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=23.9
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccce
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
-.||+|+|+++|||||+.+.++-...-|.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~ 34 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKH 34 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 46799999999999999999876655443
No 166
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.93 E-value=0.0083 Score=42.23 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.+.-..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46899999999999999987543
No 167
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.93 E-value=0.0044 Score=42.69 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
-+++|.|...||||||+++.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3689999999999999999883
No 168
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.93 E-value=0.011 Score=35.78 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.7
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
..-+++.|..++||||+++..+-..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999998765
No 169
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.0093 Score=41.91 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999743
No 170
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.0092 Score=42.97 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+|||||+++.++=.
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999854
No 171
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.92 E-value=0.0041 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
|++|.|..+|||||+++++.--
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999998643
No 172
>PRK14527 adenylate kinase; Provisional
Probab=95.92 E-value=0.0043 Score=42.32 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=18.8
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-++++|.++|||||+++.++-
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998873
No 173
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.92 E-value=0.0043 Score=41.32 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
|++++|.++||||+|+++.+.=
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999998863
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0041 Score=43.16 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 175
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.92 E-value=0.0043 Score=40.99 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
+|+++|.+.|||||++.+++-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~ 21 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG 21 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999998764
No 176
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.91 E-value=0.0098 Score=41.99 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=28.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVL 73 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~ 73 (76)
-+++|.|...||||||+++.+... ..-+.+...+++++++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~ 72 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLV 72 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeee
Confidence 468999999999999999998542 2334444556666654
No 177
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.91 E-value=0.0042 Score=42.27 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=19.1
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+.+.|..+||||||++.+.-..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999987764
No 178
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.90 E-value=0.0043 Score=42.55 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988765
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.90 E-value=0.0043 Score=42.79 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=25.0
Q ss_pred ccceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.-.+.|+|..+||||||++.++-.. +--+.+++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 60 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQ 60 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 3367899999999999999998663 223455443
No 180
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90 E-value=0.0044 Score=42.47 Aligned_cols=23 Identities=13% Similarity=-0.096 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++-.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999988754
No 181
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.89 E-value=0.0082 Score=43.20 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 182
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0044 Score=42.46 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=23.6
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++=.. +--+.+|+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK 62 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC
Confidence 46899999999999999998542 333445543
No 183
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0085 Score=43.29 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=23.3
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.|+|..+|||||+++.++-. ++--+.+++
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g 65 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRG 65 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 5689999999999999999843 333344444
No 184
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.88 E-value=0.0045 Score=41.83 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++=.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999998765
No 185
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.87 E-value=0.0046 Score=42.93 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.9
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|...+|||||+++++.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~ 24 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE 24 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47999999999999999999864
No 186
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.87 E-value=0.0044 Score=42.58 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=23.2
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.|+|..+||||||++.++-. ++--+.+++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 61 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 5789999999999999988744 233345554
No 187
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.86 E-value=0.0047 Score=41.62 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|..++|||||+.+++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~ 21 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL 21 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999874
No 188
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.86 E-value=0.01 Score=41.71 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=25.4
Q ss_pred ceeeccCCCccchhhhhhhhhh--------cccceeeeCcee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT--------TSKPMMINNNTV 68 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~--------~~~~~~~~~~~~ 68 (76)
.+.|+|..+|||||+++.++=. ++--+.+|+..+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 72 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDI 72 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEc
Confidence 5689999999999999999843 334456666443
No 189
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.86 E-value=0.0046 Score=40.85 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=26.7
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLV 74 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (76)
-+.++|..+||||||++.++-.. +-.+.++++ ..++++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~ 69 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFE 69 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEc
Confidence 45799999999999999988654 223445442 3555543
No 190
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.86 E-value=0.0046 Score=42.53 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+|||||+++.++-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999998865
No 191
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.85 E-value=0.0045 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 192
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.85 E-value=0.0047 Score=42.01 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999854
No 193
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.85 E-value=0.0049 Score=43.13 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+.+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~ 35 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh
Confidence 4578999999999999999998763
No 194
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0046 Score=43.00 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=24.0
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-. ++--+.+++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 63 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGT 63 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE
Confidence 5789999999999999999854 2333555543
No 195
>KOG0073|consensus
Probab=95.85 E-value=0.0068 Score=43.61 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.3
Q ss_pred CccceeeccCCCccchhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~ 53 (76)
+++++|+||--.|||+|+++.+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl 36 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKL 36 (185)
T ss_pred heeEEEEEecCCCCchhHHHHh
Confidence 3899999999999999999875
No 196
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0047 Score=41.50 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.+.|..+||||||++.++-..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 197
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.84 E-value=0.0048 Score=43.14 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-++|.|...||||||+++.+..
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4589999999999999999853
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.84 E-value=0.0039 Score=38.08 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.4
Q ss_pred eccCCCccchhhhhhhhhh
Q psy6625 38 LLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 38 LLGaGESGKST~~~~~~~~ 56 (76)
++|..+||||||+++++-.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5799999999999998753
No 199
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.01 Score=41.86 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++=.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 200
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.83 E-value=0.0048 Score=42.33 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|+.++|.+++||||++++++-
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRG 23 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999975
No 201
>COG4639 Predicted kinase [General function prediction only]
Probab=95.83 E-value=0.0045 Score=44.00 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=15.3
Q ss_pred eeeccCCCccchhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLA 52 (76)
Q Consensus 36 LLLLGaGESGKST~~~~ 52 (76)
++|-|+..||||||++.
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57889999999999986
No 202
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.83 E-value=0.0044 Score=40.27 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.8
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
++++|.+++|||||+.+++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~ 20 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT 20 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh
Confidence 57899999999999998765
No 203
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.83 E-value=0.0051 Score=40.78 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+||||++...+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 5899999999999999998754
No 204
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.01 Score=41.76 Aligned_cols=22 Identities=14% Similarity=-0.056 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.+.-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998755
No 205
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.0091 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++++.-..
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999988653
No 206
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.82 E-value=0.0047 Score=43.83 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=20.4
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++-.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36799999999999999998865
No 207
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0047 Score=43.47 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988855
No 208
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.0048 Score=42.63 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998865
No 209
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.81 E-value=0.0049 Score=42.73 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=23.3
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.|+|..+|||||+++.++=. ++--..+|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 61 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 5789999999999999999854 233344544
No 210
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.81 E-value=0.0049 Score=42.57 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.+|-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999999954
No 211
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=95.81 E-value=0.0052 Score=41.14 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|...+|||+|+.+.+.
