BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6627
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 8 VKDEALSNAATPTFH-KSCEK------ALLYHKELMISLLFTSPLTKRSDAI-------- 52
V D+A+ + + F K C + A E L +P+ SD I
Sbjct: 207 VDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQ 266
Query: 53 ---LFLSAGK-IDYCLLRLESGRLKVHINLGAGDTE-ISTPRGLRLDDLLWHSVNVTRIE 107
L L GK DY L L++G + + INLG+G E + P + +D WH V VTR
Sbjct: 267 RNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNL 326
Query: 108 ANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIE-WLRGCLSDVIYN 166
VT++VD I TT + L ++GG +L + GCL +V+Y
Sbjct: 327 RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYK 386
Query: 167 NID 169
N D
Sbjct: 387 NND 389
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 39 LLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLW 98
L F T IL+ S D+ ++ L G L +LG G I L+D W
Sbjct: 871 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQW 930
Query: 99 HSVNVTRIEANV-TLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI---- 153
H+V ++R +N+ T+ +D TT ++ L++ L+IGG T L +
Sbjct: 931 HNVMISRDTSNLHTVKIDTKITT--QITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAK 988
Query: 154 EWLRGCLSDVIYN 166
E +GCL+ V N
Sbjct: 989 EGFQGCLASVDLN 1001
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 1113 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 1171
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG+ + +G LS + YN + L
Sbjct: 1172 -SWPVIERYPAGRQLTIFNSQATIIIGGK--------EQGQPFQGQLSGLYYNGLKVL 1220
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGKIDYCLLRLE--SGRLKVHINLGAGDTEISTPRG---- 90
+SL F S +R+ IL + + LRLE +GR+K+ +NL ++ +G
Sbjct: 684 VSLRFRS---QRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETL 740
Query: 91 ---LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIH 134
L+D WH+V V R ++ LTVD ++ G L H
Sbjct: 741 FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH 787
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 19 PTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRL-ESGRLKVHIN 77
P ++ CE + + + + R + F G D+ L L GRL++ +
Sbjct: 14 PKWNACCESEMSFQLKTR---------SARGLVLYFDDEGFCDFLELILTRGGRLQLSFS 64
Query: 78 LGAGDTEI---STPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIH 134
+ + TP ++D WH+V + R N TL +D + + ++ K ++ +
Sbjct: 65 IFCAEPATLLTDTP----VNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVF 120
Query: 135 YGLFIGG 141
GLF+GG
Sbjct: 121 SGLFVGG 127
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIH 118
K+D+ + + G L + +++G+G +I + +++D W+ V+ R + T++V+ +
Sbjct: 479 KVDFFAIEMLDGHLYLLLDMGSGTIKIKALQK-KVNDGEWYHVDFQRDGRSGTISVNTLR 537
Query: 119 TTFEKLPGKFFELNIHYGLFIGG 141
T + PG+ L++ L++GG
Sbjct: 538 TPYTA-PGESEILDLDDELYLGG 559
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 8 VKDEALSNAATPTFH-KSCEK------ALLYHKELMISLLFTSPLTKRSDAI-------- 52
V D+A+ + + F K C + A E L +P+ SD I
Sbjct: 207 VDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQ 266
Query: 53 ---LFLSAGK-IDYCLLRLESGRLKVHINLGAGDTE-ISTPRGLRLDDLLWHSVNVTRIE 107
L L GK DY L L++G + + INLG+G E + P + +D WH V VTR
Sbjct: 267 RNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNL 326
Query: 108 ANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIE-WLRGCLSDVIYN 166
VT++VD I TT + L ++GG +L + GCL +V+Y
Sbjct: 327 RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYK 386
Query: 167 NID 169
N D
Sbjct: 387 NND 389
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGKIDYCLLRLE--SGRLKVHINLGAGDTEISTPRGLRLD 94
+SL F S +R+ IL + + LRLE +GR+K+ +NLG G + G L+
Sbjct: 684 VSLRFRS---QRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFA--GYNLN 738
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIH 134
D WH+V V R ++ LTVD ++ G L H
Sbjct: 739 DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH 778
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 39 LLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLW 98
L F T IL+ S D+ ++ L G L +LG G I L+D W
Sbjct: 862 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQW 921
Query: 99 HSVNVTRIEANV-TLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI---- 153
H+V ++R +N+ T+ +D TT ++ L++ L+IGG T L +
