Query psy663
Match_columns 275
No_of_seqs 136 out of 281
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:05:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.2 4.1E-11 1.4E-15 98.4 9.8 76 177-252 5-88 (154)
2 3hst_B Protein RV2228C/MT2287; 99.1 1.6E-10 5.6E-15 92.6 9.4 92 179-271 3-104 (141)
3 3u3g_D Ribonuclease H, RNAse H 99.1 1.2E-10 4.1E-15 92.9 8.5 92 179-270 3-106 (140)
4 3h08_A RNH (ribonuclease H); R 99.1 1.5E-10 5E-15 94.1 7.2 72 178-252 3-80 (146)
5 2kq2_A Ribonuclease H-related 99.0 2E-10 7E-15 93.8 3.6 93 176-269 3-105 (147)
6 3p1g_A Xenotropic murine leuke 99.0 1.6E-09 5.4E-14 90.3 9.0 71 178-251 22-97 (165)
7 2ehg_A Ribonuclease HI; RNAse 99.0 2.2E-09 7.4E-14 87.2 9.1 74 180-253 2-87 (149)
8 2e4l_A Ribonuclease HI, RNAse 99.0 1.1E-09 3.7E-14 90.4 7.2 72 178-252 5-82 (158)
9 1jl1_A Ribonuclease HI; RNAse 98.9 9.4E-10 3.2E-14 90.5 6.4 71 179-252 4-80 (155)
10 1ril_A Ribonuclease H; hydrola 98.9 1.9E-09 6.5E-14 89.7 6.6 72 178-252 7-84 (166)
11 3qio_A GAG-POL polyprotein; RN 98.9 5.4E-09 1.8E-13 85.7 8.6 73 176-253 9-84 (150)
12 2zd1_A Reverse transcriptase/r 98.7 4.9E-08 1.7E-12 95.6 9.9 85 178-267 438-527 (557)
13 1zbf_A Ribonuclease H-related 98.6 7E-08 2.4E-12 78.4 7.7 76 177-254 9-90 (142)
14 1mu2_A HIV-2 RT; HIV-2 reverse 98.6 1.2E-07 4E-12 92.8 10.1 86 177-267 434-524 (555)
15 4htu_A Ribonuclease H, RNAse H 98.6 1.2E-07 4.1E-12 76.2 8.1 76 177-254 3-84 (134)
16 2lsn_A Reverse transcriptase; 98.6 1E-07 3.6E-12 79.3 6.8 74 178-252 6-93 (165)
17 1rw3_A POL polyprotein; RNA an 88.5 0.15 5E-06 48.1 1.6 73 178-254 345-429 (455)
18 2zd1_B P51 RT; P51/P66, hetero 61.5 10 0.00035 35.2 5.4 69 177-246 322-399 (428)
19 2fr5_A Cytidine deaminase; tet 47.0 36 0.0012 26.8 5.7 52 191-243 36-91 (146)
20 1uwz_A Cytidine deaminase; CDD 32.9 84 0.0029 24.2 5.7 51 192-243 25-79 (136)
21 2d30_A Cytidine deaminase; pur 31.6 77 0.0026 24.8 5.3 52 192-244 34-89 (141)
22 1r5t_A Cytidine deaminase; zin 25.6 1.4E+02 0.0047 23.2 5.8 52 191-243 32-88 (142)
23 3mpz_A Cytidine deaminase; ssg 25.6 99 0.0034 24.5 4.9 51 192-243 47-101 (150)
24 2yhb_A QDE-2, post-transcripti 22.7 1.6E+02 0.0055 27.3 6.6 37 175-230 234-270 (437)
25 2b3j_A TRNA adenosine deaminas 22.3 1.4E+02 0.0048 23.4 5.3 39 191-229 27-69 (159)
26 2yha_A Post-transcriptional ge 21.4 1.5E+02 0.0052 26.9 6.0 37 175-230 234-270 (388)
27 2grg_A Hypothetical protein; Y 21.1 47 0.0016 25.1 2.0 15 178-192 97-111 (120)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.22 E-value=4.1e-11 Score=98.39 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCceEEEecCCCCCCc-----eeEEEEeCcc---eeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHH
Q psy663 177 ANHTICYTDGSKSPDV-----TGCAFSIGDM---VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALA 248 (275)
Q Consensus 177 ~~~~~IyTDGSk~~~~-----~G~a~~~~~~---~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~ 248 (275)
.+.+.||||||...++ .|+|++..+. ..+..++..+|.+.||+.|+..||+.+......++.|+|||+.++.