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~ 23 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTT 23 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999988775
No 212
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.80 E-value=0.0049 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999999865
No 213
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.005 Score=42.97 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999855
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.005 Score=42.61 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.+.=.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
No 215
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.79 E-value=0.0052 Score=39.15 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
+++++|...+||||++.+++.-
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5799999999999999988753
No 216
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.79 E-value=0.0067 Score=38.85 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=25.1
Q ss_pred eeeccCCCccchhhhhhhhhhcccceee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMMI 63 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~~ 63 (76)
+||.|..++|||+++++++-....|++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 6899999999999999999888877754
No 217
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.005 Score=43.37 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.++-..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 47899999999999999999653
No 218
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0051 Score=42.20 Aligned_cols=22 Identities=18% Similarity=0.017 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 219
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.76 E-value=0.0054 Score=41.67 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.+.|+.+|||||+++.++-.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999988643
No 220
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.76 E-value=0.0074 Score=41.55 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=21.9
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.+|++|+..||||||...++--..+|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 57999999999999999987655544
No 221
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.75 E-value=0.0053 Score=43.09 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998854
No 222
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.75 E-value=0.0097 Score=42.66 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=28.1
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
-.+.|+|..+|||||+++.++-.. +--+.+++ ...||++.|
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-~~~i~~v~q 74 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-KLRIGYVPQ 74 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-ccCEEEecc
Confidence 367899999999999999988542 22233433 335676655
No 223
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.75 E-value=0.0063 Score=40.95 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred eeeccCCCccchhhhhhhhhhcccce
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
|+|-|.+.|||||+.+.++--...|.
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 68889999999999999987766553
No 224
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.75 E-value=0.0054 Score=42.42 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999865
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.74 E-value=0.0053 Score=42.79 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=24.6
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-.+.|+|..+||||||++.++-.. +--+.+|+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 64 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGH 64 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCe
Confidence 367999999999999999988542 334555553
No 226
>PRK02496 adk adenylate kinase; Provisional
Probab=95.74 E-value=0.0056 Score=41.24 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.5
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
.|++++|..+|||||+++.+.-.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999877543
No 227
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=95.74 E-value=0.012 Score=46.47 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=28.6
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
.+.|+|..+||||||++.++-.. +--+.+ ++.+.||++.|
T Consensus 350 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~~~i~~v~q 392 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQ 392 (552)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCceEEEEEeC
Confidence 46799999999999999998542 222344 34457888766
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73 E-value=0.0056 Score=41.23 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.++|..+||||||++.+.=..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999987653
No 229
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.0054 Score=42.80 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988755
No 230
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=95.73 E-value=0.0048 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=22.6
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|.+++|||+|+.+.+.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Confidence 3568999999999999999999886
No 231
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.0054 Score=43.90 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+|||||+++.++-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999854
No 232
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.72 E-value=0.0058 Score=38.68 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
|+.++|.+.+||||++.+++--
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999987643
No 233
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.72 E-value=0.0056 Score=42.61 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998865
No 234
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0054 Score=42.83 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999998754
No 235
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0056 Score=42.58 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987553
No 236
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.72 E-value=0.0056 Score=42.38 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=24.5
Q ss_pred ccceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
--.+.|+|..+||||||++.++-. ++--..+++
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 75 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 346799999999999999999854 233345554
No 237
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.72 E-value=0.0057 Score=41.84 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 238
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0058 Score=41.00 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=20.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+||||||++.++=..
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998663
No 239
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0056 Score=42.89 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998763
No 240
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.70 E-value=0.0058 Score=41.04 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.++|..+||||||++.++-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5689999999999999999865
No 241
>PRK14528 adenylate kinase; Provisional
Probab=95.70 E-value=0.0078 Score=41.37 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.2
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
+++++|+++|||||+++.++-...-|.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 689999999999999999885544443
No 242
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.69 E-value=0.0044 Score=40.99 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=17.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
||.+.|+..|||||++.++--.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999988755
No 243
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.69 E-value=0.0058 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.096 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36799999999999999998854
No 244
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=95.69 E-value=0.0052 Score=40.04 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=17.2
Q ss_pred eeeccCCCccchhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~ 54 (76)
++++|.-.||||||+.++-
T Consensus 1 V~v~G~~ssGKSTliNaLl 19 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALL 19 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999984
No 245
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.68 E-value=0.006 Score=40.98 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.++|..+|||||+++.++-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998765
No 246
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.013 Score=42.02 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 46799999999999999998653
No 247
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=95.67 E-value=0.0029 Score=40.77 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=0.0
Q ss_pred eeccCCCccchhhhhhhhhhc
Q psy6625 37 LLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 37 LLLGaGESGKST~~~~~~~~~ 57 (76)
++.|...|||||+++|+...-
T Consensus 3 viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 578999999999999998764
No 248
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.013 Score=41.26 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=24.7
Q ss_pred ceeeccCCCccchhhhhhhhhh--------cccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT--------TSKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~--------~~~~~~~~~~~ 67 (76)
.+.|+|..+|||||+++.+.-. ++-.+.+++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN 72 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEe
Confidence 5789999999999999998854 23445665543
No 249
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.0058 Score=43.85 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=24.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~ 67 (76)
.+.|+|..+||||||++.++-.. +--+.+++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 64 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEE
Confidence 57899999999999999988543 2335555543
No 250
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.66 E-value=0.006 Score=42.98 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++-.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36799999999999999988865
No 251
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.65 E-value=0.0058 Score=42.60 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
--+.|+|..+|||||+++.++=.
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35789999999999999998865
No 252
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.65 E-value=0.0068 Score=41.67 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=21.9
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+...+.+-|.++||||||++++.-.-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999987654
No 253
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.65 E-value=0.0061 Score=42.52 Aligned_cols=22 Identities=9% Similarity=-0.075 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998854
No 254
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.64 E-value=0.0064 Score=39.85 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
.+.|+|..+|||||++..++
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57899999999999999976
No 255
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.64 E-value=0.0062 Score=42.87 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
--.+.|+|..+|||||+++.++-.
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999998854
No 256
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0063 Score=42.62 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=24.0
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++=. ++--+.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 64 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 5789999999999999998854 2333555544
No 257
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0063 Score=42.71 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998854
No 258
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.62 E-value=0.0063 Score=44.04 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=20.8
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
--.+.++|..+||||||++.++=.
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 336899999999999999998865
No 259
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.62 E-value=0.0064 Score=42.51 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=23.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+||||||++.++-.. +--+.+++.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~ 64 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT 64 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCe
Confidence 57899999999999999988542 333455543
No 260
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.62 E-value=0.0067 Score=41.50 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=19.3
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
++|.|+..||||||+++.++..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 5899999999999999998543
No 261
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.62 E-value=0.0076 Score=42.18 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=22.3
Q ss_pred eeeccCCCccchhhhhhhhhhccccee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
|+|=|++-|||||+++++......|.+
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~~~p~~ 30 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERLPEPWL 30 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHSSS-EE
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcCCeE
Confidence 577799999999999999999999854
No 262
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.0067 Score=39.89 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=20.7
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.++|..+||||||+++++-..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998654
No 263
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.0064 Score=42.84 Aligned_cols=23 Identities=4% Similarity=-0.094 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 264
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.59 E-value=0.0067 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.++|..+|||||+++.++-.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999999754
No 265
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.58 E-value=0.013 Score=43.92 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||++++++-..