Sbjct: 922 HNVMISRDTSNLHTVKIDTKITT--QITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAK 979
Query: 154 EWLRGCLSDVIYN 166
E +GCL+ V N
Sbjct: 980 EGFQGCLASVDLN 992
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 1104 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 1162
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG+ + +G LS + YN + L
Sbjct: 1163 -SWPVIERYPAGRQLTIFNSQATIIIGGK--------EQGQPFQGQLSGLYYNGLKVL 1211
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 19 PTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRL-ESGRLKVHIN 77
P ++ CE + + + + R + F G D+ L L GRL++ +
Sbjct: 14 PKWNACCESEMSFQLKTR---------SARGLVLYFDDEGFCDFLELILTRGGRLQLSFS 64
Query: 78 LGAGDTEI---STPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIH 134
+ + TP ++D WH+V + R N TL +D + + ++ K ++ +
Sbjct: 65 IFCAEPATLLTDTP----VNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVF 120
Query: 135 YGLFIGG 141
GLF+GG
Sbjct: 121 SGLFVGG 127
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIH 118
K+D+ + + G L + +++G+G +I + +++D W+ V+ R + T++V+ +
Sbjct: 479 KVDFFAIEMLDGHLYLLLDMGSGTIKIKALQ-KKVNDGEWYHVDFQRDGRSGTISVNTLR 537
Query: 119 TTFEKLPGKFFELNIHYGLFIGG 141
T + PG+ L++ L++GG
Sbjct: 538 TPYTA-PGESEILDLDDELYLGG 559
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 40 LFTSPLTKRSDAI-----------LFLSAGK-IDYCLLRLESGRLKVHINLGAGDTE-IS 86
L +P+ SD I L L GK DY L L++G + + INLG+G E +
Sbjct: 20 LSQNPIQSSSDEITLSFKTLQRNGLXLHTGKSADYVNLALKNGAVSLVINLGSGAFEALV 79
Query: 87 TPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFT 146
P + +D WH V VTR VT++VD I TT + L ++GG
Sbjct: 80 EPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTXLGSDDFFYVGGSPSTA 139
Query: 147 ELFLGHIE-WLRGCLSDVIYNNID 169
+L + GCL +V+Y N D
Sbjct: 140 DLPGSPVSNNFXGCLKEVVYKNND 163
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 40 LFTSPLTKRSDAI-----------LFLSAGK-IDYCLLRLESGRLKVHINLGAGDTE-IS 86
L +P+ SD I L L GK DY L L++G + + INLG+G E +
Sbjct: 21 LSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALV 80
Query: 87 TPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFT 146
P + +D WH V VTR VT++VD I TT + L ++GG
Sbjct: 81 EPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTA 140
Query: 147 ELFLGHIE-WLRGCLSDVIYNNID 169
+L + GCL +V+Y N D
Sbjct: 141 DLPGSPVSNNFMGCLKEVVYKNND 164
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 39 LLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLW 98
L F T IL+ S D+ ++ L G L +LG G I L+D W
Sbjct: 646 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQW 705
Query: 99 HSVNVTRIEANV-TLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI---- 153
H+V ++R +N+ T+ +D TT ++ L++ L+IGG T L +
Sbjct: 706 HNVMISRDTSNLHTVKIDTKITT--QITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAK 763
Query: 154 EWLRGCLSDVIYN 166
E +GCL+ V N
Sbjct: 764 EGFQGCLASVDLN 776
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 888 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 946
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 947 -SWPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 995
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGKIDYCLLRLE--SGRLKVHINLGAGDTEISTPRG---- 90
+SL F S +R+ IL + + LRLE +GR+K+ +NL ++ +G
Sbjct: 459 VSLRFRS---QRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETL 515
Query: 91 ---LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIH 134
L+D WH+V V R ++ LTVD ++ G L H
Sbjct: 516 FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH 562
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIH 118
K+D+ + + G L + +++G+G +I + +++D W+ V+ R + T++V+ +
Sbjct: 254 KVDFFAIEMLDGHLYLLLDMGSGTIKIKALQK-KVNDGEWYHVDFQRDGRSGTISVNTLR 312
Query: 119 TTFEKLPGKFFELNIHYGLFIGG 141
T + PG+ L++ L++GG
Sbjct: 313 TPYTA-PGESEILDLDDELYLGG 334
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIH 118
++DY L+L+ GRL +LG G T++S P L D WH+V I+ +TVD
Sbjct: 68 QMDYATLQLQEGRLHFMFDLGKGRTKVSHP--ALLSDGKWHTVKTEYIKRKAFMTVDGQE 125
Query: 119 TTFEKLPGKFFELNIHYGLFIGG-QGDFTELFLGHI-EWLRGCLSDVIYNN 167
+ + GK L++ L++GG + +G I + C+ +++ N
Sbjct: 126 SPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNG 176
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 34 ELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGD-TEISTPRGLR 92
