RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6628
(132 letters)
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 93.1 bits (232), Expect = 2e-25
Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRG--ECDRVFTTRNMLNIHIKRD 69
+ C + FS + L HV +H E+ C + F + L HI R
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RV 84
Query: 70 HQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
H EKP+ C C K F + KIH R HTGEKP+ CEF C F +SS +H
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 72.7 bits (179), Expect = 2e-17
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 19 KIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQ- 77
S +K + K + + CDR F+T + L H+ P Q
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLS-RPKK---SCDRTFSTMHELVTHV-TMEHVGGPEQN 56
Query: 78 --------CSQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRS 125
C + KSF +KY H RVHTGEKP+ C F C F S +L H+R+
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 69.2 bits (170), Expect = 3e-16
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
C K F + L H+R G E+P F C C ++F L IH KR H E
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTG---EKP-FPCP-FPGCGKIFARSENLKIH-KRTHTGE 118
Query: 74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYAC 106
KP++C C + F + D K H VHT +K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 60.0 bits (146), Expect = 1e-12
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 10/84 (11%)
Query: 50 GECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
G K + + C ++F + ++ H + P
Sbjct: 1 GSSGSSGQPIKQELSC-KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 110 PL---------TFRHSSHLFRHRR 124
+F+ L H R
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIR 83
Score = 45.0 bits (107), Expect = 5e-07
Identities = 7/47 (14%), Positives = 10/47 (21%)
Query: 81 CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
S + + + C TF L H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 37.7 bits (88), Expect = 2e-04
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
F C C KIF+ LK H R G E+P FKCE CDR F + H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTG---EKP-FKCEFE-GCDRRFANSSDRKKH-MHV 144
Query: 70 HQKEKPYQCS 79
H +K S
Sbjct: 145 HTSDKSGPSS 154
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 90.3 bits (225), Expect = 2e-24
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCE--GRGECDRVFTTRNMLNIHIKRD 69
CS+ F + L H+ ++H E + F C G R F + ML +H+ R
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM-RR 61
Query: 70 HQKEKPYQC--SQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRS 125
H EKP++C C KS+ + K H R HTGEKPY CE C F ++S +H+
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 126 LH 127
H
Sbjct: 122 TH 123
Score = 77.2 bits (191), Expect = 3e-19
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 14 CQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKE 73
C + F + L H+R G E+P KC C + ++ L H R H E
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTG---EKP-HKCT-FEGCRKSYSRLENLKTH-LRSHTGE 95
Query: 74 KPYQCSQ--CSKSFFSKYDHKIH-SRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
KPY C CSK+F + D H +R H+ EKPY C+ C + S L +H +
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 71.9 bits (177), Expect = 3e-17
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHI--KRDHQKEKPYQCSQC-----SKSFFSKYDHK 92
E + + C + F ++ L HI + H + K + C + F ++Y
Sbjct: 1 ETD-CRWD---GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLV 56
Query: 93 IHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRRS 125
+H R HTGEKP+ C F C ++ +L H RS
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 56.4 bits (137), Expect = 3e-11
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
C C K +S LK H+R+ G E+P + CE G C + F+ + H R
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTG---EKP-YMCEHEG-CSKAFSNASDRAKHQNRT 122
Query: 70 HQKEKPYQC--SQCSKSFFSKYDHKIHSRVHTG 100
H EKPY C C+K + + H + G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 31.4 bits (72), Expect = 0.043
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 101 EKPYACEFCPLTFRHSSHLFRHRRSLH 127
E + C F L H S H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 88.0 bits (219), Expect = 6e-24
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 12 FTC--QVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
F C C+K + + L+ H R G E+P ++C+ + +C+R F+ + L H +R
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTG---EKP-YQCDFK-DCERRFSRSDQLKRH-QRR 60
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
H KP+QC C + F K H+R HTGEKP++C + C F S L RH
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 61.4 bits (150), Expect = 2e-13
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 73 EKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
++P+ C+ C+K +F ++HSR HTGEKPY C+F C F S L RH+R
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Score = 34.4 bits (80), Expect = 0.003
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 99 TGEKPYACE--FCPLTFRHSSHLFRHRR 124
+ ++P+ C C + SHL H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR 29
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 83.7 bits (208), Expect = 4e-22
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD-- 69
C C K F + LK H R G E+P F+C +C + + + L H R+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTG---EKP-FECP---KCGKCYFRKENLLEHEARNCM 60
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
++ E+ + CS C ++F + + ++H HTGE PY C C F L H LH
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 68.7 bits (169), Expect = 2e-16
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
+C C K F SKY K+H+R HTGEKP+ C C + +L H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
Score = 64.4 bits (158), Expect = 1e-14
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
F C C K + + L H + E+ F C C F R L +H H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCS---VCQETFRRRMELRLH-MVSHT 90
Query: 72 KEKPYQCSQCSKSFFSKYDHKIH-SRVHTGEK 102
E PY+CS CS+ F K D + H ++H+G
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 82.5 bits (205), Expect = 5e-22
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
ERP + C CDR F+ L H R H +KP+QC C ++F H R HT
Sbjct: 2 ERP-YACPVE-SCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
GEKP+AC+ C F S RH +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTK 83
Score = 63.3 bits (155), Expect = 1e-14
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
+ C V C + FS L H+R G ++P F+C C R F+ + L H R
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTG---QKP-FQCR---ICMRNFSRSDHLTTH-IRT 56
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
H EKP+ C C + F + K H+++H +K
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 82.5 bits (205), Expect = 6e-22
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
P KCE C + F+ ++ L H R H KPY+C C + H R+H+
Sbjct: 6 SGP-HKCE---VCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS 60
Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
E+P+ C+ CP R+SS L H R
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLR 85
Score = 72.8 bits (180), Expect = 3e-18
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
C+VC K FS ++ LK H+R G +P +KC+ CD + LN H R H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTG---VKP-YKCK---TCDYAAADSSSLNKH-LRIHS 60
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+P++C C + + +H R HTG+ +
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 70.1 bits (173), Expect = 4e-17
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
P++C C K F K K H R HTG KPY C+ C SS L +H R
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 84.8 bits (211), Expect = 8e-22
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS + L H R G E+P +KC EC + F+ + L H +R H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTG---EKP-YKCP---ECGKSFSDKKDLTRH-QRTHT 73
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
EKPY+C +C KSF + + + H R HTGEKPYAC C +F +HL H+R
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 84.0 bits (209), Expect = 2e-21
Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS L+AH R G E+P + C EC + F+ L H +R H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTG---EKP-YACP---ECGKSFSQLAHLRAH-QRTHT 129
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
EKPY+C +C KSF + + H R HTGEKPY C C +F L H+R
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 77.5 bits (192), Expect = 5e-19
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
E+P + C EC + F+ + L H +R H EKPY+C +C KSF K D H R HT
Sbjct: 19 EKP-YACP---ECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
GEKPY C C +F ++L H+R
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQR 98
Score = 71.7 bits (177), Expect = 7e-17
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 56 FTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRH 115
+ EKPY C +C KSF H R HTGEKPY C C +F
Sbjct: 3 EFGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 116 SSHLFRHRR 124
L RH+R
Sbjct: 62 KKDLTRHQR 70
Score = 62.8 bits (154), Expect = 2e-13
Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C C K FS L+AH R G E+P +KC EC + F+ + L+ H +R H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTG---EKP-YKCP---ECGKSFSREDNLHTH-QRTHT 157
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
EKPY+C +C KSF + +H R HTG+K
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 49.7 bits (120), Expect = 1e-08
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 84 SFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S F + + GEKPYAC C +F S HL H+R
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQR 42
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 81.0 bits (201), Expect = 4e-21
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
C C+K+F + ++ H+ HG R C EC + F + L H +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHT-HG---PRV-HVCA---ECGKAFVESSKLKRH-QLV 56
Query: 70 HQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
H EKP+QC+ C K F ++ + H R+HTG++PY C F C F S++L H
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 64.8 bits (159), Expect = 9e-15
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
C C K F + LK H G E+P F+C C + F+ L H R H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTG---EKP-FQCTFE-GCGKRFSLDFNLRTH-VRIHT 88
Query: 72 KEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPY 104
++PY C C+K F + K H H K
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 55.2 bits (134), Expect = 5e-11
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 72 KEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+ + C C+K F + H H G + + C C F SS L RH+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL 55
Score = 35.2 bits (82), Expect = 0.001
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
F C C K FS + L+ HVR G +RP + C C++ F L H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTG---DRP-YVCP-FDGCNKKFAQSTNLKSH-ILT 116
Query: 70 HQKEKPYQ 77
