RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6625
(76 letters)
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 57.4 bits (138), Expect = 1e-11
Identities = 24/39 (61%), Positives = 35/39 (89%)
Query: 2 GCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLG 40
GC +SAE++AA+ RSK I++NL+EDG +AA+++KLLLLG
Sbjct: 1 GCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLG 39
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 55.5 bits (133), Expect = 5e-11
Identities = 23/40 (57%), Positives = 35/40 (87%)
Query: 1 MGCAMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLG 40
MGC +SAE++AA+ RSK I++NL+EDG ++A+ +K+LLLG
Sbjct: 1 MGCTLSAEDKAAVERSKMIDRNLREDGERSARLVKILLLG 40
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal
transducing protein, cyclase, effector enzyme; HET: GSP
FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB:
1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C*
1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C*
3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 51.7 bits (123), Expect = 1e-09
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 1 MGCAMSA-------EERAALARSKQIEKNLKEDGIQAAKDIKLLLLG 40
MGC ++ EE+A +K+IEK L++D +LLLLG
Sbjct: 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLG 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 4e-04
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 22/51 (43%)
Query: 20 EKN-LKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKPMMINNNTVE 69
EK LK+ +QA+ +KL ++ P+LA+ T+E
Sbjct: 18 EKQALKK--LQAS--LKL------YADDSAPALAI-----------KATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.24
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 7 AEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMV 48
A + AL + +K + I ++ L + S + V
Sbjct: 1856 AGDLRALDTVTNVLNFIK------LQKIDIIELQKSLSLEEV 1891
>1f1s_A Hyaluronate lyase; the structure consists of three distinct
structural domains: two beta domains at two terminals
and one alpha domain in the middle of the sequence.;
2.10A {Streptococcus agalactiae} SCOP: a.102.3.2
b.1.18.2 b.24.1.1 b.30.5.2 PDB: 1i8q_A* 1lxm_A*
Length = 814
Score = 27.1 bits (59), Expect = 0.52
Identities = 9/73 (12%), Positives = 16/73 (21%), Gaps = 4/73 (5%)
Query: 4 AMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKPMMI 63
+ LA SK++E Q D + +K +
Sbjct: 728 NIDRTSFDKLANSKEVELLENSSKQQVIYDKNSQTWAVIKHDNQESLINNQFKMNKAGLY 787
Query: 64 ----NNNTVEIGV 72
N +
Sbjct: 788 LVQKVGNDYQNVY 800
>1n7o_A Hyaluronidase; protein mutant, lyase; 1.50A {Streptococcus
pneumoniae} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB:
1egu_A 1c82_A 1f9g_A* 1ojp_A* 1w3y_A* 2brp_A* 2brv_X
2brw_A 1lxk_A* 1loh_A* 1ojm_A* 1n7p_A 1ojn_A* 1n7n_A
1ojo_A* 1n7r_A* 1n7q_A*
Length = 721
Score = 25.9 bits (56), Expect = 1.3
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 4 AMSAEERAALARSKQIEKNLKEDGIQAAKDIKLLLLGEYFSSQMVPSLALCTTTSKPMMI 63
+ + + + + +Q+ D K + G V +++ K +
Sbjct: 631 NVDRATFNQMIKELESSLIENNETLQSVYDAKQGVWGIVKYDDSVSTISNQFQVLKRGVY 690
Query: 64 ----NNNTVEIGV 72
+ +I
Sbjct: 691 TIRKEGDEYKIAY 703
>2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation;
HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A
1p4d_A
Length = 301
Score = 25.8 bits (56), Expect = 1.6
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 14 ARSKQIEKNLKEDGIQAAKDI 34
RS+ I + + ED ++D+
Sbjct: 236 GRSQTIREAVGEDASLKSRDV 256
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 25.2 bits (56), Expect = 2.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 9 ERAALARSKQIEKNLKEDGIQA 30
+ L + + K L GI+A
Sbjct: 111 TQEELDVERNLVKQLTILGIEA 132
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.3 bits (52), Expect = 3.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 15 RSKQIEKNLKEDGIQAAK 32
+S+Q+EKN + I
Sbjct: 127 QSEQVEKNKINNRIADKA 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.337
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,040,179
Number of extensions: 46756
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 18
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)