+L I+L F + T ++ +L +S+ K+D L + G++ H+N GAG T PR R
Sbjct: 221 DLQITLEFRT--TSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAAR 278
Query: 93 -LDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELFL 150
L D WH++ + + + LTVD E + + +++GG + L
Sbjct: 279 ALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPAHIKQNSL 338
Query: 151 GHIEWLRGCLSDV 163
RGC+ ++
Sbjct: 339 SSRASFRGCVRNL 351
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN
4 (With No Splice Insert)
Length = 182
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGKIDYCLLRLE--SGRLKVHINLGAGDTEISTPRGLRLD 94
+SL F S +R+ IL + + LRLE +GR+K+ +NLG G + G L+
Sbjct: 31 VSLRFRS---QRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFA--GYNLN 85
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIH 134
D WH+V V R ++ LTVD ++ G L H
Sbjct: 86 DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH 125
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 39 LLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLW 98
L F T IL+ S D+ ++ L G L +LG G I L+D W
Sbjct: 30 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQW 89
Query: 99 HSVNVTRIEANV-TLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI---- 153
H+V ++R +N+ T+ +D TT ++ L++ L+IGG T L +
Sbjct: 90 HNVMISRDTSNLHTVKIDTKITT--QITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAK 147
Query: 154 EWLRGCLSDVIYN 166
E +GCL+ V N
Sbjct: 148 EGFQGCLASVDLN 160
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 272 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 330
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 331 S-WPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 379
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 46 TKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVN 102
T + +A+L S+G DY L + G++ V N+G D I + ++D +H V
Sbjct: 87 TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVR 145
Query: 103 VTRIEANVTLTVDLIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRG 158
TR N TL VD E+ P + N + IGG QG + +G
Sbjct: 146 FTRSGGNATLQVDSW-PVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQG 194
Query: 159 CLSDVIYNNIDTL 171
LS + YN + L
Sbjct: 195 QLSGLYYNGLKVL 207
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 46 TKRSDAILF---LSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVN 102
T + +A+L S+G DY L + G++ V N+G D I + ++D +H V
Sbjct: 73 TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVR 131
Query: 103 VTRIEANVTLTVDLIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRG 158
TR N TL VD E+ P + N + IGG QG + +G
Sbjct: 132 FTRSGGNATLQVDSW-PVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQG 180
Query: 159 CLSDVIYNNIDTL 171
LS + YN + L
Sbjct: 181 QLSGLYYNGLKVL 193
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 60 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 118
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 119 S-WPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 167
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 52 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 110
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 111 S-WPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 159
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 53 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 111
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 112 S-WPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 160
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 52 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 110
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 111 S-WPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 159
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|B Chain B, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|C Chain C, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
Length = 178
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
+ G D+ L +E G++ V N+G D I R ++D +H V TR AN TL VD
Sbjct: 52 APGLGDFLQLHIEQGKIGVVFNIGTVDISIKEER-TPVNDGKYHVVRFTRNGANATLQVD 110
Query: 116 LIHTTFEKLPGKFFEL-NIHYGLFIGGQGDFTELFLGHIEWL 156
G+ + N + IGG+ D LF G + L
Sbjct: 111 NWPVNEHYPTGRQLTIFNTQAQIAIGGK-DKGRLFQGQLSGL 151