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 47899999999999999998665
No 266
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=95.58 E-value=0.0075 Score=40.93 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.0
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|.+.+|||+++...+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~ 25 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTT 25 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999998774
No 267
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.58 E-value=0.0068 Score=42.38 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=18.4
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
+|||+|..+|||||+..++.
T Consensus 2 ~IlllG~tGsGKSs~~N~il 21 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL 21 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999874
No 268
>PRK14526 adenylate kinase; Provisional
Probab=95.58 E-value=0.007 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
+++|+|+.+|||||+++.++-..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887443
No 269
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.015 Score=41.71 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++-
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999983
No 270
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.57 E-value=0.0066 Score=43.43 Aligned_cols=23 Identities=17% Similarity=-0.074 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 35789999999999999998855
No 271
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.56 E-value=0.007 Score=42.21 Aligned_cols=22 Identities=14% Similarity=-0.044 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
..+++|..+|||||++.+++-.
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999843
No 272
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.56 E-value=0.007 Score=41.98 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.7
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++.|+.+|||||++.++.--
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999985533
No 273
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.55 E-value=0.0068 Score=43.08 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=19.3
Q ss_pred eeeccCCCccchhhhhhhhhhcc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~ 58 (76)
+-+.|..+||||||++.+.-...
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999887653
No 274
>PRK10908 cell division protein FtsE; Provisional
Probab=95.54 E-value=0.0071 Score=41.85 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+||||||++.++-..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999988653
No 275
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.0069 Score=43.55 Aligned_cols=22 Identities=23% Similarity=-0.041 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999854
No 276
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.54 E-value=0.007 Score=43.87 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.+|-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 277
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.53 E-value=0.007 Score=45.09 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=22.3
Q ss_pred ceeeccCCCccchhhhhhhh---hhcccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALC---TTTSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~---~~~~~~~~~~~ 65 (76)
.+.++|.++|||||||..+= .+++--..|++
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 46889999999999996432 34555566665
No 278
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.011 Score=45.94 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 290 ~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999654
No 279
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.52 E-value=0.0071 Score=41.50 Aligned_cols=22 Identities=14% Similarity=0.002 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999998765
No 280
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.51 E-value=0.0072 Score=43.40 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998855
No 281
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.014 Score=42.89 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5679999999999999999855
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.51 E-value=0.0076 Score=40.38 Aligned_cols=22 Identities=23% Similarity=0.055 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999988744
No 283
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.0077 Score=40.63 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.+.=.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999998744
No 284
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.49 E-value=0.0076 Score=41.21 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=24.3
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~~ 67 (76)
.+.++|..+||||||++.+.=. ++--+.+|+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 63 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKS 63 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCc
Confidence 5689999999999999998754 23335555543
No 285
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.0075 Score=42.52 Aligned_cols=21 Identities=5% Similarity=-0.092 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999999974
No 286
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.0073 Score=44.74 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999965
No 287
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.49 E-value=0.0077 Score=40.76 Aligned_cols=23 Identities=17% Similarity=-0.071 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.++|..+||||||++.++-..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988653
No 288
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.49 E-value=0.0076 Score=42.16 Aligned_cols=22 Identities=18% Similarity=0.002 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998854
No 289
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.48 E-value=0.0074 Score=43.34 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.3
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++.|..+|||||+.+.+.-.-
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 5677999999999999876544
No 290
>PRK06762 hypothetical protein; Provisional
Probab=95.48 E-value=0.0079 Score=39.68 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=18.5
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++-|..+|||||+++.++---
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5778999999999999887543
No 291
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.48 E-value=0.012 Score=40.66 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=20.5
Q ss_pred eeeccCCCccchhhhhhhhhhcccc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+|++|...||||+|..++..-.+.|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 5899999999999999987554433
No 292
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.48 E-value=0.0076 Score=42.18 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=21.0
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+|||||+++.++-..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCc
Confidence 367899999999999999988763
No 293
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.47 E-value=0.0079 Score=40.85 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
|++++|...+|||||+..++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~ 21 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999998864
No 294
>PLN03118 Rab family protein; Provisional
Probab=95.47 E-value=0.008 Score=41.20 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.1
Q ss_pred CccceeeccCCCccchhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~ 54 (76)
..+|++++|.+.+|||||+.++.
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~ 35 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFI 35 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999999886
No 295
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.47 E-value=0.0079 Score=41.41 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.++|..+||||||++.++=.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 296
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.46 E-value=0.0079 Score=41.66 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.+.-..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999988665
No 297
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.46 E-value=0.008 Score=41.00 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.++|..+||||||++.++=.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988754
No 298
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.46 E-value=0.013 Score=45.55 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=25.8
Q ss_pred ccceeeccCCCccchhhhhhhhhh---cccceeeeCce
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT---TSKPMMINNNT 67 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~~ 67 (76)
--++.+.|..+|||||+++.++-. ++--..||+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 347799999999999999998743 33345666543
No 299
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.46 E-value=0.0084 Score=41.30 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.++|.|+..||||||++++..
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 389999999999999999773
No 300
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.46 E-value=0.0089 Score=35.19 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=18.4
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+.+-|...|||||+++++.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999998866
No 301
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.46 E-value=0.008 Score=41.45 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=23.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~ 65 (76)
.+.++|..+||||||++.++-.. +--+.+++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 63 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG 63 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 56899999999999999988653 33344544
No 302
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.45 E-value=0.0081 Score=41.94 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999998855
No 303
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.44 E-value=0.0081 Score=40.97 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=24.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +-.+.+++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 62 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc
Confidence 57899999999999999988653 333455543
No 304
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.44 E-value=0.0081 Score=41.33 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.+.-..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999987653
No 305
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.44 E-value=0.008 Score=42.67 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998854
No 306
>PRK00089 era GTPase Era; Reviewed
Probab=95.44 E-value=0.013 Score=42.26 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=23.1
Q ss_pred ccceeeccCCCccchhhhhhhh-----hhcccce
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC-----TTTSKPM 61 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~-----~~~~~~~ 61 (76)
.-.+.++|...||||||+++++ +++.+|-
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~ 38 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ 38 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCC
Confidence 4568999999999999999885 4555553
No 307
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.018 Score=41.92 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=24.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.+|-.. +--+.+++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~ 69 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGY 69 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 56799999999999999999653 333555543
No 308
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.008 Score=43.70 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=24.3
Q ss_pred cceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
-.+.|+|..+|||||+++.+|-. ++--+.+++
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g 68 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD 68 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 35789999999999999999854 333345554
No 309
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.42 E-value=0.009 Score=43.01 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
++.|+|...+||||++.+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~ 21 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH 21 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999986
No 310
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.42 E-value=0.018 Score=41.46 Aligned_cols=22 Identities=5% Similarity=-0.096 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.++|..+|||||+++.++-.
