Query psy6625
Match_columns 76
No_of_seqs 103 out of 583
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:59:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1azs_C GS-alpha; complex (lyas 99.8 5E-20 1.7E-24 140.2 1.5 60 1-60 1-67 (402)
2 1cip_A Protein (guanine nucleo 99.8 1.6E-19 5.3E-24 134.5 2.0 59 2-60 1-59 (353)
3 1zcb_A G alpha I/13; GTP-bindi 99.7 4.6E-18 1.6E-22 126.9 1.9 59 1-59 1-59 (362)
4 3ohm_A Guanine nucleotide-bind 99.2 5.7E-12 1.9E-16 93.5 2.0 33 28-60 2-34 (327)
5 4fid_A G protein alpha subunit 99.1 1.7E-11 5.7E-16 91.6 2.0 30 31-60 3-32 (340)
6 2xtz_A Guanine nucleotide-bind 98.7 3.1E-09 1.1E-13 79.1 1.5 30 31-60 7-36 (354)
7 1z2a_A RAS-related protein RAB 97.3 8.1E-05 2.8E-09 46.0 1.8 25 31-55 3-27 (168)
8 2ce2_X GTPase HRAS; signaling 97.2 9.8E-05 3.3E-09 45.1 1.5 23 33-55 3-25 (166)
9 1upt_A ARL1, ADP-ribosylation 97.2 9.6E-05 3.3E-09 45.9 1.5 26 30-55 4-29 (171)
10 2erx_A GTP-binding protein DI- 97.2 0.00012 4.3E-09 45.2 1.7 24 32-55 2-25 (172)
11 1u8z_A RAS-related protein RAL 97.2 0.00013 4.6E-09 44.7 1.8 24 32-55 3-26 (168)
12 1c1y_A RAS-related protein RAP 97.2 0.00014 4.6E-09 44.9 1.8 24 32-55 2-25 (167)
13 1ky3_A GTP-binding protein YPT 97.2 0.00014 4.7E-09 45.5 1.7 25 31-55 6-30 (182)
14 1kao_A RAP2A; GTP-binding prot 97.2 0.00015 5E-09 44.5 1.7 24 32-55 2-25 (167)
15 1z0j_A RAB-22, RAS-related pro 97.1 9.6E-05 3.3E-09 45.7 0.8 26 31-56 4-29 (170)
16 1z08_A RAS-related protein RAB 97.1 0.00012 4.2E-09 45.4 1.2 25 31-55 4-28 (170)
17 3q72_A GTP-binding protein RAD 97.1 0.00015 5.1E-09 45.0 1.6 22 33-54 2-23 (166)
18 2oil_A CATX-8, RAS-related pro 97.1 9.1E-05 3.1E-09 47.5 0.5 31 25-55 17-47 (193)
19 2zej_A Dardarin, leucine-rich 97.1 0.00016 5.4E-09 46.6 1.7 23 33-55 2-24 (184)
20 2o52_A RAS-related protein RAB 97.1 0.00011 3.7E-09 48.1 0.9 29 26-54 18-46 (200)
21 1r2q_A RAS-related protein RAB 97.1 0.00014 4.7E-09 44.9 1.2 24 32-55 5-28 (170)
22 1z0f_A RAB14, member RAS oncog 97.1 0.00014 4.8E-09 45.3 1.2 25 31-55 13-37 (179)
23 3clv_A RAB5 protein, putative; 97.1 0.00018 6.2E-09 45.3 1.8 26 31-56 5-30 (208)
24 1ek0_A Protein (GTP-binding pr 97.1 0.00015 5.1E-09 44.7 1.2 23 33-55 3-25 (170)
25 2a9k_A RAS-related protein RAL 97.1 0.0002 6.8E-09 44.9 1.8 25 31-55 16-40 (187)
26 1h65_A Chloroplast outer envel 97.1 0.00049 1.7E-08 47.6 3.9 38 18-55 24-61 (270)
27 1g16_A RAS-related protein SEC 97.1 0.00019 6.6E-09 44.3 1.5 24 32-55 2-25 (170)
28 3tw8_B RAS-related protein RAB 97.0 0.00014 4.9E-09 45.4 0.9 26 30-55 6-31 (181)
29 2wkq_A NPH1-1, RAS-related C3 97.0 0.00087 3E-08 46.2 5.0 37 19-55 141-177 (332)
30 2fn4_A P23, RAS-related protei 97.0 0.00019 6.6E-09 44.8 1.5 26 31-56 7-32 (181)
31 3con_A GTPase NRAS; structural 97.0 0.00017 5.8E-09 46.0 1.2 24 32-55 20-43 (190)
32 2hxs_A RAB-26, RAS-related pro 97.0 0.00022 7.5E-09 44.7 1.7 25 31-55 4-28 (178)
33 3kkq_A RAS-related protein M-R 97.0 0.00023 7.8E-09 45.0 1.8 26 30-55 15-40 (183)
34 2efe_B Small GTP-binding prote 97.0 0.00019 6.3E-09 45.1 1.2 25 31-55 10-34 (181)
35 4dsu_A GTPase KRAS, isoform 2B 97.0 0.00018 6.3E-09 45.3 1.2 24 32-55 3-26 (189)
36 2f9l_A RAB11B, member RAS onco 97.0 0.00047 1.6E-08 44.8 3.1 25 32-56 4-28 (199)
37 2fg5_A RAB-22B, RAS-related pr 97.0 0.00017 5.8E-09 46.6 1.0 27 29-55 19-45 (192)
38 3bwd_D RAC-like GTP-binding pr 97.0 0.00028 9.4E-09 44.3 1.9 25 31-55 6-30 (182)
39 3q85_A GTP-binding protein REM 97.0 0.00026 8.9E-09 44.0 1.8 22 33-54 2-23 (169)
40 2nzj_A GTP-binding protein REM 97.0 0.00026 9E-09 44.0 1.7 24 32-55 3-26 (175)
41 3def_A T7I23.11 protein; chlor 97.0 0.00064 2.2E-08 46.9 3.9 32 24-55 27-58 (262)
42 2y8e_A RAB-protein 6, GH09086P 97.0 0.00019 6.5E-09 44.7 1.0 24 32-55 13-36 (179)
43 2bov_A RAla, RAS-related prote 97.0 0.00025 8.5E-09 45.5 1.6 25 31-55 12-36 (206)
44 3oes_A GTPase rhebl1; small GT 97.0 0.00024 8.2E-09 46.2 1.5 26 30-55 21-46 (201)
45 1oix_A RAS-related protein RAB 97.0 0.00046 1.6E-08 45.0 2.9 25 32-56 28-52 (191)
46 2lkc_A Translation initiation 97.0 0.00029 9.9E-09 44.1 1.8 25 31-55 6-30 (178)
47 1mh1_A RAC1; GTP-binding, GTPa 97.0 0.00022 7.5E-09 44.8 1.2 24 32-55 4-27 (186)
48 3bc1_A RAS-related protein RAB 97.0 0.00021 7.1E-09 45.0 1.1 26 30-55 8-33 (195)
49 2iwr_A Centaurin gamma 1; ANK 97.0 0.00022 7.6E-09 44.9 1.2 24 32-55 6-29 (178)
50 2f7s_A C25KG, RAS-related prot 96.9 0.0002 6.7E-09 46.9 0.9 26 30-55 22-47 (217)
51 1vg8_A RAS-related protein RAB 96.9 0.0003 1E-08 45.3 1.7 25 31-55 6-30 (207)
52 2j1l_A RHO-related GTP-binding 96.9 0.00027 9.1E-09 46.8 1.5 27 29-55 30-56 (214)
53 2bme_A RAB4A, RAS-related prot 96.9 0.00021 7.1E-09 45.2 0.9 25 31-55 8-32 (186)
54 1ksh_A ARF-like protein 2; sma 96.9 0.00033 1.1E-08 44.5 1.9 25 31-55 16-40 (186)
55 2wjg_A FEOB, ferrous iron tran 96.9 0.00032 1.1E-08 44.5 1.8 24 32-55 6-29 (188)
56 2gf0_A GTP-binding protein DI- 96.9 0.00027 9.4E-09 45.1 1.4 25 31-55 6-30 (199)
57 2ged_A SR-beta, signal recogni 96.9 0.00034 1.2E-08 44.7 1.9 27 31-57 46-72 (193)
58 3ihw_A Centg3; RAS, centaurin, 96.9 0.00032 1.1E-08 45.5 1.7 26 30-55 17-42 (184)
59 3cbq_A GTP-binding protein REM 96.9 0.0003 1E-08 46.1 1.6 25 30-54 20-44 (195)
60 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00026 8.8E-09 44.3 1.2 25 31-55 5-29 (177)
61 2dyk_A GTP-binding protein; GT 96.9 0.00032 1.1E-08 43.1 1.6 22 34-55 2-23 (161)
62 1r8s_A ADP-ribosylation factor 96.9 0.00034 1.2E-08 43.2 1.7 22 34-55 1-22 (164)
63 3dz8_A RAS-related protein RAB 96.9 0.00015 5.2E-09 46.7 0.0 28 29-56 19-46 (191)
64 1moz_A ARL1, ADP-ribosylation 96.9 0.00025 8.6E-09 44.7 1.0 24 31-54 16-39 (183)
65 2q3h_A RAS homolog gene family 96.9 0.00035 1.2E-08 45.0 1.7 27 29-55 16-42 (201)
66 1z06_A RAS-related protein RAB 96.9 0.00036 1.2E-08 44.7 1.7 25 31-55 18-42 (189)
67 2g6b_A RAS-related protein RAB 96.9 0.00027 9.3E-09 44.3 1.1 25 31-55 8-32 (180)
68 1zj6_A ADP-ribosylation factor 96.9 0.00035 1.2E-08 44.7 1.6 24 31-54 14-37 (187)
69 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00033 1.1E-08 44.8 1.5 25 31-55 5-29 (184)
70 2fh5_B SR-beta, signal recogni 96.9 0.00035 1.2E-08 45.5 1.7 25 31-55 5-29 (214)
71 3c5c_A RAS-like protein 12; GD 96.9 0.00037 1.3E-08 45.0 1.7 25 31-55 19-43 (187)
72 2cxx_A Probable GTP-binding pr 96.9 0.00032 1.1E-08 44.3 1.4 22 34-55 2-23 (190)
73 2atv_A RERG, RAS-like estrogen 96.9 0.0004 1.4E-08 44.9 1.8 25 31-55 26-50 (196)
74 3reg_A RHO-like small GTPase; 96.8 0.00031 1.1E-08 45.2 1.2 26 30-55 20-45 (194)
75 4djt_A GTP-binding nuclear pro 96.8 0.00032 1.1E-08 45.9 1.3 24 31-54 9-32 (218)
76 1nrj_B SR-beta, signal recogni 96.8 0.00043 1.5E-08 45.2 1.9 28 30-57 9-36 (218)
77 1svi_A GTP-binding protein YSX 96.8 0.00039 1.3E-08 44.3 1.6 24 32-55 22-45 (195)
78 2h57_A ADP-ribosylation factor 96.8 0.00036 1.2E-08 44.7 1.3 28 30-57 18-45 (190)
79 1x3s_A RAS-related protein RAB 96.8 0.00035 1.2E-08 44.3 1.2 26 31-56 13-38 (195)
80 2hf9_A Probable hydrogenase ni 96.8 0.0013 4.4E-08 43.3 4.0 27 31-57 36-62 (226)
81 1zd9_A ADP-ribosylation factor 96.8 0.00035 1.2E-08 44.9 1.2 26 30-55 19-44 (188)
82 3t5g_A GTP-binding protein RHE 96.8 0.00033 1.1E-08 44.2 1.0 23 32-54 5-27 (181)
83 3l0i_B RAS-related protein RAB 96.8 0.00015 5E-09 47.1 -0.6 26 30-55 30-55 (199)
84 2h17_A ADP-ribosylation factor 96.8 0.00034 1.2E-08 44.6 1.1 26 30-55 18-43 (181)
85 2cjw_A GTP-binding protein GEM 96.8 0.00095 3.3E-08 43.6 3.2 23 32-54 5-27 (192)
86 3q3j_B RHO-related GTP-binding 96.8 0.00047 1.6E-08 45.8 1.7 25 31-55 25-49 (214)
87 3cph_A RAS-related protein SEC 96.8 0.0005 1.7E-08 44.4 1.7 26 30-55 17-42 (213)
88 2b6h_A ADP-ribosylation factor 96.7 0.00048 1.6E-08 44.8 1.5 25 31-55 27-51 (192)
89 2a5j_A RAS-related protein RAB 96.7 0.00051 1.7E-08 44.2 1.6 26 30-55 18-43 (191)
90 2x77_A ADP-ribosylation factor 96.7 0.0004 1.4E-08 44.3 1.1 24 31-54 20-43 (189)
91 3pqc_A Probable GTP-binding pr 96.7 0.0005 1.7E-08 43.4 1.5 25 32-56 22-46 (195)
92 4gzl_A RAS-related C3 botulinu 96.7 0.00049 1.7E-08 45.2 1.5 25 31-55 28-52 (204)
93 2wji_A Ferrous iron transport 96.7 0.00058 2E-08 43.2 1.8 23 33-55 3-25 (165)
94 2bcg_Y Protein YP2, GTP-bindin 96.7 0.00038 1.3E-08 45.1 0.9 25 31-55 6-30 (206)
95 3tkl_A RAS-related protein RAB 96.7 0.0011 3.9E-08 42.0 3.0 25 31-55 14-38 (196)
96 3t1o_A Gliding protein MGLA; G 96.7 0.00057 2E-08 43.1 1.6 24 31-54 12-35 (198)
97 2ew1_A RAS-related protein RAB 96.7 0.00037 1.3E-08 46.2 0.7 28 28-55 21-48 (201)
98 1gwn_A RHO-related GTP-binding 96.7 0.00056 1.9E-08 45.3 1.5 25 31-55 26-50 (205)
99 1fzq_A ADP-ribosylation factor 96.7 0.00055 1.9E-08 44.0 1.4 25 31-55 14-38 (181)
100 2p5s_A RAS and EF-hand domain 96.7 0.00062 2.1E-08 44.1 1.7 25 31-55 26-50 (199)
101 3gj0_A GTP-binding nuclear pro 96.7 0.00052 1.8E-08 45.2 1.3 26 30-55 12-37 (221)
102 1m2o_B GTP-binding protein SAR 96.7 0.00057 1.9E-08 44.4 1.5 25 31-55 21-45 (190)
103 2hup_A RAS-related protein RAB 96.7 0.00043 1.5E-08 45.3 0.8 29 27-55 23-51 (201)
104 2gf9_A RAS-related protein RAB 96.7 0.00063 2.2E-08 43.5 1.6 26 31-56 20-45 (189)
105 2fu5_C RAS-related protein RAB 96.6 0.0005 1.7E-08 43.4 1.1 24 31-54 6-29 (183)
106 4bas_A ADP-ribosylation factor 96.6 0.00065 2.2E-08 43.3 1.6 26 30-55 14-39 (199)
107 2il1_A RAB12; G-protein, GDP, 96.6 0.00061 2.1E-08 44.0 1.5 25 31-55 24-48 (192)
108 2ehv_A Hypothetical protein PH 96.6 0.00064 2.2E-08 45.1 1.6 20 35-54 32-51 (251)
109 1zbd_A Rabphilin-3A; G protein 96.6 0.00067 2.3E-08 43.8 1.6 26 31-56 6-31 (203)
110 3llu_A RAS-related GTP-binding 96.6 0.0007 2.4E-08 43.9 1.5 23 31-53 18-40 (196)
111 3n70_A Transport activator; si 96.6 0.0036 1.2E-07 39.5 4.9 48 17-64 8-58 (145)
112 1zp6_A Hypothetical protein AT 96.6 0.00066 2.3E-08 43.7 1.4 26 35-60 11-36 (191)
113 3tr0_A Guanylate kinase, GMP k 96.6 0.00076 2.6E-08 43.8 1.6 23 35-57 9-31 (205)
114 2qu8_A Putative nucleolar GTP- 96.6 0.00085 2.9E-08 44.7 1.8 25 31-55 27-51 (228)
115 4gp7_A Metallophosphoesterase; 96.6 0.00074 2.5E-08 44.0 1.5 18 35-52 11-28 (171)
116 1ye8_A Protein THEP1, hypothet 96.5 0.0008 2.7E-08 44.9 1.6 23 35-57 2-24 (178)
117 2yc2_C IFT27, small RAB-relate 96.5 0.00043 1.5E-08 44.3 0.2 26 31-56 18-43 (208)
118 2fv8_A H6, RHO-related GTP-bin 96.5 0.00077 2.6E-08 44.1 1.4 24 32-55 24-47 (207)
119 1kag_A SKI, shikimate kinase I 96.5 0.00091 3.1E-08 42.4 1.6 24 35-58 6-29 (173)
120 2gco_A H9, RHO-related GTP-bin 96.5 0.00082 2.8E-08 43.7 1.4 24 32-55 24-47 (201)
121 2j0v_A RAC-like GTP-binding pr 96.5 0.00088 3E-08 43.6 1.5 25 31-55 7-31 (212)
122 3lw7_A Adenylate kinase relate 96.5 0.00094 3.2E-08 41.4 1.5 19 35-53 3-21 (179)
123 2p5t_B PEZT; postsegregational 96.5 0.0015 5E-08 45.0 2.6 40 19-58 18-57 (253)
124 2atx_A Small GTP binding prote 96.5 0.00075 2.6E-08 43.2 1.0 24 32-55 17-40 (194)
125 1f6b_A SAR1; gtpases, N-termin 96.4 0.00081 2.8E-08 44.0 1.1 25 31-55 23-47 (198)
126 3th5_A RAS-related C3 botulinu 95.4 0.00048 1.7E-08 44.7 0.0 24 31-54 28-51 (204)
127 1ly1_A Polynucleotide kinase; 96.4 0.0011 3.7E-08 41.9 1.6 21 35-55 4-24 (181)
128 1pui_A ENGB, probable GTP-bind 96.4 0.001 3.5E-08 43.1 1.4 26 31-56 24-49 (210)
129 2gj8_A MNME, tRNA modification 96.4 0.0011 3.6E-08 42.5 1.5 24 32-55 3-26 (172)
130 3fb4_A Adenylate kinase; psych 96.4 0.0012 4E-08 43.6 1.7 22 35-56 2-23 (216)
131 4a74_A DNA repair and recombin 96.4 0.001 3.5E-08 43.5 1.4 21 35-55 27-47 (231)
132 3lxx_A GTPase IMAP family memb 96.4 0.0012 4.1E-08 44.5 1.7 25 31-55 27-51 (239)
133 3c8u_A Fructokinase; YP_612366 96.4 0.0013 4.3E-08 43.8 1.8 26 32-57 21-46 (208)
134 4dkx_A RAS-related protein RAB 96.4 0.0012 4.2E-08 45.1 1.7 24 31-54 11-34 (216)
135 2cbz_A Multidrug resistance-as 96.4 0.0019 6.5E-08 44.8 2.7 38 35-75 33-73 (237)
136 3dl0_A Adenylate kinase; phosp 96.4 0.0013 4.3E-08 43.5 1.7 22 35-56 2-23 (216)
137 4dhe_A Probable GTP-binding pr 96.4 0.00073 2.5E-08 44.2 0.5 25 32-56 28-52 (223)
138 3tlx_A Adenylate kinase 2; str 96.3 0.003 1E-07 43.4 3.6 26 31-56 27-52 (243)
139 2j41_A Guanylate kinase; GMP, 96.3 0.0013 4.4E-08 42.6 1.6 23 35-57 8-30 (207)
140 3cpj_B GTP-binding protein YPT 96.3 0.001 3.5E-08 44.1 1.1 25 31-55 11-35 (223)