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 4678999999987543 7888876431 2345666678999999999999999998877789999999999999
Q ss_pred HHhC
Q psy663 249 ALAN 252 (275)
Q Consensus 249 al~n 252 (275)
.|..
T Consensus 85 ~i~~ 88 (154)
T 2qkb_A 85 GITN 88 (154)
T ss_dssp HHHT
T ss_pred hhhh
Confidence 9986
No 2
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.14 E-value=1.6e-10 Score=92.56 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=68.3
Q ss_pred ceEEEecCCCCCC--ceeEEEEe--Cc---c--eeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHH
Q psy663 179 HTICYTDGSKSPD--VTGCAFSI--GD---M--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAA 249 (275)
Q Consensus 179 ~~~IyTDGSk~~~--~~G~a~~~--~~---~--~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~a 249 (275)
.+.||||||...+ ..|+|++. .+ . ..+..+ ..+|.+.||+.|+..||+++.+.+..+++|++||+.++..
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5799999998754 47888764 22 1 112223 4789999999999999999988778899999999999999
Q ss_pred HhCC-CCCCHHHHHHHHHHHHHH
Q psy663 250 LANV-KFSNPLVTKVFSTWRYLK 271 (275)
Q Consensus 250 l~n~-~~~~~i~~~I~~~~~~l~ 271 (275)
+... ...++....++..+..|.
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~ 104 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALA 104 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHH
Confidence 9874 344554555666555543
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.14 E-value=1.2e-10 Score=92.91 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=65.5
Q ss_pred ceEEEecCCCCCC--ceeEEEEeCc----ce-eeeecCCccchhHHHHHHHHHHHHHHHcCCCC----eEEEEeccHHHH
Q psy663 179 HTICYTDGSKSPD--VTGCAFSIGD----MV-RSTLLNPINSIFSAELIAIFLCLEAILENPSD----QFLIVSDSRSAL 247 (275)
Q Consensus 179 ~~~IyTDGSk~~~--~~G~a~~~~~----~~-~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~----~~~I~sDS~sal 247 (275)
.+.||||||...+ ..|+|++..+ .. ........+|.+.||+.|+..||+++.+.+.. +++|+|||+.++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi 82 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIV 82 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHH
Confidence 5899999998764 3788876522 11 11122235799999999999999999876655 999999999999
Q ss_pred HHHhCCCC-CCHHHHHHHHHHHHH
Q psy663 248 AALANVKF-SNPLVTKVFSTWRYL 270 (275)
Q Consensus 248 ~al~n~~~-~~~i~~~I~~~~~~l 270 (275)
..+..... .+.-...++..+..|
T Consensus 83 ~~i~~~~~~~~~~l~~~~~~i~~l 106 (140)
T 3u3g_D 83 RQMQGVYKVKEPTLKEKFAKIAHI 106 (140)
T ss_dssp HHHTTSSCCCCGGGHHHHHHHHHH
T ss_pred HHhCCCcccCCHHHHHHHHHHHHH
Confidence 99987542 343333445555444
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.09 E-value=1.5e-10 Score=94.12 Aligned_cols=72 Identities=28% Similarity=0.292 Sum_probs=56.5
Q ss_pred CceEEEecCCCCCCc--eeEEEEe--Ccce--eeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy663 178 NHTICYTDGSKSPDV--TGCAFSI--GDMV--RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (275)
Q Consensus 178 ~~~~IyTDGSk~~~~--~G~a~~~--~~~~--~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~ 251 (275)
+.+.||||||...++ .|+|++. ++.. .+..+ ..+|...||+.|+..||+.+.+ ..++.|+|||+.++..|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 468999999977653 7888764 3221 12223 4678999999999999999865 579999999999999998
Q ss_pred C
Q psy663 252 N 252 (275)
Q Consensus 252 n 252 (275)
.