T Consensus 53 ~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5689999999999999999755
No 311
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.0084 Score=41.27 Aligned_cols=23 Identities=4% Similarity=-0.133 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.+.-.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998754
No 312
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.41 E-value=0.0082 Score=42.86 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=24.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~ 64 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR 64 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 57899999999999999998763 223455553
No 313
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.40 E-value=0.0085 Score=42.02 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 314
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.0084 Score=42.47 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 315
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.018 Score=46.59 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
++.|+|..+||||||++.++-.. +--+.+++ .+.||++.|
T Consensus 340 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 67799999999999999988543 22234443 367887765
No 316
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.38 E-value=0.0086 Score=41.50 Aligned_cols=20 Identities=10% Similarity=-0.086 Sum_probs=17.7
Q ss_pred cceeeccCCCccchhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~ 53 (76)
-.+.|+|..+|||||+++.+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999875
No 317
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.37 E-value=0.009 Score=40.99 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=20.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+||||||++.++=..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999988664
No 318
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.36 E-value=0.0089 Score=41.03 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=24.3
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-. ++-...+++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~ 63 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGE 63 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 5789999999999999998854 3444555543
No 319
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.36 E-value=0.0088 Score=42.93 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.++-..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999987653
No 320
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.0086 Score=43.41 Aligned_cols=22 Identities=9% Similarity=-0.153 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999855
No 321
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.0089 Score=42.74 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++-
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999975
No 322
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.35 E-value=0.009 Score=42.18 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
No 323
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=95.34 E-value=0.0087 Score=41.60 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.++|..+|||||++++++.
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHhee
Confidence 578999999999999999884
No 324
>PRK04213 GTP-binding protein; Provisional
Probab=95.33 E-value=0.01 Score=39.84 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..|++++|-..+||||++.+++-
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999999874
No 325
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=95.33 E-value=0.009 Score=43.05 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||+|+.+.+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~ 22 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG 22 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc
Confidence 5899999999999999999973
No 326
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.009 Score=43.17 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+||||||++.++-
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999984
No 327
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.0092 Score=42.94 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987653
No 328
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.019 Score=42.81 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=29.6
Q ss_pred ceeeccCCCccchhhhhhhhh---hcccceeeeCcee-----EEeeeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT---TTSKPMMINNNTV-----EIGVLVQK 76 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~ 76 (76)
-+-++|.++|||||+++..-= -++--+.+++..| ++|+..|+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 357899999999999987542 2333455666554 78888774
No 329
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.0091 Score=42.36 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.++|..+||||||++.+.-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999998854
No 330
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.0094 Score=42.87 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++=.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998854
No 331
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.0097 Score=40.79 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.++-..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999887553
No 332
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.0095 Score=42.09 Aligned_cols=22 Identities=14% Similarity=-0.062 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998854
No 333
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.0095 Score=42.07 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++=
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999983
No 334
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.29 E-value=0.0097 Score=41.39 Aligned_cols=22 Identities=14% Similarity=-0.132 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.++|+|..+|||||++++++-.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999855
No 335
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.29 E-value=0.0095 Score=42.37 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=20.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999998654
No 336
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.29 E-value=0.0096 Score=41.65 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=24.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~ 67 (76)
.+.|+|..+|||||+++.++-.. +--+.+++..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 64 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK 64 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 57899999999999999988553 2335555543
No 337
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.29 E-value=0.0067 Score=43.84 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=15.6
Q ss_pred eccCCCccchhhhhhhhhh
Q psy6625 38 LLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 38 LLGaGESGKST~~~~~~~~ 56 (76)
++|+++||||||.+++.-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 4699999999999987643
No 338
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.29 E-value=0.0097 Score=41.87 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999985
No 339
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.26 E-value=0.0098 Score=43.17 Aligned_cols=24 Identities=17% Similarity=-0.071 Sum_probs=20.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+||||||++.++=..
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998664
No 340
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.26 E-value=0.0099 Score=41.63 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.++=.
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999988754
No 341
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.26 E-value=0.0098 Score=42.66 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998653
No 342
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.0096 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.++++|..+|||||+++.+--
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 679999999999999998753
No 343
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.018 Score=43.75 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998865
No 344
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.25 E-value=0.01 Score=41.09 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=23.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++=.. +--..+++.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~ 62 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 57899999999999999988543 233455543
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.25 E-value=0.026 Score=38.13 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.2
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+.++|..++|||||+.+++-
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHH
Confidence 456889999999999999999984
No 346
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.01 Score=41.53 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.+.-..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999987653
No 347
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.25 E-value=0.01 Score=40.12 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.+.-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988754
No 348
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.24 E-value=0.01 Score=40.81 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.+.-.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988765
No 349
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.0099 Score=42.89 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+||||||++.++=.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999854
No 350
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.01 Score=41.83 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.+.-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999998765
No 351
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.23 E-value=0.0098 Score=46.60 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=25.8
Q ss_pred ccceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.-|+.+.|..+|||||+++.++-.- +--..+|+.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 4478999999999999999998643 333566653
No 352
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.23 E-value=0.01 Score=42.46 Aligned_cols=23 Identities=17% Similarity=-0.015 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+||||||++.+.-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999988765
No 353
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.22 E-value=0.011 Score=38.40 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=22.2
Q ss_pred cceeeccCCCccchhhhhhhhhhcccce
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
..|+|.|.++|||||+.+.+.-.-.-|.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~ 32 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDF 32 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 4688999999999999998876554443
No 354
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.01 Score=41.67 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5689999999999999999854
No 355
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.21 E-value=0.011 Score=38.71 Aligned_cols=27 Identities=30% Similarity=0.161 Sum_probs=18.0
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-=+++.|..+|||||++.++.---.++
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 347899999999999999766544433
No 356
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.21 E-value=0.011 Score=40.08 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|...+|||+++.+.+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~ 22 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE 22 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998875
No 357
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.019 Score=44.05 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=28.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCcee--------EEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTV--------EIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~ 75 (76)
-+.|+|..+|||||+++.++=.. +--+.+++..+ .||++.|
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 46799999999999999888542 33345554433 3666655
No 358
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.20 E-value=0.011 Score=40.65 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.6
Q ss_pred eeeccCCCccchhhhhhhhhhcccceeeeCce
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMMINNNT 67 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~~~~~~ 67 (76)
+.+.|..+|||||+++.++-... |..|+...
T Consensus 6 i~l~G~sGsGKSTl~~~la~~l~-~~~i~gd~ 36 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFS-AKFIDGDD 36 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-CEEECCcc
Confidence 68899999999999999987654 44665543
No 359
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.20 E-value=0.011 Score=38.93 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=18.2
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+.++|+..|||||+++.++-.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999988754
No 360
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.19 E-value=0.011 Score=42.11 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999854
No 361
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.19 E-value=0.011 Score=41.58 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999854
No 362
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.01 Score=42.39 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999988653
No 363
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.01 Score=43.00 Aligned_cols=23 Identities=17% Similarity=-0.033 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.++|..+||||||++.+|=..
