RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6625
         (76 letters)



>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli
           [TaxId: 562]}
          Length = 307

 Score = 24.5 bits (53), Expect = 1.2
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 14  ARSKQIEKNLKEDGIQAAKDI 34
            RS+ I + + ED    ++D+
Sbjct: 236 GRSQTIREAVGEDASLKSRDV 256


>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 169

 Score = 23.5 bits (50), Expect = 2.8
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 5   MSAEERAALARSKQIEKNLKEDGIQAAKDI 34
           +S  E   +A +    K   + G +  K++
Sbjct: 140 ISPFEEKMIAEAIPELKASIKKGEEFVKNM 169


>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
          8355]}
          Length = 26

 Score = 22.0 bits (46), Expect = 3.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 3  CAMSAEERAALARSKQIEKN 22
          C  S  E++AL+R +++ KN
Sbjct: 6  CERSFVEKSALSRHQRVHKN 25


>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX
          {Escherichia coli [TaxId: 562]}
          Length = 328

 Score = 23.3 bits (50), Expect = 3.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 9  ERAALARSKQIEKNLKEDGIQAAKD 33
          E AALA  K + +  K     AA +
Sbjct: 16 ESAALAGYKWLGRGDKNTADGAAVN 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.127    0.337 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 238,917
Number of extensions: 8000
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 6
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)