141 3sop_A Neuronal-specific septi 96.3 0.0012 4.2E-08 46.7 1.4 25 33-57 2-26 (270)
142 3asz_A Uridine kinase; cytidin 96.3 0.0013 4.4E-08 43.2 1.4 23 34-56 7-29 (211)
143 1knq_A Gluconate kinase; ALFA/ 96.3 0.0015 5.2E-08 41.7 1.6 24 35-58 10-33 (175)
144 3t5d_A Septin-7; GTP-binding p 96.3 0.0012 4.3E-08 45.8 1.3 24 32-55 7-30 (274)
145 3kb2_A SPBC2 prophage-derived 96.2 0.0016 5.4E-08 40.8 1.6 24 35-58 3-26 (173)
146 1kgd_A CASK, peripheral plasma 96.2 0.0016 5.4E-08 42.5 1.6 22 35-56 7-28 (180)
147 2bbw_A Adenylate kinase 4, AK4 96.2 0.0017 5.7E-08 44.2 1.6 21 34-54 28-48 (246)
148 1htw_A HI0065; nucleotide-bind 96.2 0.0017 5.8E-08 42.8 1.6 23 35-57 35-57 (158)
149 1tev_A UMP-CMP kinase; ploop, 96.2 0.0018 6.2E-08 41.2 1.6 23 34-56 4-26 (196)
150 3t61_A Gluconokinase; PSI-biol 96.2 0.0018 6.2E-08 42.4 1.6 25 34-58 19-43 (202)
151 4eun_A Thermoresistant glucoki 96.1 0.0018 6.2E-08 42.7 1.6 24 34-57 30-53 (200)
152 3ec2_A DNA replication protein 96.1 0.002 6.7E-08 41.5 1.7 24 34-57 39-62 (180)
153 3cm0_A Adenylate kinase; ATP-b 96.1 0.0019 6.5E-08 41.4 1.6 22 34-55 5-26 (186)
154 2pze_A Cystic fibrosis transme 96.1 0.003 1E-07 43.5 2.7 22 35-56 36-57 (229)
155 3a00_A Guanylate kinase, GMP k 96.1 0.002 6.7E-08 42.2 1.6 21 36-56 4-24 (186)
156 2bdt_A BH3686; alpha-beta prot 96.1 0.0032 1.1E-07 40.7 2.6 20 36-55 5-24 (189)
157 3lxw_A GTPase IMAP family memb 96.1 0.0022 7.5E-08 44.2 1.8 24 31-54 19-42 (247)
158 1lvg_A Guanylate kinase, GMP k 96.0 0.0022 7.6E-08 42.7 1.6 21 35-55 6-26 (198)
159 1cke_A CK, MSSA, protein (cyti 96.0 0.0022 7.5E-08 42.3 1.6 22 34-55 6-27 (227)
160 2aka_B Dynamin-1; fusion prote 96.0 0.0024 8.3E-08 43.7 1.8 24 31-54 24-47 (299)
161 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0023 7.9E-08 41.6 1.6 21 35-55 25-45 (235)
162 1c9k_A COBU, adenosylcobinamid 96.0 0.0029 1E-07 43.3 2.2 24 36-60 2-25 (180)
163 1qhx_A CPT, protein (chloramph 96.0 0.0024 8E-08 40.7 1.5 26 35-60 5-30 (178)
164 3tif_A Uncharacterized ABC tra 96.0 0.0023 7.9E-08 44.3 1.6 22 35-56 33-54 (235)
165 2g3y_A GTP-binding protein GEM 96.0 0.0025 8.7E-08 43.2 1.7 24 31-54 35-58 (211)
166 2xtp_A GTPase IMAP family memb 96.0 0.0024 8.3E-08 43.4 1.6 25 31-55 20-44 (260)
167 1znw_A Guanylate kinase, GMP k 96.0 0.0025 8.5E-08 42.3 1.6 23 35-57 22-44 (207)
168 2if2_A Dephospho-COA kinase; a 96.0 0.0022 7.6E-08 41.8 1.3 21 35-55 3-23 (204)
169 1nks_A Adenylate kinase; therm 95.9 0.0024 8.1E-08 40.6 1.4 22 35-56 3-24 (194)
170 1mv5_A LMRA, multidrug resista 95.9 0.0027 9.2E-08 44.0 1.6 31 35-65 30-63 (243)
171 2eyu_A Twitching motility prot 95.9 0.0027 9.2E-08 44.7 1.6 24 33-56 25-48 (261)
172 3b85_A Phosphate starvation-in 95.9 0.0025 8.7E-08 43.6 1.4 22 35-56 24-45 (208)
173 3vaa_A Shikimate kinase, SK; s 95.9 0.0029 9.9E-08 41.7 1.6 27 34-60 26-52 (199)
174 1sgw_A Putative ABC transporte 95.9 0.0028 9.6E-08 43.7 1.6 22 35-56 37-58 (214)
175 3lnc_A Guanylate kinase, GMP k 95.9 0.0025 8.6E-08 42.8 1.3 20 35-54 29-48 (231)
176 3k53_A Ferrous iron transport 95.9 0.0028 9.7E-08 43.8 1.6 25 32-56 2-26 (271)
177 2wsm_A Hydrogenase expression/ 95.9 0.0093 3.2E-07 39.0 4.0 25 32-56 29-53 (221)
178 2pcj_A ABC transporter, lipopr 95.8 0.0027 9.1E-08 43.6 1.4 22 35-56 32-53 (224)
179 1lw7_A Transcriptional regulat 95.8 0.0025 8.6E-08 46.1 1.2 25 33-57 170-194 (365)
180 2jaq_A Deoxyguanosine kinase; 95.8 0.0032 1.1E-07 40.4 1.6 22 35-56 2-23 (205)
181 1via_A Shikimate kinase; struc 95.8 0.004 1.4E-07 39.9 2.1 26 35-60 6-31 (175)
182 1ji0_A ABC transporter; ATP bi 95.8 0.0031 1.1E-07 43.7 1.6 23 35-57 34-56 (240)
183 3kta_A Chromosome segregation 95.8 0.0029 9.9E-08 40.6 1.4 22 35-56 28-49 (182)
184 2cvh_A DNA repair and recombin 95.8 0.0032 1.1E-07 40.9 1.6 21 35-55 22-42 (220)
185 3iij_A Coilin-interacting nucl 95.8 0.0033 1.1E-07 40.4 1.6 28 33-60 11-38 (180)
186 2pt5_A Shikimate kinase, SK; a 95.8 0.0033 1.1E-07 39.6 1.6 26 35-60 2-27 (168)
187 1jjv_A Dephospho-COA kinase; P 95.8 0.0034 1.1E-07 41.1 1.6 21 35-55 4-24 (206)
188 2qag_A Septin-2, protein NEDD5 95.8 0.006 2.1E-07 44.6 3.1 25 31-55 35-59 (361)
189 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0033 1.1E-07 43.8 1.6 22 35-56 31-52 (250)
190 1e4v_A Adenylate kinase; trans 95.8 0.0032 1.1E-07 41.8 1.5 22 35-56 2-23 (214)
191 1vpl_A ABC transporter, ATP-bi 95.8 0.0033 1.1E-07 44.3 1.6 23 35-57 43-65 (256)
192 3dpu_A RAB family protein; roc 95.8 0.0067 2.3E-07 46.0 3.4 26 30-55 38-63 (535)
193 3a1s_A Iron(II) transport prot 95.8 0.0028 9.6E-08 44.2 1.2 24 32-55 4-27 (258)
194 2ff7_A Alpha-hemolysin translo 95.8 0.0034 1.2E-07 43.8 1.6 23 35-57 37-59 (247)
195 2ixe_A Antigen peptide transpo 95.7 0.0034 1.2E-07 44.4 1.6 22 35-56 47-68 (271)
196 1kht_A Adenylate kinase; phosp 95.7 0.0036 1.2E-07 39.8 1.6 23 34-56 4-26 (192)
197 2plr_A DTMP kinase, probable t 95.7 0.0035 1.2E-07 40.5 1.5 22 34-55 5-26 (213)
198 2iyv_A Shikimate kinase, SK; t 95.7 0.0049 1.7E-07 39.5 2.2 26 35-60 4-29 (184)
199 1aky_A Adenylate kinase; ATP:A 95.7 0.0041 1.4E-07 41.3 1.9 26 33-58 4-29 (220)
200 2qor_A Guanylate kinase; phosp 95.7 0.0036 1.2E-07 41.3 1.6 23 33-55 12-34 (204)
201 3gfo_A Cobalt import ATP-bindi 95.7 0.0035 1.2E-07 44.8 1.6 34 35-68 36-72 (275)
202 1g6h_A High-affinity branched- 95.7 0.0036 1.2E-07 43.8 1.6 22 35-56 35-56 (257)
203 1qf9_A UMP/CMP kinase, protein 95.7 0.0034 1.2E-07 39.8 1.4 22 35-56 8-29 (194)
204 2rhm_A Putative kinase; P-loop 95.7 0.0035 1.2E-07 40.1 1.4 24 34-57 6-29 (193)
205 2yz2_A Putative ABC transporte 95.7 0.0036 1.2E-07 44.0 1.6 23 35-57 35-57 (266)
206 1z6g_A Guanylate kinase; struc 95.7 0.0038 1.3E-07 42.2 1.6 23 35-57 25-47 (218)
207 2jeo_A Uridine-cytidine kinase 95.7 0.0037 1.3E-07 42.6 1.6 25 33-57 25-49 (245)
208 2onk_A Molybdate/tungstate ABC 95.7 0.0037 1.3E-07 43.6 1.6 22 35-56 26-47 (240)
209 1b0u_A Histidine permease; ABC 95.7 0.0036 1.2E-07 44.0 1.6 22 35-56 34-55 (262)
210 1s96_A Guanylate kinase, GMP k 95.7 0.0037 1.3E-07 43.0 1.6 23 35-57 18-40 (219)
211 2pjz_A Hypothetical protein ST 95.7 0.0037 1.3E-07 44.3 1.6 23 35-57 32-54 (263)
212 1y63_A LMAJ004144AAA protein; 95.7 0.0039 1.3E-07 40.7 1.6 24 33-56 10-33 (184)
213 2pbr_A DTMP kinase, thymidylat 95.7 0.004 1.4E-07 39.6 1.6 21 35-55 2-22 (195)
214 2vli_A Antibiotic resistance p 95.7 0.005 1.7E-07 39.2 2.0 29 34-62 6-34 (183)
215 2kjq_A DNAA-related protein; s 95.6 0.0042 1.4E-07 40.1 1.6 23 35-57 38-60 (149)
216 3uie_A Adenylyl-sulfate kinase 95.6 0.0041 1.4E-07 40.9 1.6 25 33-57 25-49 (200)
217 2qnr_A Septin-2, protein NEDD5 95.6 0.0032 1.1E-07 45.0 1.1 24 32-55 17-40 (301)
218 1ixz_A ATP-dependent metallopr 95.6 0.0058 2E-07 41.3 2.3 26 36-61 52-77 (254)
219 3jvv_A Twitching mobility prot 95.6 0.004 1.4E-07 46.0 1.6 22 35-56 125-146 (356)
220 2olj_A Amino acid ABC transpor 95.6 0.0041 1.4E-07 44.1 1.6 23 35-57 52-74 (263)
221 3tau_A Guanylate kinase, GMP k 95.6 0.0042 1.4E-07 41.4 1.6 22 35-56 10-31 (208)
222 2qi9_C Vitamin B12 import ATP- 95.6 0.0041 1.4E-07 43.7 1.6 23 35-57 28-50 (249)
223 2bbs_A Cystic fibrosis transme 95.6 0.0053 1.8E-07 44.1 2.2 38 35-75 66-106 (290)
224 1e6c_A Shikimate kinase; phosp 95.6 0.0044 1.5E-07 39.1 1.6 26 35-60 4-29 (173)
225 2zu0_C Probable ATP-dependent 95.6 0.0042 1.4E-07 43.8 1.6 22 35-56 48-69 (267)
226 3sr0_A Adenylate kinase; phosp 95.6 0.0046 1.6E-07 42.3 1.7 23 35-57 2-24 (206)
227 1n0w_A DNA repair protein RAD5 95.6 0.0045 1.5E-07 40.8 1.6 21 35-55 26-46 (243)
228 3o47_A ADP-ribosylation factor 95.6 0.0041 1.4E-07 44.7 1.4 24 32-55 164-187 (329)
229 2nq2_C Hypothetical ABC transp 95.6 0.0044 1.5E-07 43.4 1.6 23 35-57 33-55 (253)
230 3trf_A Shikimate kinase, SK; a 95.5 0.0047 1.6E-07 39.6 1.6 25 35-59 7-31 (185)
231 4g1u_C Hemin import ATP-bindin 95.5 0.0045 1.5E-07 43.8 1.6 22 35-56 39-60 (266)
232 2ghi_A Transport protein; mult 95.5 0.0046 1.6E-07 43.4 1.6 23 35-57 48-70 (260)
233 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0044 1.5E-07 45.0 1.6 23 35-57 173-195 (330)
234 3c5h_A Glucocorticoid receptor 95.5 0.0047 1.6E-07 42.5 1.6 27 29-55 15-50 (255)
235 2ihy_A ABC transporter, ATP-bi 95.5 0.0047 1.6E-07 44.1 1.6 22 35-56 49-70 (279)
236 2qt1_A Nicotinamide riboside k 95.5 0.0045 1.5E-07 40.6 1.4 24 33-56 21-44 (207)
237 1rz3_A Hypothetical protein rb 95.5 0.0045 1.5E-07 41.0 1.4 24 32-55 21-44 (201)
238 2bwj_A Adenylate kinase 5; pho 95.5 0.0047 1.6E-07 39.7 1.4 24 34-57 13-36 (199)
239 3umf_A Adenylate kinase; rossm 95.4 0.0044 1.5E-07 43.1 1.3 22 36-57 32-53 (217)
240 3b1v_A Ferrous iron uptake tra 95.4 0.0053 1.8E-07 43.4 1.7 23 33-55 3-25 (272)
241 2cdn_A Adenylate kinase; phosp 95.4 0.0074 2.5E-07 39.4 2.3 29 32-60 19-47 (201)
242 1uj2_A Uridine-cytidine kinase 95.4 0.0059 2E-07 41.7 1.8 27 32-58 21-47 (252)
243 2ze6_A Isopentenyl transferase 95.4 0.0053 1.8E-07 42.5 1.6 21 36-56 4-24 (253)
244 2c95_A Adenylate kinase 1; tra 95.4 0.0051 1.7E-07 39.4 1.4 27 32-58 8-34 (196)
245 2pez_A Bifunctional 3'-phospho 95.4 0.0057 1.9E-07 39.3 1.6 23 34-56 6-28 (179)
246 3r7w_A Gtpase1, GTP-binding pr 95.4 0.0058 2E-07 43.4 1.7 23 33-55 3-25 (307)
247 1nlf_A Regulatory protein REPA 95.4 0.0052 1.8E-07 42.5 1.4 21 35-55 32-52 (279)
248 1zuh_A Shikimate kinase; alpha 95.4 0.0059 2E-07 38.7 1.6 28 34-61 8-35 (168)
249 3i8s_A Ferrous iron transport 95.4 0.0057 1.9E-07 42.8 1.6 24 32-55 2-25 (274)
250 3aez_A Pantothenate kinase; tr 95.3 0.0057 1.9E-07 44.3 1.6 24 34-57 91-114 (312)
251 3be4_A Adenylate kinase; malar 95.3 0.006 2E-07 40.7 1.6 27 34-60 6-32 (217)
252 2qag_C Septin-7; cell cycle, c 95.3 0.0058 2E-07 46.2 1.7 24 33-56 31-54 (418)
253 2z0h_A DTMP kinase, thymidylat 95.3 0.0064 2.2E-07 39.0 1.6 22 35-56 2-23 (197)
254 2gza_A Type IV secretion syste 95.3 0.0054 1.8E-07 44.9 1.4 25 32-56 174-198 (361)
255 1iy2_A ATP-dependent metallopr 95.3 0.0094 3.2E-07 41.1 2.5 26 36-61 76-101 (278)
256 2x2e_A Dynamin-1; nitration, h 95.3 0.0095 3.2E-07 42.9 2.6 31 31-61 29-69 (353)
257 1zd8_A GTP:AMP phosphotransfer 95.3 0.0059 2E-07 40.8 1.4 26 33-58 7-32 (227)
258 2wwf_A Thymidilate kinase, put 95.2 0.0061 2.1E-07 39.6 1.4 23 33-55 10-32 (212)
259 1p9r_A General secretion pathw 95.2 0.0062 2.1E-07 46.0 1.6 35 35-69 169-206 (418)
260 1cr0_A DNA primase/helicase; R 95.2 0.006 2E-07 42.3 1.4 22 35-56 37-58 (296)
261 1ukz_A Uridylate kinase; trans 95.2 0.007 2.4E-07 39.4 1.6 23 34-56 16-38 (203)
262 1sq5_A Pantothenate kinase; P- 95.2 0.0059 2E-07 43.4 1.4 23 34-56 81-103 (308)
263 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.0067 2.3E-07 39.2 1.5 22 36-57 26-47 (149)
264 2yvu_A Probable adenylyl-sulfa 95.2 0.0071 2.4E-07 39.0 1.6 24 33-56 13-36 (186)
265 1uf9_A TT1252 protein; P-loop, 95.2 0.0071 2.4E-07 38.9 1.5 24 33-56 8-31 (203)
266 1nn5_A Similar to deoxythymidy 95.2 0.0076 2.6E-07 39.1 1.7 24 32-55 8-31 (215)
267 2xb4_A Adenylate kinase; ATP-b 95.2 0.0075 2.6E-07 40.6 1.7 22 35-56 2-23 (223)
268 2www_A Methylmalonic aciduria 95.1 0.0083 2.8E-07 43.7 2.0 23 33-55 74-96 (349)
269 2v54_A DTMP kinase, thymidylat 95.1 0.0079 2.7E-07 38.8 1.7 24 33-56 4-27 (204)
270 2qtf_A Protein HFLX, GTP-bindi 95.1 0.02 6.9E-07 42.2 4.0 23 33-55 178-201 (364)
271 2grj_A Dephospho-COA kinase; T 95.1 0.008 2.7E-07 40.6 1.7 25 32-56 11-35 (192)
272 1ltq_A Polynucleotide kinase; 95.1 0.0075 2.6E-07 41.6 1.6 21 35-55 4-24 (301)
273 2ewv_A Twitching motility prot 95.1 0.0075 2.6E-07 44.4 1.6 23 34-56 137-159 (372)
274 2dr3_A UPF0273 protein PH0284; 95.1 0.0072 2.5E-07 39.8 1.4 21 35-55 25-45 (247)
275 1gvn_B Zeta; postsegregational 95.1 0.0085 2.9E-07 42.5 1.8 23 33-55 33-55 (287)
276 2v9p_A Replication protein E1; 95.0 0.0079 2.7E-07 43.9 1.6 23 33-55 126-148 (305)
277 2x8a_A Nuclear valosin-contain 95.0 0.012 4E-07 41.4 2.4 25 36-60 47-71 (274)
278 1zak_A Adenylate kinase; ATP:A 95.0 0.0088 3E-07 39.7 1.7 23 34-56 6-28 (222)
279 2j69_A Bacterial dynamin-like 95.0 0.02 7E-07 45.4 4.0 25 30-54 66-90 (695)
280 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.0085 2.9E-07 41.4 1.6 23 34-56 5-27 (260)
281 2npi_A Protein CLP1; CLP1-PCF1 95.0 0.0076 2.6E-07 46.0 1.4 34 32-65 137-175 (460)