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999999653
No 364
>PLN03110 Rab GTPase; Provisional
Probab=95.18 E-value=0.011 Score=41.14 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.4
Q ss_pred CccceeeccCCCccchhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~ 54 (76)
..+|++++|..++|||||+.++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~ 33 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFT 33 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999998763
No 365
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.18 E-value=0.01 Score=41.19 Aligned_cols=40 Identities=8% Similarity=-0.080 Sum_probs=27.1
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
-.+.|+|..+|||||+++.++-.. +--+.+++ ..||++.|
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~~i~~~~q 68 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG--ITPVYKPQ 68 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC--EEEEEEcc
Confidence 367899999999999999887542 22344443 24565544
No 366
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.16 E-value=0.011 Score=41.56 Aligned_cols=21 Identities=5% Similarity=-0.050 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+||||||++.+.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999884
No 367
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.15 E-value=0.011 Score=42.66 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998854
No 368
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.14 E-value=0.011 Score=45.30 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
--+|+.|+.+|||||++.+++-
T Consensus 135 glilI~GpTGSGKTTtL~aLl~ 156 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIR 156 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999999873
No 369
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.13 E-value=0.011 Score=41.50 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.++|..+|||||+++.++-.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 36789999999999999988753
No 370
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.012 Score=42.37 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56899999999999999988763
No 371
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.10 E-value=0.012 Score=37.83 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=18.1
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
.+.++|...+|||||+.++.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~ 21 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS 21 (170)
T ss_pred CeEEECCCCCCHHHHHHHHh
Confidence 46899999999999999986
No 372
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.012 Score=42.23 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=24.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +--..+|+.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 57899999999999999998552 333455543
No 373
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.10 E-value=0.012 Score=39.78 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=20.4
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||+++.+.+.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~ 23 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK 23 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999875
No 374
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.011 Score=42.81 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=24.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.+|-.. +--+.+++.
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~ 69 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 46899999999999999999653 333455543
No 375
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.012 Score=41.54 Aligned_cols=22 Identities=5% Similarity=-0.118 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5689999999999999998744
No 376
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.10 E-value=0.012 Score=40.17 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=27.2
Q ss_pred ccceeeccCCCccchhhhhhhhhhcc---cceeeeCceeEEeeeee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTS---KPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (76)
--.+.++|..+||||||++.++=... --+.+++ .||++.|
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q 73 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQ 73 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEec
Confidence 33678999999999999998876531 1133333 4666654
No 377
>PLN02674 adenylate kinase
Probab=95.10 E-value=0.023 Score=41.72 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=23.6
Q ss_pred hhCccceeeccCCCccchhhhhhhhhhcc
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.....+++|+|+.+|||+|..+.++-...
T Consensus 28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 28 SKPDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 34457899999999999999998876443
No 378
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.024 Score=44.33 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=27.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
.+.|+|..+|||||+++.+|-.. +--+.+++ ...||++.|
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~~~q 389 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQ 389 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEcc
Confidence 56799999999999999998652 22233333 245777655
No 379
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.011 Score=42.64 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++=.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999854
No 380
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.07 E-value=0.012 Score=42.91 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999999854
No 381
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.06 E-value=0.022 Score=44.30 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=23.7
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~ 65 (76)
.+.|+|..+|||||+++.++-.. +--+.+++
T Consensus 32 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g 65 (501)
T PRK10762 32 VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG 65 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 56899999999999999998653 23345554
No 382
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.06 E-value=0.013 Score=37.69 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
+++++|...+||||++.+++--
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 383
>PRK09087 hypothetical protein; Validated
Probab=95.05 E-value=0.013 Score=41.93 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=18.9
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
+.|-|..+|||||+++++|.
T Consensus 47 l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999994
No 384
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.04 E-value=0.013 Score=41.10 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=19.5
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
+|++++|.+.+||||++.+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~ 21 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT 21 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 589999999999999999986
No 385
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.04 E-value=0.012 Score=42.24 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=20.4
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+|||||+++.++=.
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998865
No 386
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.04 E-value=0.017 Score=44.54 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=27.2
Q ss_pred ceeeccCCCccchhhhhhhhh---hcccceeeeCcee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT---TTSKPMMINNNTV 68 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~---~~~~~~~~~~~~~ 68 (76)
-+.|||.++|||||+|+...= +|+--+.|+++.|
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v 67 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 368899999999999987663 4677788877765
No 387
>KOG2655|consensus
Probab=95.03 E-value=0.021 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=22.2
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+.-|++.|.+++|||||..++|-.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhh
Confidence 577899999999999999999987
No 388
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.01 E-value=0.013 Score=41.62 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=18.7
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++.|.++|||||+++++.--.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999999887543
No 389
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.01 E-value=0.013 Score=42.71 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5689999999999999999854
No 390
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=95.00 E-value=0.052 Score=42.56 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=28.5
Q ss_pred HHHHHHHHHhH-HhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 17 KQIEKNLKEDG-IQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 17 k~IDk~L~kek-k~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.++++.+...+ +.....+|+.++|.+.+||||++.+++-
T Consensus 186 ~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~ 225 (442)
T TIGR00450 186 AELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLK 225 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhC
Confidence 33444444332 3455779999999999999999999973
No 391
>PLN02200 adenylate kinase family protein
Probab=95.00 E-value=0.013 Score=42.06 Aligned_cols=26 Identities=15% Similarity=0.039 Sum_probs=21.0
Q ss_pred ccceeeccCCCccchhhhhhhhhhcc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-..++++|+++|||||+.+.++--..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999988764443
No 392
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=95.00 E-value=0.014 Score=39.91 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=21.9
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+|++++|.+.+|||+++...+.-
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~ 28 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKD 28 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999988753
No 393
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.99 E-value=0.013 Score=42.04 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.7
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+|||||+++.++=..
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 367899999999999999998653
No 394
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=94.99 E-value=0.013 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.023 Sum_probs=21.3
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+|||||+++.++-..