H K K Q
Sbjct: 117 HAKAKNNQ 124
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 77.5 bits (192), Expect = 6e-20
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
++ F C+ C R FT L IH +R H E+PY C C K+F + + H +H+
Sbjct: 15 KKE-FICK---FCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
EKP+ C+ C F S L H+
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKT 94
Score = 72.1 bits (178), Expect = 8e-18
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR 121
+ + + +K + C C + F Y+ IH R HT E+PY C+ C FR HL
Sbjct: 5 SSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 122 HRR 124
HR
Sbjct: 64 HRY 66
Score = 67.8 bits (167), Expect = 3e-16
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
F C+ C + F+ L H R ERP + C+ C + F ++ L H + H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTD---ERP-YTCD---ICHKAFRRQDHLRDH-RYIHS 69
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
KEKP++C +C K F +H +H
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 37.0 bits (87), Expect = 3e-04
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+TC +C K F ++ L+ H E+P FKC+ EC + F L +H K H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSK---EKP-FKCQ---ECGKGFCQSRTLAVH-KTLHM 97
Query: 72 KEKPYQCS 79
+ +
Sbjct: 98 QTSSPTAA 105
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 78.8 bits (195), Expect = 1e-19
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C F+ + +K H H + + C C + F N L +H + H ++ PY
Sbjct: 80 CDLRFTTKANMKKHFNRFHN--IKICVYVCHFE-NCGKAFKKHNQLKVH-QFSHTQQLPY 135
Query: 77 QCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
+C C K F K H +VH G + C + + +H HQ
Sbjct: 136 ECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 73.0 bits (180), Expect = 2e-17
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRV 97
+ + C +C + L H H EKP+ C + C K F S + HS
Sbjct: 10 YKR-YICS-FADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Query: 98 HTGEKPYACE--FCPLTFRHSSHLFRHRR 124
HTGEK + C+ C L F +++ +H
Sbjct: 67 HTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Score = 69.5 bits (171), Expect = 4e-16
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 15 QVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH--QK 72
+ C K F+ + L H G E+ F C+ CD FTT+ + H K
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTG---EKN-FTCD-SDGCDLRFTTKANMKKH-FNRFHNIK 101
Query: 73 EKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYAC--EFCPLTFRHSSHLFRHRR 124
Y C C K+F K+H HT + PY C E C F S L RH +
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 157
Score = 69.2 bits (170), Expect = 8e-16
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 17 CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
C ++ L+AH+ G E+P F C+ C++ FT+ + L H H EK +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTG---EKP-FPCK-EEGCEKGFTSLHHLTRH-SLTHTGEKNF 73
Query: 77 QCSQ--CSKSFFSKYDHKIHSRVHTGEK--PYACEF--CPLTFRHSSHLFRHRR 124
C C F +K + K H K Y C F C F+ + L H+
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Score = 60.7 bits (148), Expect = 1e-12
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 67 KRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACE--FCPLTFRHSSHLFRH 122
K K Y CS C ++ + + H HTGEKP+ C+ C F HL RH
Sbjct: 4 KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Query: 123 RR 124
Sbjct: 64 SL 65
Score = 41.4 bits (98), Expect = 2e-05
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 94 HSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
+ K Y C F C + + L H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLC 35
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 74.8 bits (185), Expect = 3e-19
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
F C+ C + F + L+ H H +PY C C K F K D K H+ +HTGEKP
Sbjct: 2 FDCK---ICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 104 YACEFCPLTFRHSSHLFRHRR 124
+ C+ C F SS+L H R
Sbjct: 58 HKCQVCGKAFSQSSNLITHSR 78
Score = 34.7 bits (81), Expect = 0.001
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 36/89 (40%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ CQ C K F ++ +K H H
Sbjct: 30 YPCQYCGKRFHQKSDMKKH------------------------------------TFIHT 53
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
EKP++C C K+F + HSR HTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 74.8 bits (185), Expect = 9e-19
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ CQ C K F++++ H+ G RP + C G C + F ++ L H + H
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLG---LRP-YGC---GVCGKKFKMKHHLVGH-MKIHT 61
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHL 119
KPY+C+ C+K F + H V + K Y +S
Sbjct: 62 GIKPYECNICAKRFMWRDS--FHRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 73.2 bits (181), Expect = 3e-18
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
++ + C+ C + FT ++ + H H +PY C C K F K+ H ++HT
Sbjct: 8 DKL-YPCQ----CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 100 GEKPYACEFCPLTFRHSSHLFRHRR 124
G KPY C C F HR
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRH 84
Score = 64.4 bits (158), Expect = 1e-14
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+K Y C QC KSF K H +H G +PY C C F+ HL H +
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 43.6 bits (104), Expect = 8e-07
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S +G+K Y C+ C +F H S RH
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMS 30
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 74.1 bits (183), Expect = 9e-19
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
CE C ++F LN H K H EKPY C C F K H R H
Sbjct: 5 SSG-VACE---ICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Query: 100 GE--KPYACEFCPLTFRHSSHLFRHRRSLH 127
G KPY C+ C F HL H + +H
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 68.3 bits (168), Expect = 2e-16
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
C C K F Y H H+GEKPY+C C L F+ + H R
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 34.8 bits (81), Expect = 0.001
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
++C VC F ++ + HVR H S +P + C+ C + F+ + LN HIK+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVR-SHDGSVGKP-YICQ---SCGKGFSRPDHLNGHIKQVHS 90
Query: 72 KEK 74
Sbjct: 91 GPS 93
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 72.2 bits (178), Expect = 4e-18
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRV 97
C+ C R+F+ R LN H K H +K + C + C KSF K K H ++
Sbjct: 5 SSG-MPCDFP-GCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 98 HTGEKPYACEFC 109
H+ + Y CEF
Sbjct: 63 HSDTRDYICEFS 74
Score = 56.4 bits (137), Expect = 5e-12
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 70 HQKEKPYQCS--QCSKSFFSKYDHKIHSRV-HTGEKPYACEF--CPLTFRHSSHLFRHRR 124
C C + F ++ H + H +K ++C C +F HL H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 52.2 bits (126), Expect = 2e-10
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 12 FTCQV--CSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRD 69
C C +IFS L H + +H ++ F C C + F + L H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKS-FSCPEPA-CGKSFNFKKHLKEH-MKL 62
Query: 70 HQKEKPYQCSQCSKSF 85
H + Y C S
Sbjct: 63 HSDTRDYICEFSGPSS 78
Score = 39.1 bits (92), Expect = 2e-05
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 98 HTGEKPYACEF--CPLTFRHSSHLFRHRRSLH 127
+G C+F C F + +L H++ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 71.4 bits (176), Expect = 7e-18
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE--KPYACEFCPLTFRHSSHL 119
R H EKPY+C C F K+H E + C C S L
Sbjct: 3 SGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 120 FRHRRSLH 127
H R H
Sbjct: 62 GVHLRKQH 69
Score = 60.2 bits (147), Expect = 1e-13
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 27 LKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH-QKEKPYQCSQCSKSF 85
+ R G E+P ++C C FT + +HI + H + + C C
Sbjct: 3 SGSSGRTHSG---EKP-YECY---ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
Query: 86 FSKYDHKIHSR-VHTGEKPYA 105
K D +H R H+ P +
Sbjct: 56 ARKSDLGVHLRKQHSYSGPSS 76
Score = 53.7 bits (130), Expect = 6e-11
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C +C F+ +K H+ KH E +F C CD V ++ L +H+++ H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHT--ENVAKFHCP---HCDTVIARKSDLGVHLRKQHS 70
Query: 72 KEKPY 76
P
Sbjct: 71 YSGPS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 70.2 bits (173), Expect = 2e-17
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
P +CS+CS S SK +IH R+H ++P+ C +C + S+L +H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 58.3 bits (142), Expect = 7e-13
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
P KC EC +++ L IH +R H ++P++C+ CS + H +
Sbjct: 7 GHP-EKC---SECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 100 GEKPYAC 106
G+
Sbjct: 62 GDMSGPS 68
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 70.2 bits (173), Expect = 2e-17
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR 121
+ H +KPY+C +C SF K + H VHTGEKPY C C F ++L
Sbjct: 5 HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 122 HRR 124
H R
Sbjct: 64 HTR 66
Score = 59.4 bits (145), Expect = 3e-13
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
++P +KC+ C F + L H K H EKPY+C+ C F + K H+R+H+
Sbjct: 15 DKP-YKCD---RCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 100 GEKPY 104
GEKPY
Sbjct: 70 GEKPY 74
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 69.4 bits (171), Expect = 5e-17
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
F+C C R F+ + L H R H EKP+ C C + F + K H + P
Sbjct: 4 FQCR---ICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILP 58
Query: 104 YACEFCPLTFRHSSHLFRHRR 124
+ + HL
Sbjct: 59 ILEDKVEELLSKNYHLENEVA 79
Score = 66.0 bits (162), Expect = 1e-15
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 74 KPYQCSQCSKSFFSKYDH-KIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
KP+QC C ++F S+ DH H R HTGEKP+AC+ C F S RHR
Sbjct: 2 KPFQCRICMRNF-SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 61.7 bits (151), Expect = 5e-14
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
F C++C + FS + L H+R G E+P F C+ C R F + H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG---EKP-FACD---ICGRKFARSDERKRH-RDIQ- 54
Query: 72 KEKPYQCSQCSKSFFSKYD---HKIHSRVHTGEK 102
P + + Y + GE+
Sbjct: 55 HILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 68.2 bits (168), Expect = 1e-16
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFR 121
+ ++ + Y+C +C KSF D H R HTGEKPY C+ C F SHL
Sbjct: 6 SGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 122 HRR 124
H R
Sbjct: 65 HHR 67
Score = 55.9 bits (136), Expect = 7e-12
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
R +KC+ EC + F+ + L+ H +R H EKPY+C +C K+F + H RVHT
Sbjct: 16 RRR-YKCD---ECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 100 GEKPY 104
G P
Sbjct: 71 GSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 67.5 bits (166), Expect = 2e-16
