BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6626
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ACV|A Chain A, Listeria Monocytogenes Antigen B
          Length = 129

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 17  DDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTG 68
           + Q  W+E+     H+ +N  D    ++      +G  +P+GY ++     G
Sbjct: 49  ESQTAWKEKYRFAIHHYTNEQDLAGVEMIDTLIQMGFILPEGYKLVAVRHCG 100


>pdb|4ACV|B Chain B, Listeria Monocytogenes Antigen B
          Length = 129

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 17  DDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIKSTPTG 68
           + Q  W+E+     H+ +N  D    ++      +G  +P+GY ++     G
Sbjct: 49  ESQTAWKEKYRFAIHHYTNEQDLAGVEMIDTLIQMGFILPEGYKLVAVRHCG 100


>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating
          Factor-Ii From The Beetle Holotrichia Diomphalia
          Length = 394

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 47 IFPTLGEFVPDGYDVIKSTPTG 68
          IF    E++P GY+++   P G
Sbjct: 8  IFGNASEYIPPGYEIVTKAPLG 29


>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
 pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
 pdb|2XBF|A Chain A, Nedd4 Hect Structure
          Length = 386

 Score = 25.8 bits (55), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 10  FVVCGLPD-DQAEWEEETSEHSHYKSNH 36
            ++CGL D D  +W E T   + Y +NH
Sbjct: 261 LLMCGLGDVDVNDWREHTKYKNGYSANH 288


>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
          Length = 939

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 43  DLAVIFPTLGEFVPDGYDVIKS 64
           D+A+  P L  ++PD + +IKS
Sbjct: 472 DIALSLPELNPYIPDDFSLIKS 493


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,536,394
Number of Sequences: 62578
Number of extensions: 85502
Number of successful extensions: 155
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 14
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)