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 357999999999999999998864
No 395
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.99 E-value=0.029 Score=44.40 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=27.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
.+.|+|..+|||||+++.++-.. +--+.+ +..+.||++.|
T Consensus 352 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~~~i~~v~q 394 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVKLAYVDQ 394 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCceEEEEEeC
Confidence 36799999999999999998553 122333 33456777765
No 396
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.99 E-value=0.011 Score=44.07 Aligned_cols=21 Identities=19% Similarity=-0.007 Sum_probs=18.2
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+-++|+.+|||||+|+++.-+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468899999999999988764
No 397
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.98 E-value=0.013 Score=41.69 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=24.3
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-.+.++|..+|||||+++.++=.. +--+.+++.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~ 83 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGI 83 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCE
Confidence 367899999999999999988653 233445443
No 398
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.97 E-value=0.013 Score=43.37 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=21.6
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...-.+++.|..+||||||+++++--
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 34558899999999999999988743
No 399
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.97 E-value=0.022 Score=46.16 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhHHh----hhCccceeeccCCCccchhhhh
Q psy6625 16 SKQIEKNLKEDGIQ----AAKDIKLLLLGEYFSSQMVPSL 51 (76)
Q Consensus 16 Sk~IDk~L~kekk~----~~~evKLLLLGaGESGKST~~~ 51 (76)
-++|+..++..-.. ...---+.|.|+.+|||||+|+
T Consensus 11 ~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 11 KRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred chHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 45666666554433 2233357899999999999999
No 400
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.028 Score=42.20 Aligned_cols=24 Identities=8% Similarity=-0.121 Sum_probs=20.7
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-++.++|..+||||||+++++-..
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368899999999999999998553
No 401
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.013 Score=42.68 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6789999999999999999855
No 402
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.94 E-value=0.014 Score=42.79 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998653
No 403
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.014 Score=41.68 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 44 ~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 44 VTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 404
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.93 E-value=0.014 Score=39.99 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
--.+.|+|..+||||||++.++-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999998854
No 405
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=94.92 E-value=0.014 Score=42.22 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999854
No 406
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=94.92 E-value=0.015 Score=41.35 Aligned_cols=22 Identities=18% Similarity=-0.035 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-..++|..+|||||++.|+|-.
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999976
No 407
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=94.90 E-value=0.014 Score=41.34 Aligned_cols=32 Identities=16% Similarity=-0.032 Sum_probs=23.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~ 63 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV 63 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCE
Confidence 56899999999999999987542 333455543
No 408
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.90 E-value=0.014 Score=41.43 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.++-..
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999988654
No 409
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.89 E-value=0.014 Score=42.40 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999754
No 410
>PRK13764 ATPase; Provisional
Probab=94.89 E-value=0.014 Score=48.00 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
--+|+-|+.+||||||++++|--
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~ 280 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEF 280 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998843
No 411
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.88 E-value=0.021 Score=38.81 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.7
Q ss_pred cceeeccCCCccchhhhhhhhhhcccce
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
.+|+++|..+|||||+.+.+.-...-|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~ 32 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcE
Confidence 4689999999999999999987666554
No 412
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.015 Score=40.87 Aligned_cols=23 Identities=13% Similarity=-0.063 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.+.=..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46899999999999999988653
No 413
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.86 E-value=0.014 Score=45.02 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 31 SWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998865
No 414
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=94.86 E-value=0.015 Score=41.33 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||||+.+++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~ 22 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME 22 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998764
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.015 Score=40.09 Aligned_cols=24 Identities=29% Similarity=0.116 Sum_probs=20.6
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+|||||+++.++-..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 367899999999999999987653
No 416
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.84 E-value=0.016 Score=40.75 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+.+|||+++..++-
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~ 22 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK 22 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999998874
No 417
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.81 E-value=0.014 Score=39.91 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=18.5
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++.|.++|||||+++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 467899999999999988766
No 418
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.81 E-value=0.028 Score=42.64 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=24.6
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~ 67 (76)
.+.|+|..+|||||+++.++=.. +--+.+++..
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 67 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD 67 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEE
Confidence 57899999999999999988653 3334555543
No 419
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.016 Score=42.05 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.++=.
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999854
No 420
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.80 E-value=0.017 Score=38.13 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=18.8
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
++++|.+.+||||++.+++.-
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998743
No 421
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.80 E-value=0.04 Score=44.51 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=33.6
Q ss_pred CccceeeccCCCccchhhhhhh---hhhcccceeeeCceeEEeeeeeC
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLAL---CTTTSKPMMINNNTVEIGVLVQK 76 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (76)
+.-||-++|..++||||+++.+ -.-. .....-..+|.||++-|.
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEeh
Confidence 4568889999999999999988 3333 444555667999998773
No 422
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.80 E-value=0.016 Score=42.46 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=23.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~ 65 (76)
.+.|+|..+|||||+++.++-.. +--+.+++
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 54 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG 54 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 46799999999999999998543 33344544
No 423
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.032 Score=43.40 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 424
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.79 E-value=0.017 Score=39.33 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
+|+|+|-.++||||+..+++
T Consensus 2 ~i~lvG~~g~GKSsl~N~il 21 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL 21 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh
Confidence 68999999999999999986
No 425
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.79 E-value=0.016 Score=43.03 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=15.2
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
|-.+|+++|||||||. ||
T Consensus 35 isIIGsSGSGKSTfLR--Ci 52 (256)
T COG4598 35 ISIIGSSGSGKSTFLR--CI 52 (256)
T ss_pred EEEecCCCCchhHHHH--HH
Confidence 4678999999999995 65
No 426
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.016 Score=40.61 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.3
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.|+|..+||||||++.++=. ++--..+++
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g 60 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNG 60 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 5789999999999999998754 233344544
No 427
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.78 E-value=0.016 Score=41.07 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999988653
No 428
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.78 E-value=0.016 Score=42.07 Aligned_cols=23 Identities=13% Similarity=-0.061 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+||||||++.++-..
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~ 56 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGIL 56 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 429
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.78 E-value=0.016 Score=42.67 Aligned_cols=22 Identities=9% Similarity=-0.079 Sum_probs=18.6
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+-+.|..+||||||++.++-.-
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999998553
No 430
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.78 E-value=0.036 Score=40.43 Aligned_cols=23 Identities=4% Similarity=-0.117 Sum_probs=19.7
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+.|+|..+|||||+++.+.-.
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999998743
No 431
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.77 E-value=0.015 Score=39.72 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=18.0
Q ss_pred eeccCCCccchhhhhhhhhhcc
Q psy6625 37 LLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 37 LLLGaGESGKST~~~~~~~~~~ 58 (76)
-+=|.+.||||||.+++...-.
