BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6628
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS + L H R G E+P +KC EC + F+ + L H +R H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTG---EKP-YKCP---ECGKSFSDKKDLTRH-QRTHT 73
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
EKPY+C +C KSF + + + H R HTGEKPYAC C
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS L+AH R G E+P + C EC + F+ L H +R H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTG---EKP-YACP---ECGKSFSQLAHLRAH-QRTHT 129
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
EKPY+C +C KSF + + H R HTGEKPY C C
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS L+AH R G E+P +KC EC + F+ + L+ H +R H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTG---EKP-YKCP---ECGKSFSREDNLHTH-QRTHT 157
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKPY+C +C KSF + +H R HTG+K
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 73 EKPYQCSQCSKSFFSKYDHKI-HSRVHTGEKPYACEFC 109
EKPY C +C KSF S+ DH H R HTGEKPY C C
Sbjct: 19 EKPYACPECGKSF-SRSDHLAEHQRTHTGEKPYKCPEC 55
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
E+P +KC EC + F+ + L H +R H EKPY+C +C KSF D + H R HT
Sbjct: 2 EKP-YKCP---ECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 100 GEKPYACEFC 109
GEKPY C C
Sbjct: 57 GEKPYKCPEC 66
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS + L+ H R G E+P +KC EC + F+ + L H +R H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTG---EKP-YKCP---ECGKSFSQSSDLQKH-QRTHT 56
Query: 72 KEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEK 102
EKPY+C +C KS FS+ DH H R H +K
Sbjct: 57 GEKPYKCPECGKS-FSRSDHLSRHQRTHQNKK 87
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
CDR F+ + L+ HI R H +KP+QC C ++F + H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS + L H+R G ++P F+C C R F+ + LN HI R
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTG---QKP-FQCR---ICMRNFSQQASLNAHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + + H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
CDR F+ + L+ HI R H +KP+QC C ++F H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS + L H+R G ++P F+C C R F+ LN HI R
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTG---QKP-FQCR---ICMRNFSQHTGLNQHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + + H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ + L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS + L H+R G ++P F+C C R F+ + L HI R
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTG---QKP-FQCRI---CMRNFSRSDHLTTHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + K H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ + L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 11 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 67
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS + L H+R G ++P F+C C R F+ + L HI R
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTG---QKP-FQCRI---CMRNFSRSDHLTTHI-RT 55
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVH 98
H EKP+ C C + F + K H+++H
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS L H+R G ++P F+C C R F+ + L HI R
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTG---QKP-FQCR---ICMRNFSRSDHLTTHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + K H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ + L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 8 HRVVFTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIH 65
H + C V C + FS + L H+R G ++P F+C C R F+ + L H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTG---QKP-FQCRI---CMRNFSRSDHLTTH 53
Query: 66 IKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVH 98
I R H EKP+ C C + F + K H+++H
Sbjct: 54 I-RTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 73 EKPYQC--SQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
E+PY C C + F + H R+HTG+KP+ C C
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 40
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ + L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS + L H+R G ++P F+C C R F+ + L HI R
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTG---QKP-FQCRI---CMRNFSRSDHLTTHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + K H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C+K + + L+ H R G E+P ++C+ + +C+R F+ + L H +R H KP+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTG---EKP-YQCDFK-DCERRFSRSDQLKRHQRR-HTGVKPF 67
Query: 77 QCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEF 108
QC C + F S+ DH K H+R HTGEKP++C +
Sbjct: 68 QCKTCQRKF-SRSDHLKTHTRTHTGEKPFSCRW 99
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 37 SSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIH 94
+SE+RP F C G C++ + + L +H R H EKPYQC C + F K H
Sbjct: 1 ASEKRP-FMCAYPG-CNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Query: 95 SRVHTGEKPYACEFC 109
R HTG KP+ C+ C
Sbjct: 58 QRRHTGVKPFQCKTC 72
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIH 65
F C+ C + FS + LK H R G E+P F C C + F + L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTG---EKP-FSCRW-PSCQKKFARSDELVRH 115
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS L H+R G ++P F+C C R F+ + L HI R