282 1odf_A YGR205W, hypothetical 3 95.0 0.016 5.4E-07 41.5 3.0 39 19-57 16-55 (290)
283 3co5_A Putative two-component 94.9 0.031 1.1E-06 35.1 4.0 32 30-62 24-55 (143)
284 2i3b_A HCR-ntpase, human cance 94.9 0.0098 3.4E-07 40.1 1.7 22 35-56 3-24 (189)
285 2qag_B Septin-6, protein NEDD5 94.9 0.0099 3.4E-07 45.5 1.9 22 35-56 44-65 (427)
286 1ak2_A Adenylate kinase isoenz 94.9 0.011 3.7E-07 39.8 1.9 26 32-57 15-40 (233)
287 1jbk_A CLPB protein; beta barr 94.9 0.01 3.5E-07 36.7 1.6 23 34-56 44-66 (195)
288 2w58_A DNAI, primosome compone 94.9 0.023 7.8E-07 36.9 3.3 24 34-57 55-78 (202)
289 1vht_A Dephospho-COA kinase; s 94.8 0.011 3.8E-07 39.0 1.7 22 34-55 5-26 (218)
290 1lv7_A FTSH; alpha/beta domain 94.8 0.013 4.5E-07 39.6 2.2 28 35-62 47-74 (257)
291 2oap_1 GSPE-2, type II secreti 94.8 0.0092 3.2E-07 46.1 1.5 23 35-57 262-284 (511)
292 3gee_A MNME, tRNA modification 94.8 0.028 9.6E-07 43.0 4.1 28 28-55 228-255 (476)
293 1z47_A CYSA, putative ABC-tran 94.8 0.01 3.5E-07 44.2 1.6 32 35-66 43-77 (355)
294 2vp4_A Deoxynucleoside kinase; 94.8 0.011 3.8E-07 39.9 1.6 24 33-56 20-43 (230)
295 2e87_A Hypothetical protein PH 94.7 0.044 1.5E-06 39.5 4.9 25 31-55 165-189 (357)
296 1g29_1 MALK, maltose transport 94.7 0.01 3.6E-07 44.2 1.6 22 35-56 31-52 (372)
297 4e22_A Cytidylate kinase; P-lo 94.7 0.011 3.7E-07 40.7 1.6 22 33-54 27-48 (252)
298 3iby_A Ferrous iron transport 94.7 0.01 3.5E-07 41.3 1.4 22 34-55 2-23 (256)
299 2it1_A 362AA long hypothetical 94.7 0.011 3.7E-07 44.1 1.6 32 35-66 31-65 (362)
300 1v43_A Sugar-binding transport 94.7 0.011 3.8E-07 44.1 1.6 41 35-75 39-90 (372)
301 2yyz_A Sugar ABC transporter, 94.7 0.011 3.9E-07 43.9 1.6 32 35-66 31-65 (359)
302 1m7g_A Adenylylsulfate kinase; 94.6 0.022 7.5E-07 37.7 2.9 23 33-55 25-47 (211)
303 3p32_A Probable GTPase RV1496/ 94.6 0.034 1.1E-06 40.2 4.0 26 31-56 77-102 (355)
304 3fvq_A Fe(3+) IONS import ATP- 94.6 0.011 3.8E-07 44.2 1.4 34 35-68 32-68 (359)
305 1tf7_A KAIC; homohexamer, hexa 94.5 0.011 3.9E-07 44.8 1.4 20 35-54 41-60 (525)
306 1jwy_B Dynamin A GTPase domain 94.5 0.013 4.6E-07 40.5 1.7 24 31-54 22-45 (315)
307 3ake_A Cytidylate kinase; CMP 94.5 0.013 4.6E-07 37.7 1.6 22 35-56 4-25 (208)
308 3qks_A DNA double-strand break 94.5 0.013 4.3E-07 39.4 1.5 23 36-58 26-48 (203)
309 3bos_A Putative DNA replicatio 94.5 0.036 1.2E-06 35.8 3.6 26 32-57 51-76 (242)
310 1in4_A RUVB, holliday junction 94.5 0.047 1.6E-06 38.9 4.4 24 35-58 53-76 (334)
311 3nh6_A ATP-binding cassette SU 94.5 0.0098 3.3E-07 43.3 0.8 32 35-66 82-116 (306)
312 1gtv_A TMK, thymidylate kinase 94.4 0.0063 2.1E-07 39.6 -0.2 19 36-54 3-21 (214)
313 3rlf_A Maltose/maltodextrin im 94.4 0.014 4.8E-07 44.0 1.6 22 35-56 31-52 (381)
314 3t34_A Dynamin-related protein 94.4 0.014 4.8E-07 41.9 1.5 23 33-55 34-56 (360)
315 3d31_A Sulfate/molybdate ABC t 94.4 0.01 3.6E-07 43.9 0.8 33 35-67 28-63 (348)
316 1u0l_A Probable GTPase ENGC; p 94.3 0.015 5.1E-07 41.3 1.5 21 35-55 171-191 (301)
317 3h4m_A Proteasome-activating n 94.3 0.022 7.4E-07 38.8 2.2 30 33-62 51-80 (285)
318 3sjy_A Translation initiation 94.3 0.012 4E-07 43.3 0.9 26 30-55 5-30 (403)
319 2bjv_A PSP operon transcriptio 94.3 0.044 1.5E-06 37.1 3.8 28 31-58 27-54 (265)
320 3tqc_A Pantothenate kinase; bi 94.2 0.016 5.4E-07 42.5 1.6 23 35-57 94-116 (321)
321 1oxx_K GLCV, glucose, ABC tran 94.2 0.0097 3.3E-07 44.0 0.4 32 35-66 33-67 (353)
322 3pfi_A Holliday junction ATP-d 94.2 0.069 2.4E-06 37.2 4.8 31 33-63 55-85 (338)
323 1ega_A Protein (GTP-binding pr 94.2 0.017 5.9E-07 41.0 1.6 23 33-55 8-30 (301)
324 2p65_A Hypothetical protein PF 94.2 0.037 1.3E-06 34.3 3.0 24 33-56 43-66 (187)
325 3tui_C Methionine import ATP-b 94.2 0.017 5.7E-07 43.4 1.6 22 35-56 56-77 (366)
326 3lvq_E ARF-GAP with SH3 domain 94.2 0.018 6.1E-07 42.9 1.7 25 31-55 320-344 (497)
327 2qz4_A Paraplegin; AAA+, SPG7, 94.2 0.026 8.9E-07 37.6 2.4 28 35-62 41-68 (262)
328 1wf3_A GTP-binding protein; GT 94.1 0.016 5.4E-07 41.4 1.2 24 32-55 6-29 (301)
329 3lda_A DNA repair protein RAD5 94.1 0.02 6.7E-07 43.1 1.8 26 35-60 180-205 (400)
330 1pzn_A RAD51, DNA repair and r 94.0 0.02 6.9E-07 41.7 1.8 24 35-58 133-156 (349)
331 3b9p_A CG5977-PA, isoform A; A 94.0 0.026 8.8E-07 38.7 2.2 30 33-62 54-83 (297)
332 1mky_A Probable GTP-binding pr 94.0 0.02 6.9E-07 42.4 1.8 24 32-55 179-202 (439)
333 2yv5_A YJEQ protein; hydrolase 94.0 0.022 7.6E-07 40.6 1.9 20 35-54 167-186 (302)
334 3gd7_A Fusion complex of cysti 94.0 0.017 5.9E-07 43.4 1.4 22 35-56 49-70 (390)
335 3geh_A MNME, tRNA modification 94.0 0.021 7.3E-07 43.5 1.9 27 29-55 220-246 (462)
336 1qhl_A Protein (cell division 93.9 0.0071 2.4E-07 42.3 -0.8 22 36-57 30-51 (227)
337 1sxj_E Activator 1 40 kDa subu 93.9 0.028 9.6E-07 39.3 2.3 20 36-55 39-58 (354)
338 1svm_A Large T antigen; AAA+ f 93.9 0.021 7E-07 42.7 1.6 27 34-60 170-196 (377)
339 1yqt_A RNAse L inhibitor; ATP- 93.9 0.02 6.9E-07 44.2 1.6 22 35-56 49-70 (538)
340 2f1r_A Molybdopterin-guanine d 93.9 0.012 3.9E-07 39.3 0.2 22 35-56 4-25 (171)
341 2f6r_A COA synthase, bifunctio 93.8 0.021 7.2E-07 40.1 1.5 22 33-54 75-96 (281)
342 2qm8_A GTPase/ATPase; G protei 93.8 0.022 7.5E-07 41.3 1.6 24 32-55 54-77 (337)
343 3p26_A Elongation factor 1 alp 93.8 0.028 9.4E-07 42.4 2.1 27 30-56 30-56 (483)
344 2chg_A Replication factor C sm 93.8 0.071 2.4E-06 33.6 3.8 20 36-55 41-60 (226)
345 1rj9_A FTSY, signal recognitio 93.8 0.023 7.8E-07 41.0 1.6 22 35-56 104-125 (304)
346 2ius_A DNA translocase FTSK; n 93.8 0.021 7.2E-07 44.5 1.5 22 33-54 167-188 (512)
347 1yrb_A ATP(GTP)binding protein 93.7 0.047 1.6E-06 36.5 3.1 35 31-65 12-49 (262)
348 3ney_A 55 kDa erythrocyte memb 93.7 0.024 8.2E-07 39.0 1.6 21 35-55 21-41 (197)
349 1tq4_A IIGP1, interferon-induc 93.7 0.057 1.9E-06 40.9 3.8 24 32-55 68-91 (413)
350 1bif_A 6-phosphofructo-2-kinas 93.7 0.025 8.7E-07 42.3 1.8 25 32-56 38-62 (469)
351 2yl4_A ATP-binding cassette SU 93.7 0.025 8.5E-07 43.7 1.8 22 35-56 372-393 (595)
352 1njg_A DNA polymerase III subu 93.6 0.083 2.8E-06 33.4 3.9 21 35-55 47-67 (250)
353 3nwj_A ATSK2; P loop, shikimat 93.6 0.026 8.8E-07 39.7 1.6 26 33-58 48-73 (250)
354 1hqc_A RUVB; extended AAA-ATPa 93.6 0.11 3.9E-06 35.6 4.9 29 34-62 39-67 (324)
355 3zvl_A Bifunctional polynucleo 93.6 0.025 8.6E-07 42.0 1.6 21 35-55 260-280 (416)
356 3b60_A Lipid A export ATP-bind 93.5 0.024 8.2E-07 43.7 1.4 22 35-56 371-392 (582)
357 3b9q_A Chloroplast SRP recepto 93.4 0.029 9.8E-07 40.4 1.6 31 35-65 102-135 (302)
358 1q3t_A Cytidylate kinase; nucl 93.4 0.034 1.1E-06 37.5 1.9 24 32-55 15-38 (236)
359 3b5x_A Lipid A export ATP-bind 93.3 0.028 9.6E-07 43.3 1.6 31 35-65 371-404 (582)
360 3bk7_A ABC transporter ATP-bin 93.3 0.028 9.6E-07 44.2 1.6 22 35-56 119-140 (607)
361 2dby_A GTP-binding protein; GD 93.3 0.031 1.1E-06 41.5 1.7 22 34-55 2-23 (368)
362 2r62_A Cell division protease 93.2 0.028 9.5E-07 38.0 1.2 28 35-62 46-73 (268)
363 1np6_A Molybdopterin-guanine d 93.2 0.033 1.1E-06 37.2 1.6 21 35-55 8-28 (174)
364 2qmh_A HPR kinase/phosphorylas 93.2 0.09 3.1E-06 37.0 3.9 36 33-70 34-69 (205)
365 3euj_A Chromosome partition pr 93.2 0.031 1.1E-06 43.3 1.6 22 35-56 31-52 (483)
366 4eaq_A DTMP kinase, thymidylat 93.2 0.033 1.1E-06 38.1 1.6 25 32-56 25-49 (229)
367 1nij_A Hypothetical protein YJ 93.1 0.033 1.1E-06 39.8 1.6 21 36-56 7-27 (318)
368 3r20_A Cytidylate kinase; stru 93.1 0.036 1.2E-06 38.9 1.7 22 33-54 9-30 (233)
369 4ag6_A VIRB4 ATPase, type IV s 93.1 0.034 1.2E-06 40.2 1.6 23 33-55 35-57 (392)
370 2rcn_A Probable GTPase ENGC; Y 93.1 0.034 1.2E-06 41.5 1.6 21 35-55 217-237 (358)
371 1tf7_A KAIC; homohexamer, hexa 93.0 0.031 1.1E-06 42.4 1.4 24 34-57 282-305 (525)
372 1ex7_A Guanylate kinase; subst 93.0 0.036 1.2E-06 37.5 1.6 19 36-54 4-22 (186)
373 1l8q_A Chromosomal replication 93.0 0.037 1.3E-06 38.7 1.6 24 34-57 38-61 (324)
374 3qf4_B Uncharacterized ABC tra 93.0 0.038 1.3E-06 42.8 1.8 31 35-65 383-416 (598)
375 1jny_A EF-1-alpha, elongation 93.0 0.034 1.2E-06 41.3 1.5 25 31-55 4-28 (435)
376 1d2n_A N-ethylmaleimide-sensit 93.0 0.05 1.7E-06 37.1 2.2 30 33-62 64-93 (272)
377 1a7j_A Phosphoribulokinase; tr 92.9 0.037 1.3E-06 39.3 1.6 22 34-55 6-27 (290)
378 2c78_A Elongation factor TU-A; 92.9 0.039 1.3E-06 40.4 1.7 26 31-56 9-34 (405)
379 1d2e_A Elongation factor TU (E 92.9 0.04 1.4E-06 40.4 1.7 25 32-56 2-26 (397)
380 1xzp_A Probable tRNA modificat 92.8 0.038 1.3E-06 42.4 1.6 25 31-55 241-265 (482)
381 3ozx_A RNAse L inhibitor; ATP 92.8 0.038 1.3E-06 42.9 1.6 21 36-56 28-48 (538)
382 3cf0_A Transitional endoplasmi 92.8 0.066 2.3E-06 37.5 2.7 28 35-62 51-78 (301)
383 4dcu_A GTP-binding protein ENG 92.8 0.039 1.3E-06 41.1 1.6 23 33-55 23-45 (456)
384 1p5z_B DCK, deoxycytidine kina 92.8 0.046 1.6E-06 37.3 1.9 25 32-56 23-47 (263)
385 3ozx_A RNAse L inhibitor; ATP 92.8 0.038 1.3E-06 42.8 1.6 22 35-56 296-317 (538)
386 3szr_A Interferon-induced GTP- 92.7 0.038 1.3E-06 43.2 1.5 22 35-56 47-68 (608)
387 3iev_A GTP-binding protein ERA 92.7 0.042 1.4E-06 39.0 1.6 24 32-55 9-32 (308)
388 3qf7_A RAD50; ABC-ATPase, ATPa 92.7 0.041 1.4E-06 40.2 1.6 21 36-56 26-46 (365)
389 4a82_A Cystic fibrosis transme 92.7 0.039 1.3E-06 42.5 1.5 22 35-56 369-390 (578)
390 3hr8_A Protein RECA; alpha and 92.6 0.04 1.4E-06 41.0 1.4 21 36-56 64-84 (356)
391 3cnl_A YLQF, putative uncharac 92.5 0.044 1.5E-06 38.5 1.5 21 34-54 100-120 (262)
392 1kk1_A EIF2gamma; initiation o 92.4 0.034 1.2E-06 40.8 0.9 24 31-54 8-31 (410)
393 1yqt_A RNAse L inhibitor; ATP- 92.4 0.045 1.5E-06 42.2 1.6 22 35-56 314-335 (538)
394 1jal_A YCHF protein; nucleotid 92.4 0.048 1.6E-06 40.7 1.7 22 34-55 3-24 (363)
395 3bk7_A ABC transporter ATP-bin 92.4 0.045 1.5E-06 43.1 1.6 22 35-56 384-405 (607)
396 3syl_A Protein CBBX; photosynt 92.4 0.044 1.5E-06 37.5 1.4 23 35-57 69-91 (309)
397 2zts_A Putative uncharacterize 92.3 0.052 1.8E-06 35.6 1.6 20 36-55 33-52 (251)
398 1lnz_A SPO0B-associated GTP-bi 92.3 0.044 1.5E-06 40.2 1.4 21 35-55 160-180 (342)
399 3eie_A Vacuolar protein sortin 92.3 0.061 2.1E-06 37.9 2.1 28 35-62 53-80 (322)
400 2og2_A Putative signal recogni 92.3 0.049 1.7E-06 40.5 1.6 22 35-56 159-180 (359)
401 2yhs_A FTSY, cell division pro 92.3 0.048 1.6E-06 42.8 1.6 30 35-64 295-327 (503)
402 3ec1_A YQEH GTPase; atnos1, at 92.3 0.11 3.6E-06 38.1 3.4 25 32-56 161-185 (369)
403 2dpy_A FLII, flagellum-specifi 92.3 0.045 1.5E-06 41.4 1.4 26 32-57 156-181 (438)
404 1um8_A ATP-dependent CLP prote 92.3 0.2 6.8E-06 35.8 4.7 31 33-63 72-102 (376)
405 1ofh_A ATP-dependent HSL prote 92.3 0.076 2.6E-06 36.0 2.4 30 33-62 50-79 (310)
406 4aby_A DNA repair protein RECN 92.2 0.022 7.5E-07 41.1 -0.4 24 35-58 62-85 (415)
407 3tr5_A RF-3, peptide chain rel 92.2 0.13 4.3E-06 39.8 3.9 23 32-54 12-34 (528)
408 1wxq_A GTP-binding protein; st 92.2 0.048 1.6E-06 40.7 1.4 22 34-55 1-22 (397)
409 3hws_A ATP-dependent CLP prote 92.2 0.079 2.7E-06 37.8 2.5 30 34-63 52-81 (363)
410 1ni3_A YCHF GTPase, YCHF GTP-b 92.1 0.053 1.8E-06 40.8 1.6 25 31-55 18-42 (392)
411 1fnn_A CDC6P, cell division co 92.1 0.055 1.9E-06 37.7 1.6 23 35-57 46-68 (389)
412 3gmt_A Adenylate kinase; ssgci 92.1 0.056 1.9E-06 38.1 1.7 27 32-58 7-33 (230)
413 3e70_C DPA, signal recognition 92.1 0.054 1.8E-06 39.5 1.6 23 34-56 130-152 (328)
414 1puj_A YLQF, conserved hypothe 92.1 0.13 4.4E-06 36.4 3.5 24 31-54 118-141 (282)
415 1s0u_A EIF-2-gamma, translatio 92.1 0.059 2E-06 39.5 1.8 24 31-54 6-29 (408)
416 3qf4_A ABC transporter, ATP-bi 92.1 0.052 1.8E-06 42.0 1.6 32 35-66 371-405 (587)
417 1ojl_A Transcriptional regulat 92.1 0.14 4.6E-06 36.3 3.6 28 30-57 22-49 (304)
418 2qby_A CDC6 homolog 1, cell di 92.1 0.051 1.8E-06 37.5 1.4 25 33-57 45-69 (386)
419 1udx_A The GTP-binding protein 92.0 0.042 1.5E-06 41.5 1.0 22 35-56 159-180 (416)
420 3cr8_A Sulfate adenylyltranfer 92.0 0.068 2.3E-06 41.8 2.2 27 31-57 367-393 (552)
421 1ewq_A DNA mismatch repair pro 92.0 0.054 1.9E-06 43.9 1.7 23 35-57 578-600 (765)
422 1w1w_A Structural maintenance 92.0 0.056 1.9E-06 39.8 1.6 22 36-57 29-50 (430)
423 2obl_A ESCN; ATPase, hydrolase 92.0 0.051 1.8E-06 39.9 1.4 26 32-57 70-95 (347)
424 3j16_B RLI1P; ribosome recycli 92.0 0.054 1.8E-06 42.8 1.6 21 35-55 105-125 (608)