T Consensus 80 ~ 80 (146)
T 3h08_A 80 E 80 (146)
T ss_dssp S
T ss_pred H
Confidence 7
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.98 E-value=2e-10 Score=93.76 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=64.1
Q ss_pred cCCceEEEecCCCCCCceeEEEEe--Ccce--eee-ec--CC--ccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHH
Q psy663 176 YANHTICYTDGSKSPDVTGCAFSI--GDMV--RST-LL--NP--INSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSA 246 (275)
Q Consensus 176 ~~~~~~IyTDGSk~~~~~G~a~~~--~~~~--~~~-~l--~~--~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sa 246 (275)
+++.+.||||||...+..|+|++. .+.. .+. .. +. .++++.||+.|+..||+++.+.+. ++.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 346789999999988668999765 2221 222 22 22 368999999999999999876555 99999999987
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHH
Q psy663 247 LAALANVK-FSNPLVTKVFSTWRY 269 (275)
Q Consensus 247 l~al~n~~-~~~~i~~~I~~~~~~ 269 (275)
..-+.+.. ...+..+..++.+++
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~ 105 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQ 105 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGG
T ss_pred HHHHhCCCccCCcchHHHHHHHHH
Confidence 77665432 333344444444443
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=98.98 E-value=1.6e-09 Score=90.31 Aligned_cols=71 Identities=25% Similarity=0.242 Sum_probs=55.1
Q ss_pred CceEEEecCCCCC--CceeEEEEe--Ccc-eeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy663 178 NHTICYTDGSKSP--DVTGCAFSI--GDM-VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (275)
Q Consensus 178 ~~~~IyTDGSk~~--~~~G~a~~~--~~~-~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~ 251 (275)
..+.||||||... +..|+|++. ++. .....+...+|++.||+.|+..||+++ ...++.|+|||+.++..|-
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw 97 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAH 97 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHH
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhh
Confidence 3589999999873 336676543 332 222256678899999999999999998 3689999999999999994
No 7
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.96 E-value=2.2e-09 Score=87.24 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred eEEEecCCCC-C--CceeE-EEEeC--cc-eeee--ecC---CccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHH
Q psy663 180 TICYTDGSKS-P--DVTGC-AFSIG--DM-VRST--LLN---PINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSAL 247 (275)
Q Consensus 180 ~~IyTDGSk~-~--~~~G~-a~~~~--~~-~~~~--~l~---~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal 247 (275)
+.||||||.. . +..|+ |++.. +. ...+ .++ +.+|.+.||+.|+..||+.+......++.|++||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999987 2 44775 76542 21 1222 222 37889999999999999999887778999999999999
Q ss_pred HHHhCC
Q psy663 248 AALANV 253 (275)
Q Consensus 248 ~al~n~ 253 (275)
..+..+
T Consensus 82 ~~i~~~ 87 (149)
T 2ehg_A 82 KQMNGE 87 (149)
T ss_dssp HHHTTS
T ss_pred HHHhCc
Confidence 999876
No 8
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.96 E-value=1.1e-09 Score=90.42 Aligned_cols=72 Identities=22% Similarity=0.245 Sum_probs=55.8
Q ss_pred CceEEEecCCCCCC-c-eeEEEEe--Ccce--eeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy663 178 NHTICYTDGSKSPD-V-TGCAFSI--GDMV--RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (275)
Q Consensus 178 ~~~~IyTDGSk~~~-~-~G~a~~~--~~~~--~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~ 251 (275)
..+.||||||...+ + .|+|++. .+.. .+..+ +.+|.+.||+.|+..||+.+.. ..++.|+|||+.++..|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46899999998754 3 7888765 2221 12233 3578999999999999998754 389999999999999998
Q ss_pred C
Q psy663 252 N 252 (275)
Q Consensus 252 n 252 (275)
.
T Consensus 82 ~ 82 (158)
T 2e4l_A 82 T 82 (158)
T ss_dssp T
T ss_pred H
Confidence 7
No 9
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.94 E-value=9.4e-10 Score=90.47 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=55.7
Q ss_pred ceEEEecCCCCCC-c-eeEEEEeC--cc--eeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhC
Q psy663 179 HTICYTDGSKSPD-V-TGCAFSIG--DM--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN 252 (275)
Q Consensus 179 ~~~IyTDGSk~~~-~-~G~a~~~~--~~--~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n 252 (275)
.+.||||||...+ + .|+|++.. +. ..+..+ ..+|.+.||+.|+..||+.+.+ ..++.|+|||+.++..|..