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTG---QKP-FQCRI---CMRNFSRSDHLTTHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + K H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
CDR F+ L HI R H +KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 12 CDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 68
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS L H+R G ++P F+C C R F+ + L HI R
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTG---QKP-FQCRI---CMRNFSRSDHLTTHI-RT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + K H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDR---VFTTRNMLNIHIKRDHQKE 73
CS+ F + L H+ ++H E R F C G C R F + ML +H++R H E
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGE-RKEFVCHW-GGCSRELRPFKAQYMLVVHMRR-HTGE 65
Query: 74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACE 107
KP++C+ C KS+ + K H R HTGEKPY CE
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 19 KIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQC 78
+ F + L H+R G E+P KC G C + ++ L H+ R H EKPY C
Sbjct: 47 RPFKAQYMLVVHMRRHTG---EKP-HKCTFEG-CRKSYSRLENLKTHL-RSHTGEKPYMC 100
Query: 79 SQ--CSKSFFSKYDHKIH-SRVHTGEKPYACEF 108
CSK+F + D H +R H+ EKPY C+
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 13 TCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQK 72
T + C K +S LK H+R+ G E+P + CE G C + F+ + H R H
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTG---EKP-YMCEHEG-CSKAFSNASDRAKHQNRTHSN 125
Query: 73 EKPYQC 78
EKPY C
Sbjct: 126 EKPYVC 131
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 52 CDRVFTTRNMLNIHIKRDH----QKEKPYQCSQCSKS---FFSKYDHKIHSRVHTGEKPY 104
C + F ++ L HI +H +KE CS+ F ++Y +H R HTGEKP+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 105 ACEF 108
C F
Sbjct: 69 KCTF 72
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDR---VFTTRNMLNIHIKRDHQKE 73
C + FS + L HV +H E+ C EC R F + L HI R H E
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE-ECPREGKSFKAKYKLVNHI-RVHTGE 88
Query: 74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF 108
KP+ C C K F + KIH R HTGEKP+ CEF
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
C K F + L H+R G E+P F C G C ++F L IH KR H E
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTG---EKP-FPCPFPG-CGKIFARSENLKIH-KRTHTGE 118
Query: 74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEK 102
KP++C C + F + D K H VHT +K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
ER R+KC+ EC + F+ + L+ H +R H EKPY+C +C K+F + H RVHT
Sbjct: 15 ERRRYKCD---ECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 100 GEKP 103
G P
Sbjct: 71 GSGP 74
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
Y+C +C KSF D H R HTGEKPY C+ C
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 9 RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIH 65
R + C C K FS+ + L H R G E+P +KC+ EC + F R+ L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTG---EKP-YKCD---ECGKAFIQRSHLIGH 65
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C+K+F + ++ H+ + HG PR EC + F + L H + H EKP+
Sbjct: 13 CTKMFRDNSAMRKHL-HTHG-----PRVHVCA--ECGKAFVESSKLKRH-QLVHTGEKPF 63
Query: 77 QCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF 108
QC+ C K F ++ + H R+HTG++PY C F
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 97
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 42 PR-FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
PR C +G C ++F + + H+ + + C++C K+F K H VHTG
Sbjct: 3 PRTIACPHKG-CTKMFRDNSAMRKHLHT--HGPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 101 EKPYACEF 108
EKP+ C F
Sbjct: 60 EKPFQCTF 67
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
C + F + L+ H+ H +PY C C K F K D K H+ +HTGEKP+ C+ C
Sbjct: 7 CGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
F C++C K F + L H+ S+ RP + C+ C + F ++ + H H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH---SDTRP-YPCQ---YCGKRFHQKSDMKKHT-FIHT 53
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
EKP++C C K+F + HSR HTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+ C C KSF H +H+ +PY C++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC 35
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 77 QCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+CS C K F S Y IH R HTGEKPY CEFC
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVH 98
C + F + LNIH+ R H EKPY+C C + K + H H
Sbjct: 10 CGKFFRSNYYLNIHL-RTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
C C K F L H+R G E+P +KCE C+ + L H++R H+
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTG---EKP-YKCEF---CEYAAAQKTSLRYHLERHHK 57
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 36 GSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHS 95
GSS KCE G+C F+ ++ L H+ R H KPY+C C + H
Sbjct: 1 GSSGSSGPHKCEVCGKC---FSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Query: 96 RVHTGEKPYACEFCP 110
R+H+ E+P+ C+ CP
Sbjct: 57 RIHSDERPFKCQICP 71
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
C+VC K FS ++ LK H+R G +P +KC+ CD + LN H+ R H E
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTG---VKP-YKCK---TCDYAAADSSSLNKHL-RIHSDE 62
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
