RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6627
(195 letters)
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 114 bits (288), Expect = 1e-32
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEIST-PRGL 91
I+L F T + + ++ + DY L L++G + + INLG+G E P
Sbjct: 28 SSDEITLSFK---TLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNG 84
Query: 92 RLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELF-L 150
+ +D WH V VTR VT++VD I TT + L ++GG +L
Sbjct: 85 KFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS 144
Query: 151 GHIEWLRGCLSDVIYNN----IDTLKRARARSSQADAQG 185
GCL +V+Y N ++ + A+ + G
Sbjct: 145 PVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHG 183
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 111 bits (279), Expect = 1e-29
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
K L + L T S +++ A + +DY L+L+ GRL +LG G T++S P
Sbjct: 43 KRLQVQLSI---RTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPA- 98
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFL 150
L D WH+V I+ +TVD + + GK L++ L++GG
Sbjct: 99 -LLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARN 157
Query: 151 GHIEW--LRGCLSDVIYNNIDTLKRARARSS 179
+ C+ +++ N K +S
Sbjct: 158 IGTITHSIPACIGEIMVNGQQLDKDRPLSAS 188
Score = 84.3 bits (208), Expect = 1e-19
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 10/154 (6%)
Query: 34 ELMISLLFTSPLTKRSDAILF-LSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPR--G 90
+L I+L F T + +L +S+ K+D L + G++ H+N GAG +
Sbjct: 221 DLQITLEFR---TTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAA 277
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELF 149
L D WH++ + + + LTVD E + + +++GG +
Sbjct: 278 RALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPAHIKQNS 337
Query: 150 LGHIEWLRGCLSDVIYNN---IDTLKRARARSSQ 180
L RGC+ ++ + + +L +RA Q
Sbjct: 338 LSSRASFRGCVRNLRLSRGSQVQSLDLSRAFDLQ 371
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 105 bits (264), Expect = 3e-29
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 16/154 (10%)
Query: 37 ISLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRL 93
+++ F+ T + +A+L S+G DY L + G++ V N+G D I +
Sbjct: 33 LAIGFS---TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES-NAII 88
Query: 94 DDLLWHSVNVTRIEANVTLTVDLIHTTFEKL-PGKFFELNIHYGLFIGGQGDFTELFLGH 152
+D +H V TR N TL VD + N + IGG+
Sbjct: 89 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQP----- 143
Query: 153 IEWLRGCLSDVIYNNIDTLKRARARSSQADAQGK 186
+G LS + YN + L A + G
Sbjct: 144 ---FQGQLSGLYYNGLKVLNMAAENDANIAIVGN 174
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 105 bits (264), Expect = 9e-29
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 16/153 (10%)
Query: 37 ISLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRL 93
+++ F+ T + +A+L S+G DY L + G++ V N+G D I +
Sbjct: 67 LAIGFS---TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES-NAII 122
Query: 94 DDLLWHSVNVTRIEANVTLTVD-LIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGH 152
+D +H V TR N TL VD + N + IGG+
Sbjct: 123 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQP----- 177
Query: 153 IEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
+G LS + YN + L A + G
Sbjct: 178 ---FQGQLSGLYYNGLKVLNMAAENDANIAIVG 207
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 102 bits (255), Expect = 7e-28
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 13/158 (8%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
+SL F ++R+ IL + + D L L++GR+K+ +NLG G + L+
Sbjct: 31 VSLRF---RSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGY--NLN 85
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIE 154
D WH+V V R ++ LTVD ++ G L H + G + L
Sbjct: 86 DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH-NIETGIITERRYL-SSVPS 143
Query: 155 WLRGCLSDVIYNN---IDTLKRARARSSQADAQ-GKRN 188
G L + +N ID K + +A+ G RN
Sbjct: 144 NFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRN 181
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 99.2 bits (247), Expect = 2e-26
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 11/154 (7%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSA----GKIDYCLLRLESGRLKVHINLGAGDTEISTP 88
+++ + ++F L + +L + GK D+ L L + L+ +LG G I +
Sbjct: 34 EKMALEMVF---LARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSK 90
Query: 89 RGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTEL 148
+ W V + R L V + P LN+ L++GG DF++L
Sbjct: 91 E--PIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKL 148