Identities = 26/58 (44%), Positives = 30/58 (51%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
H EKPY C +C K+F H RVHTGEKPY C C F +S L H+R
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 56.3 bits (137), Expect = 5e-12
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
E+P + C EC + F+ ++L H +R H EKPY+C +C K+F H R+HT
Sbjct: 12 EKP-YGCV---ECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Query: 100 GEKPYA 105
Sbjct: 67 SGPSSG 72
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S +H+GEKPY C C F SS L +H+R
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQR 35
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 66.1 bits (162), Expect = 9e-16
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGE 101
+ C C + F N L +H + H ++ PY+C C K F K H +VH G
Sbjct: 2 YVCHFEN-CGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 102 KPYACEFCPLTFRHSSHLFRHRRSLH 127
+ C + + +H H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 66.5 bits (163), Expect = 1e-15
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 32 RNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKY 89
+ + R C+ G C +V+T + L H R H EKPY+C+ C F
Sbjct: 5 SSGPDLEKRRI-HYCDYPG-CTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 90 DHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+ H R HTG KP+ C C +F S HL H +
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 30.3 bits (69), Expect = 0.070
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 84 SFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S S R+H + P C + SSHL H R
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLR 38
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 64.9 bits (159), Expect = 3e-15
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 62 LNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGE----KPYACEFCPLTFRHSS 117
R H EKPY CS C K+F K +H + + + C C TF +
Sbjct: 3 SGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 118 HLFRHRR 124
+ RH
Sbjct: 62 TMARHAD 68
Score = 60.6 bits (148), Expect = 1e-13
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKR---DHQKEKPYQCSQCSKSFFSKYDHKIHSR 96
E+P + C CD+ F + +L++H KR + + CS+C K+F + H+
Sbjct: 13 EKP-YACS---HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 97 VHTGEKPYACEFCPLTF 113
G E +
Sbjct: 69 NCAGPDGVEGENSGPSS 85
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 63.7 bits (156), Expect = 5e-15
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
+ + C C+++F + K H R HT EKPY C C F L RH + +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 47.1 bits (113), Expect = 2e-08
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 44 FKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHS-RVHTGEK 102
F CE C R F + L H R H EKPY C C+++F + H+ ++H+G
Sbjct: 3 FVCE---VCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 64.5 bits (158), Expect = 5e-15
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEF 108
C + +T + L H R H EKPY C C F + H R HTG +P+ C+
Sbjct: 12 GCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 109 CPLTFRHSSHLFRHRR 124
C F S HL H +
Sbjct: 71 CDRAFSRSDHLALHMK 86
Score = 60.2 bits (147), Expect = 2e-13
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC--EFCPLTFRHSSHLFRHRRS 125
+ C K++ K H R HTGEKPY C + C F S L RH R
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 64.0 bits (156), Expect = 6e-15
Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHT---GEKPYACEFCPLTFRHSSHLFRHRRSLH 127
QC C + K H R H + CEFC F + HR H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 53.9 bits (130), Expect = 6e-11
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 36 GSSEERPRFKCEGRGECDRVFTTRNMLNIHIKR--DHQKEKPYQCSQCSKSFFSKYDHKI 93
GSS +CE C + LN H ++ + + C C K F
Sbjct: 1 GSSGSSG-LQCE---ICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA 56
Query: 94 HSRVHTGEKPYACEFCP 110
H A +
Sbjct: 57 HRSKSHPALLLAPQESS 73
Score = 48.9 bits (117), Expect = 5e-09
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
C++C + L H R KH + RF CE C + F + + H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCE---FCGKRFEKPDSVAAHRSKSHP 63
Query: 72 KEKPYQCSQCSKSF 85
S
Sbjct: 64 ALLLAPQESSGPSS 77
Score = 38.9 bits (91), Expect = 2e-05
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 98 HTGEKPYACEFCPLTFRHSSHLFRHRR 124
+G CE C T R + L H+R
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR 28
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 63.0 bits (154), Expect = 1e-14
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 66 IKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRV--HTGEKPYACEFCPLTFRHSSHLFRHR 123
++ + E Y+C CS+ + + H K Y C FC F ++ H
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 124 RSLHQM 129
+ +H++
Sbjct: 61 KIIHKI 66
Score = 37.9 bits (89), Expect = 5e-05
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 34/89 (38%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C+VCS+++++ + H H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSH----------------------------------KR 36
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
K Y C C K F K + H ++
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 55.6 bits (135), Expect = 4e-12
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP+ CS C K+F SK +H + H EKP
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 40.6 bits (96), Expect = 3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S +GEKP+ C C F S+L H++
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
Score = 33.7 bits (78), Expect = 0.001
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P F C C++ F++++ L +H ++ H +EKP S
Sbjct: 8 EKP-FGC---SCCEKAFSSKSYLLVH-QQTHAEEKPSGPS 42
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 7e-12
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+CS C K+F K IH + HTGE+
Sbjct: 4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 43.3 bits (103), Expect = 3e-07
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F S L H++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 31.3 bits (72), Expect = 0.010
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC +C + FT ++ L+IH ++ H E+ S
Sbjct: 10 EKP-YKCS---DCGKAFTRKSGLHIH-QQSHTGERHSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 9e-12
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
PY+CSQC KSF K +H R+HT EKP
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 41.8 bits (99), Expect = 1e-06
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
G PY C C +F L H+R
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR 33
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
P +KC +C++ F+ + L +H +R H +EKP S
Sbjct: 10 VNP-YKCS---QCEKSFSGKLRLLVH-QRMHTREKPSGPSS 45
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.8 bits (133), Expect = 9e-12
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
KPY C++C K+F SK IH+R HTGE +
Sbjct: 4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.2 bits (108), Expect = 6e-08
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG KPY C C FR S+L H R
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTR 33
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 1e-11
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY CS+C K+F SK IH R H+GEKP
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-08
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
GEKPY C C F S+L H R
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMR 33
Score = 29.4 bits (67), Expect = 0.044
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P + C EC + F++++ L IH R H EKP S
Sbjct: 10 EKP-YGCS---ECGKAFSSKSYLIIH-MRTHSGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 1e-11
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+CS C KSF K +H R+HTGE P
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.1 bits (105), Expect = 1e-07
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C +F S L H+R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR 33
Score = 29.4 bits (67), Expect = 0.047
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P ++C +C + F ++ L++H +R H E P S
Sbjct: 10 EKP-YECS---DCGKSFIKKSQLHVH-QRIHTGENPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 1e-11
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C +C K F + D H VHTGEKP
Sbjct: 4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-08
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY CE C F L+ H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM 33
Score = 30.6 bits (70), Expect = 0.020
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KCE EC + F R L H H EKP S
Sbjct: 10 EKP-YKCE---ECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 1e-11
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+CS C KSF K +IH + HTGE+
Sbjct: 4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 44.4 bits (106), Expect = 1e-07
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C +F S L H++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
Score = 31.7 bits (73), Expect = 0.006
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC +C + FT ++ L IH ++ H E+ S
Sbjct: 10 EKP-YKCS---DCGKSFTWKSRLRIH-QKCHTGERHSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 1e-11
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+CS C KSF K +H ++HTGEKP
Sbjct: 4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 1e-07
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C +F S L H++
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ 33
Score = 28.7 bits (65), Expect = 0.11
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
C + FT ++ L++H ++ H EKP S
Sbjct: 17 ICGKSFTKKSQLHVH-QQIHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C +C K + SK++ +H +VHTGE+P
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 46.8 bits (112), Expect = 2e-08
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY CE C + +L H++
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
Score = 32.1 bits (74), Expect = 0.005
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P +KCE +C + + ++ L++H ++ H E+P S
Sbjct: 10 EKP-YKCE---KCGKGYNSKFNLDMH-QKVHTGERPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C +C K + + D H RVHTGEK
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 44.4 bits (106), Expect = 1e-07
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKPY C C ++ L H+R
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR 33
Score = 30.6 bits (70), Expect = 0.018
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC EC + + R L+ H +R H EK S
Sbjct: 10 EKP-YKCV---ECGKGYKRRLDLDFH-QRVHTGEKLSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
KPY CSQC+K+F K +H R HTG KP
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 44.8 bits (107), Expect = 9e-08
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG KPY C C TF S L H+R
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
Score = 28.7 bits (65), Expect = 0.083
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
+P + C +C + F+ ++ L +H +R H KP S