+P++C C + + +H R HTG+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C+K+++ + LKAH+R G E+P +KC G CD F + L H R H KP+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTG---EKP-YKCTWEG-CDWRFARSDELTRHY-RKHTGAKPF 76
Query: 77 QCSQCSKSFFSKYDH 91
QC C++S FS+ DH
Sbjct: 77 QCGVCNRS-FSRSDH 90
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
C +V+T + L H+ R H EKPY+C+ C F + H R HTG KP+ C C
Sbjct: 23 CTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 74 KPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFC 109
KP+QC C ++F S+ DH H R HTGEKP+AC+ C
Sbjct: 2 KPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDIC 37
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRV 97
C R F+ + L HI R H EKP+ C C + F + K H +
Sbjct: 9 CMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+KPY+C +C SF K + H VHTGEKPY C C
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
+KC+ C F + L H K H EKPY+C+ C F + K H+R+H+GEKP
Sbjct: 18 YKCD---RCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD--HQ 71
C C K F + LK H R G E+P F+C G+C F N+L H R+ ++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTG---EKP-FECPKCGKC--YFRKENLLE-HEARNCMNR 62
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
E+ + CS C ++F + + ++H HTGE PY C C
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 77 QCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+C C K F SKY K+H+R HTGEKP+ C C
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKC 41
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 12 FTCQVCSK-IFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
F C C K F EN L+ RN SE+ F C C F R L +H+ H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV--FTC---SVCQETFRRRMELRLHMV-SH 89
Query: 71 QKEKPYQCSQCSKSFFSKYDHKIHS-RVHTG 100
E PY+CS CS+ F K D + H ++H+G
Sbjct: 90 TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK---YDHKIHSRVHTGEKPYACEF 108
C + F ++ L +H R H EKP++C +C K +F K +H+ + ++ E+ + C
Sbjct: 13 CHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV 71
Query: 109 CPLT 112
C T
Sbjct: 72 CQET 75
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY+CS C KSF K +H R+HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++CS+C K+F +K + +H R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKP 75
E+P F+C EC + F T++ L +H +R H EKP
Sbjct: 10 EKP-FECS---ECQKAFNTKSNLIVH-QRTHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+C + FT ++ + H+ H +PY C C K F K+ H ++HTG KPY C C
Sbjct: 14 QCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
++ CQ C K F++++ H+ G RP G G C + F ++ L H+K H
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLG---LRPY----GCGVCGKKFKMKHHLVGHMK-IH 60
Query: 71 QKEKPYQCSQCSKSFF 86
KPY+C+ C+K F
Sbjct: 61 TGIKPYECNICAKRFM 76
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C +C K+F K + H R+HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C +C K + SK++ +H +VHTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
EKPY C +C K+F H RVHTGEKPY C C
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
EC + F+ ++L H +R H EKPY+C +C K+F H R+HT
Sbjct: 19 ECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
C R FT L IH +R H E+PY C C K+F + + H +H+ EKP+ C+ C
Sbjct: 23 CGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
F C+ C + F+ L H R ++ERP + C+ C + F ++ L H + H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERT---HTDERP-YTCDI---CHKAFRRQDHLRDH-RYIHS 69
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVH 98
KEKP++C +C K F +H +H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+K + C C + F Y+ IH R HT E+PY C+ C
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY CS+C K+F SK IH R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKP 75
EC + F++++ L IH+ R H EKP
Sbjct: 17 ECGKAFSSKSYLIIHM-RTHSGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+CS C KSF K +H ++HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF 108
C R+F+ R LN H K H +K + C + C KSF K K H ++H+ + Y CEF
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
KPY CS+C K+F SK IH R HTGEKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 36 GSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKP 75
GSS +P + C EC + F +++ L IH+ R H EKP
Sbjct: 4 GSSGVKP-YGCS---ECGKAFRSKSYLIIHM-RTHTGEKP 38
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPYQC +C KSF + +H R+HTG P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY C++C KSF K H R+HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C QC K+F K +H RVHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKP++C++C KSF H R+HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K+F + + H ++HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C +C K F + D H VHTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
EKPY+C++C K+F +K + +H R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C++C K+F K H R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C +C K+F + H R+HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
KPYQC++C K+F H RVHTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKPY C++C K F SK +H R+HTGEK