Query: 149 --FLGHIEWLRGCLSDVIYNNIDTLKRARARSSQ 180
G + V L + +
Sbjct: 149 ARGAAVASGFDGAIQLVSLRGHQLLTQEHVLRAV 182
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 103 bits (257), Expect = 5e-26
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 30 LYHKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTE-ISTP 88
+ I+L F T + + ++ + DY L L++G + + INLG+G E + P
Sbjct: 251 IQSSSDEITLSF---KTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEP 307
Query: 89 RGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTEL 148
+ +D WH V VTR VT++VD I TT + L ++GG +L
Sbjct: 308 VNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL 367
Query: 149 FLGHI-EWLRGCLSDVIYNNID 169
+ GCL +V+Y N D
Sbjct: 368 PGSPVSNNFMGCLKEVVYKNND 389
Score = 93.0 bits (230), Expect = 2e-22
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 32 HKELMISLLFTSPLTKRSDAILFLSA--GKIDYCLLRL-ESGRLKVHINLGAGDTEISTP 88
E +S T+ + ++ G D+ L L GRL++ ++ +
Sbjct: 19 CCESEMSFQL---KTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLT 75
Query: 89 RGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTEL 148
++D WH+V + R N TL +D + + ++ K ++ + GLF+GG
Sbjct: 76 -DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRA 134
Query: 149 FLGHIEW--------LRGCLSDVIYNN 167
+ +G + DV +
Sbjct: 135 AALKLTLASVREREPFKGWIRDVRVQS 161
Score = 89.5 bits (221), Expect = 3e-21
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 37 ISLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRL 93
+++ F+ T + +A+L S+G DY L + G++ V N+G D I +
Sbjct: 1085 LAIGFS---TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES-NAII 1140
Query: 94 DDLLWHSVNVTRIEANVTLTVD-LIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGH 152
+D +H V TR N TL VD + N + IGG+ + F
Sbjct: 1141 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-GQPF--- 1196
Query: 153 IEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
+G LS + YN + L A + G
Sbjct: 1197 ----QGQLSGLYYNGLKVLNMAAENDANIAIVG 1225
Score = 82.2 bits (202), Expect = 1e-18
Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 39 LLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLW 98
+LF+ + K+D+ + + G L + +++G+G +I +++D W
Sbjct: 459 ILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKAL-QKKVNDGEW 517
Query: 99 HSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELFLGHIEW-- 155
+ V+ R + T++V+ + T + PG+ L++ L++GG + L W
Sbjct: 518 YHVDFQRDGRSGTISVNTLRTPY-TAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTA 576
Query: 156 -----LRGCLSDVIYNN--IDTLKRARARSS 179
GC+ D+ + D + A +S+
Sbjct: 577 LLNYGYVGCIRDLFIDGQSKDIRQMAEVQST 607
Score = 72.2 bits (176), Expect = 4e-15
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 11/156 (7%)
Query: 32 HKELMISLLFTSPLTKRSDAILFLSAG-KIDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
+ + + F T D ++ ++G D+ ++ L G L +LG G I
Sbjct: 857 YTSMHLFFQFK---TTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN 913
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFL 150
L+D WH+V ++R +N+ T + + L++ L+IGG T L
Sbjct: 914 KPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ-ITAGARNLDLKSDLYIGGVAKETYKSL 972
Query: 151 GHIEWLR----GCLSDVIYNN--IDTLKRARARSSQ 180
+ + GCL+ V N D + A + Q
Sbjct: 973 PKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQ 1008
Score = 71.4 bits (174), Expect = 6e-15
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
+SL F ++R+ IL + + D L L++GR+K+ +NLG G + L+
Sbjct: 684 VSLRFR---SQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGY--NLN 738
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGHIE 154
D WH+V V R ++ LTVD ++ G L H
Sbjct: 739 DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITER--RYLSSVPS 796
Query: 155 WLRGCLSDVIYNNID 169
G L + +N +
Sbjct: 797 NFIGHLQSLTFNGMA 811
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 101 bits (252), Expect = 1e-25
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSA--GKIDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
L I L T+ +LF A D+ ++L +G +LG+GDT P
Sbjct: 57 NRLTIELEV---RTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPT- 112
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELF 149
+++D WH + + R++ L VD ++ P K L++ L++GG ++T
Sbjct: 113 -KINDGQWHKIKIVRVKQEGILYVD-DASSQTISPKKADILDVVGILYVGGLPINYTTRR 170
Query: 150 LGHIEW-LRGCLSDVIYNNID 169
+G + + L GC+ ++
Sbjct: 171 IGPVTYSLDGCVRNLHMEQAP 191
Score = 82.4 bits (203), Expect = 7e-19
Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 7/157 (4%)
