RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6626
         (69 letters)



>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
           transformylase PurT, N-domain {Escherichia coli [TaxId:
           562]}
          Length = 111

 Score = 23.7 bits (51), Expect = 1.8
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 4   RRVADYFVVCGLPDDQAEWEEETSEHSHYKSNHNDAPITDLAVIFPTLGEFVPDGYDVIK 63
             VA    V  + D  A       E  HY     +A  TD       L +   +G +V+ 
Sbjct: 49  MHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATD------MLIQLEEEGLNVVP 102

Query: 64  S 64
            
Sbjct: 103 C 103


>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 232

 Score = 22.1 bits (47), Expect = 7.3
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 27 SEHSHYKSNHNDAPITDLAVIFPTLGEFVPD-GYDVIKSTPTGT 69
           +  +  + ++D P   L   F   GEF+P+ G  V+     G+
Sbjct: 3  KDLDYISTANHDQPPRHLGSRFSAEGEFLPEPGNTVVCHLVEGS 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,414
Number of extensions: 9810
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)