425 1e69_A Chromosome segregation 92.0 0.062 2.1E-06 38.1 1.8 23 35-57 26-48 (322)
426 1t9h_A YLOQ, probable GTPase E 92.0 0.022 7.5E-07 41.5 -0.7 22 34-55 174-195 (307)
427 1zun_B Sulfate adenylate trans 91.9 0.049 1.7E-06 40.4 1.2 25 31-55 22-46 (434)
428 1wb9_A DNA mismatch repair pro 91.9 0.058 2E-06 43.9 1.7 23 35-57 609-631 (800)
429 4fcw_A Chaperone protein CLPB; 91.8 0.063 2.2E-06 36.7 1.6 23 35-57 49-71 (311)
430 3qq5_A Small GTP-binding prote 91.8 0.057 2E-06 40.8 1.5 25 31-55 32-56 (423)
431 2qpt_A EH domain-containing pr 91.7 0.059 2E-06 41.8 1.5 24 32-55 64-87 (550)
432 2zr9_A Protein RECA, recombina 91.7 0.058 2E-06 39.5 1.4 22 36-57 64-85 (349)
433 2ohf_A Protein OLA1, GTP-bindi 91.7 0.069 2.4E-06 40.4 1.9 25 31-55 20-44 (396)
434 2v1u_A Cell division control p 91.7 0.068 2.3E-06 37.1 1.7 25 33-57 44-68 (387)
435 1sxj_C Activator 1 40 kDa subu 91.7 0.17 5.7E-06 35.7 3.7 21 36-56 49-69 (340)
436 2hjg_A GTP-binding protein ENG 91.7 0.07 2.4E-06 39.5 1.8 24 32-55 174-197 (436)
437 3j16_B RLI1P; ribosome recycli 91.7 0.063 2.1E-06 42.4 1.6 21 36-56 381-401 (608)
438 3h2y_A GTPase family protein; 91.7 0.12 4.1E-06 37.9 3.0 25 32-56 159-183 (368)
439 3tqf_A HPR(Ser) kinase; transf 91.6 0.16 5.6E-06 35.2 3.5 34 35-70 18-51 (181)
440 2h92_A Cytidylate kinase; ross 91.5 0.072 2.4E-06 34.9 1.5 23 34-56 4-26 (219)
441 1xjc_A MOBB protein homolog; s 91.5 0.073 2.5E-06 35.8 1.6 21 35-55 6-26 (169)
442 2ocp_A DGK, deoxyguanosine kin 91.5 0.066 2.3E-06 36.0 1.4 22 35-56 4-25 (241)
443 2hjg_A GTP-binding protein ENG 91.4 0.068 2.3E-06 39.5 1.5 22 34-55 4-25 (436)
444 2z43_A DNA repair and recombin 91.4 0.079 2.7E-06 37.7 1.8 26 35-60 109-134 (324)
445 2dhr_A FTSH; AAA+ protein, hex 91.4 0.11 3.6E-06 40.2 2.6 27 36-62 67-93 (499)
446 1v5w_A DMC1, meiotic recombina 91.4 0.086 2.9E-06 38.0 2.0 25 35-59 124-148 (343)
447 3izq_1 HBS1P, elongation facto 91.3 0.18 6E-06 39.6 3.8 24 31-54 165-188 (611)
448 2p67_A LAO/AO transport system 91.3 0.17 5.7E-06 36.4 3.4 25 31-55 54-78 (341)
449 2px0_A Flagellar biosynthesis 91.2 0.071 2.4E-06 38.1 1.4 22 35-56 107-128 (296)
450 2qgz_A Helicase loader, putati 91.2 0.078 2.7E-06 37.8 1.6 25 33-57 152-176 (308)
451 2iw3_A Elongation factor 3A; a 91.2 0.073 2.5E-06 44.7 1.6 20 35-54 463-482 (986)
452 3t15_A Ribulose bisphosphate c 91.2 0.087 3E-06 37.0 1.8 27 36-62 39-65 (293)
453 2i1q_A DNA repair and recombin 91.2 0.073 2.5E-06 37.4 1.4 22 35-56 100-121 (322)
454 3ux8_A Excinuclease ABC, A sub 91.1 0.073 2.5E-06 41.6 1.5 19 35-53 350-368 (670)
455 3vfd_A Spastin; ATPase, microt 91.1 0.13 4.5E-06 37.1 2.7 30 34-63 149-178 (389)
456 3qkt_A DNA double-strand break 91.0 0.076 2.6E-06 38.0 1.4 22 37-58 27-48 (339)
457 3m6a_A ATP-dependent protease 91.0 0.098 3.3E-06 40.2 2.1 27 35-61 110-136 (543)
458 2dy1_A Elongation factor G; tr 90.9 0.14 4.9E-06 40.3 3.0 24 31-54 7-30 (665)
459 2gks_A Bifunctional SAT/APS ki 90.8 0.17 5.7E-06 39.3 3.2 38 18-55 356-394 (546)
460 1ypw_A Transitional endoplasmi 90.7 0.13 4.3E-06 41.5 2.5 27 35-61 240-266 (806)
461 2iut_A DNA translocase FTSK; n 90.7 0.085 2.9E-06 41.9 1.5 23 33-55 214-236 (574)
462 1sxj_D Activator 1 41 kDa subu 90.6 0.098 3.4E-06 36.2 1.6 22 36-57 61-82 (353)
463 2h5e_A Peptide chain release f 90.6 0.11 3.7E-06 40.1 2.0 25 31-55 11-35 (529)
464 2o8b_B DNA mismatch repair pro 90.6 0.088 3E-06 43.9 1.5 23 35-57 791-813 (1022)
465 1vma_A Cell division protein F 90.6 0.097 3.3E-06 37.8 1.6 22 35-56 106-127 (306)
466 3d3q_A TRNA delta(2)-isopenten 90.5 0.098 3.4E-06 38.9 1.6 22 35-56 9-30 (340)
467 3r7w_B Gtpase2, GTP-binding pr 90.5 0.11 3.7E-06 38.6 1.9 18 35-52 1-18 (331)
468 1g8p_A Magnesium-chelatase 38 90.4 0.091 3.1E-06 36.4 1.3 24 35-58 47-70 (350)
469 3thx_A DNA mismatch repair pro 90.4 0.099 3.4E-06 43.4 1.7 21 35-55 664-684 (934)
470 2qby_B CDC6 homolog 3, cell di 90.3 0.28 9.4E-06 34.3 3.7 22 35-56 47-68 (384)
471 2ce7_A Cell division protein F 90.3 0.13 4.5E-06 39.5 2.2 27 36-62 52-78 (476)
472 1m8p_A Sulfate adenylyltransfe 90.3 0.12 4.2E-06 40.4 2.0 26 32-57 395-420 (573)
473 2axn_A 6-phosphofructo-2-kinas 90.3 0.1 3.5E-06 40.1 1.6 21 35-55 37-57 (520)
474 1g8f_A Sulfate adenylyltransfe 90.3 0.2 7E-06 38.9 3.3 40 18-57 379-419 (511)
475 2z4s_A Chromosomal replication 90.3 0.11 3.6E-06 38.8 1.6 23 35-57 132-154 (440)
476 3upu_A ATP-dependent DNA helic 90.2 0.11 3.6E-06 38.7 1.6 21 35-55 47-67 (459)
477 1ko7_A HPR kinase/phosphatase; 90.2 0.22 7.7E-06 36.6 3.3 36 34-71 145-180 (314)
478 2ga8_A Hypothetical 39.9 kDa p 90.2 0.11 3.7E-06 39.2 1.6 28 34-61 25-52 (359)
479 2r6a_A DNAB helicase, replicat 89.9 0.12 4E-06 38.6 1.6 22 35-56 205-226 (454)
480 1xwi_A SKD1 protein; VPS4B, AA 89.9 0.16 5.4E-06 36.2 2.2 27 35-61 47-74 (322)
481 3thx_B DNA mismatch repair pro 89.8 0.087 3E-06 43.7 0.9 22 35-56 675-696 (918)
482 3d8b_A Fidgetin-like protein 1 89.8 0.17 6E-06 36.3 2.4 30 33-62 117-146 (357)
483 1ls1_A Signal recognition part 89.7 0.12 4.2E-06 36.7 1.6 23 35-57 100-122 (295)
484 2qp9_X Vacuolar protein sortin 89.7 0.17 5.7E-06 36.5 2.3 28 35-62 86-113 (355)
485 1u94_A RECA protein, recombina 89.7 0.13 4.3E-06 37.9 1.6 21 36-56 66-86 (356)
486 2iw3_A Elongation factor 3A; a 89.6 0.094 3.2E-06 44.0 1.0 22 35-56 701-722 (986)
487 2r44_A Uncharacterized protein 89.6 0.23 7.8E-06 34.6 2.8 28 34-61 47-74 (331)
488 3uk6_A RUVB-like 2; hexameric 89.6 0.12 4.1E-06 36.2 1.4 24 35-58 72-95 (368)
489 1f60_A Elongation factor EEF1A 89.6 0.12 3.9E-06 38.9 1.4 24 32-55 6-29 (458)
490 1wb1_A Translation elongation 89.4 0.1 3.5E-06 39.6 1.0 26 32-57 18-43 (482)
491 1zu4_A FTSY; GTPase, signal re 89.4 0.14 4.6E-06 37.1 1.6 22 35-56 107-128 (320)
492 3crm_A TRNA delta(2)-isopenten 89.4 0.14 4.6E-06 37.8 1.6 22 35-56 7-28 (323)
493 2o5v_A DNA replication and rep 89.4 0.14 4.7E-06 37.9 1.6 21 35-55 28-48 (359)
494 3bh0_A DNAB-like replicative h 89.3 0.14 4.8E-06 36.4 1.6 22 35-56 70-91 (315)
495 1knx_A Probable HPR(Ser) kinas 89.2 0.25 8.7E-06 36.3 2.9 37 33-71 147-183 (312)
496 3j2k_7 ERF3, eukaryotic polype 89.1 0.15 5E-06 38.2 1.6 23 31-53 15-37 (439)
497 4dcu_A GTP-binding protein ENG 89.1 0.16 5.5E-06 37.7 1.8 24 31-54 193-216 (456)
498 1mky_A Probable GTP-binding pr 89.1 0.15 5.1E-06 37.7 1.6 20 35-54 3-22 (439)
499 3izy_P Translation initiation 89.0 0.14 4.8E-06 40.0 1.5 24 32-55 3-26 (537)
500 1tue_A Replication protein E1; 88.9 0.13 4.3E-06 36.4 1.1 22 35-56 60-81 (212)
No 1
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.77 E-value=5e-20 Score=140.21 Aligned_cols=60 Identities=30% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCccCCH-------HHHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 1 MGCAMSA-------EERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 1 MGcc~S~-------ee~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
||||.|. +++++.++|++||++|+++++...+++|||||||||||||||++||.|+-..+
T Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~g 67 (402)
T 1azs_C 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNG 67 (402)
T ss_dssp -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCC
Confidence 8999876 35678889999999999999999999999999999999999999999997654
No 2
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=1.6e-19 Score=134.50 Aligned_cols=59 Identities=42% Similarity=0.617 Sum_probs=27.3
Q ss_pred CccCCHHHHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 2 GCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 2 Gcc~S~ee~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
|||.|.+++++.++|++||++|+++++..++++||||||+||||||||++||.|+-..+
T Consensus 1 g~~~~~~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g 59 (353)
T 1cip_A 1 GCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAG 59 (353)
T ss_dssp ------------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCC
Confidence 78999888899999999999999999999999999999999999999999999987654
No 3
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.68 E-value=4.6e-18 Score=126.92 Aligned_cols=59 Identities=41% Similarity=0.601 Sum_probs=26.9
Q ss_pred CCccCCHHHHHHHHhhHHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhccc
Q psy6625 1 MGCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 1 MGcc~S~ee~ea~~~Sk~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
||||.|.+++++.++|++||++|+++++..++.+||||||+||||||||+++|.++-..
T Consensus 1 mgc~~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~ 59 (362)
T 1zcb_A 1 MGCTLSAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQ 59 (362)
T ss_dssp ------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 89999988889999999999999999999999999999999999999999999887653
No 4
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.17 E-value=5.7e-12 Score=93.50 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=27.5
Q ss_pred HhhhCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 28 IQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 28 k~~~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+..++++|||||||||||||||++||.|+-..+
T Consensus 2 ~~~~~~~klLlLG~geSGKSTi~KQmkiih~~g 34 (327)
T 3ohm_A 2 ADARRELKLLLLGTGESGKSTFIKQMRIIHGSG 34 (327)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred chhcccceEEEEcCCCccHHHHHHHHHHHHcCC
Confidence 346789999999999999999999999987643
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.11 E-value=1.7e-11 Score=91.57 Aligned_cols=30 Identities=27% Similarity=0.160 Sum_probs=27.0
Q ss_pred hCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
++++||||||+||||||||++||.|+-..+
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~~g 32 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFGGG 32 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTSCC
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 578999999999999999999999997754
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.70 E-value=3.1e-09 Score=79.08 Aligned_cols=30 Identities=23% Similarity=0.007 Sum_probs=26.5
Q ss_pred hCccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.+++||||||+||||||||+++|.++-..+
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~~~~~~g 36 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIKLLFQTG 36 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred CCceeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 468999999999999999999999886543
No 7
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.31 E-value=8.1e-05 Score=46.00 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+.||||||+.+++-
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHc
Confidence 3578999999999999999999874
No 8
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.24 E-value=9.8e-05 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|.+++|||||+.+++-
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999999863
No 9
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.23 E-value=9.6e-05 Score=45.93 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.1
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+|++++|...+|||||+.+++.
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999999874
No 10
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00012 Score=45.16 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.8
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++-
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999999875
No 11
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.18 E-value=0.00013 Score=44.70 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++-
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999999874
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.18 E-value=0.00014 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++-
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999999874
No 13
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.17 E-value=0.00014 Score=45.50 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...||||||+.+++-
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999998874
No 14
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.16 E-value=0.00015 Score=44.50 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++.