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKPY+C +C K + + D H RVHTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K+F ++ IH H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K+F H R+HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 73 EKPYQCSQCSKSFFSKYDHKI-HSRVHTGEKP 103
EKPY+C +C K+ FS+ H I H RVHTGEKP
Sbjct: 10 EKPYECKECGKA-FSQTTHLIQHQRVHTGEKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 75 PYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
PY+CSQC KSF K +H R+HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C K ++ + LKAH+R G E+P + C+ G C F + L H R H +P+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTG---EKP-YHCDWDG-CGWKFARSDELTRHY-RKHTGHRPF 67
Query: 77 QCSQCSKSFFSKYDH 91
QC +C ++ FS+ DH
Sbjct: 68 QCQKCDRA-FSRSDH 81
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
C + +T + L H+ R H EKPY C C F + H R HTG +P+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C K ++ + LKAH+R G E+P + C+ G C F + L H R H +P+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTG---EKP-YHCDWDG-CGWKFARSDELTRHY-RKHTGHRPF 66
Query: 77 QCSQCSKSFFSKYDH 91
QC +C ++ FS+ DH
Sbjct: 67 QCQKCDRA-FSRSDH 80
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
C + +T + L H+ R H EKPY C C F + H R HTG +P+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE--KPYACEFC 109
C ++F LN H K H EKPY C C F K H R H G KPY C+ C
Sbjct: 13 CGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSC 71
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 13 TCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKR-DHQ 71
C++C KIF L R+K S E+P + C C F ++ ++ H++ D
Sbjct: 9 ACEICGKIFRDVYHLN---RHKLSHSGEKP-YSCP---VCGLRFKRKDRMSYHVRSHDGS 61
Query: 72 KEKPYQCSQCSKSFFSKYDH 91
KPY C C K FS+ DH
Sbjct: 62 VGKPYICQSCGKG-FSRPDH 80
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 78 CSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPL 111
C C K F Y H H+GEKPY+C C L
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGL 43
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
++C VC F ++ + HVR+ H S +P + C+ C + F+ + LN HIK+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRS-HDGSVGKP-YICQ---SCGKGFSRPDHLNGHIKQVHS 90
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+CS C K+F + +H R+H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
E+ Y+CS+C K+F K +H R+HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C+QC K+F + H +HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKPY+CS C KSF K +IH + HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C C KSF +H R+HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
KPY CSQC+K+F K +H R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K+F + + H +HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++C +C KS+ + H RVHTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
+KP++C+ C KSF +K + H R+HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C CSK+F K H + HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
E PY+C +C K+F KY H R H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
E P+ CS+C K F K + IH ++HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP+QC +C K F H RVHTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
EKPY+C+ C K+F K IH R HTGE
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
E+ Y+CS+C K+F K +H R+H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K F H R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
+EKPY+CS+C K+F +H R H+GE
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
F C+VC++ F+ + LK H R+ + E+P + C G C+R FT R++L H ++ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH---TNEKP-YPC---GLCNRAFTRRDLLIRHAQKIH 54
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+ C C+++F + K H R HT EKPY C C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLC 36
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF-----FSKYDHKIHS 95
F CE C R F + L H R H EKPY C C+++F ++ KIHS
Sbjct: 3 FVCE---VCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
E+P++C++C KSF H R+HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++C +C K F + +H ++HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKP 75
E+P FKC EC + F+ R+ LN+H K H EKP
Sbjct: 10 EKP-FKCV---ECGKGFSRRSALNVHHKL-HTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KEKPY+C +C K+F ++ + H +HTGEK
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++C +C KSF +H R+HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSG 42
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++C +C K F H RVHTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKP++C +C K+F H R+HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C++C K+F K +H VHTG KP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 50 GECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACE 107
+C + L H+ + H EKP+ C + C K F S + HS HTGEK + C+
Sbjct: 9 ADCGAAYNKNWKLQAHLSK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACE 107
K Y CS C ++ + + H HTGEKP+ C+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK 37
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C C K+F + H R+HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
+KPY C++C K+F K IH R+HTGE
Sbjct: 8 QKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKPY+C C K + + + +H RVH GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKPY+CS C K+F K IH + HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