T Consensus 3 gI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 3 GIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4568999999999999876544
No 432
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.76 E-value=0.036 Score=41.30 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.--+|+-|..+||||||+.+++--
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998743
No 433
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.016 Score=43.26 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=23.5
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMIN 64 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~ 64 (76)
.+.|+|..+|||||+++.++=. ++--+.++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~ 86 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVG 86 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 5789999999999999999865 33344554
No 434
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.76 E-value=0.037 Score=43.31 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 314 ~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 314 TLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 46899999999999999998753
No 435
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=94.75 E-value=0.016 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++=..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~ 47 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLT 47 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999987653
No 436
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.016 Score=45.28 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=28.1
Q ss_pred cceeeccCCCccchhhhhhhhhhcc---cceeeeCceeEEeeeee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTS---KPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (76)
-.+.|+|..+|||||+++.++-... --+.+++. ..||++.|
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q 71 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQ 71 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEec
Confidence 3689999999999999999986431 22334432 34676655
No 437
>PLN03073 ABC transporter F family; Provisional
Probab=94.73 E-value=0.036 Score=45.94 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=27.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
++.|+|..+||||||++.++-.. +--+.++ ....||++-|
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~-~~~~igyv~Q 579 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRS-AKVRMAVFSQ 579 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEEC-CceeEEEEec
Confidence 56799999999999999998653 2222332 3356777665
No 438
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.71 E-value=0.018 Score=39.09 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=18.3
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
|.|.|..+|||||++..+.-
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 439
>PTZ00301 uridine kinase; Provisional
Probab=94.70 E-value=0.017 Score=41.16 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=14.2
Q ss_pred eeeccCCCccchhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~ 53 (76)
|.+=|.+.||||||++++
T Consensus 6 IgIaG~SgSGKTTla~~l 23 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNI 23 (210)
T ss_pred EEEECCCcCCHHHHHHHH
Confidence 345579999999999755
No 440
>PRK14529 adenylate kinase; Provisional
Probab=94.68 E-value=0.018 Score=41.62 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=20.9
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+|+++|+.+|||||.++.++-...-|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~ 27 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA 27 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 68999999999999998776544433
No 441
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.66 E-value=0.017 Score=43.45 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++=.
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999998754
No 442
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.66 E-value=0.019 Score=40.11 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=18.4
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
-.+++|..+|||||++.++|
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999987
No 443
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.015 Score=43.64 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=15.2
Q ss_pred eeccCCCccchhhhhhh
Q psy6625 37 LLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 37 LLLGaGESGKST~~~~~ 53 (76)
-|+|.++|||||||+.+
T Consensus 37 AlIGPSGcGKST~LR~l 53 (253)
T COG1117 37 ALIGPSGCGKSTLLRCL 53 (253)
T ss_pred EEECCCCcCHHHHHHHH
Confidence 67899999999999875
No 444
>PRK06893 DNA replication initiation factor; Validated
Probab=94.65 E-value=0.019 Score=40.68 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-++|.|..++||||++++.|--
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 445
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.65 E-value=0.018 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.073 Sum_probs=19.1
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
++|.|+.+|||||++.+++---
T Consensus 81 l~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999987544
No 446
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=94.65 E-value=0.019 Score=39.65 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=19.2
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
+|+.++|.+.+|||+|+..+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~ 21 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFL 21 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999998865
No 447
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=94.63 E-value=0.018 Score=45.41 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=28.6
Q ss_pred cceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
-.+.|+|..+||||||++.++=.. +--+.+++ ...||++.|
T Consensus 32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q 75 (552)
T TIGR03719 32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQ 75 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEec
Confidence 367899999999999999998553 11233433 245777665
No 448
>PRK08727 hypothetical protein; Validated
Probab=94.62 E-value=0.019 Score=40.83 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.1
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
++|.|..+|||||++++.|.-
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.61 E-value=0.018 Score=42.13 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=22.2
Q ss_pred ceeeccCCCccchhhhhhhhh---hcccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT---TTSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~---~~~~~~~~~~ 65 (76)
.+-+.|.++|||||+|..+=- -|+--..+++
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 467899999999999986532 2444455655
No 450
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.019 Score=40.11 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=20.8
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+.|+|..+||||||++.++-..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998663
No 451
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.60 E-value=0.019 Score=42.26 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 452
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=94.59 E-value=0.03 Score=43.96 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=23.4
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
--..-|+++|..++|||||..++|-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHh
Confidence 34678899999999999999999977
No 453
>PRK04182 cytidylate kinase; Provisional
Probab=94.59 E-value=0.029 Score=36.77 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=21.7
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.|.+.|..+|||||+.+.+.--..-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 57899999999999999987655444
No 454
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.57 E-value=0.02 Score=39.29 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=18.2
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++-|..+||||||+.++.-.
T Consensus 2 i~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999988765
No 455
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.56 E-value=0.02 Score=38.38 Aligned_cols=22 Identities=18% Similarity=-0.044 Sum_probs=19.0
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+.++|.++||||||+..+....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6789999999999999887653
No 456
>PRK13947 shikimate kinase; Provisional
Probab=94.55 E-value=0.029 Score=36.92 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=22.9
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
+|+|.|..+|||||+.+.+.-...-|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 589999999999999999877666654
No 457
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.55 E-value=0.02 Score=39.60 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=25.1
Q ss_pred cceeeccCCCccchhhhhhhhhh---cccceeeeCc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT---TSKPMMINNN 66 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~---~~~~~~~~~~ 66 (76)
-.+.++|..+||||||++.++-. ++.-+.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~ 67 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQ 67 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 36789999999999999999853 3444566554
No 458
>PRK01184 hypothetical protein; Provisional
Probab=94.55 E-value=0.019 Score=38.53 Aligned_cols=17 Identities=18% Similarity=-0.170 Sum_probs=15.1
Q ss_pred ceeeccCCCccchhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSL 51 (76)
Q Consensus 35 KLLLLGaGESGKST~~~ 51 (76)
.++|.|..+|||||+.+
T Consensus 3 ~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK 19 (184)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999865
No 459
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.55 E-value=0.022 Score=37.07 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=19.7
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
+.+++++|.+.+|||||+.+++
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALV 104 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3489999999999999999986
No 460
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.53 E-value=0.023 Score=41.12 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=24.9
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccceeeeC
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMMINN 65 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~~~~ 65 (76)
..++|+.|.+++||||+++++ ..+|.+|+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~---~~~~~~~~~ 41 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL---PGKTLVLSF 41 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc---CCCCEEEec
Confidence 467999999999999999887 467777764
No 461
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=94.50 E-value=0.02 Score=43.00 Aligned_cols=23 Identities=4% Similarity=-0.089 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 56899999999999999887653
No 462
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.49 E-value=0.02 Score=44.72 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=25.3
Q ss_pred CccceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
+--++.+.|..+|||||+++.++-. ++--..+|+
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 3347899999999999999998844 333355665
No 463
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=94.49 E-value=0.02 Score=38.59 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=22.0
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+...+.++|...|||||++.++....