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999998874
No 15
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.15 E-value=9.6e-05 Score=45.75 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.7
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+|++++|...+|||||+.+++--
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999998743
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.13 E-value=0.00012 Score=45.38 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 3568999999999999999998874
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.13 E-value=0.00015 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
.+|++++|..++|||||+.+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 5899999999999999999986
No 18
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.12 E-value=9.1e-05 Score=47.54 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=24.5
Q ss_pred HhHHhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 25 EDGIQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 25 kekk~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+...+.+|++++|...+|||||+.+++-
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 3344456689999999999999999999875
No 19
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.12 E-value=0.00016 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.8
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|.+++||||+++.++-
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999999885
No 20
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.12 E-value=0.00011 Score=48.10 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=23.0
Q ss_pred hHHhhhCccceeeccCCCccchhhhhhhh
Q psy6625 26 DGIQAAKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 26 ekk~~~~evKLLLLGaGESGKST~~~~~~ 54 (76)
+.+.+.+.+|++++|...+|||||+.+++
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHH
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHH
Confidence 34445678999999999999999999986
No 21
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.11 E-value=0.00014 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.9
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999999874
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.10 E-value=0.00014 Score=45.33 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999999874
No 23
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.09 E-value=0.00018 Score=45.26 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.9
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...+|++++|...+|||||+.+++--
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999998754
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.08 E-value=0.00015 Score=44.70 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++++|...+|||||+.+++-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999998864
No 25
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.07 E-value=0.0002 Score=44.93 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3579999999999999999999874
No 26
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.07 E-value=0.00049 Score=47.64 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 18 QIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 18 ~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+...+.+..+.....+|++++|...+|||||+.+++-
T Consensus 24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34444444444445689999999999999999999874
No 27
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.05 E-value=0.00019 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|...+|||||+.+++-
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHHh
Confidence 358999999999999999999873
No 28
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.00014 Score=45.37 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.6
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|++++|...+|||||+.+++-
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999999863
No 29
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.05 E-value=0.00087 Score=46.18 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 19 IEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 19 IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+++....-.......+|++++|...+|||||+.+++-
T Consensus 141 ~~~~~~~~~~~~~~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HhhhcccchhcccceeEEEEECCCCCChHHHHHHHHh
Confidence 3333333344566789999999999999999988764
No 30
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.05 E-value=0.00019 Score=44.78 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.7
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+|++++|...+|||||+.+++--
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999998743
No 31
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.04 E-value=0.00017 Score=46.04 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|.+.+|||||+.+++-
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 568999999999999999999874
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.04 E-value=0.00022 Score=44.65 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999999999874
No 33
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.03 E-value=0.00023 Score=45.02 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=23.1
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|++++|...+|||||+.+++-
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999999873
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.01 E-value=0.00019 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3568999999999999999999874
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.01 E-value=0.00018 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|..++|||||+.+++-
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999999873
No 36
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.00 E-value=0.00047 Score=44.83 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=22.3
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+|+.++|..++||||+++.++-.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3589999999999999999998864
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00017 Score=46.61 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.8
Q ss_pred hhhCccceeeccCCCccchhhhhhhhh
Q psy6625 29 QAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 29 ~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+.+|++++|...+|||||+.+++-
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhc
Confidence 345689999999999999999999874
No 38
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.99 E-value=0.00028 Score=44.35 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=21.9
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4579999999999999999998874
No 39
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.99 E-value=0.00026 Score=43.96 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.3
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
.+|++++|...+||||++.+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4799999999999999999986
No 40
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.98 E-value=0.00026 Score=44.04 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|...+|||||+.+++-
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 468999999999999999999864
No 41
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.98 E-value=0.00064 Score=46.95 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=25.6
Q ss_pred HHhHHhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 24 KEDGIQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 24 ~kekk~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
++......+.+|++++|...+|||||+.+++-
T Consensus 27 ~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 27 GKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33333344789999999999999999999874
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.98 E-value=0.00019 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.8
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++-
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 568999999999999999999873
No 43
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.98 E-value=0.00025 Score=45.52 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...||||||+.+++-
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999863
No 44
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.98 E-value=0.00024 Score=46.20 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=22.4
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+|++++|..++|||||+.+++-
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHh
Confidence 35689999999999999999999875
No 45
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.98 E-value=0.00046 Score=44.96 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=22.2
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+|+.|+|..+|||||+++.++-.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4689999999999999999998753
No 46
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.97 E-value=0.00029 Score=44.10 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+..|++++|...+|||||+.+++-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999864
No 47
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.96 E-value=0.00022 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++-
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999999988863
No 48
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.96 E-value=0.00021 Score=44.99 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=22.9
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+|++++|...+|||||+.+++-
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999999874
No 49
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.96 E-value=0.00022 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=22.2
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+++|++++|.+.+|||||+.+++-
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999999875
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.94 E-value=0.0002 Score=46.88 Aligned_cols=26 Identities=23% Similarity=0.065 Sum_probs=23.2
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+.+|++++|...+|||||+.+++-
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhc
Confidence 45679999999999999999999874
No 51
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.93 E-value=0.0003 Score=45.28 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 4578999999999999999999864
No 52
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.93 E-value=0.00027 Score=46.75 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=22.9
Q ss_pred hhhCccceeeccCCCccchhhhhhhhh
Q psy6625 29 QAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 29 ~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+.+|++++|...+|||||+.+++-
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHc
Confidence 345689999999999999999999874
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.93 E-value=0.00021 Score=45.21 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 4568999999999999999999874
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.93 E-value=0.00033 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999999874
No 55
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00032 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=22.0
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..|+.++|..++||||++.+++-
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999985
No 56
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.00027 Score=45.09 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=22.6
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4578999999999999999999875
No 57
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00034 Score=44.68 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.9
Q ss_pred hCccceeeccCCCccchhhhhhhhhhc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
...+|++++|...||||||+.+++--.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998654
No 58
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.91 E-value=0.00032 Score=45.48 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.0
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+++|++++|.+.+|||||+..++.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999988764
No 59
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.91 E-value=0.0003 Score=46.10 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.6
Q ss_pred hhCccceeeccCCCccchhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....+|++++|.+.+|||||+.+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHH
Confidence 4467999999999999999999986
No 60
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.91 E-value=0.00026 Score=44.29 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc
Confidence 3568999999999999999999874
No 61
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.91 E-value=0.00032 Score=43.09 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=20.1
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.|++++|..++||||++.+++-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999874
No 62
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.90 E-value=0.00034 Score=43.22 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|...+|||||+.+++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999874
No 63
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.00015 Score=46.69 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=24.0
Q ss_pred hhhCccceeeccCCCccchhhhhhhhhh
Q psy6625 29 QAAKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 29 ~~~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.....+|++++|...+|||||+.+++--
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3456899999999999999999998743
No 64
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.88 E-value=0.00025 Score=44.71 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+.+|++++|...+||||++.+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999999987
No 65
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.88 E-value=0.00035 Score=45.04 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.4
Q ss_pred hhhCccceeeccCCCccchhhhhhhhh
Q psy6625 29 QAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 29 ~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+.+|++++|...+|||||+.+++-
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999999998873
No 66
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.88 E-value=0.00036 Score=44.67 Aligned_cols=25 Identities=12% Similarity=0.424 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4679999999999999999999873
No 67
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00027 Score=44.30 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999999999874
No 68
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00035 Score=44.69 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+.+|++++|...+|||||+.+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999999987
No 69
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.87 E-value=0.00033 Score=44.80 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|.+.+|||||+.+++-
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999875
No 70
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.87 E-value=0.00035 Score=45.55 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=20.8
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+.+||||++.+++-
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999999874
No 71
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.87 E-value=0.00037 Score=45.04 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHh
Confidence 4679999999999999999999874
No 72
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.86 E-value=0.00032 Score=44.34 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|++++|...+|||||+.+++-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 73
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.86 E-value=0.0004 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4579999999999999999999874
No 74
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.84 E-value=0.00031 Score=45.17 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.7
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+|++++|...+|||||+.+++-
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhc
Confidence 34679999999999999999999875
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.84 E-value=0.00032 Score=45.88 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=21.8
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+|++++|...+|||||+.+++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred cCccEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999999988
No 76
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.83 E-value=0.00043 Score=45.24 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=23.8
Q ss_pred hhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
..+..|++++|...+||||++.+++--.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999999988644
No 77
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.82 E-value=0.00039 Score=44.34 Aligned_cols=24 Identities=13% Similarity=-0.076 Sum_probs=21.9
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..|++++|...+|||||+.+++-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999874
No 78
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.81 E-value=0.00036 Score=44.71 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=22.4
Q ss_pred hhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
..+.+|++++|...+|||||+.+++--.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467999999999999999999987543
No 79
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.81 E-value=0.00035 Score=44.31 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.8
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+|++++|...+|||||+.+++--
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999998753
No 80
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.80 E-value=0.0013 Score=43.30 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=23.4
Q ss_pred hCccceeeccCCCccchhhhhhhhhhc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+..|++++|.++|||||++..++.-.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988653
No 81
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.80 E-value=0.00035 Score=44.94 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=23.1
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.++.+|++++|...+|||||+.+++-
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHc
Confidence 34579999999999999999999874
No 82
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.80 E-value=0.00033 Score=44.23 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=21.4
Q ss_pred CccceeeccCCCccchhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~ 54 (76)
+.+|++++|...+|||||+.+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999999987
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.79 E-value=0.00015 Score=47.15 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=22.6
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|++++|...+|||||+.+++-
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34579999999999999999998863
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.79 E-value=0.00034 Score=44.62 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=21.6
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+|++++|...+|||||+.+++-
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 34679999999999999999999874
No 85
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.77 E-value=0.00095 Score=43.56 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.3
Q ss_pred CccceeeccCCCccchhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~ 54 (76)
..+|++++|.+.+||||++.+++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999987
No 86
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.77 E-value=0.00047 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 4579999999999999999999874
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.76 E-value=0.0005 Score=44.43 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.5
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|++++|...+|||||+.+++-
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34579999999999999999999873
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.74 E-value=0.00048 Score=44.80 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.5
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4679999999999999999999873
No 89
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.74 E-value=0.00051 Score=44.17 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.9
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|++++|...+|||||+.+++-
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34578999999999999999999874
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.73 E-value=0.0004 Score=44.32 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+.+|++++|...+||||++.+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999999986
No 91
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.73 E-value=0.0005 Score=43.44 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=21.9
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...|++++|...+|||||+.+++--
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999999988643
No 92
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.72 E-value=0.00049 Score=45.16 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4679999999999999999988774
No 93
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00058 Score=43.18 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.1
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
..|+.++|.+.+||||++++++-
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999999874
No 94
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.71 E-value=0.00038 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999874
No 95
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.69 E-value=0.0011 Score=42.05 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3568999999999999999999874
No 96
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.69 E-value=0.00057 Score=43.15 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.7
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+|++++|...+|||||++.+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999996554
No 97
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.00037 Score=46.22 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=23.6
Q ss_pred HhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 28 IQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 28 k~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+.+|++++|...+|||||+.+++-
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHh
Confidence 3445679999999999999999999874
No 98
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.68 E-value=0.00056 Score=45.35 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999999875
No 99
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.68 E-value=0.00055 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.6
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+.+||||++.+++-
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999999999874
No 100
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.68 E-value=0.00062 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|...+|||||+.+++-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4579999999999999999999874
No 101
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.67 E-value=0.00052 Score=45.18 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=22.5
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|++++|...+|||||+.+++.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHc
Confidence 34679999999999999999999653
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.66 E-value=0.00057 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.149 Sum_probs=20.8
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+++||||++.+++-
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999885
No 103
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.66 E-value=0.00043 Score=45.34 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=23.1
Q ss_pred HHhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 27 GIQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 27 kk~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+...+.+|++++|...+|||||+.+++-
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhh
Confidence 33455679999999999999999999864
No 104
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.66 E-value=0.00063 Score=43.52 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.6
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...+|++++|...+|||||+.+++--
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34689999999999999999998743
No 105
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.65 E-value=0.0005 Score=43.42 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=12.3
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+|++++|...+|||||+.+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp SEEEEEEEECCCCC----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999886
No 106
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.65 E-value=0.00065 Score=43.30 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=22.1
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.....|++++|...+|||||+.+++-
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45678999999999999999999874
No 107
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.00061 Score=44.04 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999873
No 108
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.64 E-value=0.00064 Score=45.08 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
-+.|+|..+||||||+++++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999988
No 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.64 E-value=0.00067 Score=43.76 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...+|++++|...+|||||+.+++--
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34689999999999999999988743
No 110
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.59 E-value=0.0007 Score=43.90 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.3
Q ss_pred hCccceeeccCCCccchhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~ 53 (76)
.+.+|++++|.+.+|||||+..+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHH
Confidence 45799999999999999998854
No 111
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.59 E-value=0.0036 Score=39.52 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhc---ccceeee
Q psy6625 17 KQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTT---SKPMMIN 64 (76)
Q Consensus 17 k~IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~---~~~~~~~ 64 (76)
..+.+.+..-........-+||.|..++|||+++++++--. ..|+.+|
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~ 58 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYR 58 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEE
Confidence 33444444434444566678999999999999999988765 4566544
No 112
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.58 E-value=0.00066 Score=43.73 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=21.3
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-+.|+|..+|||||+++.+.-....+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCC
Confidence 47899999999999999987654333
No 113
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.57 E-value=0.00076 Score=43.77 Aligned_cols=23 Identities=9% Similarity=-0.026 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.|+|..+|||||+++.++-..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 46899999999999999988653
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.56 E-value=0.00085 Score=44.69 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=22.6
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+..|++++|...+|||||+.+++-
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999875
No 115
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.56 E-value=0.00074 Score=43.98 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=16.2
Q ss_pred ceeeccCCCccchhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLA 52 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~ 52 (76)
-+.|+|..+|||||++++
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999999996
No 116
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.55 E-value=0.0008 Score=44.85 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
++.|+|..+|||||+++.++-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999988554
No 117
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.54 E-value=0.00043 Score=44.32 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=7.5
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...+|++++|...+|||||+.+++--
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999988743
No 118
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.00077 Score=44.06 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|...+|||||+.+++-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999999999874
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.50 E-value=0.00091 Score=42.43 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.6
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.+.|.|..+|||||+++.+.-...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999998876543
No 120
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.50 E-value=0.00082 Score=43.73 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.8
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|...+|||||+.+++-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999999999874
No 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.49 E-value=0.00088 Score=43.57 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999998873
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.48 E-value=0.00094 Score=41.37 Aligned_cols=19 Identities=21% Similarity=0.032 Sum_probs=17.5
Q ss_pred ceeeccCCCccchhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~ 53 (76)
-++|.|..+|||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999988
No 123
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.47 E-value=0.0015 Score=45.00 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=27.4
Q ss_pred HHHHHHHhHHhhhCccceeeccCCCccchhhhhhhhhhcc
Q psy6625 19 IEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 19 IDk~L~kekk~~~~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
+-+.+.........-..++|.|..+|||||+++.+.--..
T Consensus 18 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 18 NLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3333444333334456789999999999999999876543
No 124
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.00075 Score=43.22 Aligned_cols=24 Identities=8% Similarity=0.121 Sum_probs=21.9
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|++++|...+|||||+.+++-
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999999874
No 125
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.45 E-value=0.00081 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=22.5
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+..|++++|.+.+||||++.+++-
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999873
No 126
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.45 E-value=0.00048 Score=44.69 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=21.7
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+.+|++++|...+|||||+.+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 467999999999999999998876
No 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.42 E-value=0.0011 Score=41.89 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+++.|..+|||||+.+.+.-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478899999999999998875
No 128
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.41 E-value=0.001 Score=43.10 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
....++.|+|..+|||||++++++-.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998744
No 129
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.40 E-value=0.0011 Score=42.53 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.0
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...|+.++|...+||||++++++-
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357999999999999999999874
No 130
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.40 E-value=0.0012 Score=43.55 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
+|+|.|..+|||||+++.+.--
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988543
No 131
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.39 E-value=0.001 Score=43.55 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+.|+|..+||||||+++++-
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 132
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.39 E-value=0.0012 Score=44.47 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=21.9
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++|+|...+|||||+.+++-
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 4679999999999999999998764
No 133
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.39 E-value=0.0013 Score=43.81 Aligned_cols=26 Identities=19% Similarity=-0.001 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.-..+.++|..+|||||+++.++-.-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999887654
No 134
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.36 E-value=0.0012 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.9
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+++|++|||.+.+|||+++..++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~ 34 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFM 34 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEEECcCCcCHHHHHHHHH
Confidence 357899999999999999999886
No 135
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.36 E-value=0.0019 Score=44.78 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=26.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
.+.|+|..+|||||+++.++-.- +--+.+++ .||++.|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q 73 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQ 73 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcC
Confidence 56899999999999999887653 22234443 2566655
No 136
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.36 E-value=0.0013 Score=43.50 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
+|+|.|..+|||||+++.+.--
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988643
No 137
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.35 E-value=0.00073 Score=44.18 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.1
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+..|++++|...+|||||+.+++--
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5689999999999999999998743
No 138
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.34 E-value=0.003 Score=43.40 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+-..|+|.|..+|||||+++.+.--
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988643
No 139
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.34 E-value=0.0013 Score=42.63 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999886543
No 140
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.001 Score=44.05 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=22.4
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|++++|...+|||||+.+++-
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc
Confidence 4578999999999999999999874
No 141
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.28 E-value=0.0012 Score=46.73 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=21.6
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+..+.|+|..+||||||++.++-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998643
No 142
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.28 E-value=0.0013 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+.|.|..+|||||+++.++-.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999988764
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.26 E-value=0.0015 Score=41.66 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.+.|.|..+|||||+++.+.-...
