RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6627
(195 letters)
>gnl|CDD|214598 smart00282, LamG, Laminin G domain.
Length = 132
Score = 85.1 bits (211), Expect = 2e-21
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 37 ISLLFTSPLTKRSDAILF--LSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
IS F T + +L S G DY L L GRL + +LG+G +++ L+
Sbjct: 2 ISFSFR---TTSPNGLLLYAGSKGGGDYLALELRDGRLVLRYDLGSGPARLTSDPT-PLN 57
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHI- 153
D WH V V R +VTL+VD + + PG LN+ L++GG + +L +
Sbjct: 58 DGQWHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGPLYLGGLPEDLKLPPLPVT 117
Query: 154 EWLRGCLSDVIYNN 167
RGC+ ++ N
Sbjct: 118 PGFRGCIRNLKVNG 131
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain. This family includes the
Thrombospondin N-terminal-like domain, a Laminin G
subfamily.
Length = 124
Score = 76.7 bits (189), Expect = 2e-18
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 46 TKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNV 103
T + + +L + G+ +D+ L LE GRL + +LG+G + + G +L+D WH V+V
Sbjct: 3 TTQPNGLLLYAGGEDGLDFLALELEDGRLVLRYDLGSGGSVLLLS-GKKLNDGQWHRVSV 61
Query: 104 TRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTEL-FLGHIEWLRGCLSD 162
+R ++TL+VD E LPG LN++ L++GG + + L L E GC+ +
Sbjct: 62 SRDGRSLTLSVDGGTVVSEALPGSSSILNLNGPLYLGGLPEDSGLSLLPVTEGFVGCIRN 121
Query: 163 VIY 165
V
Sbjct: 122 VRV 124
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually
Ca++ mediated receptors that can have binding sites for
steroids, beta1 integrins, heparin, sulfatides,
fibulin-1, and alpha-dystroglycans. Proteins that
contain LamG domains serve a variety of purposes
including signal transduction via cell-surface steroid
receptors, adhesion, migration and differentiation
through mediation of cell adhesion molecules.
Length = 151
Score = 74.4 bits (183), Expect = 3e-17
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 37 ISLLFTSPLTKRSDAILFL--SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
IS F T + +L S D+ L LE GRL + +LG+G +S+ L+
Sbjct: 24 ISFSFR---TTSPNGLLLYAGSQNGGDFLALELEDGRLVLRYDLGSGSLVLSSKT--PLN 78
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELFLGHI 153
D WHSV+V R +VTL+VD PG LN+ L++GG D L
Sbjct: 79 DGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLPEDLKSPGLPVS 138
Query: 154 EWLRGCLSDVIYN 166
GC+ D+ N
Sbjct: 139 PGFVGCIRDLKVN 151
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain.
Length = 131
Score = 65.8 bits (161), Expect = 4e-14
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 46 TKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNV 103
T +L + + D+ L L GRL+V +LG+G G +L+D WHSV +
Sbjct: 3 TTEPSGLLLYNGTQTERDFLALELRDGRLEVSYDLGSG--AAVVRSGDKLNDGKWHSVEL 60
Query: 104 TRIEANVTLTVDLIHT-TFEKLPGKFFELNIHYGLFIGGQGDFTE--LFLGHIEWLRGCL 160
R + TL+VD T E G +L++ L++GG L GC+
Sbjct: 61 ERNGRSGTLSVDGEARVTGESPLGATTDLDVDGPLYVGGLPSLAVKLRRLAISPSFDGCI 120
Query: 161 SDVIYNN 167
DVI N
Sbjct: 121 RDVIVNG 127
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 32.1 bits (73), Expect = 0.16
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 119 TTFEKLPGKFFELNIHYG 136
T F+K PGKF+ L+I YG
Sbjct: 600 TNFQKQPGKFYPLDIDYG 617
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 29.3 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLF 138
LRL+ LL H + V++ +A + +D + T P ++N LF
Sbjct: 62 LRLESLL-HCITVSKAKALIFNLLDPLLTQSSTEPPSQDDVNFRDKLF 108
>gnl|CDD|214560 smart00210, TSPN, Thrombospondin N-terminal -like domains.
Heparin-binding and cell adhesion domain of
thrombospondin.
Length = 184
Score = 27.7 bits (62), Expect = 3.1
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 37 ISLLFTSPLTKRSDAILF--LSAGKIDYCLLRLESGRLKVHI--NLGA-GDTEISTPRGL 91
SLL T T +S +LF A + L + GR + G G + R L
Sbjct: 54 FSLLTTFRQTPKSRGVLFAIYDAQNVRQFGLEV-DGRANTLLLRYQGVDGKQHTVSFRNL 112
Query: 92 RLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFI-GGQGDFTELFL 150
L D WH + ++ ++ TL VD L G+ + G Q + F
Sbjct: 113 PLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPPIDTDGIEVRGAQAADRKPFQ 172
Query: 151 GHIEWLR 157
G ++ L+
Sbjct: 173 GDLQQLK 179
>gnl|CDD|153428 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase
1 and similar proteins. The WGR domain is found in a
variety of eukaryotic poly(ADP-ribose) polymerases
(PARPs). It has been called WGR after the most conserved
central motif of the domain. The domain typically occurs
together with a catalytic PARP domain, and is between 70
and 80 residues in length. It has been proposed to
function as a nucleic acid binding domain. PARPs
catalyze the NAD(+)-dependent synthesis of ADP-ribose
polymers and their addition to various nuclear proteins.
Higher eukaryotes contain several PARPs and and there
may be up to 17 human PARP-like proteins, with three of
them (PARP-1, PARP-2, and PARP-3) containing a WGR
domain. The synthesis of poly-ADP-ribose requires
multiple enzymatic activities for initiation,
trans-ADP-ribosylation, elongation, branching, and
release of the polymer from the enzyme. This subfamily
is composed of vertebrate PARP-1 and similar proteins,
including Arabidopsis thaliana PARP-1 and PARP-3. PARP-1
is the best-studied among the PARPs. It is a widely
expressed nuclear chromatin-associated enzyme that
possesses auto-mono-ADP-ribosylation (initiation),
elongation, and branching activities. PARP-1 is
implicated in DNA damage and cell death pathways and is
important in maintaining genomic stability and
regulating cell proliferation, differentiation, neuronal
function, inflammation, and aging.
Length = 104
Score = 26.8 bits (60), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 121 FEKLPGKFFELNIHY 135
F+K PGKF+ L+I Y
Sbjct: 90 FKKKPGKFYPLDIDY 104
>gnl|CDD|178752 PLN03213, PLN03213, repressor of silencing 3; Provisional.
Length = 759
Score = 27.5 bits (60), Expect = 4.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 87 TPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEK 123
TPR + L DL ++NV R EA V + +++ FEK
Sbjct: 170 TPREIHLHDL--EALNVGRNEAEVNVMNSVMNKLFEK 204
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,878,428
Number of extensions: 923292
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 15
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)