Sbjct: 10 VKP-YGCS---QCAKTFSLKSQLIVH-QRSHTGVKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 2e-11
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K+F + + H ++HTGEKP
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-07
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F S+LF H++
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQK 33
Score = 31.3 bits (72), Expect = 0.011
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P ++C EC + FT R+ L H ++ H EKP S
Sbjct: 10 EKP-YRCA---ECGKAFTDRSNLFTH-QKIHTGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.0 bits (131), Expect = 2e-11
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C++C K+F +K + +H R HTGE +
Sbjct: 4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 45.5 bits (109), Expect = 4e-08
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F S+L H+R
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQR 33
Score = 28.2 bits (64), Expect = 0.15
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQC 78
E+P ++C EC + F T++ L +H +R H E
Sbjct: 10 EKP-YECN---ECQKAFNTKSNLMVH-QRTHTGESGPSS 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-11
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY C++C K+F K H R HTGEKP
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-08
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKPY C C TF S L H+R
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQR 33
Score = 28.7 bits (65), Expect = 0.10
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P + C EC + F+ +++L+ H +R H EKP S
Sbjct: 10 EKP-YGCN---ECGKTFSQKSILSAH-QRTHTGEKPSGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 3e-11
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP +C++C K+F K +H R H +K
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.2 bits (100), Expect = 9e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP C C F S L H+R
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQR 33
Score = 30.6 bits (70), Expect = 0.018
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P KC EC + F ++ L +H +R H +K S
Sbjct: 10 EKP-CKCT---ECGKAFCWKSQLIMH-QRTHVDDKHSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+ Y+CS+C K+F K +H R+H GEKP
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE+ Y C C F S L H+R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR 33
Score = 28.6 bits (65), Expect = 0.11
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
ER ++C EC + F ++ L++H +R H+ EKP S
Sbjct: 10 ERH-YECS---ECGKAFIQKSTLSMH-QRIHRGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
+ EKPYQCS+C KSF Y H HT EKP
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 45.2 bits (108), Expect = 5e-08
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
GEKPY C C +F S L +H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI 33
Score = 29.4 bits (67), Expect = 0.045
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P ++C EC + F+ L H H +EKP S
Sbjct: 10 EKP-YQCS---ECGKSFSGSYRLTQH-WITHTREKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C++C K+F ++ IH H+GEKP
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 5e-08
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C FR S L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQA 33
Score = 29.4 bits (67), Expect = 0.051
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC EC + F R+ L IH + H EKP S
Sbjct: 10 EKP-YKCN---ECGKAFRARSSLAIH-QATHSGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP++CS+C K+F +K + +H R HTGEKP
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 9e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C C F S+L H+R
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQR 33
Score = 30.5 bits (70), Expect = 0.020
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P F+C EC + F T++ L +H +R H EKP S
Sbjct: 10 EKP-FECS---ECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C C KSF +H R+HTGEKP
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-08
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C+ C +FR+ S L H+R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
Score = 29.8 bits (68), Expect = 0.036
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC+ C + F + L +H +R H EKP S
Sbjct: 10 EKP-YKCD---VCHKSFRYGSSLTVH-QRIHTGEKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C C K + + + +H RVH GEK
Sbjct: 4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 44.4 bits (106), Expect = 1e-07
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+ EKPY CE C + +L H+R
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
Score = 31.3 bits (72), Expect = 0.008
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KCE +C + + R L++H +R H EK S
Sbjct: 10 EKP-YKCE---DCGKGYNRRLNLDMH-QRVHMGEKTSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.3 bits (129), Expect = 4e-11
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+ ++CS C K F + H R+HTGEKP
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.5 bits (106), Expect = 9e-08
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
GE+ + C C F +S+ +HRR
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRR 33
Score = 29.0 bits (66), Expect = 0.082
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
ER +C +C + F + H +R H EKP S
Sbjct: 10 ERG-HRCS---DCGKFFLQASNFIQH-RRIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
++PY+C +C K+F +K H R HTGEKP
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG++PY C C F+ S L HRR
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRR 33
Score = 28.7 bits (65), Expect = 0.095
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
+RP ++C EC + F T++ L H +R H EKP S
Sbjct: 10 QRP-YECI---ECGKAFKTKSSLICH-RRSHTGEKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EK ++C +C F ++H VH GEKP
Sbjct: 4 GSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-07
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
GEK + C C + F +S L H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 34.4 bits (80), Expect = 7e-04
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+ +KC ECD F+ + L +H + H EKP S
Sbjct: 10 EKT-WKCR---ECDMCFSQASSLRLH-QNVHVGEKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E P+ CS+C K F K + IH ++HTGE+P
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 44.4 bits (106), Expect = 9e-08
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE P+ C C F H ++L H++
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK 33
Score = 31.3 bits (72), Expect = 0.009
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E P F C EC +VFT + L IH ++ H E+P S
Sbjct: 10 ENP-FICS---ECGKVFTHKTNLIIH-QKIHTGERPSGPS 44
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 53.9 bits (130), Expect = 5e-11
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 67 KRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACEF--CPLTFRHSSHLFRH 122
+ D + + + CS C K++F K H+R HTGEKP++C + C F S L RH
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 123 RRS 125
RR+
Sbjct: 69 RRT 71
Score = 33.5 bits (77), Expect = 0.003
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 28 KAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ--CSKSF 85
+ S C G C + + + L H R H EKP+ CS C + F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPG-CGKTYFKSSHLKAHT-RTHTGEKPFSCSWKGCERRF 59
Query: 86 FSKYDHKIHSRVH 98
+ H R H
Sbjct: 60 ARSDELSRHRRTH 72
Score = 30.4 bits (69), Expect = 0.043
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 94 HSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
+ + + C C T+ SSHL H R
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR 40
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-11
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+ Y+CS+C K+F K +H R+HTGEKP
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE+ Y C C F S L H+R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQR 33
Score = 27.5 bits (62), Expect = 0.24
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
ER ++C EC + F ++ L +H +R H EKP S
Sbjct: 10 ERH-YECS---ECGKAFARKSTLIMH-QRIHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 5e-11
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP++C C KSF + HS VHT EKP
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C+ C +F S L RH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM 33
Score = 30.2 bits (69), Expect = 0.026
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P FKC+ C + F R+ LN H H EKP S
Sbjct: 10 EKP-FKCD---ICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.9 bits (128), Expect = 5e-11
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
+KP++C+ C KSF +K + H R+HTGEK
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 46.4 bits (111), Expect = 2e-08
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG+KP+ C C +FR +L H+R
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQR 33
Score = 28.3 bits (64), Expect = 0.13
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
++P F+C C + F + L H +R H EK S
Sbjct: 10 QKP-FECT---HCGKSFRAKGNLVTH-QRIHTGEKSGPSS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 53.1 bits (128), Expect = 5e-11
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
E PY C QC KSF + +H R + P +
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 38.0 bits (89), Expect = 3e-05
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S GE PY C C +F L H+R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 27.6 bits (62), Expect = 0.21
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPY 76
E P + C G+C + FT R L +H +R + P
Sbjct: 9 ETP-YLC---GQCGKSFTQRGSLAVH-QRSCSQSGPS 40
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP++C++C KSF H R+HTGEKP
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-08
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C C +F SS L H+R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQR 33
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 52.6 bits (127), Expect = 6e-11
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY+C QC K+F K +H RVHTG P +
Sbjct: 3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 44.5 bits (106), Expect = 1e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S GEKPY C+ C F L H R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
+KPY+C +C K+F H RVHTGE+
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 43.7 bits (104), Expect = 2e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+G+KPY C+ C TF HL +H+R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKR 33
Score = 29.0 bits (66), Expect = 0.063
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
++P ++C+ EC + F LN H KR H E+ S
Sbjct: 10 KKP-YECK---ECRKTFIQIGHLNQH-KRVHTGERSSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 53.0 bits (128), Expect = 6e-11
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY C +C KSF H RVH+GEKP
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-08
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C+ C +FR +S L +H+R