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 5899999998764 3 78887652 22 122233 4678999999999999999865 3799999999999999986
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.90 E-value=1.9e-09 Score=89.75 Aligned_cols=72 Identities=21% Similarity=0.087 Sum_probs=55.6
Q ss_pred CceEEEecCCCCCC-c-eeEEEEeC--cce--eeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHh
Q psy663 178 NHTICYTDGSKSPD-V-TGCAFSIG--DMV--RSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALA 251 (275)
Q Consensus 178 ~~~~IyTDGSk~~~-~-~G~a~~~~--~~~--~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~ 251 (275)
..+.||||||...+ + .|+|++.. +.. .+... ..+|.+.||+.|+..||+.+... .++.|+|||+.++..|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 46899999998865 3 78887753 221 11122 46789999999999999987543 58999999999999998
Q ss_pred C
Q psy663 252 N 252 (275)
Q Consensus 252 n 252 (275)
.
T Consensus 84 ~ 84 (166)
T 1ril_A 84 E 84 (166)
T ss_dssp S
T ss_pred h
Confidence 8
No 11
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.88 E-value=5.4e-09 Score=85.66 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=56.6
Q ss_pred cCCceEEEecCCCCCCc--eeEEEEeCc-ceeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhC
Q psy663 176 YANHTICYTDGSKSPDV--TGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN 252 (275)
Q Consensus 176 ~~~~~~IyTDGSk~~~~--~G~a~~~~~-~~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n 252 (275)
..+.+.||||||...+. .|+|++..+ ....+.+ ..+|...||+.|+..||+.+ ..++.|+|||+.++..|..
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 34678999999976543 677776533 2223344 46899999999999999984 4899999999999999986
Q ss_pred C
Q psy663 253 V 253 (275)
Q Consensus 253 ~ 253 (275)
+
T Consensus 84 w 84 (150)
T 3qio_A 84 W 84 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.69 E-value=4.9e-08 Score=95.59 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=64.5
Q ss_pred CceEEEecCCCCCCc--eeEEEEeC-cceeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhCCC
Q psy663 178 NHTICYTDGSKSPDV--TGCAFSIG-DMVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANVK 254 (275)
Q Consensus 178 ~~~~IyTDGSk~~~~--~G~a~~~~-~~~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n~~ 254 (275)
+.+.||||||...++ .|+|++.. +....+.+ ..+|.+.||+.|+..||+.+ ..++.|+|||+.++..|..+.
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~~ 512 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQP 512 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTCC
T ss_pred CCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcCC
Confidence 568999999976543 67776653 22233333 46789999999999999998 679999999999999999876
Q ss_pred CC--CHHHHHHHHHH
Q psy663 255 FS--NPLVTKVFSTW 267 (275)
Q Consensus 255 ~~--~~i~~~I~~~~ 267 (275)
.. .++.+++.+.+
T Consensus 513 ~~~~~~l~~~~~~~l 527 (557)
T 2zd1_A 513 DKSESELVNQIIEQL 527 (557)
T ss_dssp SEESSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 54 56666665544
No 13
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.63 E-value=7e-08 Score=78.39 Aligned_cols=76 Identities=20% Similarity=0.106 Sum_probs=58.2
Q ss_pred CCceEEEecCCCCCC--ceeEEEEeCc--cee--eeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHH
Q psy663 177 ANHTICYTDGSKSPD--VTGCAFSIGD--MVR--STLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAAL 250 (275)
Q Consensus 177 ~~~~~IyTDGSk~~~--~~G~a~~~~~--~~~--~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al 250 (275)
...+.||||||...+ ..|+|++... ... +..+ ..+|...||+.|+..||+.+.+... ++.|+|||+.++..+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 356799999997654 3788887632 111 1122 2578999999999999999987655 899999999999999
Q ss_pred hCCC
Q psy663 251 ANVK 254 (275)
Q Consensus 251 ~n~~ 254 (275)
++..