Query: 33 KELMISLLFTSPLTKRSDAILF-LSAGKIDYCLLRLESGRLKVHINLGAGDTEI--STPR 89
+L++ F T R +L +S+ K+D + + +L H++ GAG
Sbjct: 232 LDLLVEFEFR---TTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEI 288
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTEL 148
+ + WH V +I+ + L VD + + + +F+GG G +
Sbjct: 289 PGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLNQF 348
Query: 149 FLGHIEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
L RGC+ + + + +G
Sbjct: 349 GLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRG 385
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 94.2 bits (234), Expect = 1e-24
Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 14/161 (8%)
Query: 37 ISLLFTSPLTKRSDAILF-------LSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPR 89
I L T + +L + D+ L L+ G L LG+G+ + +
Sbjct: 34 IELEVR---TSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSED 90
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELF 149
++D WH V R ++ VD + PG +N ++IGG D L
Sbjct: 91 --PINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLT 148
Query: 150 LGHI-EWLRGCLSDVIYNNID-TLKRARARSSQADAQGKRN 188
G + GC+ +++ ++ + Q AQ N
Sbjct: 149 GGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 189
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 94.1 bits (234), Expect = 1e-24
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 13/155 (8%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSA---GKIDYCLLRLESGRLKVHINLGAGDTEISTPR 89
+ L T+ + ++ + DY L + G L++ +LG+ + +
Sbjct: 35 QSNHFELSLR---TEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVVLRSTV 91
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELF 149
+++ W + R +L V P +L+ L++GG
Sbjct: 92 --KVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQ 149
Query: 150 LGHIEW---LRGCLSDVIYNN--IDTLKRARARSS 179
+ GCL DV+ + + L+ A +
Sbjct: 150 ALPKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPE 184
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 97.2 bits (241), Expect = 4e-24
Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 11/154 (7%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
L+ F T + IL + G + +L L +GRL++ + S+ G
Sbjct: 61 TRLVAEFDF---RTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSS--G 115
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNI---HYGLFIGG-QGDFT 146
++ +W +++V + N+ + V+ + G F+ H L +GG
Sbjct: 116 PVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEK 175
Query: 147 ELFLGHIEWLRGCLSDVIYNNIDTLKRARARSSQ 180
+L L GC+ + N +
Sbjct: 176 DLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVN 209
Score = 51.7 bits (123), Expect = 3e-08
Identities = 25/162 (15%), Positives = 45/162 (27%), Gaps = 16/162 (9%)
Query: 32 HKELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDTEISTPR-- 89
E+ + + + L A + L + L ++
Sbjct: 248 TWEVEVVAHIRP--AADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTA 305
Query: 90 ----GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKF--------FELNIHYGL 137
+++ D H V V+ + TL VD E + L
Sbjct: 306 LALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLT 365
Query: 138 FIGGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKRARARSS 179
F GG D + RGC++ + + L A + S
Sbjct: 366 FAGGLPDVPVTSAPVTAFYRGCMTLEVNRRLLDLDEAAYKHS 407
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 91.1 bits (226), Expect = 3e-23
Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 13/155 (8%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSA---GKIDYCLLRLESGRLKVHINLGAGDTEISTPR 89
+ L T+ + ++ S + DY L + G +++ +LG+ + +
Sbjct: 48 QSNHFELSIK---TEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTV 104
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELF 149
++ W + R++ +L V P +L+ L++GG +
Sbjct: 105 --PINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAH 162
Query: 150 LGHIEW---LRGCLSDVIYNN--IDTLKRARARSS 179
+ GC+ DVI + + ++ A +
Sbjct: 163 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPT 197
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 93.5 bits (232), Expect = 7e-23
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 11/167 (6%)
Query: 32 HKELMISLLFTSPLTKRSDAILFLSAGKI-DYCLLRLESGRLKVHINLGAGDTEISTPRG 90
+ + + F T D ++ ++G D+ ++ L G L +LG G I
Sbjct: 25 YTSMHLFFQF---KTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN 81
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFL 150
L+D WH+V ++R +N+ T + + L++ L+IGG T L
Sbjct: 82 KPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ-ITAGARNLDLKSDLYIGGVAKETYKSL 140