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC
Confidence 578999999999999998875443
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.25 E-value=0.0012 Score=45.76 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..++|+|+|.+.+|||||+.+++.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999764
No 145
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.24 E-value=0.0016 Score=40.84 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.|.|.|..+|||||+++.+.--..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999998865433
No 146
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.23 E-value=0.0016 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||+++.++-.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999998753
No 147
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.19 E-value=0.0017 Score=44.16 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=19.3
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
-.+.|+|..+|||||+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 148
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.19 E-value=0.0017 Score=42.80 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.|+|..+||||||++.++-.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999988653
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0018 Score=41.21 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.4
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..|+|.|..+|||||+.+.+.--
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999887653
No 150
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.16 E-value=0.0018 Score=42.43 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=20.7
Q ss_pred cceeeccCCCccchhhhhhhhhhcc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
..++|.|..+|||||+++.+.-...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999998865543
No 151
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.15 E-value=0.0018 Score=42.67 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
--+.|+|..+|||||+++.+.-..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999987544
No 152
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.15 E-value=0.002 Score=41.53 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
--++|.|..++||||++++++-..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999987543
No 153
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.14 E-value=0.0019 Score=41.37 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.4
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
..++|.|..+|||||+.+.+.-
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 154
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.13 E-value=0.003 Score=43.45 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999998765
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.12 E-value=0.002 Score=42.17 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=18.3
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+.|+|..+|||||+++.++-.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999998743
No 156
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.12 E-value=0.0032 Score=40.72 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=18.2
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
+.|+|..+|||||+++.+.-
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999875
No 157
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.07 E-value=0.0022 Score=44.16 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.3
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+||+|+|...+|||||+.++.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHh
Confidence 457999999999999999999875
No 158
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.04 E-value=0.0022 Score=42.68 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..+|||||+++.++-
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999875
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.04 E-value=0.0022 Score=42.30 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=19.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.|.|..+|||||+++.+.-
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.03 E-value=0.0024 Score=43.73 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=21.6
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....|+.++|...+|||||+.+++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~ 47 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFV 47 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHH
Confidence 356799999999999999999986
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.02 E-value=0.0023 Score=41.57 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.5
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-++|+|..+||||||+++++-
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468899999999999999884
No 162
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.01 E-value=0.0029 Score=43.32 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.7
Q ss_pred eeeccCCCccchhhhhhhhhhcccc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+|++|.+.||||||..+++.- ..|
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 689999999999999999865 544
No 163
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.00 E-value=0.0024 Score=40.65 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.8
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-++|-|..+|||||+.+.+.--...|
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 36889999999999999887554444
No 164
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.00 E-value=0.0023 Score=44.28 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999988854
No 165
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0025 Score=43.17 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+|++|+|.+.+||||++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999999987
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.98 E-value=0.0024 Score=43.35 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=21.8
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...++|+|+|...+||||++.+++-
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999863
No 167
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.97 E-value=0.0025 Score=42.31 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.|+|..+|||||+++.++-..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46799999999999999987654
No 168
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.97 E-value=0.0022 Score=41.85 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
++.+.|..+|||||+++.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999998754
No 169
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.95 E-value=0.0024 Score=40.61 Aligned_cols=22 Identities=5% Similarity=-0.229 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.|++.|..+|||||+.+.+.--
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988653
No 170
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.90 E-value=0.0027 Score=43.97 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=23.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~ 65 (76)
.+.|+|..+|||||+++.++-.. +--+.+++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 57899999999999999988653 33345544
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.90 E-value=0.0027 Score=44.75 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=20.2
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.-.++++|..+|||||+++++.-.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 336899999999999999988753
No 172
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.88 E-value=0.0025 Score=43.59 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998866
No 173
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.88 E-value=0.0029 Score=41.65 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=21.9
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-.++|.|..+|||||+.+.+.--...|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 368999999999999999987544433
No 174
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.87 E-value=0.0028 Score=43.69 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999998865
No 175
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.87 E-value=0.0025 Score=42.76 Aligned_cols=20 Identities=15% Similarity=-0.028 Sum_probs=14.3
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
-+.|+|..+|||||+++.++
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999988
No 176
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.87 E-value=0.0028 Score=43.76 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+.+|+.|+|.+.+||||++.+++-.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999998643
No 177
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.0093 Score=38.96 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+..+++++|.++|||||++..++--
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988754
No 178
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.85 E-value=0.0027 Score=43.61 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999988754
No 179
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.82 E-value=0.0025 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.4
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.-|+.++|..+|||||+++.++-..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999887653
No 180
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.82 E-value=0.0032 Score=40.42 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+.|..+|||||+++.+.--
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4789999999999999988763
No 181
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.82 E-value=0.004 Score=39.85 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.3
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.++|.|..+|||||+.+.+.--..-|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999887554433
No 182
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.82 E-value=0.0031 Score=43.68 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999988653
No 183
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.81 E-value=0.0029 Score=40.57 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-.++.|..+|||||++.+++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3578899999999999998764
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.81 E-value=0.0032 Score=40.93 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+++.|.++||||||+++++-
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999887
No 185
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.81 E-value=0.0033 Score=40.36 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=22.1
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
...|++.|..+|||||+++.+.--...|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 3468999999999999999887544333
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.81 E-value=0.0033 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.0
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+|+|.|..+|||||+++.+.--...|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58899999999999999887644433
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.79 E-value=0.0034 Score=41.13 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|.|..+|||||+++.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.78 E-value=0.006 Score=44.62 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...++++++|..++|||||+.+++.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhC
Confidence 4578999999999999999999754
No 189
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.77 E-value=0.0033 Score=43.77 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999875
No 190
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.76 E-value=0.0032 Score=41.77 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
+|+|.|..+|||||+++.+.--
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988653
No 191
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.76 E-value=0.0033 Score=44.34 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999988653
No 192
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.75 E-value=0.0067 Score=46.04 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.3
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.+|++|+|.+.+||||++.+++-
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999998874
No 193
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.75 E-value=0.0028 Score=44.15 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++|+|...+||||++.+++-
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 468999999999999999999864
No 194
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.75 E-value=0.0034 Score=43.81 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 56899999999999999988663
No 195
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.75 E-value=0.0034 Score=44.45 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999998865
No 196
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.74 E-value=0.0036 Score=39.79 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=19.7
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..|++.|..+|||||+++.+.--
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999987653
No 197
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.74 E-value=0.0035 Score=40.47 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=19.3
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
..|++.|..+|||||+++.+.-
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 198
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.73 E-value=0.0049 Score=39.53 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=21.1
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.|+|.|..+|||||+.+.+.--..-|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 58999999999999999886544444
No 199
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.73 E-value=0.0041 Score=41.31 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.4
Q ss_pred ccceeeccCCCccchhhhhhhhhhcc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-..|+|.|..+|||||+.+.+.--..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999998865443
No 200
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.73 E-value=0.0036 Score=41.34 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=19.2
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
-.-++|.|..+|||||+.+.+.-
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998764
No 201
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.71 E-value=0.0035 Score=44.78 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=24.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCcee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTV 68 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~ 68 (76)
.+.|+|..+|||||+++.++-.. +--+.+++..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 46899999999999999988543 22345555433
No 202
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.71 E-value=0.0036 Score=43.75 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998765
No 203
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.71 E-value=0.0034 Score=39.83 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.|+|.|..+|||||+.+.+.--
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999887653
No 204
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.70 E-value=0.0035 Score=40.13 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.0
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.-+++.|..+|||||+.+.+.--.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999886543
No 205
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.70 E-value=0.0036 Score=44.03 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46799999999999999988653
No 206
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.69 E-value=0.0038 Score=42.22 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999987654
No 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.69 E-value=0.0037 Score=42.55 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=20.8
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.-+-|.|..+|||||+++.++-.-
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999887643
No 208
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.69 E-value=0.0037 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.031 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998865
No 209
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.69 E-value=0.0036 Score=44.01 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||+++.++-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999998865
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.68 E-value=0.0037 Score=42.97 Aligned_cols=23 Identities=13% Similarity=-0.060 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.|+|..+|||||+++.++-.-
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 56899999999999999987543
No 211
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.68 E-value=0.0037 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998664
No 212
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.68 E-value=0.0039 Score=40.66 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=20.4
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...++|.|..+|||||+.+.+.--
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999987654
No 213
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.67 E-value=0.004 Score=39.64 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=18.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|.|..+|||||+++.+.-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988754
No 214
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.66 E-value=0.005 Score=39.16 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=19.3
Q ss_pred cceeeccCCCccchhhhhhhhhhccccee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
..|+|.|..+|||||+.+.+.--...|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 35789999999999999998765555544
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.64 E-value=0.0042 Score=40.14 Aligned_cols=23 Identities=13% Similarity=-0.006 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-++|.|..+|||||++++++-..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988654
No 216
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.64 E-value=0.0041 Score=40.92 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=20.2
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.-+.|.|..+|||||+++.+.-..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999886543
No 217
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.62 E-value=0.0032 Score=44.98 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=20.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
-.+++.|+|..++|||||++.++.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 357889999999999999999764
No 218
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.62 E-value=0.0058 Score=41.31 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred eeeccCCCccchhhhhhhhhhcccce
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
++|.|..++||||++++++-....|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 89999999999999999997665443
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.61 E-value=0.004 Score=46.05 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+++.|..+|||||++++++-.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988643
No 220
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.61 E-value=0.0041 Score=44.10 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 46799999999999999988653
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.61 E-value=0.0042 Score=41.40 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=18.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||+++.++-.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3678899999999999988754
No 222
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.60 E-value=0.0041 Score=43.66 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999987653
No 223
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.60 E-value=0.0053 Score=44.14 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=26.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeEEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVEIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (76)
.+.|+|..+|||||+++.++-.. +--+.+++ .||++.|
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q 106 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQ 106 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeC
Confidence 56899999999999999987653 22234443 3566554
No 224
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.60 E-value=0.0044 Score=39.09 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=20.8
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
.|+|.|..+|||||+.+.+.--..-|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999876544433
No 225
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.59 E-value=0.0042 Score=43.81 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998875
No 226
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.57 E-value=0.0046 Score=42.31 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.|+++|+++|||+|..+.++--.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999998877543
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.56 E-value=0.0045 Score=40.83 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-++|+|.++||||||+++++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999887
No 228
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.55 E-value=0.0041 Score=44.75 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.3
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+|++++|...+|||||+.+++.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCS
T ss_pred CcceEEEECCCCccHHHHHHHHhC
Confidence 467999999999999999998863
No 229
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.55 E-value=0.0044 Score=43.45 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999987653
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.54 E-value=0.0047 Score=39.55 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.4
Q ss_pred ceeeccCCCccchhhhhhhhhhccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
.|+|.|..+|||||+.+.+.--..-
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999988654433
No 231
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.53 E-value=0.0045 Score=43.77 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4679999999999999998854
No 232
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.52 E-value=0.0046 Score=43.43 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+.|+|..+|||||+++.++-..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999988664
No 233
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.52 E-value=0.0044 Score=44.99 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=20.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
.++++|..+|||||++++++-.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999987653
No 234
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.51 E-value=0.0047 Score=42.47 Aligned_cols=27 Identities=4% Similarity=-0.114 Sum_probs=23.9
Q ss_pred hhhCccceeeccCC---------Cccchhhhhhhhh
Q psy6625 29 QAAKDIKLLLLGEY---------FSSQMVPSLALCT 55 (76)
Q Consensus 29 ~~~~evKLLLLGaG---------ESGKST~~~~~~~ 55 (76)
.....+|++++|.+ .+|||||+.+++-
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 34567999999999 9999999999985
No 235
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.50 E-value=0.0047 Score=44.06 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4689999999999999998865
No 236
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.49 E-value=0.0045 Score=40.63 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=20.2
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
-..+.+.|..+|||||+++.+.-.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999988654
No 237
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.49 E-value=0.0045 Score=40.98 Aligned_cols=24 Identities=17% Similarity=0.002 Sum_probs=20.2
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..-+.+.|..+|||||+++.+.-
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998865
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.46 E-value=0.0047 Score=39.66 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
..+.|.|..+|||||+.+.+.--.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999998876543
No 239
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.45 E-value=0.0044 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=18.3
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
|+|+|+++|||+|..+.++---
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999998877543
No 240
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.43 E-value=0.0053 Score=43.38 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=21.1
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|+.|+|.+.+||||++.+++-
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 57999999999999999999974
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.42 E-value=0.0074 Score=39.41 Aligned_cols=29 Identities=21% Similarity=0.325 Sum_probs=23.0
Q ss_pred CccceeeccCCCccchhhhhhhhhhcccc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
....|+|.|..+|||||+.+.+.--..-|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 34578999999999999999887654444
No 242
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.41 E-value=0.0059 Score=41.72 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhhhcc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
+...|.|.|..+|||||+++.+.-.-.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345789999999999999988765433
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.41 E-value=0.0053 Score=42.52 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=18.2
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++.|..+|||||+.++++--
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 578999999999999988643
No 244
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.40 E-value=0.0051 Score=39.43 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhhhcc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
+...|.|.|..+|||||+.+.+.--..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999998865433
No 245
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.39 E-value=0.0057 Score=39.28 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+.|.|..+|||||+++.+.-.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988654
No 246
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.37 E-value=0.0058 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+|++|+|.+.+||||++.+++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999998653
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.36 E-value=0.0052 Score=42.51 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-++|.|.++||||||+++++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468899999999999999884
No 248
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.36 E-value=0.0059 Score=38.74 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=21.5
Q ss_pred cceeeccCCCccchhhhhhhhhhcccce
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
.-++|.|..+|||||+.+.+.--..-|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3578999999999999998765444443
No 249
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.36 E-value=0.0057 Score=42.77 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.4
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+.+++.|+|...+||||++.+++-
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 357999999999999999999864
No 250
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.34 E-value=0.0057 Score=44.26 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.-+.++|..+|||||+++.++-.-
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 457899999999999999988754
No 251
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.32 E-value=0.006 Score=40.71 Aligned_cols=27 Identities=15% Similarity=0.034 Sum_probs=21.9
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
..|+|.|..+|||||+.+.+.--..-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 578999999999999999886544433
No 252
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.32 E-value=0.0058 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.2
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+++.|+|..++|||||++.++-.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999999854
No 253
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.30 E-value=0.0064 Score=38.96 Aligned_cols=22 Identities=14% Similarity=-0.091 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.|.+.|..+|||||+++.+.--
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999999987654
No 254
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.30 E-value=0.0054 Score=44.88 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=21.0
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.--.+++.|..+|||||++++++-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3347899999999999999998754
No 255
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.30 E-value=0.0094 Score=41.07 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred eeeccCCCccchhhhhhhhhhcccce
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
++|.|..+|||||++++++-....|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCE
Confidence 89999999999999999987665443
No 256
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.29 E-value=0.0095 Score=42.94 Aligned_cols=31 Identities=10% Similarity=0.121 Sum_probs=25.8
Q ss_pred hCccceeeccCCCccchhhhhhhh----------hhcccce
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC----------TTTSKPM 61 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~----------~~~~~~~ 61 (76)
....++.++|...+|||||+.+++ ++|..|.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 456799999999999999999986 4566675
No 257
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.28 E-value=0.0059 Score=40.81 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=21.2
Q ss_pred ccceeeccCCCccchhhhhhhhhhcc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-..|+|.|..+|||||+++.+.--..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999998864433
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.24 E-value=0.0061 Score=39.59 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=19.7
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
-..|.|.|..+|||||+.+.+.-
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998764
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.24 E-value=0.0062 Score=46.02 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=24.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCceeE
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTVE 69 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~~ 69 (76)
-++++|..+|||||+++++.-.- +.-+.+....+|
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 47999999999999999986543 233445444444
No 260
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.23 E-value=0.006 Score=42.32 Aligned_cols=22 Identities=0% Similarity=-0.203 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-++|+|..+||||||+++++-.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4688999999999999988754
No 261
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.22 E-value=0.007 Score=39.39 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.3
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..|+|.|..+|||||+.+.+.--
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999887643
No 262
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.22 E-value=0.0059 Score=43.42 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=20.2
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
.-+-|+|..+|||||+++.++-.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999988864
No 263
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.21 E-value=0.0067 Score=39.16 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=19.3
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
.++.|..+|||||++.|+|...
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4788999999999999998654
No 264
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.20 E-value=0.0071 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=20.2
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..-++|.|..+|||||+++.+.-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999988644
No 265
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.18 E-value=0.0071 Score=38.92 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=20.2
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...+.|.|..+|||||+.+.+.--
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 456899999999999999987643
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.17 E-value=0.0076 Score=39.13 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.2
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+-..|.|.|..+|||||+++.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998864
No 267
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.16 E-value=0.0075 Score=40.58 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.|++.|..+|||||+.+.+.--
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999987643
No 268
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.14 E-value=0.0083 Score=43.70 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=21.0
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+.|+|..+||||||+.++.-
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999999874
No 269
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.13 E-value=0.0079 Score=38.83 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=19.9
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
-..|.|.|..+|||||+++.+.--
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999887643
No 270
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.12 E-value=0.02 Score=42.15 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=19.9
Q ss_pred ccc-eeeccCCCccchhhhhhhhh
Q psy6625 33 DIK-LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evK-LLLLGaGESGKST~~~~~~~ 55 (76)
.++ +.++|...+||||++++++-
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHC
Confidence 566 88999999999999999874
No 271
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.11 E-value=0.008 Score=40.59 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=20.9
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.-|.|.|..+|||||+.+.+.--
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4677889999999999999887543
No 272
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.11 E-value=0.0075 Score=41.60 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+++.|..+|||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.09 E-value=0.0075 Score=44.43 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.+++.|..+|||||+++++.-.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998753
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.08 E-value=0.0072 Score=39.82 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=17.9
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
=+++.|.++||||||+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368899999999999887764
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.07 E-value=0.0085 Score=42.46 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=19.5
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
-.-++|.|.++|||||+++.+.-
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999998864
No 276
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.05 E-value=0.0079 Score=43.91 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=19.8
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
--.+.|+|..+||||||++.+.-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34678999999999999999873
No 277
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.02 E-value=0.012 Score=41.37 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.7
Q ss_pred eeeccCCCccchhhhhhhhhhcccc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
+||.|..++||||++++++-....+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 8999999999999999998765443
No 278
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.02 E-value=0.0088 Score=39.73 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.9
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..|+|.|..+|||||+.+.+.--
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999987644
No 279
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.00 E-value=0.02 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.9
Q ss_pred hhCccceeeccCCCccchhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....++++++|...+|||||+.+++
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999999986
No 280
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.99 E-value=0.0085 Score=41.36 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=19.7
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
.-|++.|..+|||||+.+.+.--
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999988754
No 281
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.0076 Score=46.02 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=27.0
Q ss_pred CccceeeccCCCccchhhhhhhhhhc----c-cceeeeC
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT----S-KPMMINN 65 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~----~-~~~~~~~ 65 (76)
.--.+.|+|..+|||||+++.++-.. . .|+.++.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 33478999999999999999988653 3 5677765
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.96 E-value=0.016 Score=41.49 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHHhHH-hhhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 19 IEKNLKEDGI-QAAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 19 IDk~L~kekk-~~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+.+.+..... ...+...+.+.|..+|||||+++.+.-.-
T Consensus 16 l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 16 LDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444322 23345678899999999999998776543
No 283
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.94 E-value=0.031 Score=35.13 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.1
Q ss_pred hhCccceeeccCCCccchhhhhhhhhhccccee
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
.....-+||.|..++|||+++++++--.. |+.
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 34556789999999999999999886554 443
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.91 E-value=0.0098 Score=40.05 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
++.++|..+|||||+++.++-.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999987754
No 285
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.90 E-value=0.0099 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
++.|+|..+||||||++.++-.
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999998765
No 286
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.89 E-value=0.011 Score=39.82 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+...|+|.|..+|||||+.+.+.--.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999886543
No 287
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.86 E-value=0.01 Score=36.67 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=19.4
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
--+||.|..++||||+++++.--
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999887654
No 288
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.86 E-value=0.023 Score=36.86 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.6
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.-++|.|..++||||++++++--.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987644
No 289
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.83 E-value=0.011 Score=39.04 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=19.2
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
..+.|.|..+|||||+++.+.-
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998864
No 290
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.83 E-value=0.013 Score=39.58 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=23.7
Q ss_pred ceeeccCCCccchhhhhhhhhhccccee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
-+||.|..++||||++++++-....|..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 4899999999999999999877665643
No 291
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.80 E-value=0.0092 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-++++|..+|||||++++++-.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999987544
No 292
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.79 E-value=0.028 Score=42.97 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=23.2
Q ss_pred HhhhCccceeeccCCCccchhhhhhhhh
Q psy6625 28 IQAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 28 k~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..++.+|+.++|...+||||++.+++-
T Consensus 228 ~~~r~~~kV~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp HHHHHCEEEEEECCTTSSHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3345678999999999999999999863
No 293
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.77 E-value=0.01 Score=44.16 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=23.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 77 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK 77 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCE
Confidence 46799999999999999887542 223455543
No 294
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.75 E-value=0.011 Score=39.89 Aligned_cols=24 Identities=13% Similarity=-0.005 Sum_probs=20.4
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
-.-+.+.|..+|||||+++.++-.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345789999999999999998765
No 295
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.044 Score=39.49 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+++++|..++||||++.+++-
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999999875
No 296
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.75 E-value=0.01 Score=44.17 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||+++.++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4679999999999999988754
No 297
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.74 E-value=0.011 Score=40.75 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=19.4
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
...+.|.|..+|||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999886
No 298
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.72 E-value=0.01 Score=41.33 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=19.4
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.|+.|+|...||||||+.++.-
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3789999999999999999853
No 299
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.70 E-value=0.011 Score=44.06 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=23.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 46799999999999999887543 223455543
No 300
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.66 E-value=0.011 Score=44.14 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=28.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCcee--------EEeeeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTV--------EIGVLVQ 75 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~ 75 (76)
-+.|+|..+|||||+++.++-.. +--+.+++..+ .||++.|
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 46799999999999999887542 23345554332 3666655
No 301
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.66 E-value=0.011 Score=43.91 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV 65 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCE
Confidence 46799999999999999887543 223455543
No 302
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.65 E-value=0.022 Score=37.68 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.5
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
-.-+++.|..+|||||+++.+.-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998764
No 303
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.60 E-value=0.034 Score=40.23 Aligned_cols=26 Identities=12% Similarity=-0.055 Sum_probs=22.2
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+...+.+.|.+++||||++.++...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988644
No 304
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.58 E-value=0.011 Score=44.16 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=24.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCcee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNTV 68 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~~ 68 (76)
-+.|+|..+|||||+++.++-.. +--+.+++..+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 36799999999999999887542 33345555433
No 305
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.55 E-value=0.011 Score=44.82 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=17.8
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
-++|+|..+||||||+++++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999954
No 306
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.54 E-value=0.013 Score=40.48 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=21.2
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....++.++|...+|||||+.+++
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHH
Confidence 456789999999999999999984
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.53 E-value=0.013 Score=37.73 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+.|..+|||||+.+.+.-.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4788899999999999987654
No 308
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.52 E-value=0.013 Score=39.43 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=19.5
Q ss_pred eeeccCCCccchhhhhhhhhhcc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~ 58 (76)
.++.|..+|||||++.|++....