T Consensus 87 ~~~~ 90 (142)
T 1zbf_A 87 KDKK 90 (142)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8664
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.61 E-value=1.2e-07 Score=92.80 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCceEEEecCCCCCCc--eeEEEEeCc-ceeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhCC
Q psy663 177 ANHTICYTDGSKSPDV--TGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANV 253 (275)
Q Consensus 177 ~~~~~IyTDGSk~~~~--~G~a~~~~~-~~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n~ 253 (275)
.+.+.||||||...++ .|+|++... ......+ ..+|...||+.|+..||+. ...++.|+|||+.++..|..+
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 3568999999987653 677776532 2223333 4678999999999999998 567999999999999999987
Q ss_pred CC--CCHHHHHHHHHH
Q psy663 254 KF--SNPLVTKVFSTW 267 (275)
Q Consensus 254 ~~--~~~i~~~I~~~~ 267 (275)
.. ..++.+++.+.+
T Consensus 509 ~~~~~~~l~~~~~~~~ 524 (555)
T 1mu2_A 509 PTESESKIVNQIIEEM 524 (555)
T ss_dssp CSEESCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh
Confidence 53 356666655543
No 15
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.60 E-value=1.2e-07 Score=76.17 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=55.6
Q ss_pred CCceEEEecCCCCCC-c-eeEEEEe-Cc-c--eeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHH
Q psy663 177 ANHTICYTDGSKSPD-V-TGCAFSI-GD-M--VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAAL 250 (275)
Q Consensus 177 ~~~~~IyTDGSk~~~-~-~G~a~~~-~~-~--~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al 250 (275)
+....||||||...+ | .|+|.|. .+ . .....+ ..+|...||+.|+..||+.+.+.... +.|+|||+.++.-|
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 456789999997654 3 7785443 22 1 122223 36899999999999999999875433 79999999999999
Q ss_pred hCCC
Q psy663 251 ANVK 254 (275)
Q Consensus 251 ~n~~ 254 (275)
.+..
T Consensus 81 ~~~~ 84 (134)
T 4htu_A 81 KDKK 84 (134)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8643
No 16
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.55 E-value=1e-07 Score=79.27 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=52.2
Q ss_pred CceEEEecCCCCCC--c-----eeEEEEeC--cc----eeeeecC-CccchhHHHHHHHHHHHHHHHcCCCCeEEEEecc
Q psy663 178 NHTICYTDGSKSPD--V-----TGCAFSIG--DM----VRSTLLN-PINSIFSAELIAIFLCLEAILENPSDQFLIVSDS 243 (275)
Q Consensus 178 ~~~~IyTDGSk~~~--~-----~G~a~~~~--~~----~~~~~l~-~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS 243 (275)
..++||||||...+ . .|+|++.. +. ...+..+ ...+-..||+.|+..||+.+... +.++.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeCh
Confidence 45799999997643 2 68887742 21 2223332 45567778888888888877653 3579999999
Q ss_pred HHHHHHHhC
Q psy663 244 RSALAALAN 252 (275)
Q Consensus 244 ~sal~al~n 252 (275)
+.++..|..
T Consensus 85 ~Yvi~~it~ 93 (165)
T 2lsn_A 85 FYVAESANK 93 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhhhh
Confidence 999999963
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=88.52 E-value=0.15 Score=48.09 Aligned_cols=73 Identities=10% Similarity=-0.092 Sum_probs=48.2
Q ss_pred CceEEEecCCCCCCceeEEEEe-Cc---c----eeeeecC---CccchhHHHHHHHHHHHHHHHcC-CCCeEEEEeccHH
Q psy663 178 NHTICYTDGSKSPDVTGCAFSI-GD---M----VRSTLLN---PINSIFSAELIAIFLCLEAILEN-PSDQFLIVSDSRS 245 (275)
Q Consensus 178 ~~~~IyTDGSk~~~~~G~a~~~-~~---~----~~~~~l~---~~~sif~AEl~aI~~al~~~~~~-~~~~~~I~sDS~s 245 (275)
....+|||+|. +++|+ +.. .+ . ..+-++. ...+++..|+.||..|++.+... .+..++|+||+.
T Consensus 345 ~~~~l~~DAS~--~~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 345 KPFELFVDEKQ--GYAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CTTSCEEEEEE--CSSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CcEEEEEeccC--Cccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 45689999985 34443 332 11 0 1111222 34578999999999999988653 567999999996
Q ss_pred HHHHHhCCC
Q psy663 246 ALAALANVK 254 (275)
Q Consensus 246 al~al~n~~ 254 (275)
++.-+.++.