EKPY C++C K+F K H R+HTGE
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
KPY C++C K+F SK IH+R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP+ C C K+F H R+HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
E+PY C+ C K+F + + H ++HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQ---------CSQCSKSFFSKYDHKIHSRVHTGEK 102
CDR F+T + L H+ +H P Q C + KSF +KY H RVHTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
++PY+C +C K+F +K H R HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K F H R+HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C +C F+ +K H+ KH +E +F C CD V ++ L +H+++ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKH--TENVAKFHCP---HCDTVIARKSDLGVHLRKQHS 70
Query: 72 KEKP 75
P
Sbjct: 71 YSGP 74
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 95 SRVHTGEKPYACEFC 109
R H+GEKPY C C
Sbjct: 7 GRTHSGEKPYECYIC 21
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K F H RVHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++C C KSF + H +HTGEKP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 69 DHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF 108
D + + + CS C K++F K H+R HTGEKP++C +
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSW 52
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIH 65
C K + + LKAH R G E+P F C +G C+R F + L+ H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTG---EKP-FSCSWKG-CERRFARSDELSRH 68
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
KPYQCS+C KSF Y H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C +C KSF H RVH+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY+C +C K+F H R+HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 60 NMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
N+LN + K +PY C C + F + H R+HTG+KP+ C C
Sbjct: 8 NLLNYVVP----KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 55
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVHT 99
CDR F+ + L HI R H +KP+QC C ++ FS+ DH H R HT
Sbjct: 27 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRN-FSRSDHLTTHIRTHT 73
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
EKPY C +C K+F IH RVHTGE
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 33 NKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
GSS E+P + C+ EC + FT + L+IH +R H E
Sbjct: 1 GSSGSSGEKP-YVCQ---ECGKAFTQSSCLSIH-RRVHTGE 36
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K F H R+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+CS+C K+F H R+HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C C K+F H RVH+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 50 GECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACE 107
+C + L H+ + H EKP+ C + C K F S + HS HTGEK + C+
Sbjct: 18 ADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 76
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ-KEKP 75
C K F+ + L H G F C+ G CD FTT+ + H R H K
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKN----FTCDSDG-CDLRFTTKANMKKHFNRFHNIKICV 104
Query: 76 YQC--SQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
Y C C K+F K+H HT + PY C
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKP++C C KSF + HS VHT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKP++C +C K F++ H R H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C++C K F H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
EKPY+C++C K+F K +H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
+K ++C++C K+F +H R+HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
++C++C K+F K +H ++HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
KPY C++C K+F H +HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
++ Y+C +C KSF K +H R+HTG P +
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 74 KPYQCSQCSKSFFSKYDH-KIHSRVHTGEK 102
KP+QC C + F S+ DH K H+R HTGEK
Sbjct: 1 KPFQCKTCQRKF-SRSDHLKTHTRTHTGEK 29
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY+C++C K F H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KPY+C QCS + K + +H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EK Y+C C K F + H RVHTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C +C K F H +HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
E+ ++CS C K F + H R+HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSG 42
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EK ++CS+C K+F IH R+HTGE P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENPSG 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
+KPY+C++C K F H +HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C++C K+F + + H ++HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
EKPY CS C K+F K +H +HTG
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
+KPY+C +C K+F H RVHTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EK Y+C++C K F H ++HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
E PY+CS+C K+F K H R H GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
K +QC +C + F K H R+HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKP 75
EC R FT ++ LN H +R H EKP
Sbjct: 17 ECGRGFTLKSHLNQH-QRIHTGEKP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTG 100