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 47789999999999999986544
No 309
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.48 E-value=0.036 Score=35.83 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=21.4
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
..--+||.|..++||||++++++--.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999886543
No 310
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.47 E-value=0.047 Score=38.90 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.8
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-++|.|..++||||++++++-...
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 479999999999999999986543
No 311
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.46 E-value=0.0098 Score=43.25 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=23.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
.+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~ 116 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCE
Confidence 57899999999999999887543 223455543
No 312
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.41 E-value=0.0063 Score=39.60 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=16.9
Q ss_pred eeeccCCCccchhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~ 54 (76)
|.+.|..+|||||+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6788999999999998874
No 313
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.39 E-value=0.014 Score=43.96 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+-|+|..+|||||+++.+.-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3679999999999999988754
No 314
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.37 E-value=0.014 Score=41.95 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
--++.++|...||||||+.+++-
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34889999999999999999875
No 315
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.37 E-value=0.01 Score=43.87 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=23.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNNT 67 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~~ 67 (76)
-+.|+|..+|||||+++.++-.. +--+.+++..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 46799999999999999887543 2234555543
No 316
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.31 E-value=0.015 Score=41.29 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=18.4
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+.|+|..+|||||+++++.-
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 467999999999999998864
No 317
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.28 E-value=0.022 Score=38.77 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=25.0
Q ss_pred ccceeeccCCCccchhhhhhhhhhccccee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
..-+||.|..++||||++++++--...|..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345899999999999999999887766654
No 318
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.27 E-value=0.012 Score=43.29 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=23.2
Q ss_pred hhCccceeeccCCCccchhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+|+.++|...+|||||+++++-
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34678999999999999999999975
No 319
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.26 E-value=0.044 Score=37.09 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.4
Q ss_pred hCccceeeccCCCccchhhhhhhhhhcc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
....-+||.|..++|||+++++++-...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3456789999999999999999987653
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.25 E-value=0.016 Score=42.52 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
=+.+.|..+||||||++.+.-.-
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998876553
No 321
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.22 E-value=0.0097 Score=43.98 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=23.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
-+.|+|..+|||||+++.++-.. +--+.+++.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 46799999999999999887542 223455543
No 322
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.22 E-value=0.069 Score=37.19 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=25.7
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccceee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMMI 63 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~~ 63 (76)
..-+||.|..++||||++++++--...|...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 3468999999999999999998877777543
No 323
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.19 E-value=0.017 Score=40.96 Aligned_cols=23 Identities=9% Similarity=-0.155 Sum_probs=20.5
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
..++.++|.+.+||||++.+++-
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999873
No 324
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.18 E-value=0.037 Score=34.28 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=20.0
Q ss_pred ccceeeccCCCccchhhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.--+||.|..++||||++++++--
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999888654
No 325
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.16 E-value=0.017 Score=43.39 Aligned_cols=22 Identities=5% Similarity=-0.136 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+-|+|..+|||||+++.++-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3578999999999999988765
No 326
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.16 E-value=0.018 Score=42.87 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.5
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+.+|++++|.+.+||||++.+++.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~ 344 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL 344 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc
Confidence 4679999999999999999999864
No 327
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.15 E-value=0.026 Score=37.60 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.7
Q ss_pred ceeeccCCCccchhhhhhhhhhccccee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
-+||.|..++||||++++++--...|..
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4799999999999999999877666654
No 328
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.06 E-value=0.016 Score=41.38 Aligned_cols=24 Identities=8% Similarity=-0.128 Sum_probs=21.1
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..++.++|.+.+||||++.+++-
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999873
No 329
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.05 E-value=0.02 Score=43.07 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.9
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-+++.|..+||||||++++|.....|
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccC
Confidence 46889999999999999888654443
No 330
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.04 E-value=0.02 Score=41.72 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.1
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-++|.|..+||||||+++++....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999998764
No 331
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.03 E-value=0.026 Score=38.71 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=24.7
Q ss_pred ccceeeccCCCccchhhhhhhhhhccccee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
..-+||.|..++||||++++++--...|..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 346899999999999999999877666553
No 332
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.02 E-value=0.02 Score=42.44 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.3
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|+.++|.+.+||||++++++-
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999999863
No 333
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.02 E-value=0.022 Score=40.55 Aligned_cols=20 Identities=15% Similarity=-0.071 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
-+.|+|..+|||||+++++.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999998
No 334
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.00 E-value=0.017 Score=43.35 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.+.-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5689999999999999987643
No 335
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.96 E-value=0.021 Score=43.48 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=23.2
Q ss_pred hhhCccceeeccCCCccchhhhhhhhh
Q psy6625 29 QAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 29 ~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+..+|+.++|...+||||++.+++-
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHH
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344678999999999999999999864
No 336
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.94 E-value=0.0071 Score=42.30 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=19.2
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+.++|..+|||||++.++|-.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 3688999999999999998763
No 337
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.028 Score=39.25 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=18.7
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
+|+.|..++||||++++++-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998776
No 338
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.89 E-value=0.021 Score=42.71 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=22.2
Q ss_pred cceeeccCCCccchhhhhhhhhhcccc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
--+++.|..+|||||++++++-..+-.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 367999999999999999998655443
No 339
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.88 E-value=0.02 Score=44.19 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 340
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.87 E-value=0.012 Score=39.28 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.+.|..+|||||+++.+.-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999987654
No 341
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.85 E-value=0.021 Score=40.14 Aligned_cols=22 Identities=23% Similarity=-0.108 Sum_probs=19.3
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
...|.|.|..+|||||+++.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999886
No 342
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.80 E-value=0.022 Score=41.34 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=20.7
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.-..+.|+|..+||||||++.+.-
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999998873
No 343
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=93.77 E-value=0.028 Score=42.37 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.4
Q ss_pred hhCccceeeccCCCccchhhhhhhhhh
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
.+..+|+.++|...+||||++.+++--
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999999999999998643
No 344
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.071 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.2
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
+||.|..++||||++++++-
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988764
No 345
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.77 E-value=0.023 Score=40.99 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.++|.++|||||++..++-.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5788999999999999988744
No 346
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.77 E-value=0.021 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.092 Sum_probs=19.0
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
.-.+|+.|+.+|||||+++.+-
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999998764
No 347
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.73 E-value=0.047 Score=36.52 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=25.6
Q ss_pred hCccceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
.+.+-+.+.|-|++||||++..+... -.+...|++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45567889999999999999988643 234455554
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.71 E-value=0.024 Score=38.97 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+.|.|..+|||||+++.++-
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 467899999999999998873
No 349
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.70 E-value=0.057 Score=40.87 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=20.8
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....+.|+|..+|||||++++++-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 344688999999999999999886
No 350
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.70 E-value=0.025 Score=42.33 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=21.7
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...+|+|.|-.+|||||+.+.++--
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998743
No 351
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.69 E-value=0.025 Score=43.66 Aligned_cols=22 Identities=18% Similarity=-0.041 Sum_probs=19.5
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.++|..+|||||+++.++-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5679999999999999998765
No 352
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.63 E-value=0.083 Score=33.41 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+|+.|..++||||++++++-
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999988764
No 353
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.58 E-value=0.026 Score=39.72 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=21.3
Q ss_pred ccceeeccCCCccchhhhhhhhhhcc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.-.+.|.|..+|||||+++.+.-...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34789999999999999998865433
No 354
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.58 E-value=0.11 Score=35.57 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.5
Q ss_pred cceeeccCCCccchhhhhhhhhhccccee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
.-+||.|..++||||++++++--...|..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46899999999999999999876666654
No 355
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.57 E-value=0.025 Score=41.96 Aligned_cols=21 Identities=5% Similarity=-0.189 Sum_probs=18.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-|+|.|..+|||||+++.+.-
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999998764
No 356
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.47 E-value=0.024 Score=43.66 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
++.++|..+|||||+++.++-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5789999999999999998765
No 357
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.39 E-value=0.029 Score=40.36 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=23.1
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
-+.|+|..+|||||++..++-. ++.-+.+++
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4789999999999999988754 344444443
No 358
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.38 E-value=0.034 Score=37.45 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.1
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+...+.|.|..+|||||+++.+.-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999987764
No 359
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.35 E-value=0.028 Score=43.28 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=23.5
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~~ 65 (76)
++.++|..+|||||+++.++-. ++--..+|+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 5789999999999999998754 233355555
No 360
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.33 E-value=0.028 Score=44.24 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998753
No 361
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.26 E-value=0.031 Score=41.51 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+++.++|.+.+||||++++++-
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999864
No 362
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.22 E-value=0.028 Score=37.99 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.3
Q ss_pred ceeeccCCCccchhhhhhhhhhccccee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
-+||.|..++||||++++++--...|..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3799999999999999999876665543
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.19 E-value=0.033 Score=37.16 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=17.8
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+.+.|..+|||||++..+.-
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 467889999999999988764
No 364
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.17 E-value=0.09 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=26.4
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccceeeeCceeEE
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMMINNNTVEI 70 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~~~~~~~~~ 70 (76)
..-+++.|...|||||++..+.---. -.|+...+.|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH--RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchhhe
Confidence 44689999999999999988754332 5566665544
No 365
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.16 E-value=0.031 Score=43.31 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||+++.++-.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4678999999999999998854
No 366
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.16 E-value=0.033 Score=38.07 Aligned_cols=25 Identities=8% Similarity=-0.109 Sum_probs=20.5
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+-.-+.+.|..+|||||+++.+.-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456889999999999999887654
No 367
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.11 E-value=0.033 Score=39.75 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=18.0
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
++|.|..+|||||+++.+.-.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEecCCCCHHHHHHHHHhh
Confidence 578899999999999987743
No 368
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.08 E-value=0.036 Score=38.93 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.4
Q ss_pred ccceeeccCCCccchhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~ 54 (76)
...+.+.|..+|||||+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999875
No 369
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.08 E-value=0.034 Score=40.21 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=19.4
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
..-++++|+.+|||||+++.+..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHH
Confidence 34579999999999999988764
No 370
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.05 E-value=0.034 Score=41.49 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+.|+|..++||||++++++-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 578999999999999999874
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.03 E-value=0.031 Score=42.44 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=20.5
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
--+++.|..+||||||+++++-..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998653
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.02 E-value=0.036 Score=37.54 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=17.0
Q ss_pred eeeccCCCccchhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~ 54 (76)
|.|.|+++|||+|+++.++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999998875
No 373
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.97 E-value=0.037 Score=38.65 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=20.6
Q ss_pred cceeeccCCCccchhhhhhhhhhc
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~ 57 (76)
--+||.|..++||||++++++-..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 357999999999999999987654
No 374
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.97 E-value=0.038 Score=42.84 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=23.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeC
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINN 65 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~ 65 (76)
++.++|..+|||||+++.++-.- +--..+|+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 67899999999999999887543 22345554
No 375
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=92.96 E-value=0.034 Score=41.32 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.3
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..+++.++|...+||||++.+++-
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~ 28 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLM 28 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHH
Confidence 3568999999999999999999974
No 376
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.95 E-value=0.05 Score=37.09 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.2
Q ss_pred ccceeeccCCCccchhhhhhhhhhccccee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
..-+||.|..++||||++++++-....|..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 446899999999999999999887777744
No 377
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.91 E-value=0.037 Score=39.32 Aligned_cols=22 Identities=5% Similarity=-0.117 Sum_probs=15.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.-|.+-|..+|||||+++.+.-
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578889999999999988765
No 378
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=92.89 E-value=0.039 Score=40.37 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=23.0
Q ss_pred hCccceeeccCCCccchhhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+..+++.++|...+||||++.+++-.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 45789999999999999999998763
No 379
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=92.86 E-value=0.04 Score=40.39 Aligned_cols=25 Identities=8% Similarity=0.099 Sum_probs=22.3
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+|+.++|...+||||++.+++-.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhCh
Confidence 4689999999999999999999864
No 380
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=92.85 E-value=0.038 Score=42.38 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=21.9
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
++.+|+.++|...+||||++.+++-
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHC
Confidence 3458999999999999999998863
No 381
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.81 E-value=0.038 Score=42.87 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=18.4
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+-|+|..+|||||+++.++-.
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999988754
No 382
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.80 E-value=0.066 Score=37.50 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=23.7
Q ss_pred ceeeccCCCccchhhhhhhhhhccccee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
-+||.|..++||||++++++.-...|..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999877665543
No 383
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.78 E-value=0.039 Score=41.12 Aligned_cols=23 Identities=4% Similarity=-0.071 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+++|+|.+.+||||++.+++-
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 56899999999999999998863
No 384
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.78 E-value=0.046 Score=37.34 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=20.8
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+-..|.+-|..+|||||+++.+.-.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4457889999999999999887654
No 385
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.78 E-value=0.038 Score=42.84 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+-|+|..+|||||+++.++-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999998854
No 386
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.73 E-value=0.038 Score=43.19 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+-++|..+|||||+++++.-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998765
No 387
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.71 E-value=0.042 Score=38.96 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=20.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...++.++|.+.+|||||+.+++-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346789999999999999998863
No 388
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.70 E-value=0.041 Score=40.23 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=18.5
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
.++.|..+|||||++.++|..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999843
No 389
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.68 E-value=0.039 Score=42.49 Aligned_cols=22 Identities=5% Similarity=-0.120 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.++|..+|||||+++.++-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5679999999999999988754
No 390
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.58 E-value=0.04 Score=40.97 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=18.3
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++.|...||||||+++++..
T Consensus 64 ~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 577899999999999998765
No 391
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.49 E-value=0.044 Score=38.49 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=19.7
Q ss_pred cceeeccCCCccchhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~ 54 (76)
.++.++|...+|||||+.+++
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 599999999999999999986
No 392
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=92.44 E-value=0.034 Score=40.76 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=21.7
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+++.++|-..+||||++.+++
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~ 31 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT 31 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 346899999999999999999997
No 393
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.44 E-value=0.045 Score=42.23 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+-|+|..+|||||+++.++-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999998854
No 394
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.42 E-value=0.048 Score=40.75 Aligned_cols=22 Identities=18% Similarity=-0.029 Sum_probs=20.3
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.|+.++|-+.+||||++.+++-
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5889999999999999999875
No 395
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.42 E-value=0.045 Score=43.08 Aligned_cols=22 Identities=9% Similarity=-0.056 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+||||||++.+.-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999998754
No 396
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.41 E-value=0.044 Score=37.54 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=19.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+||.|..++||||++++++-..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999998766543
No 397
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.35 E-value=0.052 Score=35.60 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=17.6
Q ss_pred eeeccCCCccchhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~ 55 (76)
+++-|.++||||||+.+++.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57889999999999998874
No 398
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.34 E-value=0.044 Score=40.16 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
++.|+|-..+|||||+.+++-
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eeeeeCCCCCCHHHHHHHHHc
Confidence 567999999999999998863
No 399
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.34 E-value=0.061 Score=37.93 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=24.2
Q ss_pred ceeeccCCCccchhhhhhhhhhccccee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
-+||.|..++|||+++++++--...|..
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 4899999999999999999887766654
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.32 E-value=0.049 Score=40.48 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|..+|||||++..++-.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 4789999999999999988764
No 401
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.31 E-value=0.048 Score=42.79 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.5
Q ss_pred ceeeccCCCccchhhhhhhhhh---cccceeee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT---TSKPMMIN 64 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~---~~~~~~~~ 64 (76)
-+.|+|..+|||||++..+.-. ++.-++++
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 5789999999999999987753 33444554
No 402
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.29 E-value=0.11 Score=38.15 Aligned_cols=25 Identities=4% Similarity=-0.089 Sum_probs=21.4
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
+..++.++|...+||||++.++.-.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4568999999999999999998743
No 403
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.28 E-value=0.045 Score=41.42 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+--++.|+|..+|||||+++.+.-..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44578999999999999998877654
No 404
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.28 E-value=0.2 Score=35.78 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.9
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccceee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMMI 63 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~~ 63 (76)
..-+||.|..++||||++++++-....|+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4468999999999999999998877767643
No 405
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.25 E-value=0.076 Score=35.97 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=24.8
Q ss_pred ccceeeccCCCccchhhhhhhhhhccccee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
..-+||.|..++||||++++++-....|+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999877666654
No 406
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.24 E-value=0.022 Score=41.06 Aligned_cols=24 Identities=17% Similarity=-0.056 Sum_probs=20.7
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
...|+|..+|||||++.+++....
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999876553
No 407
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=92.23 E-value=0.13 Score=39.83 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=20.8
Q ss_pred CccceeeccCCCccchhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~ 54 (76)
+..++.++|-+.+||||++.+++
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999996
No 408
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.22 E-value=0.048 Score=40.66 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=19.6
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
+|+.++|-+.+|||||+.+++-
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~ 22 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATL 22 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4789999999999999999863
No 409
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.19 E-value=0.079 Score=37.78 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=25.7
Q ss_pred cceeeccCCCccchhhhhhhhhhcccceee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPMMI 63 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~~~ 63 (76)
.-+||.|..++|||+++++++-....|+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 458999999999999999999887777653
No 410
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.14 E-value=0.053 Score=40.79 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....++.|+|...+||||++++++-
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456899999999999999999975
No 411
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.13 E-value=0.055 Score=37.75 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+++.|..++||||++++++-..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999887544
No 412
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.13 E-value=0.056 Score=38.14 Aligned_cols=27 Identities=15% Similarity=0.157 Sum_probs=21.2
Q ss_pred CccceeeccCCCccchhhhhhhhhhcc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~~ 58 (76)
.+.+|=++|..+|||||+.+.++--..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999988765443
No 413
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.12 E-value=0.054 Score=39.53 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=19.4
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
--+.++|..+|||||++..+.-.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999887654
No 414
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.10 E-value=0.13 Score=36.43 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.2
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+.+++.++|-..+||||++.++.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 356899999999999999999874
No 415
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.09 E-value=0.059 Score=39.54 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=21.8
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
...+++.++|-..+||||++.+++
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~ 29 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT 29 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Confidence 357899999999999999999987
No 416
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.09 E-value=0.052 Score=42.02 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=23.3
Q ss_pred ceeeccCCCccchhhhhhhhhhc---ccceeeeCc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT---SKPMMINNN 66 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~---~~~~~~~~~ 66 (76)
++-++|..+|||||+++.++-.. +--..+|+.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 57799999999999999887543 223455543
No 417
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.07 E-value=0.14 Score=36.33 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.3
Q ss_pred hhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 30 AAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 30 ~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.....-+|+.|..++|||+++++++--.