T Consensus 421 ~~~~l~~~~ 429 (455)
T 1rw3_A 421 VEALVKQPP 429 (455)
T ss_dssp TTTTSSSTT
T ss_pred HHHHhCCCc
Confidence 666665543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=61.45 E-value=10 Score=35.19 Aligned_cols=69 Identities=3% Similarity=-0.176 Sum_probs=41.3
Q ss_pred CCceEEEecCCCCCCceeEEEEeCc----ceeeeecCCccchhHHHHHH-HHHHHHHHHc----CCCCeEEEEeccHHH
Q psy663 177 ANHTICYTDGSKSPDVTGCAFSIGD----MVRSTLLNPINSIFSAELIA-IFLCLEAILE----NPSDQFLIVSDSRSA 246 (275)
Q Consensus 177 ~~~~~IyTDGSk~~~~~G~a~~~~~----~~~~~~l~~~~sif~AEl~a-I~~al~~~~~----~~~~~~~I~sDS~sa 246 (275)
...+.++||+|.. +.+|+-...++ ...++.-....+.+.-|++| |..||+.... ..+..++++||.+.-
T Consensus 322 ~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~ 399 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWE 399 (428)
T ss_dssp TSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHH
T ss_pred CCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHH
Confidence 3457999999953 12232222222 12334422344566777777 9999987643 245678889998753
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=47.02 E-value=36 Score=26.84 Aligned_cols=52 Identities=25% Similarity=0.047 Sum_probs=30.5
Q ss_pred CceeEEEEeCcceeeeecCCccch----hHHHHHHHHHHHHHHHcCCCCeEEEEecc
Q psy663 191 DVTGCAFSIGDMVRSTLLNPINSI----FSAELIAIFLCLEAILENPSDQFLIVSDS 243 (275)
Q Consensus 191 ~~~G~a~~~~~~~~~~~l~~~~si----f~AEl~aI~~al~~~~~~~~~~~~I~sDS 243 (275)
-.||++++..+.....+-.-+..- --||..||..|... -...-..++|.+|.
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 369999986432211222211222 34999999999864 22234578888874
No 20
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=32.88 E-value=84 Score=24.23 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=30.5
Q ss_pred ceeEEEEeCcc--eeeeecC--CccchhHHHHHHHHHHHHHHHcCCCCeEEEEecc
Q psy663 192 VTGCAFSIGDM--VRSTLLN--PINSIFSAELIAIFLCLEAILENPSDQFLIVSDS 243 (275)
Q Consensus 192 ~~G~a~~~~~~--~~~~~l~--~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS 243 (275)
.||++++..+. ....-.. .+....-||..||..|... -...-..+++.+|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 58999886432 2111111 2222345999999999865 23344578888774
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=31.60 E-value=77 Score=24.77 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=30.0
Q ss_pred ceeEEEEeCcceeeeec--C--CccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccH
Q psy663 192 VTGCAFSIGDMVRSTLL--N--PINSIFSAELIAIFLCLEAILENPSDQFLIVSDSR 244 (275)
Q Consensus 192 ~~G~a~~~~~~~~~~~l--~--~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~ 244 (275)
.||+|+...+.....+- . .+..---||..||..|... -......+.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCC
Confidence 58999886443222221 1 1112234999999998853 112345788888753
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=25.57 E-value=1.4e+02 Score=23.18 Aligned_cols=52 Identities=23% Similarity=0.147 Sum_probs=30.6
Q ss_pred CceeEEEEeCcceeeeec--C--CccchhHHHHHHHHHHHHHHHcCC-CCeEEEEecc
Q psy663 191 DVTGCAFSIGDMVRSTLL--N--PINSIFSAELIAIFLCLEAILENP-SDQFLIVSDS 243 (275)
Q Consensus 191 ~~~G~a~~~~~~~~~~~l--~--~~~sif~AEl~aI~~al~~~~~~~-~~~~~I~sDS 243 (275)
-.||+|+...+.....+- . .+..-.-||..||..|...-. .. ...++|.+|.