+PY CS C K F K+ + H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
EK ++C+ C K+F K IH R+HTGE
Sbjct: 8 EKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 11 VFTCQVCSKIFSYENGLKAHVR 32
+FTC+ C+K+F +++ L+AH+R
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLR 30
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 75 PYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
P +C +C K F + + K H R+H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKP+ CS C K+F SK +H + H EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKE---KPYQCSQCSKSF 85
CD+ F + +L++H KR H + CS+C K+F
Sbjct: 21 CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 95 SRVHTGEKPYACEFCPLT 112
R HTGEKPYAC C T
Sbjct: 7 GRTHTGEKPYACSHCDKT 24
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIH 94
R H EKPY CS C K+F K +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMH 34
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EK Y C +C KSF H R+H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
+KP C++C K+F H R+H+GEKP
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C C F + H +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EK ++C +C F ++H VH GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG 42
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KPY C C + F + H R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKP 103
+KPY+C +C K+F H R HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C C K+F H VH+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 1 MSVVHNIH-------RVVFTCQVCSKIFSYENGLKAHVRNKHGSSEERP-RFKCEGRGEC 52
M V H+ H RV + C VC + + L+ H N H ++ P R+ C
Sbjct: 5 MKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRY-------C 56
Query: 53 DRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFS 87
++VF H + H E+ YQC C KSF +
Sbjct: 57 EKVFPLAEYRTKH-EIHHTGERRYQCLACGKSFIN 90
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 52 CDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF-FSKY--DHKIHSRVHTGEKPYACEF 108
C R + L H H EK Y C C K F ++Y H+IH HTGE+ Y C
Sbjct: 28 CKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIH---HTGERRYQCLA 83
Query: 109 C 109
C
Sbjct: 84 C 84
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
Y C C +S+ + H +H+ EK Y C +C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYC 56
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
EKPY C+ C K+F H RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY C C F K H R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EK + C +C K+F +IH RVH GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KP QC C K+F H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
KE P++C++C K+F H +H GE P
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQC 78
C + F+ + LN HIK+ H E+P++C
Sbjct: 17 SCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 74 KPYQCSQCSKSFFSKYDHKIH--SRVHTGEKPYACEF 108
KPY C C K FS+ DH +VHT E+P+ C+
Sbjct: 11 KPYICQSCGKG-FSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCE 47
+ CQ C K FS + L H++ H + ERP KC+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH--TSERPH-KCQ 45
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
E+P+ C+ C K++ H R H G +P +C C
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPEC 38
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIK 67
F C C K + +GL H R G RPR C EC + F ++ +N H+K
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGY---RPR-SCP---ECGKCFRDQSEVNRHLK 53
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
EKP +C++C K+F K +H R H +K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
E+P++C++C K F + H R+H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
E PY C QC KSF + +H R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 11 VFTCQVCSKIFSYENGLKAHVRNKHG 36
+ CQ C K F+ + LK H++ KH
Sbjct: 2 TYQCQYCEKRFADSSNLKTHIKTKHS 27
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 78 CSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLT 112
C C +SF SK + H R+ + + C++CP T
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPAT 65
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 1 MSVVHNIHRVVFTCQVCSKIFSYENGLKAHVRNKH 35
M V ++ + C VC+ FS + L H+R+ H
Sbjct: 106 MKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 1 MSVVHNIHRVVFTCQVCSKIFSYENGLKAHVRNKH 35
M V ++ + C VC+ FS + L H+R+ H
Sbjct: 88 MKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 122
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKP 75
FKC +CDRVFT RN L H + +K P
Sbjct: 13 FKCS---KCDRVFTQRNYLVQHERTHARKSGP 41
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
E PY+C +C K F K H + H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 FTCQVCSKIFSYENGLKAHVRN 33
F C+VC++ F+ + LK H R+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRS 24
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSK 88
EC +ML HI R H +PY C+ C+ SF +K
Sbjct: 6 ECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTK 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,517,632
Number of Sequences: 62578
Number of extensions: 124321
Number of successful extensions: 900
Number of sequences better than 100.0: 186
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 477
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)