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3456678999999999999999988743
No 418
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.07 E-value=0.051 Score=37.55 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=20.6
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.--++|.|..++||||++++++-..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467999999999999999877543
No 419
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=92.05 E-value=0.042 Score=41.49 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|...+|||||+++++-.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5679999999999999988654
No 420
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.05 E-value=0.068 Score=41.80 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=21.8
Q ss_pred hCccceeeccCCCccchhhhhhhhhhc
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.+-..+.|+|..+|||||+++++.-..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 344568899999999999999887543
No 421
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.04 E-value=0.054 Score=43.93 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.++|...|||||++++++.+.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 46899999999999999998654
No 422
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.03 E-value=0.056 Score=39.77 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=19.3
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
..++|..+|||||++.+++...
T Consensus 29 ~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHhhh
Confidence 5788999999999999998643
No 423
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.01 E-value=0.051 Score=39.87 Aligned_cols=26 Identities=4% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+--++.|+|..++||||+++.++-..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44588999999999999998887664
No 424
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.054 Score=42.76 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
.+-|+|..+|||||+++.+.-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 467899999999999998764
No 425
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.00 E-value=0.062 Score=38.15 Aligned_cols=23 Identities=13% Similarity=-0.161 Sum_probs=19.9
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-.+++|..+|||||++.+++...
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999998653
No 426
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.95 E-value=0.022 Score=41.54 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=19.3
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
-.+.++|..++||||+++++.-
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4678999999999999999863
No 427
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=91.92 E-value=0.049 Score=40.38 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+|+.++|...+||||++.+++-
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~ 46 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLH 46 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHHh
Confidence 3468999999999999999999863
No 428
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.87 E-value=0.058 Score=43.92 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.|+|...|||||++++++.+.
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999988764
No 429
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.85 E-value=0.063 Score=36.69 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.1
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+||.|..++||||+++++.-..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58999999999999999887654
No 430
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=91.81 E-value=0.057 Score=40.78 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=22.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....|++++|...+|||||+.++.-
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHc
Confidence 3568999999999999999998864
No 431
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.74 E-value=0.059 Score=41.75 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.3
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
...+++++|...+|||||+.++.-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg 87 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLE 87 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999873
No 432
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.73 E-value=0.058 Score=39.48 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.8
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+++.|.+.||||||+++++.-.
T Consensus 64 v~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6888999999999999987543
No 433
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=91.73 E-value=0.069 Score=40.41 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=22.1
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
....++.++|-..+||||++++++-
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4568999999999999999999874
No 434
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.73 E-value=0.068 Score=37.05 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=20.9
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.--++|.|.+++||||++++++--.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999887543
No 435
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.72 E-value=0.17 Score=35.68 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.8
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+|+.|..++||||++++++-.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999987654
No 436
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.72 E-value=0.07 Score=39.50 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.5
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+|+.++|-..+||||++.+++-
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 458999999999999999998863
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.063 Score=42.40 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.5
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+-|+|..+||||||++.+.-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 579999999999999988754
No 438
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=91.66 E-value=0.12 Score=37.89 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=21.4
Q ss_pred CccceeeccCCCccchhhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~ 56 (76)
...++.++|...+|||||+.++.-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4568999999999999999998653
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.61 E-value=0.16 Score=35.25 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred ceeeccCCCccchhhhhhhhhhcccceeeeCceeEE
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMMINNNTVEI 70 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~~~~~~~~~ 70 (76)
=+|+.|.+++||||+..++-- .---++.++.|.|
T Consensus 18 gvli~G~SGaGKStlal~L~~--rG~~lvaDD~v~i 51 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID--RGHQLVCDDVIDL 51 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--TTCEEEESSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH--cCCeEecCCEEEE
Confidence 479999999999999987743 2234566666655
No 440
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.51 E-value=0.072 Score=34.87 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.0
Q ss_pred cceeeccCCCccchhhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~ 56 (76)
..+.|.|..+|||||+.+.+.-.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999876543
No 441
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.49 E-value=0.073 Score=35.77 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=17.5
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+.+.|..+|||||++..+.-
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999999987754
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.46 E-value=0.066 Score=35.99 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.|.+-|..+|||||+++.++--
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999887643
No 443
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.41 E-value=0.068 Score=39.54 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=19.8
Q ss_pred cceeeccCCCccchhhhhhhhh
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~ 55 (76)
.++.++|.+.+||||++.+++-
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998863
No 444
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.40 E-value=0.079 Score=37.72 Aligned_cols=26 Identities=19% Similarity=0.214 Sum_probs=21.2
Q ss_pred ceeeccCCCccchhhhhhhhhhcccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKP 60 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~ 60 (76)
-+++.|...||||||+.+++.-..+|
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~ 134 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLP 134 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcc
Confidence 46888999999999999998764433
No 445
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.36 E-value=0.11 Score=40.24 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.5
Q ss_pred eeeccCCCccchhhhhhhhhhccccee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
+||.|..++||||++++++-....|..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 799999999999999999977666653
No 446
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.36 E-value=0.086 Score=38.05 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.7
Q ss_pred ceeeccCCCccchhhhhhhhhhccc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSK 59 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~ 59 (76)
=+++.|...||||||+.+++.-...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3688899999999999999876433
No 447
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.18 Score=39.63 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.6
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
+..+|+.++|...+||||++.++.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll 188 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLL 188 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHH
T ss_pred CCceEEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999875
No 448
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.30 E-value=0.17 Score=36.40 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=21.0
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+-..+.++|.+++||||++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456788999999999999999863
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.24 E-value=0.071 Score=38.11 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-++++|.++|||||++..+...
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999887643
No 450
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.23 E-value=0.078 Score=37.78 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=21.0
Q ss_pred ccceeeccCCCccchhhhhhhhhhc
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
.--++|.|..++|||+++.+++--.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999887543
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.20 E-value=0.073 Score=44.66 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
.+.|+|..+|||||+++.++
T Consensus 463 ~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999987
No 452
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.18 E-value=0.087 Score=36.99 Aligned_cols=27 Identities=7% Similarity=-0.063 Sum_probs=22.3
Q ss_pred eeeccCCCccchhhhhhhhhhccccee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
+||-|..++|||+++++++--...|+.
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 455599999999999999987766654
No 453
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.15 E-value=0.073 Score=37.44 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.3
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
=+++.|...||||||+.+++.-
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3688899999999999999864
No 454
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=91.15 E-value=0.073 Score=41.57 Aligned_cols=19 Identities=11% Similarity=-0.109 Sum_probs=16.4
Q ss_pred ceeeccCCCccchhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~ 53 (76)
.+.++|..+|||||+++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4679999999999999764
No 455
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.07 E-value=0.13 Score=37.12 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=26.0
Q ss_pred cceeeccCCCccchhhhhhhhhhcccceee
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPMMI 63 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~~~ 63 (76)
.-+||.|..++|||+++++++--...|++.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 468999999999999999999887777654
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.05 E-value=0.076 Score=38.04 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=18.9
Q ss_pred eeccCCCccchhhhhhhhhhcc
Q psy6625 37 LLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 37 LLLGaGESGKST~~~~~~~~~~ 58 (76)
++.|..+|||||++.|+|....
T Consensus 27 ~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 6889999999999999876443
No 457
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.02 E-value=0.098 Score=40.19 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=23.1
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
-+||.|..++||||+++++.-....|.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 479999999999999999987776554
No 458
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=90.92 E-value=0.14 Score=40.34 Aligned_cols=24 Identities=25% Similarity=0.081 Sum_probs=21.3
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
.+..++.++|..++||||++.+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~ 30 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALL 30 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHH
Confidence 345689999999999999999998
No 459
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.80 E-value=0.17 Score=39.32 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=25.8
Q ss_pred HHHHHHHHhHH-hhhCccceeeccCCCccchhhhhhhhh
Q psy6625 18 QIEKNLKEDGI-QAAKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 18 ~IDk~L~kekk-~~~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
++.+.+++..+ .......|++.|..+|||||+.+.+.-
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHH
Confidence 34444554432 223445688899999999999998764
No 460
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.75 E-value=0.13 Score=41.55 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.5
Q ss_pred ceeeccCCCccchhhhhhhhhhcccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
.+||.|..+|||||++++++-....|.
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 589999999999999999987766554
No 461
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.75 E-value=0.085 Score=41.94 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=19.4
Q ss_pred ccceeeccCCCccchhhhhhhhh
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~ 55 (76)
.--+|+.|+.+||||++++.+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988654
No 462
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.63 E-value=0.098 Score=36.15 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=19.6
Q ss_pred eeeccCCCccchhhhhhhhhhc
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~ 57 (76)
+||.|..++||||++++++-..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999887653
No 463
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=90.60 E-value=0.11 Score=40.13 Aligned_cols=25 Identities=8% Similarity=-0.002 Sum_probs=22.5
Q ss_pred hCccceeeccCCCccchhhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~~ 55 (76)
.+..++.++|..++||||++.+++-
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 4568999999999999999999974
No 464
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.56 E-value=0.088 Score=43.95 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=19.8
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-++++|...|||||+++++..+.
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~~ 813 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLLA 813 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 47899999999999999986654
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.55 E-value=0.097 Score=37.81 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+++.|.++|||||++..+.-.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 4789999999999999887754
No 466
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.51 E-value=0.098 Score=38.88 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=18.4
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.+.|...||||||+..+.--
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 3688999999999999877654
No 467
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=90.49 E-value=0.11 Score=38.60 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=16.6
Q ss_pred ceeeccCCCccchhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLA 52 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~ 52 (76)
|++|+|-+.+|||+++..
T Consensus 1 KIvllGdsgvGKTSLl~~ 18 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKV 18 (331)
T ss_dssp CEEEECSTTSSTTHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 789999999999999964
No 468
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.41 E-value=0.091 Score=36.39 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.0
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-+||.|..++||||++++++-...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 489999999999999999887554
No 469
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.36 E-value=0.099 Score=43.40 Aligned_cols=21 Identities=5% Similarity=-0.065 Sum_probs=18.1
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-++|+|...|||||++++...
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998843
No 470
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.34 E-value=0.28 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+||.|.+++||||++++..--
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999887653
No 471
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.28 E-value=0.13 Score=39.50 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred eeeccCCCccchhhhhhhhhhccccee
Q psy6625 36 LLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
+||.|..++||||++++++--...|..
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~f~ 78 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVPFF 78 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 899999999999999999887766654
No 472
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.27 E-value=0.12 Score=40.36 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=21.3
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+-..|++-|-.+|||||+.+++.-..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999886543
No 473
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.27 E-value=0.1 Score=40.14 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-|+|.|-.+|||||+.+.+.-
T Consensus 37 lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998753
No 474
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.26 E-value=0.2 Score=38.95 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=27.7
Q ss_pred HHHHHHHHhHH-hhhCccceeeccCCCccchhhhhhhhhhc
Q psy6625 18 QIEKNLKEDGI-QAAKDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 18 ~IDk~L~kekk-~~~~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
++.+.+++..+ ...+...|.|-|-.+|||||+.+++--.-
T Consensus 379 eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 379 EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 34444555432 34456789999999999999998875543
No 475
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.26 E-value=0.11 Score=38.85 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=20.0
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+||.|..++||||++++++-..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999987544
No 476
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.21 E-value=0.11 Score=38.68 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=18.3
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-+|+.|.++|||||++.++.-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 679999999999999987653
No 477
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.19 E-value=0.22 Score=36.61 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=26.2
Q ss_pred cceeeccCCCccchhhhhhhhhhcccceeeeCceeEEe
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPMMINNNTVEIG 71 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~~~~~~~~~~~ 71 (76)
.=+|+.|.+++||||++.++.-- ---.+.+..|.|.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~--g~~lv~dD~~~i~ 180 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR--GHRLVADDNVEIR 180 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT--TCEEEESSEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc--CCceecCCeEEEE
Confidence 45899999999999999887542 2345566666653
No 478
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.17 E-value=0.11 Score=39.15 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.6
Q ss_pred cceeeccCCCccchhhhhhhhhhcccce
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
..++|.|..+|||||+.++++-....|.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4689999999999999999887666554
No 479
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.91 E-value=0.12 Score=38.57 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+++.|.+++|||||+++++.-
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999998763
No 480
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.91 E-value=0.16 Score=36.17 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.4
Q ss_pred ceeeccCCCccchhhhhhhhhhc-ccce
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT-SKPM 61 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~-~~~~ 61 (76)
-+||.|..++|||++++++.--. ..|.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 48999999999999999998765 3443
No 481
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.83 E-value=0.087 Score=43.70 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=19.0
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+.|+|...|||||++++++.+
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 3689999999999999998754
No 482
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.82 E-value=0.17 Score=36.29 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=24.7
Q ss_pred ccceeeccCCCccchhhhhhhhhhccccee
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
..-+||.|..++||||++++++--...|..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 345899999999999999999877666653
No 483
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.73 E-value=0.12 Score=36.68 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=19.2
Q ss_pred ceeeccCCCccchhhhhhhhhhc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~ 57 (76)
-+.+.|.++|||||++..++..-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46677999999999999888653
No 484
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.72 E-value=0.17 Score=36.52 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.9
Q ss_pred ceeeccCCCccchhhhhhhhhhccccee
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTSKPMM 62 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~~~~~ 62 (76)
-+||.|..++||||++++++--...|..
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999887766654
No 485
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.68 E-value=0.13 Score=37.94 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.3
Q ss_pred eeeccCCCccchhhhhhhhhh
Q psy6625 36 LLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 36 LLLLGaGESGKST~~~~~~~~ 56 (76)
+++.|.+.||||||+.+++.-
T Consensus 66 i~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688899999999999988754
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.59 E-value=0.094 Score=44.01 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.+.|+|..+|||||+++.++-.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 487
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.59 E-value=0.23 Score=34.59 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=23.8
Q ss_pred cceeeccCCCccchhhhhhhhhhcccce
Q psy6625 34 IKLLLLGEYFSSQMVPSLALCTTTSKPM 61 (76)
Q Consensus 34 vKLLLLGaGESGKST~~~~~~~~~~~~~ 61 (76)
--+||.|..++||||++++++-....|.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3689999999999999999987666554
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.57 E-value=0.12 Score=36.17 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=20.9
Q ss_pred ceeeccCCCccchhhhhhhhhhcc
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTTTS 58 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~~~ 58 (76)
-+||.|..++||||++++++--..
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999876554
No 489
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=89.57 E-value=0.12 Score=38.92 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
..+++.++|-..+||||++.+++-
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~ 29 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIY 29 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999864
No 490
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=89.45 E-value=0.1 Score=39.59 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.6
Q ss_pred CccceeeccCCCccchhhhhhhhhhc
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCTTT 57 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~~~ 57 (76)
+.+++.++|...+||||++.+++-..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC
Confidence 46899999999999999999987543
No 491
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.40 E-value=0.14 Score=37.14 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=18.2
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+++.|.++|||||++..+...
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778899999999999877643
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.37 E-value=0.14 Score=37.82 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.7
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
.++|.|...|||||+.+.+.--
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999877643
No 493
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=89.36 E-value=0.14 Score=37.93 Aligned_cols=21 Identities=14% Similarity=-0.134 Sum_probs=18.9
Q ss_pred ceeeccCCCccchhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~ 55 (76)
-..++|..+|||||++.+++.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 357899999999999999986
No 494
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.34 E-value=0.14 Score=36.42 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=18.6
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
=+++-|.+.+|||||+.+++.-
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3678889999999999998754
No 495
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.16 E-value=0.25 Score=36.33 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.3
Q ss_pred ccceeeccCCCccchhhhhhhhhhcccceeeeCceeEEe
Q psy6625 33 DIKLLLLGEYFSSQMVPSLALCTTTSKPMMINNNTVEIG 71 (76)
Q Consensus 33 evKLLLLGaGESGKST~~~~~~~~~~~~~~~~~~~~~~~ 71 (76)
..=+|+.|.+++||||+..++ +- .---.++++.|.|-
T Consensus 147 g~gvli~G~sG~GKStlal~l-~~-~G~~lv~DD~v~i~ 183 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDL-IN-KNHLFVGDDAIEIY 183 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHH-HT-TTCEEEEEEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHH-HH-cCCEEEeCCEEEEE
Confidence 334799999999999999885 32 33345666666653
No 496
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=89.09 E-value=0.15 Score=38.17 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=20.9
Q ss_pred hCccceeeccCCCccchhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLAL 53 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~ 53 (76)
+..+++.++|...+||||++.++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~L 37 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQI 37 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999999999887
No 497
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.08 E-value=0.16 Score=37.73 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=21.6
Q ss_pred hCccceeeccCCCccchhhhhhhh
Q psy6625 31 AKDIKLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 31 ~~evKLLLLGaGESGKST~~~~~~ 54 (76)
....|+.++|.+.+||||++.+++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~ 216 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAML 216 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHh
Confidence 356899999999999999999987
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.06 E-value=0.15 Score=37.74 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=18.8
Q ss_pred ceeeccCCCccchhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALC 54 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~ 54 (76)
++.++|-+.+||||++..++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~ 22 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLV 22 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999987
No 499
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=89.00 E-value=0.14 Score=40.01 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.6
Q ss_pred CccceeeccCCCccchhhhhhhhh
Q psy6625 32 KDIKLLLLGEYFSSQMVPSLALCT 55 (76)
Q Consensus 32 ~evKLLLLGaGESGKST~~~~~~~ 55 (76)
+..+++++|...+||||++.+++-
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~ 26 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRK 26 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999873
No 500
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.91 E-value=0.13 Score=36.44 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=19.1
Q ss_pred ceeeccCCCccchhhhhhhhhh
Q psy6625 35 KLLLLGEYFSSQMVPSLALCTT 56 (76)
Q Consensus 35 KLLLLGaGESGKST~~~~~~~~ 56 (76)
-+|+-|.+++|||||..+++-.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999888754
Done!