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQR 33
Score = 29.1 bits (66), Expect = 0.076
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P + C+ EC + F + L H +R H EKP S
Sbjct: 10 EKP-YNCK---ECGKSFRWASCLLKH-QRVHSGEKPSGPSS 45
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.9 bits (128), Expect = 6e-11
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP++C +C K F++ H R H+GEKP
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 44.9 bits (107), Expect = 7e-08
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKP+ CE C F +S + H+R
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR 33
Score = 29.8 bits (68), Expect = 0.036
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P FKCE EC + F T + H +R H EKP S
Sbjct: 10 EKP-FKCE---ECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-11
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E PY+C +C K+F KY H R H GEKP
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.0 bits (105), Expect = 2e-07
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE PY C C F L H+R
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQR 33
Score = 26.7 bits (60), Expect = 0.56
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E P ++C EC + F+ + L H +R H EKP S
Sbjct: 10 ENP-YECH---ECGKAFSRKYQLISH-QRTHAGEKPSGPS 44
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 53.5 bits (129), Expect = 7e-11
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 68 RDHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
K +PY C C + F + H R+HTG+KP+ C C F S HL H R
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 42.3 bits (100), Expect = 1e-06
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 28 KAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFS 87
+ + + RP + C CDR F+ + L H R H +KP+QC C ++ FS
Sbjct: 5 PMNNLLNYVVPKMRP-YACP-VESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRN-FS 60
Query: 88 KYDH-KIHSRVHT 99
+ DH H R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 34.2 bits (79), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 86 FSKYDHKIHSRVHTGEKPYAC--EFCPLTFRHSSHLFRHRRS 125
++ + V +PYAC E C F S L RH R
Sbjct: 3 PHPMNNL-LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 7e-11
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EK Y C +C KSF H R+H+GEKP
Sbjct: 4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 5e-08
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEK Y C+ C +F + L +H R
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER 33
Score = 28.3 bits (64), Expect = 0.12
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+ + C+ EC + F+ L H +R H EKP S
Sbjct: 10 EKL-YNCK---ECGKSFSRAPCLLKH-ERLHSGEKPSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 7e-11
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+CS C K+F + +H R+H+G+KP
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-08
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F H L H+R
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR 33
Score = 28.6 bits (65), Expect = 0.11
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
C + F+ R L++H +R H +KP S
Sbjct: 17 VCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 52.5 bits (127), Expect = 7e-11
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY C C F K H R+HTG P +
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 47.5 bits (114), Expect = 7e-09
Identities = 15/31 (48%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S GEKPY CE C FRH L H R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR 32
Score = 27.5 bits (62), Expect = 0.24
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 12 FTCQVCSKIFSYENGLKAHVR 32
+ C++C F + LK+H+R
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-11
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
+K ++C++C K+F +H R+HTGEKP
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 5e-08
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
G+K + C C TF SS L H+R
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR 33
Score = 30.6 bits (70), Expect = 0.020
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
++ FKC EC + FT + L +H +R H EKP S
Sbjct: 10 KKL-FKCN---ECKKTFTQSSSLTVH-QRIHTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 8e-11
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
KPY C++C K+F H +HTGEKP
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG KPY C C F S L H+
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQV 33
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP+ C C K+F H R+HTGEKP
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C C F L +HRR
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
Score = 29.4 bits (67), Expect = 0.048
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P F C +C + F+ LN H +R H EKP S
Sbjct: 10 EKP-FDCI---DCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-11
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
K ++C++C K+F K +H ++HTGEKP
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-07
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG K + C C F S L H++
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQK 33
Score = 30.2 bits (69), Expect = 0.027
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
+ F+C EC + FT ++ L++H ++ H EKP S
Sbjct: 10 GKH-FECT---ECGKAFTRKSTLSMH-QKIHTGEKPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-11
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K+F + + H +HTGEKP
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C FR S+L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV 33
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 52.6 bits (127), Expect = 9e-11
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 66 IKRDHQKEKPYQCSQCSKSFFSKYDHKIHS-RVHTGEKPYACEFCPLTF 113
KPY C C K F H +VHT E+P+ C+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 46.0 bits (110), Expect = 4e-08
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 38 SEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSF 85
S +P + C+ C + F+ + LN HIK+ H E+P++C
Sbjct: 8 SVGKP-YICQ---SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 44.5 bits (106), Expect = 1e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
+ KPY C+ C F HL H + +H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY C++C KSF K H R+HTGEKP
Sbjct: 4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-08
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C +F SHL RHRR
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR 33
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C CSK+F K H + HTGEKP
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C+ C F +HL +H++
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQK 33
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP++C +C K F + +H ++HTGEKP
Sbjct: 5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-07
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C C F S L H +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHK 33
Score = 31.3 bits (72), Expect = 0.009
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P FKC EC + F+ R+ LN+H + H EKP S
Sbjct: 10 EKP-FKCV---ECGKGFSRRSALNVH-HKLHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
KPYQC++C K+F H RVHTGEKP
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-08
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG KPY C C F +S L RH+R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQR 33
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 52.1 bits (126), Expect = 1e-10
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E PY+CS+C K+F K H R H GE +
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 39.4 bits (93), Expect = 7e-06
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S +GE PY C C F L H+R
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQR 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+PY C+ C K+F + + H ++HTGEKP
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE+PY C C F S+L +H++
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQK 33
Score = 29.4 bits (67), Expect = 0.059
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
ERP + C C + FT R+ L H ++ H EKP S
Sbjct: 10 ERP-YICT---VCGKAFTDRSNLIKH-QKIHTGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 1e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY C +C K+F + H R+HTGEKP
Sbjct: 4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-08
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY CE C F H S L H+R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQR 33
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 2e-10
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EK Y+C C K F + H RVHTGEKP
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 6e-09
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
GEK Y C+ C F SSHL H+R
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
Score = 29.4 bits (67), Expect = 0.047
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+ +KC+ C + F+ + L H +R H EKP S
Sbjct: 10 EKC-YKCD---VCGKEFSQSSHLQTH-QRVHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
+KPY+C++C K F H +HTGEKP
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TG+KPY C C F +SHL RHR
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY C+ C K+F H RVHT E
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 46.0 bits (110), Expect = 2e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY+C C F S+HL +H R
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 2e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C+QC K+F + H +HTG+KP
Sbjct: 4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 44.4 bits (106), Expect = 1e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F S L H+
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQA 33
Score = 27.9 bits (63), Expect = 0.17
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
+C + F+ R+ L H + H +KP S
Sbjct: 17 QCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 51.8 bits (125), Expect = 2e-10
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C++C K+F K +H R H G +
Sbjct: 4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 43.3 bits (103), Expect = 3e-07
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKPY C C F S L H R
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHER 33
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C C K+F H RVH+GEKP
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-08
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 93 IHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C+ C F H + L +H+R
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQR 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C +C K+F K + H R+HTGEKP
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 7e-08
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F ++L +H+R
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQR 33
Score = 29.4 bits (67), Expect = 0.054