T Consensus 32 f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~-~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 32 FRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGH-RSGWKCMVICGDS 88 (142)
T ss_dssp CCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC-CSCCCEEEEEESC
T ss_pred CCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCC-CCceEEEEEEeCC
Confidence 369999886432221121 1 111233499999999885422 23 5678888875
No 23
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=25.56 E-value=99 Score=24.51 Aligned_cols=51 Identities=18% Similarity=-0.034 Sum_probs=28.3
Q ss_pred ceeEEEEeCcceeeeecCCccc----hhHHHHHHHHHHHHHHHcCCCCeEEEEecc
Q psy663 192 VTGCAFSIGDMVRSTLLNPINS----IFSAELIAIFLCLEAILENPSDQFLIVSDS 243 (275)
Q Consensus 192 ~~G~a~~~~~~~~~~~l~~~~s----if~AEl~aI~~al~~~~~~~~~~~~I~sDS 243 (275)
.||+|+...+.....+-.-+.. --=||..||..|+..- ...-..+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 6999987644322222211111 2239999999998531 1233456777663
No 24
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=22.72 E-value=1.6e+02 Score=27.29 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=29.3
Q ss_pred hcCCceEEEecCCCCCCceeEEEEeCcceeeeecCCccchhHHHHHHHHHHHHHHH
Q psy663 175 KYANHTICYTDGSKSPDVTGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAIL 230 (275)
Q Consensus 175 ~~~~~~~IyTDGSk~~~~~G~a~~~~~~~~~~~l~~~~sif~AEl~aI~~al~~~~ 230 (275)
..+..|.||=|| .+-+....|..-|+.+|..|++.+.
T Consensus 234 ~~P~rIiiyRDG-------------------VseGqf~~V~~~El~~i~~a~~~~~ 270 (437)
T 2yhb_A 234 SLPENILIFRDG-------------------VSEGQFQMVIKDELPLVRAACKLVY 270 (437)
T ss_dssp CCCSEEEEEEES-------------------CCTTTHHHHHHHTHHHHHHHHHHHS
T ss_pred CCCceEEEEeCC-------------------cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 367889999999 2334456788999999999999874
No 25
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=22.28 E-value=1.4e+02 Score=23.45 Aligned_cols=39 Identities=23% Similarity=0.108 Sum_probs=21.9
Q ss_pred CceeEEEEeCcceeeeecCC----ccchhHHHHHHHHHHHHHH
Q psy663 191 DVTGCAFSIGDMVRSTLLNP----INSIFSAELIAIFLCLEAI 229 (275)
Q Consensus 191 ~~~G~a~~~~~~~~~~~l~~----~~sif~AEl~aI~~al~~~ 229 (275)
-.||+.++.++.....+... ....--||..||..|.+..
T Consensus 27 ~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 69 (159)
T 2b3j_A 27 VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL 69 (159)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHc
Confidence 34888888643322111111 1123349999999998753
No 26
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=21.39 E-value=1.5e+02 Score=26.94 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=28.9
Q ss_pred hcCCceEEEecCCCCCCceeEEEEeCcceeeeecCCccchhHHHHHHHHHHHHHHH
Q psy663 175 KYANHTICYTDGSKSPDVTGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAIL 230 (275)
Q Consensus 175 ~~~~~~~IyTDGSk~~~~~G~a~~~~~~~~~~~l~~~~sif~AEl~aI~~al~~~~ 230 (275)
..+.+|.||=|| .+-+....|..-|+.+|..|++.+.
T Consensus 234 ~~P~rIiiyRDG-------------------VseGQf~~V~~~El~~i~~a~~~~~ 270 (388)
T 2yha_A 234 SLPENILIFRDG-------------------VSEGQFQMVIKDELPLVRAACKLVY 270 (388)
T ss_dssp CCCSEEEEEEES-------------------CCGGGHHHHHHHTHHHHHHHHHHHS
T ss_pred CCCceEEEEecC-------------------cChhHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999 2223345688999999999999874
No 27
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=21.05 E-value=47 Score=25.06 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.5
Q ss_pred CceEEEecCCCCCCc
Q psy663 178 NHTICYTDGSKSPDV 192 (275)
Q Consensus 178 ~~~~IyTDGSk~~~~ 192 (275)
.++.+||+++|...|
T Consensus 97 kTlvvYT~~nk~~e~ 111 (120)
T 2grg_A 97 HFIVYFTPKNKNREG 111 (120)
T ss_dssp EEEEEEESCCCSCCC
T ss_pred cEEEEEccCCcCCcc
Confidence 467999999998876
Done!