Query: 151 GHIEW----LRGCLSDVIYNN--IDTLKRARARSSQADAQGKRNRTS 191
+ +GCL+ V N D + A + Q + + T+
Sbjct: 141 PKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTT 187
Score = 88.5 bits (219), Expect = 4e-21
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 37 ISLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRL 93
+++ F+ T + +A+L S+G DY L + G++ V N+G D I +
Sbjct: 253 LAIGFS---TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES-NAII 308
Query: 94 DDLLWHSVNVTRIEANVTLTVD-LIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLGH 152
+D +H V TR N TL VD + N + IGG+ + F
Sbjct: 309 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-GQPF--- 364
Query: 153 IEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
+G LS + YN + L A + G
Sbjct: 365 ----QGQLSGLYYNGLKVLNMAAENDANIAIVG 393
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 89.0 bits (220), Expect = 2e-22
Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 30/179 (16%)
Query: 33 KELMISLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPR 89
+ +++ F+ T + +A+L S+G DY L + G++ V N+G D I
Sbjct: 35 RADRLAIGFS---TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES- 90
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKF-------------FELNIHYG 136
++D +H V TR N TL VD G + L
Sbjct: 91 NAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVD 150
Query: 137 LFIGGQGDFTELF-------LGHIEWLR---GCLSDVIYNNIDTLKRARARSSQADAQG 185
++ +G +F +G E + G LS + YN + L A + G
Sbjct: 151 EWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVG 209
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 91.7 bits (227), Expect = 6e-22
Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 18/147 (12%)
Query: 37 ISLLFTSPLTKRSDAILFL--SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
I + T +D +LF SA ID+ + + G++ ++G+G + P L +D
Sbjct: 35 IVVHVK---TAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYP-DLTID 90
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPG-----------KFFELNIHYGLFIGG-Q 142
D W+ + +R N +++V + + +++ + LF+GG
Sbjct: 91 DSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLT 150
Query: 143 GDFTELFLGHIEWLRGCLSDVIYNNID 169
G + + GC+ + ++N
Sbjct: 151 GKIKKADAVRVITFTGCMGETYFDNKP 177
Score = 90.1 bits (223), Expect = 2e-21
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 37 ISLLFTSPLTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
+ F T S A+L A + D+ + L G +KV +LG+G T + + +
Sbjct: 229 VMFKFR---TFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVS--NQNHN 283
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEK-----LPGKFFELNIH--YGLFIGGQGDFTE 147
D W + ++RI+ +++ I + E+ G F L++ ++ GG
Sbjct: 284 DGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRN 343
Query: 148 LFLG-HIEWLRGCLSDVIYNNID 169
L +++ GCL D+ +
Sbjct: 344 LRPEVNVKKYSGCLKDIEISRTP 366
Score = 73.2 bits (179), Expect = 1e-15
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 32 HKELMISLLFTSPLTKRSDAILFLSAGK-IDYCLLRLESGRLKVHINLGAGDTE--ISTP 88
I+L F+ T+ I+ L +G Y + L GRL+VH++ G + P
Sbjct: 406 DVGTEINLSFS---TRNESGIILLGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKP 462
Query: 89 RGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTE 147
R D HSV+V R T+ +D + L + LF+GG +F
Sbjct: 463 EPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEEQPIEV--KKLFVGGAPPEFQP 520
Query: 148 LFLGHIEWLRGCLSDVIYNN 167
L +I +GC+ +++ N+
Sbjct: 521 SPLRNIPAFQGCVWNLVINS 540
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 79.9 bits (197), Expect = 2e-19
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 12/150 (8%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSAGK--IDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
+ S T + ++F D+ +L L GR ++ ++ +
Sbjct: 26 TKTSSSFEV---RTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP- 81
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELF 149
RLDD WH V V +V L VD + + + +GG + L
Sbjct: 82 -RLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMR----IALGGLLFPASNLR 136
Query: 150 LGHIEWLRGCLSDVIYNNIDTLKRARARSS 179
L + L GCL + + A A +S
Sbjct: 137 LPLVPALDGCLRRDSWLDKQAEISASAPTS 166
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 80.7 bits (199), Expect = 3e-19
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 10/152 (6%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSAG--KIDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
+ S T + ++F K D+ +L L GR ++ ++ +
Sbjct: 38 TKTSSSFEV---RTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP- 93