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P ++C GEC + F + L H +R H EKP S
Sbjct: 10 EKP-YRC---GECGKAFAQKANLTQH-QRIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 2e-10
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY C++C K+F + + H ++HT +KP
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F S+L +H++
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK 33
Score = 29.0 bits (66), Expect = 0.084
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P + C EC + FT R+ L H ++ H K+KP S
Sbjct: 10 EKP-YICA---ECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 51.4 bits (124), Expect = 2e-10
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
++ Y+C +C KSF K +H R+HTG P +
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 41.4 bits (98), Expect = 1e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S +G++ Y C+ C +FR L H R
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHER 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K F H R+HTGEKP
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-08
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C FRH+S+L RH+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQR 33
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K F H R+HTG KP
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F +SHL H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQR 33
Score = 29.4 bits (67), Expect = 0.059
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC EC +VFT + L H +R H KP S
Sbjct: 10 EKP-YKCN---ECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-10
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP++C +C KSF +H R+HTGE P
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 44.8 bits (107), Expect = 7e-08
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C C +F +S L H+R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQR 33
Score = 27.1 bits (61), Expect = 0.42
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +C EC + F+ + L +H +R H E P S
Sbjct: 10 EKP-HECR---ECGKSFSFNSQLIVH-QRIHTGENPSGPS 44
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-10
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP++C +C K F H RVHTGEKP
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-08
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKP+ CE C F +S L H+R
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQR 33
Score = 31.0 bits (71), Expect = 0.012
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P FKCE EC + FT + L+ H +R H EKP S
Sbjct: 10 EKP-FKCE---ECGKRFTQNSQLHSH-QRVHTGEKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 2e-10
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C +C K F H +HTGEKP
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 2e-08
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C FR +SHL RH+
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
Score = 27.8 bits (63), Expect = 0.22
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P +KC EC +VF + L H + H EKP S
Sbjct: 10 EKP-YKCH---ECGKVFRRNSHLARH-QLIHTGEKPSGPSS 45
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 2e-10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K+F H R+HTGEKP
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 5e-08
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F +S L RH+R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQR 33
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C +C K+F H R+HTG++P
Sbjct: 4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 44.9 bits (107), Expect = 7e-08
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F +S +H+R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-10
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP+QC +C K F H RVHTGEKP
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-08
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKP+ CE C F +SHL H+R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR 33
Score = 29.1 bits (66), Expect = 0.061
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P F+CE EC + FT + L+ H +R H EKP S
Sbjct: 10 EKP-FQCE---ECGKRFTQNSHLHSH-QRVHTGEKPSGPS 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 51.0 bits (123), Expect = 3e-10
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
K +QC +C + F K H R+HTGEKP
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-07
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+ K + C C F SHL +H+R
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 29.4 bits (67), Expect = 0.050
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
+ +C EC R FT ++ LN H +R H EKP S
Sbjct: 10 TKS-HQCH---ECGRGFTLKSHLNQH-QRIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
E+P++C++C KSF H R+HTGEKP
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-08
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE+P+ C C +F S+HL +H+R
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQR 33
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 3e-10
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+P++C++C K F + H R+H+ EK
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 44.1 bits (105), Expect = 2e-07
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GE+P+ C C F SHL H R
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLR 33
Score = 30.6 bits (70), Expect = 0.019
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
ERP FKC EC + F R+ L H R H +EK S
Sbjct: 10 ERP-FKCN---ECGKGFGRRSHLAGH-LRLHSREKSSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.6 bits (122), Expect = 4e-10
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E PY+C +C K F K H + H+G+ +
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.3 bits (98), Expect = 2e-06
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGE PY C C F L H++
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 51.9 bits (124), Expect = 4e-10
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 51 ECDRVFTTRNMLNIHIKRDHQKEKPYQ--------CSQCSKSFFSKYDHKIHSRVHTGEK 102
CDR F+T + L H+ +H C + KSF +KY H RVHTGEK
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 103 PYAC 106
Sbjct: 90 SGPS 93
Score = 33.8 bits (77), Expect = 0.004
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIH-SRVHTGEKPYACEFCP--------LTFRHSSHLF 120
+ + C ++F + ++ H + H G C +F+ L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 121 RHRRS 125
H R
Sbjct: 80 NHIRV 84
Score = 29.2 bits (65), Expect = 0.14
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 97 VHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
+ + + C TF L H H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K F H RVHTG KP
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F +SHL RHRR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR 33
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.7 bits (122), Expect = 4e-10
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EK + C +C K+F +IH RVH GEK
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 43.3 bits (103), Expect = 3e-07
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEK + C+ C F + S L H+R
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR 33
Score = 25.2 bits (56), Expect = 1.6
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+ C+ EC + F + L IH +R H EK S
Sbjct: 10 EKS-HTCD---ECGKNFCYISALRIH-QRVHMGEKCSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 50.6 bits (122), Expect = 5e-10
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C +C K+F H RVHTGEKP
Sbjct: 4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C+ C F ++HL +H+R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQR 33
Score = 27.1 bits (61), Expect = 0.43
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P ++C EC + F+ L H +R H EKP S
Sbjct: 10 EKP-YEC---KECGKAFSQTTHLIQH-QRVHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 5e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP++C +C K+F H R+HTGEKP
Sbjct: 4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-08
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKP+ C+ C FR + HL H R
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLR 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 50.6 bits (122), Expect = 5e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EK Y+C++C K F H ++HTGEKP
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 7e-08
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEK Y C C F +S L +H++
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQK 33
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 5e-10
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY C C K+F + H R+HTGEKP
Sbjct: 4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-08
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKPY C++C F S+ L RH+R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQR 33
Score = 29.0 bits (66), Expect = 0.065
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P + C+ C + F L H +R H EKP S
Sbjct: 10 EKP-YVCD---YCGKAFGLSAELVRH-QRIHTGEKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 5e-10
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C++C K F H R+HTGEKP
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 3e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKPY C C F +SHL H R
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR 33
Score = 29.8 bits (68), Expect = 0.039
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC EC +VFT + L H R H EKP S
Sbjct: 10 EKP-YKCN---ECGKVFTQNSHLTNH-WRIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 6e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K F H +HTGEKP
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-08
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F +SHL RHR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG 33
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.2 bits (121), Expect = 6e-10
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
EKPY+C C F + H +HTG P +
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 46.0 bits (110), Expect = 3e-08
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S GEKPY CE C F +HL H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.3 bits (121), Expect = 6e-10
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP+QC +C +F H R H P
Sbjct: 4 GSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 44.9 bits (107), Expect = 6e-08
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
TGEKP+ C+ C + F S LF+H RS
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 27.5 bits (62), Expect = 0.23
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P F+C+ EC F+ L H R H++ P S
Sbjct: 10 EKP-FQCK---ECGMNFSWSCSLFKH-LRSHERTDPSGPSS 45
Score = 23.3 bits (51), Expect = 9.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 12 FTCQVCSKIFSYENGLKAHVR 32
F C+ C FS+ L H+R
Sbjct: 13 FQCKECGMNFSWSCSLFKHLR 33
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 7e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+C++C K F H +HTGEKP