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 51 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 109
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGG--QGDFTELFLGHIEWLRGCLSDVIYNNIDTL 171
E+ P + N + IGG QG + +G LS + YN + L
Sbjct: 110 S-WPVIERYPAGRQLTIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKVL 158
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
++G DY L ++ G + V N+G D I P + + D +H V TR N TL VD
Sbjct: 49 ASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAI-VSDGKYHVVRFTRSGGNATLQVD 107
Query: 116 LIHTTFEKLPG--KFFELNIHYGLFIGGQGDFTELFLGHIEWL 156
E+ P + N + IGG+ D F G + L
Sbjct: 108 SWPVN-ERYPAGRQLTIFNSQAAIKIGGR-DQGRPFQGQVSGL 148
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 37.7 bits (86), Expect = 0.004, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 46 TKRSDAILFL--SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNV 103
T +D +LF SA ID+ + + G++ ++G+G + P L +DD W+ +
Sbjct: 41 TAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYP-DLTIDDSYWYRIEA 99
Query: 104 TRIEANVTLTV--------DLIHTTFEKL--PG-KFFELNIHYGLFIGG-QGDFTELFLG 151
+R N +++V ++ +T+ + PG +++ + LF+GG G +
Sbjct: 100 SRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTGKIKKADAV 159
Query: 152 HIEWLRGCLSDVIYNN 167
+ GC+ + ++N
Sbjct: 160 RVITFTGCMGETYFDN 175
Score = 32.7 bits (73), Expect = 0.13, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 62 YCLLRLESGRLKVHINLGAGDTE--ISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHT 119
Y + L GRL+VH++ G + P R D HSV+V R T+ +D
Sbjct: 434 YYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRR 493
Query: 120 TFEKLPGKFFELNIHY-GLFIGGQ-GDFTELFLGHIEWLRGCLSDVIYNNI 168
+ L E I LF+GG +F L +I +GC+ +++ N+I
Sbjct: 494 HMQNLTE---EQPIEVKKLFVGGAPPEFQPSPLRNIPAFQGCVWNLVINSI 541
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 61 DYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTT 120
D+ L L+ G L LG+G+ + + ++D WH V R ++ VD
Sbjct: 62 DFISLGLQDGHLVFRYQLGSGEARLVSED--PINDGEWHRVTALREGRRGSIQVDGEELV 119
Query: 121 FEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI-EWLRGCLSDVI 164
+ PG +N ++IGG D L G + GC+ +++
Sbjct: 120 SGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLV 164
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
++G DY L ++ G + V N+G D I P + + D +H V TR N TL VD
Sbjct: 52 ASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAI-VSDGKYHVVRFTRSGGNATLQVD 110
Query: 116 LIHTTFEKLPGKFFE 130
E+ P F+
Sbjct: 111 SWPVN-ERYPAGNFD 124
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 46 TKRSDAILFLSA--GKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNV 103
T+ +LF A D+ ++L +G +LG+GDT P +++D WH + +
Sbjct: 67 TEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIP--TKINDGQWHKIKI 124
Query: 104 TRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQG-DFTELFLGHIEW-LRGCLS 161
R++ L VD + P K L++ L++GG ++T +G + + L GC+
Sbjct: 125 VRVKQEGILYVDDASSQTIS-PKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVR 183
Query: 162 DV 163
++
Sbjct: 184 NL 185
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 34 ELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAG------DTEIST 87
+L++ F + T+ + +L +S+ K+D + + +L H++ GAG D EI
Sbjct: 233 DLLVEFEFRT--TRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPG 290
Query: 88 PRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFT 146
+ + WH V +I+ + L VD + + + +F+GG G
Sbjct: 291 ----HMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLN 346
Query: 147 ELFLGHIEWLRGCL 160
+ L RGC+
Sbjct: 347 QFGLTTNIRFRGCI 360
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 51 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 109
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 56 SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
S+G DY L + G++ V N+G D I + ++D +H V TR N TL VD
Sbjct: 58 SSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI-INDGKYHVVRFTRSGGNATLQVD 116
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 34 ELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAG------DTEIST 87
+L++ F + T+ + +L +S+ K+D + + +L H++ GAG D EI
Sbjct: 30 DLLVEFEFRT--TRPTGVLLGISSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPG 87
