BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy663
         (275 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UYX2|SYFB_PYRAB Phenylalanine--tRNA ligase beta subunit OS=Pyrococcus abyssi
           (strain GE5 / Orsay) GN=pheT PE=3 SV=1
          Length = 556

 Score = 33.1 bits (74), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 47  GALRSSPVVSLYVDSGVPPLTLRRSKLMLNYVAKISASPFNPAQ-KLLYHQDMSGIIFTV 105
           G +RS  V+    +   P LT +R ++ LNY+ K+S       + K L  + M  +    
Sbjct: 259 GKIRSVKVIYKDFEIVTPDLTPKRFEVELNYIRKLSGLDLKDEEIKELLERMMYSVELED 318

Query: 106 NKPKPLYIRFR-EVANFNNVLESSEVA 131
            K K LY  FR ++ +  +VLE   +A
Sbjct: 319 GKAKLLYPAFRDDIMHARDVLEDVLIA 345


>sp|Q10094|YAOF_SCHPO Uncharacterized protein C11D3.15 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC11D3.15 PE=3 SV=1
          Length = 1317

 Score = 31.2 bits (69), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 55  VSLYVDSGVPPLTLRRSKLMLNYVAKISASPFNPAQKLLYHQDMSGII------FTVNKP 108
           V   +D   P L + RS  ++  + K+         + LY +  + I       FT    
Sbjct: 149 VKTTIDGSDPSLVVGRSGEVVRIMKKVDCDALRKDLQALYDEGFTSIAVCLAHSFTFPDH 208

Query: 109 KPLYIRFREVANFNNVLESSEVAPYVRFVP 138
           + L  +  E   F+N+  S+++ P +++VP
Sbjct: 209 ELLVGKIAEEVGFSNISLSTKLMPMIKYVP 238


>sp|P31005|MEDH_BACMT NAD-dependent methanol dehydrogenase OS=Bacillus methanolicus
           GN=mdh PE=1 SV=3
          Length = 381

 Score = 31.2 bits (69), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 40  AGIRIATGALRSSPVVSLYVDSGVPPLT----LRRSKLMLNYVAKISASP--FNPAQKLL 93
           AG+ IATG    S  +  YV  G  P+T    ++  KL+  Y+ K  A+       + + 
Sbjct: 183 AGLTIATGMDALSHAIEAYVAKGATPVTDAFAIQAMKLINEYLPKAVANGEDIEAREAMA 242

Query: 94  YHQDMSGIIF 103
           Y Q M+G+ F
Sbjct: 243 YAQYMAGVAF 252


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,458,135
Number of Sequences: 539616
Number of extensions: 3588916
Number of successful extensions: 7698
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7698
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)