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 45.5 bits (109), Expect = 4e-08
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C C F +SHL RHR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG 33
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 8e-10
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKP++C +C KS+ + H RVHTGEKP
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKP+ C C ++ HL +H+R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQR 33
Score = 29.0 bits (66), Expect = 0.076
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P FKC GEC + + R L H +R H EKP S
Sbjct: 10 EKP-FKC---GECGKSYNQRVHLTQH-QRVHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 9e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKPY+CS+C K+F H R+HTG +P
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 46.3 bits (111), Expect = 2e-08
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GEKPY C C F +HL HRR
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR 33
Score = 30.9 bits (71), Expect = 0.015
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQ 80
E+P +KC EC + F LN H +R H +P S
Sbjct: 10 EKP-YKCS---ECGKAFHRHTHLNEH-RRIHTGYRPSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 49.5 bits (119), Expect = 1e-09
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
TG+KPY C C F ++ L RH R H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 47.6 bits (114), Expect = 8e-09
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSR-VHTGEKPYAC 106
+KPY+C +C K+F H R HTGEKP
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 29.1 bits (66), Expect = 0.082
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
++P ++C EC + F L H + H EKP S
Sbjct: 10 KKP-YECI---ECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 2e-09
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY+C C K+F H VH+GE+P
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.5 bits (114), Expect = 8e-09
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
TGEKPY C+ C FR SSHL +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
Score = 27.5 bits (62), Expect = 0.28
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
E+P +KC+ C + F + L H H E+P S
Sbjct: 10 EKP-YKCQ---VCGKAFRVSSHLVQH-HSVHSGERPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 4e-09
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
E+PY C++C K+F H + H EK
Sbjct: 4 GSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 43.7 bits (104), Expect = 2e-07
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+GE+PY C C F SHL H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 28.6 bits (65), Expect = 0.097
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCS 79
ERP + C EC + F + L H + H +EK S
Sbjct: 10 ERP-YGCN---ECGKNFGRHSHLIEH-LKRHFREKSSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.5 bits (110), Expect = 2e-08
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFC 109
+ K C C K F Y H H+GEKPY+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.004
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 96 RVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
K ACE C FR HL RH+ S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
Score = 31.1 bits (70), Expect = 0.012
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 37 SSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCS 82
S R + CE C ++F LN H K H EKPY S
Sbjct: 6 SGRTRKQVACE---ICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSS 47
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.5 bits (107), Expect = 7e-08
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 76 YQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
Y C +C K H R HT +PY C +C +F+ +L +H +S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 41.6 bits (97), Expect = 2e-06
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 43 RFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
++ CE EC +ML HI R H +PY C+ C+ SF +K + H + K
Sbjct: 1 KYICE---ECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 45.0 bits (107), Expect = 7e-08
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 67 KRDHQKEKPYQCSQ--CSKSFFSKYDHKIHSRVHTGEKPYACE 107
EKP+ C+ C F + H R H+G KP
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 40.7 bits (96), Expect = 3e-06
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 94 HSRVHTGEKPYACEF--CPLTFRHSSHLFRHRR 124
TGEKP+AC + C F S L RHRR
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.6 bits (106), Expect = 1e-07
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 95 SRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
S +GEKPY+C C TF ++ L +H++
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQK 31
Score = 43.5 bits (103), Expect = 2e-07
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
EKPY C++C ++F H ++HT + +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.7 bits (104), Expect = 2e-07
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
T K Y C C F HL RH++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 41.0 bits (97), Expect = 2e-06
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYAC 106
K Y C++C K+F + H ++HT + +
Sbjct: 4 GSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.4 bits (95), Expect = 3e-06
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+R TG KP+ C C +F S HL HR+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 30.4 bits (69), Expect = 0.020
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDH-KIHSRVH 98
R KP+QC C +S FS+ DH +H + H
Sbjct: 4 RGSTGIKPFQCPDCDRS-FSRSDHLALHRKRH 34
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 40.4 bits (94), Expect = 7e-06
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
++ H ++ +CS+C F I + K CE C + L +
Sbjct: 10 QKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEG 60
Score = 36.2 bits (83), Expect = 3e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
++H G++ C C + F S L R +
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP 40
Score = 36.2 bits (83), Expect = 3e-04
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYA 105
+ K C +C K + +G+K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 40.9 bits (95), Expect = 1e-05
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 43 RFKCEGRGECDRVFTTRNMLNIHIKRD-HQKEKPYQCSQCSKSFFSKYDHK---IHSRVH 98
+F+C+ +C + T L +H+ H ++ ++ + +SK +
Sbjct: 19 KFRCK---DCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 99 TGEKPYACEFCPLTFRHSSHLFRHRRSLHQMYE 131
+K C +C +F L H +
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 37.1 bits (85), Expect = 3e-04
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 87 SKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
S K++ + TG + C+ C + L H
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 37.1 bits (85), Expect = 3e-04
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
F C+ CS + L H+ ++ + + + L +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDD--NHETDNNNPKRWSKPRKRSLLEM-EGKED 76
Query: 72 KEKPYQCSQCSKSFFSKYDHKIH--SRVHTGEKPY 104
+K +C C SF S D +H H +
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.1 bits (90), Expect = 4e-05
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 32 RNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKYDH 91
+ E + ++C C+ ++ H + C CS FFS +
Sbjct: 5 SSGASPVENKEVYQCR---LCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSP-EL 57
Query: 92 KIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
K K C C TF+ S ++RH+ +H
Sbjct: 58 KQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 33.0 bits (74), Expect = 0.009
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
V+ C++C+ S +H R R C C F + + H
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHER------LCRNAAVCP---YCSLRFFSPELKQEH--ESK 64
Query: 71 QKEKPYQCSQCSKSFFSKYDHKIH 94
+ K C +C ++F S + H
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRH 88
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (87), Expect = 4e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKP 103
E P++CS+C + F + H R H +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 35.2 bits (81), Expect = 3e-04
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 94 HSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
GE P+ C C F ++L +H R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 23.3 bits (50), Expect = 8.2
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 40 ERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQKEKP 75
E P FKC +CDRVFT RN L H +R H ++
Sbjct: 10 ENP-FKCS---KCDRVFTQRNYLVQH-ERTHARKSG 40
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.8 bits (89), Expect = 9e-05
Identities = 13/60 (21%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 68 RDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSLH 127
+ + C C F S K H R E C C F + H H
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 26.0 bits (56), Expect = 3.1
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 8 HRVVFTCQVCSKIFSYENGLKAHVRNKHG 36
C VC K F+ + HV KH
Sbjct: 97 TEHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 25.3 bits (54), Expect = 5.5
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
F C +C FS LK H+R + C C + FT+ + H+ + H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHT------KVCP---VCKKEFTSTDSALDHVCKKH 124
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 35.6 bits (81), Expect = 0.002
Identities = 7/56 (12%), Positives = 9/56 (16%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRS 125
+ S + Y C C L H S
Sbjct: 147 QKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS 202
Score = 34.4 bits (78), Expect = 0.006
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVH 98
YQC CS FS D H H
Sbjct: 172 PPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 0.26
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKH 35
+ C VCS + L AHV +
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHG 204
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.0 bits (77), Expect = 0.003
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDHQ 71
+ C+ C+ N HV ++H + + C EC+ + + L+ H + H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV---ECNFLTKRYDALSEHNLKYHP 75
Query: 72 KEKPYQCS 79
E+ ++ +
Sbjct: 76 GEENFKLT 83
Score = 26.3 bits (57), Expect = 1.8
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 63 NIHIKRDHQKEKPYQCSQCSKSFFSKYDHKIH-SRVHTG---EKPYACEFCPLTFRHSSH 118
+ H +++ + E Y+C C+ H H Y C C +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 119 LFRHRRSLH 127
L H H
Sbjct: 66 LSEHNLKYH 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.009
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 49/113 (43%)
Query: 27 LKAHVR--NKHGSSEER--------PR-FKCEG-----RGECDRVFTTRNMLNIHIKRDH 70
++ +V N H + ++ + G G LN+ +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-----------LNLTL---- 393
Query: 71 QKEK-PYQCSQCSKSFFSKYDHKIHSRVHTGEKP-YACEFCPLT--FRHSSHL 119
+K K P Q S+ FS+ K ++ F P+ F HS L
Sbjct: 394 RKAKAPSGLDQ-SRIPFSE------------RKLKFSNRFLPVASPF-HSHLL 432
