RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6625
(76 letters)
>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 39.1 bits (92), Expect = 4e-05
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 14 ARSKQIEKNLKEDGIQAAKDIKLLLLG 40
R+K+IEK L+E+ + +++KLLLLG
Sbjct: 2 RRNKEIEKQLEEERKKKKREVKLLLLG 28
>gnl|CDD|184703 PRK14485, PRK14485, putative bifunctional cbb3-type cytochrome c
oxidase subunit I/II; Provisional.
Length = 712
Score = 26.6 bits (59), Expect = 1.2
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 9 ERAALARSKQIEKNLKEDGIQAAKD 33
+ +++ I +L DG + A D
Sbjct: 660 QADLREQAEAIAADLAADGFKVAPD 684
>gnl|CDD|236420 PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated.
Length = 456
Score = 26.0 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 5 MSAEERAALARSKQI-------EKNLKEDGIQAAKD 33
++ E A LARS + E NL DGI A D
Sbjct: 275 LTDAETARLARSGAVAGLCPTTEANLG-DGIFPAVD 309
>gnl|CDD|151608 pfam11166, DUF2951, Protein of unknown function (DUF2951). This
family of proteins has no known function. It has a
highly conserved sequence.
Length = 97
Score = 25.1 bits (55), Expect = 2.9
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 12 ALARSKQIEKNLKEDGIQAAKDIKLLLLG 40
++ R ++++K KE+ + KD+K+ +LG
Sbjct: 49 SINRERELDKENKEENRKNIKDVKMWILG 77
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 25.1 bits (55), Expect = 4.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 29 QAAKDIKLLLLGEYFSSQMVPSLALCTTTSKPMMINNNTVEIGVLVQ 75
Q AK K++ E F MVP AL + M IN V +G LV+
Sbjct: 124 QEAKSSKIM---ESFK-NMVPQQALVIRDGEKMSINAEQVVVGDLVE 166
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 25.0 bits (54), Expect = 5.3
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 2 GCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSK 59
G A + RAALA ++++ KNL+E G Q ++ + L + S AL + SK
Sbjct: 113 GRAEAEGLRAALAGAEEVRKNLEEGGQQELEEAQRLHQEQLSSLTQAHLEALSSLRSK 170
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate
dehydrogenases (LDH) are tetrameric enzymes catalyzing
the last step of glycolysis in which pyruvate is
converted to L-lactate. This subgroup is composed
predominantly of bacterial LDHs and a few fungal LDHs.
Bacterial LDHs may be non-allosteric or may be activated
by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 308
Score = 24.8 bits (55), Expect = 5.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 4 AMSAEERAALARSKQIEKNLKED 26
+S EE AL S ++ K E
Sbjct: 285 PLSEEEEEALRASAEVLKEAIES 307
>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional.
Length = 262
Score = 24.1 bits (52), Expect = 9.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 17 KQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMV 48
KQI + KE GI + +K ++LG+
Sbjct: 197 KQIPEQAKELGISEEEVVKKVMLGKTVDGVFT 228
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.127 0.337
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,588,886
Number of extensions: 263433
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 9
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)