RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6627
(195 letters)
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 78.7 bits (193), Expect = 4e-19
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 7/157 (4%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSAGK-IDYCLLRLESGRLKVHINLGAGDTEISTPR-- 89
+L++ F T R +L + + +D + + +L H++ GAG
Sbjct: 24 LDLLVEFEFR---TTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEI 80
Query: 90 GLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTEL 148
+ + WH V +I+ + L VD + + + +F+GG G +
Sbjct: 81 PGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLNQF 140
Query: 149 FLGHIEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
L RGC+ + + + +G
Sbjct: 141 GLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRG 177
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 68.0 bits (165), Expect = 5e-15
Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 37 ISLLFTSPLTKRSDAILFLSA---GKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRL 93
L T+ + ++ S + DY L + G +++ +LG+ + + +
Sbjct: 46 FELSIK---TEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTV--PI 100
Query: 94 DDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDF---TELFL 150
+ W + R++ +L V P +L+ L++GG +L
Sbjct: 101 NTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPK 160
Query: 151 GHIEWLRGCLSDVIYNN--IDTLKRARARSS 179
+ GC+ DVI + + ++ A +
Sbjct: 161 AYSTGFIGCIRDVIVDRQELHLVEDALNNPT 191
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 64.8 bits (157), Expect = 5e-14
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 16/153 (10%)
Query: 37 ISLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRL 93
+++ F+ T + +A+L S+G DY L + G++ V N+G D I +
Sbjct: 32 LAIGFS---TVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEES-NAII 87
Query: 94 DDLLWHSVNVTRIEANVTLTVDLIHTTFEKL-PGKFFELNIHYGLFIGGQGDFTELFLGH 152
+D +H V TR N TL VD + N + IGG+ + + F
Sbjct: 88 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGK-EQGQPF--- 143
Query: 153 IEWLRGCLSDVIYNNIDTLKRARARSSQADAQG 185
+G LS + YN + L A + G
Sbjct: 144 ----QGQLSGLYYNGLKVLNMAAENDANIAIVG 172
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 64.4 bits (156), Expect = 6e-14
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 12/146 (8%)
Query: 37 ISLLFTSPLTKRSDAILFL--SAGKIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLD 94
S T + ++F + K D+ +L L GR ++ ++ + RLD
Sbjct: 30 SSFEVR---TWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP--RLD 84
Query: 95 DLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELFLGHI 153
D WH V V +V L VD + + + +GG + L L +
Sbjct: 85 DGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMR----IALGGLLFPASNLRLPLV 140
Query: 154 EWLRGCLSDVIYNNIDTLKRARARSS 179
L GCL + + A A +S
Sbjct: 141 PALDGCLRRDSWLDKQAEISASAPTS 166
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 61.8 bits (149), Expect = 8e-13
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 46 TKRSDAILFLSAG--KIDYCLLRLESGRLKVHINLGAGDTEISTPRGLRLDDLLWHSVNV 103
T + IL + G + +L L +GRL++ + S+ ++ +W +++V
Sbjct: 67 TFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP--VINHGMWQTISV 124
Query: 104 TRIEANVTLTVDLIHTTFEKLPGKFFE---LNIHYGLFIGG-QGDFTELFLGHIEWLRGC 159
+ N+ + V+ + G F+ H L +GG +L L GC
Sbjct: 125 EELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGC 184
Query: 160 LSDVIY 165
+ +
Sbjct: 185 MRSWNW 190
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 61.8 bits (149), Expect = 9e-13
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 33 KELMISLLFTSPLTKRSDAILFLSA--GKIDYCLLRLESGRLKVHINLGAGDTEISTPRG 90
L I L T+ +LF A D+ ++L +G +LG+GDT P
Sbjct: 38 NRLTIELEVR---TEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPT- 93
Query: 91 LRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGG-QGDFTELF 149
+++D WH + + R++ L VD + P K L++ L++GG ++T
Sbjct: 94 -KINDGQWHKIKIVRVKQEGILYVDDASSQTI-SPKKADILDVVGILYVGGLPINYTTRR 151
Query: 150 LGHIEW-LRGCLSDVIYNN 167
+G + + L GC+ ++
Sbjct: 152 IGPVTYSLDGCVRNLHMEQ 170
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 54.2 bits (129), Expect = 8e-10
Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 16/160 (10%)
Query: 34 ELMISLLFTSPLTKRSDAILFLSAGKIDYCLLRLESGRLKVHINLGAGD------TEIST 87
E+ + + + L A + L + L
Sbjct: 46 EVEVVAHI--RPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALA 103
Query: 88 PRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFE--------KLPGKFFELNIHYGLFI 139
+++ D H V V+ + TL VD E +L L F
Sbjct: 104 LMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFA 163
Query: 140 GGQGDFTELFLGHIEWLRGCLSDVIYNNIDTLKRARARSS 179
GG D + RGC++ + + L A + S
Sbjct: 164 GGLPDVPVTSAPVTAFYRGCMTLEVNRRLLDLDEAAYKHS 203
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 41.6 bits (97), Expect = 2e-05
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 12/142 (8%)
Query: 38 SLLFTSPLTKRSDAILFL---SAGKIDYCLLRLESGRLKVHINLGAGDTE-ISTPRGLRL 93
LL + K++ L + + ++L + + + L
Sbjct: 62 LLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALL 121
Query: 94 DDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIG----GQGDFTELF 149
W S+ + E L +D +L + I +G + F
Sbjct: 122 ATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVNDNF 181
Query: 150 LGHIEWLR----GCLSDVIYNN 167
G ++ +R D++ N
Sbjct: 182 QGVLQNVRFVFGTTPEDILRNK 203
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 27.5 bits (61), Expect = 1.1
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 80 AGDTEISTPRGLRLDDLLWHSVNVTRIEANVTLTVDLIHTTFEKLPGKFFELNI 133
AG+ EI P L D + + +V + L + L L L++
Sbjct: 327 AGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSV 380
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 25.2 bits (54), Expect = 6.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 130 ELNIHYGLFIGGQ 142
E HY L+IGG+
Sbjct: 33 EFGRHYPLYIGGE 45
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria
meningitidis [TaxId: 487]}
Length = 173
Score = 24.6 bits (53), Expect = 8.3
Identities = 6/61 (9%), Positives = 14/61 (22%), Gaps = 6/61 (9%)
Query: 98 WHSVNVTR------IEANVTLTVDLIHTTFEKLPGKFFELNIHYGLFIGGQGDFTELFLG 151
W ++ + + L G+ E+ I + + G
Sbjct: 17 WERYDIDSDFLIPADSFDFVIGRLGPEAAIPDLSGESCEVVIDGQIVMTGIIGSQRHGKS 76
Query: 152 H 152
Sbjct: 77 K 77
>d2ae8a1 d.14.1.9 (A:1-84) Imidazole glycerol phosphate dehydratase
{Staphylococcus aureus [TaxId: 1280]}
Length = 84
Score = 23.6 bits (51), Expect = 8.9
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 73 KVHINLGAGDTEISTPRGL---RLDDLLWHSVNVTRIEANVTLTVDLIHTT 120
+ I+ + I+T G L +HS IEA + VD H T
Sbjct: 15 NISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVT 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 698,983
Number of extensions: 30689
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 15
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)