Score = 30.0 bits (67), Expect = 0.23
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 24/82 (29%)
Query: 65 HIKRDHQKEKPYQCSQCSK----SFFSKY--DHKIHSRVHT--GEKP------------Y 104
++ + K Q Q F + Y + IH+ E Y
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 105 --ACEFC--PLTFRHSSHLFRH 122
A P + +S LFR
Sbjct: 127 ITARIMAKRPFDKKSNSALFRA 148
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 30.7 bits (70), Expect = 0.014
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 74 KPYQCS--QCSKSFFSKYDHKIHSRVHTGEK 102
+P+ C+ C K F + + H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.6 bits (57), Expect = 0.92
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 102 KPYAC--EFCPLTFRHSSHLFRHRRS 125
+P+ C +C F S L RH+R+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.0 bits (69), Expect = 0.015
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KPY+C QCS + K + +H R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 29.6 bits (67), Expect = 0.038
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 69 DHQKEKPYQCS--QCSKSFFSKYDHKIHSRVHTGEK 102
D K+K + C C K + + H R HTGE+
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.2 bits (66), Expect = 0.043
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
+ + C C+++F + K H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.7 bits (62), Expect = 0.20
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 102 KPYACEFCPLTFRHSSHLFRHRRS 125
+ + CE C F HL RH RS
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.3 bits (65), Expect = 0.046
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KPY C C + F + H R+HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.052
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHG 36
+ C VC+ FS + L H+R+ H
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHR 141
Score = 27.9 bits (61), Expect = 1.4
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 71 QKEKPYQCSQCSKSFFSKYDHKIHSR 96
Y C+ C+ F + H R
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLR 137
Score = 27.1 bits (59), Expect = 2.3
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 102 KPYACEFCPLTFRHSSHLFRHRRSLHQM 129
Y C C F S L H RS H+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRD 142
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (65), Expect = 0.059
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 72 KEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
+EK +QC +C + FF H +H G+K
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.13
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 18/45 (40%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCP-LTFRHS 116
EK Q K K+ + + K YA + P L + +
Sbjct: 18 EK-----QALK--------KLQASL----KLYADDSAPALAIKAT 45
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 27.6 bits (60), Expect = 0.24
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 98 HTGEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
+GEKPY+C C L F+ + H RS
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.0 bits (56), Expect = 1.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTG 100
EKPY C C F K H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.4 bits (65), Expect = 0.25
Identities = 9/55 (16%), Positives = 14/55 (25%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRR 124
+ + + K S IH + GEK E + L
Sbjct: 175 GEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 26.7 bits (58), Expect = 2.5
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
+ + EK Q + + + D + + +
Sbjct: 200 RNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.27
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 11 VFTCQVCSKIFSYENGLKAHVR 32
+FTC+ C+K+F +++ L+AH+R
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLR 30
Score = 26.0 bits (56), Expect = 0.97
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
K + C C+K F K+ + H R+HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.8 bits (63), Expect = 0.28
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 36 GSSEERPRFKCEGRGE-----CDRVF-TTRNMLNIHIKRDHQKEKPYQCSQCSKSFFSKY 89
G EE+ + RGE C+ V T L H++ + + +C C K F SK
Sbjct: 9 GGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKA 68
Query: 90 DHKIHSRVHTGEKP 103
H+ KP
Sbjct: 69 GLNYHTMAEHSAKP 82
Score = 27.2 bits (59), Expect = 0.82
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 11 VFTCQVCSKIFSYENGLKAHVRNKHGSS 38
CQ C K F + GL H +H +
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 26.1 bits (56), Expect = 2.1
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 12 FTCQVCSKIFSYE-NGLKAHVRNKHGSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
C C+ + GLK H+ + + KC+ C + F ++ LN H +H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQ---KLQDALKCQH---CRKQFKSKAGLNYHTMAEH 78
Query: 71 QKEKP 75
+
Sbjct: 79 SAKPS 83
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.1 bits (59), Expect = 0.32
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTG 100
+PY CS C K F K+ + H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 0.55
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
++P+ C C +F +K + H +VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.7 bits (53), Expect = 2.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 98 HTGEKPYACEFCPLTFRHSSHLFRHRR 124
+G++P+ C C F ++ RH +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 0.56
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 HQKEKPYQCSQCSKSFFSKYDHKIHSRVHT 99
QKEK ++C++C K+F H R+HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.2 bits (54), Expect = 2.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 98 HTGEKPYACEFCPLTFRHSSHLFRHRR 124
EK + C C TF S +L +H R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHER 33
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 0.67
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 11 VFTCQVCSKIFSYENGLKAHVRNKHGSSEERP 42
+FTC C K G+K HV H S P
Sbjct: 62 MFTCHHCGKQLRSLAGMKYHVMANHNSLPSGP 93
Score = 26.0 bits (56), Expect = 2.5
Identities = 7/61 (11%), Positives = 17/61 (27%)
Query: 67 KRDHQKEKPYQCSQCSKSFFSKYDHKIHSRVHTGEKPYACEFCPLTFRHSSHLFRHRRSL 126
+ + C C + + ++ + C C R + + H +
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 127 H 127
H
Sbjct: 86 H 86
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.0 bits (57), Expect = 0.78
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 102 KPYACEFCPLTFRHSSHLFRHRRSLHQ 128
K YAC C F L RH + +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 26.7 bits (58), Expect = 0.90
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 11 VFTCQVCSKIFSYENGLKAHVRNKHGSS 38
+ C +C K+F+ N L+ H +HG +
Sbjct: 13 ILPCGLCGKVFTDANRLRQH-EAQHGVT 39
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 1.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KP QC C K+F H R HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.5 bits (55), Expect = 1.9
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSEERP 42
+ C +C K + GL H + H + EE
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A
{Escherichia coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 26.7 bits (60), Expect = 2.2
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 43 RFKCEGRGECDRVFTTR 59
F V+TTR
Sbjct: 16 TFNVNDYDNTLTVYTTR 32
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 26.5 bits (59), Expect = 2.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 20 IFSYENGLKAHVRNKHGSSEERPRF 44
Y + LK V+ H + PRF
Sbjct: 213 DLHYGSKLKVKVKTNHSVASPYPRF 237
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.0 bits (54), Expect = 2.9
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 17 CSKIFSYENGLKAHVRNKH---GSSEERPRFKCEGRGECDRVFTTRNMLNIHIKRDH 70
C + S L+ H+ H C CD + + HI H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWED-CDFLGDDTASIVNHINAQH 64
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 25.7 bits (56), Expect = 3.6
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 100 GEKPYACEFCPLTFRHSSHLFRHRRSLHQ 128
G + C FC F + F H + HQ
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ 40
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.5 bits (52), Expect = 3.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 73 EKPYQCSQCSKSFFSKYDHKIHSRVHTGE 101
+ +C +C K F H +H GE
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.1 bits (51), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 74 KPYQCSQCSKSFFSKYDHKIHSRVHTGEK 102
KP++CS C + SK + K H H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 26.0 bits (58), Expect = 4.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 43 RFKCEGRGECDRVFTTR 59
F EG+ VFTTR
Sbjct: 233 LFPVEGKEVRIPVFTTR 249
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.1 bits (52), Expect = 4.8
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 71 QKEKPYQC--SQCSKSFFSKYDHKIHSRVHTGEK 102
+K ++C C+K+F +Y+ + H + H ++
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.0 bits (51), Expect = 5.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKHGSSE 39
+ C +C K F L++H+R HG+++
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.7 bits (50), Expect = 5.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 12 FTCQVCSKIFSYENGLKAHVRNKH 35
++C VC K FS + +K+H++ H
Sbjct: 10 YSCPVCEKSFSEDRLIKSHIKTNH 33
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI,
protein structure initiat midwest center for structural
genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Length = 310
Score = 25.3 bits (55), Expect = 7.3
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 12 FTCQVCSKIFSYENGLKAH----VRNKHGSSEERPRF 44
F + SK+ + L+ V++K G+ F
Sbjct: 62 FALESISKVCTLALALEDVGPQAVQDKIGADPTGLPF 98
>1xfj_A Conserved hypothetical protein; structural genomics, protein
structure initiative (PSI), HYP protein,
alpha-beta-BETA-alpha; 1.75A {Caulobacter vibrioides}
SCOP: d.194.1.2
Length = 261
Score = 24.9 bits (55), Expect = 8.6
Identities = 4/25 (16%), Positives = 6/25 (24%), Gaps = 2/25 (8%)
Query: 104 YACEFCPLTFRHSSHLFRHRRSLHQ 128
T F +RR+
Sbjct: 223 EWVGRD--TRAEEEWFFSNRRAFLN 245
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 25.2 bits (54), Expect = 8.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 14 CQVCSKIFSYENGLKAHVRNKH 35
C CS+ F + ++H+ K
Sbjct: 295 CPFCSRWFKTSSVFESHLVGKI 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 9.1
Identities = 14/70 (20%), Positives = 17/70 (24%), Gaps = 17/70 (24%)
Query: 52 CDRVFTTRNMLNI---------HIKRDHQKEKPYQCSQCSKSFFSKY-DHKIHSRVHTGE 101
C + TTR HI DH + KS KY D +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDE-VKSLLLKYLDCRPQD-----L 318
Query: 102 KPYACEFCPL 111
P
Sbjct: 319 PREVLTTNPR 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.135 0.440
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,951,414
Number of extensions: 99090
Number of successful extensions: 1320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 552
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.4 bits)