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKL--PGKFFELNIHYGLFIGG-QGDFTE 147
RLDD WH V V +V L VD + + + + +GG +
Sbjct: 94 -RLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASN 152
Query: 148 LFLGHIEWLRGCLSDVIYNNIDTLKRARARSS 179
L L + L GCL + + A A +S
Sbjct: 153 LRLPLVPALDGCLRRDSWLDKQAEISASAPTS 184
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 40.1 bits (93), Expect = 2e-04
Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 12/160 (7%)
Query: 7 RVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILF-LSAGKIDYCLL 65
R++D L + A+ K LL + K++ L L +
Sbjct: 36 RIEDANLIPPVPDDKFQDLVDAVRTEKGF--LLLASLRQMKKTRGTLLALERKDHSGQVF 93
Query: 66 RLESGRLKVHINL---GAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFE 122
+ S ++L G + + L W S+ + E L +D
Sbjct: 94 SVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENA 153
Query: 123 KLPGKFF-----ELNIHYGLFIGGQGDFTELFLGHIEWLR 157
+L +L L I +G + F G ++ +R
Sbjct: 154 ELDVPIQSVFTRDLASIARLRI-AKGGVNDNFQGVLQNVR 192
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 39.4 bits (91), Expect = 3e-04
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 12/160 (7%)
Query: 7 RVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSPLTKRSDAILF---LSAGKIDYC 63
R++D L + A+ K LL + K++ L
Sbjct: 46 RIEDANLIPPVPDDKFQDLVDAVRTEKGF--LLLASLRQMKKTRGTLLALERKDHSGQVF 103
Query: 64 LLRLESGRLKVHINL-GAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFE 122
+ + ++L G + + L W S+ + E L +D
Sbjct: 104 SVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENA 163
Query: 123 KLPGKF-----FELNIHYGLFIGGQGDFTELFLGHIEWLR 157
+L +L L I +G + F G ++ +R
Sbjct: 164 ELDVPIQSVFTRDLASIARLRI-AKGGVNDNFQGVLQNVR 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 9e-04
Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 59/205 (28%)
Query: 7 RVKDEALSNAATPTFHKSCEKALLYHKELMISLL-FTSPLTKRSDAILFLSAGKIDYCLL 65
+++++ PT + + EL+ L + S L + S G+ D L
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS------KVGQFDQVLN 85
Query: 66 RLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTV----DLIHTTF 121
L + L +D+ H++ ++ T+ +LI
Sbjct: 86 LC----------LTEFENCY-----LEGNDI--HAL-AAKLLQENDTTLVKTKELIKNYI 127
Query: 122 E-----------KLPGKFFE------LNIHYGLFIGGQGDFTELFLGHIEWLR------- 157
K F + +F GGQG+ + F E LR
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIF-GGQGNTDDYF----EELRDLYQTYH 181
Query: 158 GCLSDVIYNNIDTLKRARARSSQAD 182
+ D+I + +TL + A+
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAE 206
Score = 31.2 bits (70), Expect = 0.21
Identities = 32/218 (14%), Positives = 62/218 (28%), Gaps = 67/218 (30%)
Query: 4 RKLRVKDEALSNAATPTFHKSCEKALLYHKELMISLLFTSP-----LTKRSD-AILFLSA 57
+++R A+ EK E S F S T+ + A+ +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME- 1740
Query: 58 GKIDYCLLRL--ESGRLKV------HINLG--------AG-----DT-EISTPRGLRLDD 95
G + H +LG A E+ RG+ +
Sbjct: 1741 ----KAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 96 LLWH-----------SVNVTRIEANVTLTVDLIHTTFEKL---PGKFFE---LNIHYGLF 138
+ ++N R+ A + + + + E++ G E N+
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAA--SFSQEALQYVVERVGKRTGWLVEIVNYNVE---- 1849
Query: 139 IGGQ----GDFTELFLGHIEWLRGCLSDVIYNNIDTLK 172
Q GD L + + L+ + ID ++
Sbjct: 1850 -NQQYVAAGDLRAL-----DTVTNVLNFIKLQKIDIIE 1881
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural
protein, NC4, collagen IX, polymorphism, extracellular
matrix; 1.8A {Homo sapiens}
Length = 245
Score = 30.6 bits (68), Expect = 0.30
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 10/129 (7%)
Query: 38 SLLFT---SPLTKRSDAILF--LSAGKIDYCLLRLESGRLKVHINLGAGDTEIST---PR 89
S L T + T + + ++ + + +++ V + D + T
Sbjct: 89 SFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSN 148
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQG-DFTEL 148
L D WH + + ++ TL VD + + ++I +G +
Sbjct: 149 LSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPR-GPIDIDGFAVLGKLADNPQVS 207
Query: 149 FLGHIEWLR 157
++W+
Sbjct: 208 VPFELQWML 216
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 26.4 bits (58), Expect = 6.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 41 FTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGDT 83
T+P AIL L AG D ++ E VH+ GAG+
Sbjct: 402 LTTPGCAAPLAILDLGAGSTDAAIVNAEGQITAVHLA-GAGNM 443
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,917,578
Number of extensions: 169107
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 34
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)