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 45678999999999999999887544
No 464
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.49 E-value=0.02 Score=38.22 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-.++.|.++||||||+.+++.--+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468889999999999999876433
No 465
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.47 E-value=0.027 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.5
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.....+|+.|..+||||||++++.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHc
Confidence 3456789999999999999999864
No 466
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.47 E-value=0.021 Score=37.91 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=18.4
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++.|..+|||||+++.+--..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5788999999999999876554
No 467
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.022 Score=42.08 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.1
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.|.|.+++|||||++.+|-. |+--..+|+
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~ 63 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC
Confidence 4688999999999999998864 333344444
No 468
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.43 E-value=0.018 Score=37.71 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=17.3
Q ss_pred eccCCCccchhhhhhhhhhc
Q psy6625 38 LLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 38 LLGaGESGKST~~~~~~~~~ 57 (76)
|+|+++|||+|+.+.++--.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999887644
No 469
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.42 E-value=0.028 Score=41.46 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.9
Q ss_pred hCccceeeccCCCccchhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~ 53 (76)
..-.++.++|..+|||||+++.+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~l 33 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSL 33 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 45579999999999999998765
No 470
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.023 Score=40.09 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++=.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998765
No 471
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.023 Score=40.83 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.++|..+||||||++.++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5789999999999999998754
No 472
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.041 Score=44.33 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=23.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~ 386 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQ 386 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCE
Confidence 46799999999999999998553 333445543
No 473
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.39 E-value=0.023 Score=39.83 Aligned_cols=24 Identities=17% Similarity=0.020 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
--++|.|..+|||||+++.++--.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 357899999999999999886543
No 474
>PRK08356 hypothetical protein; Provisional
Probab=94.38 E-value=0.023 Score=38.98 Aligned_cols=20 Identities=5% Similarity=0.002 Sum_probs=17.8
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
-+.+.|..+|||||+.+.+.
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999883
No 475
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.37 E-value=0.022 Score=45.01 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=28.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
.+.|+|..+||||||++.++-.. +--+.++++ ..||++.|
T Consensus 35 ~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-~~i~~v~Q 77 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-IKVGYLPQ 77 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEec
Confidence 57899999999999999998653 222334332 35777665
No 476
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=94.37 E-value=0.024 Score=38.61 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|.+++|||+++...+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~ 23 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS 23 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999998873
No 477
>PRK05642 DNA replication initiation factor; Validated
Probab=94.37 E-value=0.023 Score=40.47 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=19.0
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
--++|-|..++||||++++.|-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3467889999999999999884
No 478
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.32 E-value=0.023 Score=44.70 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=25.1
Q ss_pred ccceeeccCCCccchhhhhhhhhhc--ccceeeeCc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT--SKPMMINNN 66 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~--~~~~~~~~~ 66 (76)
--++.+.|..+|||||+++.++-.- +--..+|+.
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~ 411 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGI 411 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCE
Confidence 3477999999999999999887653 223555553
No 479
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.32 E-value=0.043 Score=39.08 Aligned_cols=28 Identities=18% Similarity=0.019 Sum_probs=22.5
Q ss_pred hCccceeeccCCCccchhhhhhhhhhcc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
+...-+|.-|..+|||||++.++.--..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ccceEEEEECCCccccchHHHHHhhhcc
Confidence 4456789999999999999999865433
No 480
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.30 E-value=0.022 Score=43.62 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.2
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
-+.|+|..+|||||+++.++-. ++--..|++
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G 54 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG 54 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCceEEEECC
Confidence 4689999999999999999854 333345554
No 481
>PRK06620 hypothetical protein; Validated
Probab=94.30 E-value=0.024 Score=40.13 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.5
Q ss_pred ceeeccCCCccchhhhhhhhhhccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
-++|-|..+|||||++++.|-....
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCC
Confidence 4799999999999999998876554
No 482
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.28 E-value=0.11 Score=35.08 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.7
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-++|.|.-++|||||++.++-.-.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999886543
No 483
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=94.27 E-value=0.024 Score=44.53 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=24.9
Q ss_pred ccceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
--++.+.|..+|||||+++.+|-.- +--..+|+.
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 3478999999999999999998432 223455543
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.25 E-value=0.026 Score=37.70 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=19.6
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.-+++.|..+|||||+++.+.--
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346788999999999999887543
No 485
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.25 E-value=0.023 Score=38.82 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.1
Q ss_pred cceeeccCCCccchhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~ 53 (76)
--+|+.|..+||||+++.++
T Consensus 39 ~h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHH
Confidence 36899999999999999853
No 486
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.25 E-value=0.028 Score=39.74 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.8
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.++|.|...||||||+++.+.
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 478999999999999999864
No 487
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.25 E-value=0.024 Score=44.68 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=25.5
Q ss_pred CccceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
..-++.+.|..+|||||+++.++-.- +--..+|+.
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 403 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCE
Confidence 34578999999999999999986432 233566654
No 488
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.24 E-value=0.026 Score=41.44 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=21.0
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.-++|.|.|.+|||||+..++-+-
T Consensus 75 ~~~~~~l~G~g~nGKStl~~~l~~l~ 100 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQNLLSNLL 100 (304)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHh
Confidence 35567888999999999999886554
No 489
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.24 E-value=0.024 Score=46.48 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
=+|.-|++++|||||+||+--.
T Consensus 265 GILIAG~PGaGKsTFaqAlAef 286 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEF 286 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHH
Confidence 4699999999999999998643
No 490
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.23 E-value=0.027 Score=39.68 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.7
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
++|.|+..|||||++++++..
T Consensus 32 ~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 32 HIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 491
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=94.23 E-value=0.039 Score=35.28 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.++|...|||||++.+++.-.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~ 24 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN 24 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc
Confidence 37899999999999999997543
No 492
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.22 E-value=0.027 Score=37.58 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.1
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+.+.|..+|||||+.+++.-..
T Consensus 7 i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5778999999999998876543
No 493
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.21 E-value=0.03 Score=38.67 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-+++.|.++||||||++++|.-..
T Consensus 21 i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 21 ITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHee
Confidence 358899999999999999986543
No 494
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.036 Score=40.57 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=22.0
Q ss_pred eeeccCCCccchhhhhhhhhhcc--cceeee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTS--KPMMIN 64 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~--~~~~~~ 64 (76)
+.+=|+++||||||++.++-.-. ++.+|.
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~~~~~~I~ 41 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVEKVVVIS 41 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCcceEee
Confidence 44557999999999999998766 444543
No 495
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.21 E-value=0.024 Score=37.21 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=19.9
Q ss_pred eeeccCCCccchhhhhhhhhhccc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~ 59 (76)
.++.|..++||||++.+++..-..
T Consensus 22 ~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 22 NVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 478899999999999998876533
No 496
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=94.18 E-value=0.025 Score=43.76 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 288 ~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 288 ILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHhCC
Confidence 5789999999999999999855
No 497
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=94.17 E-value=0.025 Score=43.65 Aligned_cols=22 Identities=5% Similarity=-0.035 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 288 ~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4579999999999999999864
No 498
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.025 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.6
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||++++++-..
T Consensus 44 ~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 44 TLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998664
No 499
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.15 E-value=0.028 Score=39.65 Aligned_cols=23 Identities=9% Similarity=-0.187 Sum_probs=18.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+++.|.++|||||++..+.--.
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46888999999999998776543
No 500
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=94.14 E-value=0.027 Score=42.35 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||++++++-.
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4679999999999999998764
Done!