Query: 88 PRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFT 146
+ + WH V +I+ + L VD + + + +F+GG G
Sbjct: 88 ----HMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLN 143
Query: 147 ELFLGHIEWLRGCL 160
+ L RGC+
Sbjct: 144 QFGLTTNIRFRGCI 157
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 34 ELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAG------DTEIST 87
+L++ F + T+ + +L +S+ K+D + + +L H++ GAG D EI
Sbjct: 233 DLLVEFEFRT--TRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPG 290
Query: 88 PRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFT 146
+ + WH V +I+ + L VD + + + +F+GG G
Sbjct: 291 ----HMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLN 346
Query: 147 ELFLGHIEWLRGCL 160
+ L RGC+
Sbjct: 347 QFGLTTNIRFRGCI 360
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 94 DDLLWHSVNVTRIEANVTLTV-DLIHTTFEKLPGKFFELN 132
D ++WH V + + A + L+ T+FE P FFE N
Sbjct: 592 DIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERN 631
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 94 DDLLWHSVNVTRIEANVTLTV-DLIHTTFEKLPGKFFELN 132
D ++WH V + + A + L+ T+FE P FFE N
Sbjct: 587 DIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERN 626
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIG--GQGDFTEL 148
+R+ D W V + A TLT +LIH+ + G+ + G+ +G GQ ++
Sbjct: 118 VRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGV-VGNPGQTNYCAA 176
Query: 149 FLGHIEWLRGCLSDVIYNNI 168
G I + + ++ NI
Sbjct: 177 KAGLIGFSKALAQEIASRNI 196
>pdb|1F5F|A Chain A, Crystal Structure Of The N-Terminal G-Domain Of Shbg In
Complex With Zinc
Length = 205
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
K D+ +L L GR ++ ++ + G RLDD WH V V +V L VD
Sbjct: 63 KDDWFMLGLRDGRPEIQLHNHWAQLTVGA--GPRLDDGRWHQVEVKMEGDSVLLEVD 117
>pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Laminin G-Like Domain
Of Shbg In Complex With Dihydrotestosterone
Length = 170
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
K D+ +L L GR ++ ++ +++ G RLDD WH V V +V L VD
Sbjct: 51 KDDWFMLGLRDGRPEIQLHNHW--AQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVD 105
>pdb|1KDK|A Chain A, The Structure Of The N-Terminal Lg Domain Of Shbg In
Crystals Soaked With Edta
pdb|1KDM|A Chain A, The Crystal Structure Of The Human Sex Hormone-Binding
Globulin (Tetragonal Crystal Form)
Length = 177
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
K D+ +L L GR ++ ++ + G RLDD WH V V +V L VD
Sbjct: 52 KDDWFMLGLRDGRPEIQLHNHWAQLTVGA--GPRLDDGRWHQVEVKMEGDSVLLEVD 106
>pdb|1LHN|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 5alpha-Androstane-3beta,17alpha-Diol
pdb|1LHO|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With 5alpha-androstane-3beta,17beta-diol
pdb|1LHU|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With Estradiol
pdb|1LHV|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With Norgestrel
pdb|1LHW|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 2-Methoxyestradiol
Length = 189
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 59 KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVD 115
K D+ +L L GR ++ ++ + G RLDD WH V V +V L VD
Sbjct: 63 KDDWFMLGLRDGRPEIQLHNHWAQLTVGA--GPRLDDGRWHQVEVKMEGDSVLLEVD 117
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 58 GKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLI 117
GK D+ L L + L+ +LG G I + + L W V + R L V
Sbjct: 60 GKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGT--WVRVFLERNGRKGALQVGDG 117
Query: 118 HTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLG 151
+ P LN+ L++GG DF++L G
Sbjct: 118 PRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARG 151
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 27.3 bits (59), Expect = 5.7, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 41 FTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGD-TEISTPRGLRLDD 95
T+P T R AIL L AG D ++ + + H+ GAGD + R L L+D
Sbjct: 400 LTTPGTTRPLAILDLGAGSTDASIINPKGDIIATHL-AGAGDMVTMIIARELGLED 454
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,299,206
Number of Sequences: 62578
Number of extensions: 207859
Number of successful extensions: 383
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 52
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)