Query psy663
Match_columns 275
No_of_seqs 136 out of 281
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 23:06:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy663.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/663hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s1ta1 c.55.3.1 (A:430-539) H 99.2 1.6E-11 1.2E-15 93.9 9.5 86 178-268 7-97 (110)
2 d1mu2a1 c.55.3.1 (A:430-555) H 99.2 5E-11 3.7E-15 92.8 10.1 73 178-255 6-81 (126)
3 d1rila_ c.55.3.1 (A:) RNase H 98.8 1.6E-09 1.2E-13 85.9 6.1 73 178-252 2-79 (147)
4 d1zbfa1 c.55.3.1 (A:62-193) BH 98.8 1.2E-08 8.8E-13 79.8 8.4 73 181-254 6-83 (132)
5 d1jl1a_ c.55.3.1 (A:) RNase H 98.6 2.6E-08 1.9E-12 78.7 7.1 73 179-253 2-79 (152)
6 d2d30a1 c.97.1.1 (A:1-124) mon 36.0 66 0.0048 22.6 8.1 52 192-244 25-80 (124)
7 d1r5ta_ c.97.1.1 (A:) mono-dom 34.8 30 0.0022 25.2 5.3 53 192-244 32-88 (141)
8 d1wwra1 c.97.1.2 (A:1-151) tRN 29.1 42 0.003 24.4 5.3 39 193-231 25-67 (151)
9 d1uwza_ c.97.1.1 (A:) mono-dom 26.2 1E+02 0.0073 21.7 8.6 52 192-244 25-80 (130)
10 d1x48a1 d.50.1.1 (A:8-83) dsRN 22.8 87 0.0064 19.7 7.5 66 166-233 3-69 (76)
11 d2a8na1 c.97.1.2 (A:2-131) Cyt 22.3 56 0.0041 23.0 4.8 48 193-240 25-76 (130)
No 1
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.24 E-value=1.6e-11 Score=93.90 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=62.0
Q ss_pred CceEEEecCCCCCC-c-eeEEEEeCc-ceeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhCCC
Q psy663 178 NHTICYTDGSKSPD-V-TGCAFSIGD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANVK 254 (275)
Q Consensus 178 ~~~~IyTDGSk~~~-~-~G~a~~~~~-~~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n~~ 254 (275)
+...+|||||...+ + .|+|++..+ ......++ ..|...||+.||.+||+. ...++.|+|||+.++.++....
T Consensus 7 ~~~t~ytDGs~~~n~~~g~~g~~~~~~~~~~~~~~-~~TNn~aEl~Avi~aL~~----~~~~v~I~TDS~yvi~~i~~~~ 81 (110)
T d1s1ta1 7 GAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLT-DTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQP 81 (110)
T ss_dssp TSEEEEEEEEEETTTTEEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHH----SCSEEEEEECCHHHHHHHHHCC
T ss_pred CCcEEEEeCCCCCCCCCcEEEEEEecCCeEEEecc-cCcHHHHHHHHHHHHHHh----CCCeEEEEEehHHHHHHHhcCc
Confidence 45689999996544 3 455555443 23334444 568999999999999974 4568999999999999998755
Q ss_pred C--CCHHHHHHHHHHH
Q psy663 255 F--SNPLVTKVFSTWR 268 (275)
Q Consensus 255 ~--~~~i~~~I~~~~~ 268 (275)
. .+.+.++|.+.+.
T Consensus 82 ~~~~~~l~~~il~~l~ 97 (110)
T d1s1ta1 82 DQSESELVNQIIEQLI 97 (110)
T ss_dssp SEESCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHh
Confidence 4 3677777766554
No 2
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.18 E-value=5e-11 Score=92.78 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=54.9
Q ss_pred CceEEEecCCCCCC-c-eeEEEEeCcc-eeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhCCC
Q psy663 178 NHTICYTDGSKSPD-V-TGCAFSIGDM-VRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANVK 254 (275)
Q Consensus 178 ~~~~IyTDGSk~~~-~-~G~a~~~~~~-~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n~~ 254 (275)
....||||||...+ + .|+|++.... .....++ ..|++.||+.||.+||+. ...++.|+|||+.++..+.+..
T Consensus 6 ~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~~~~~-~~tnn~AEl~Ai~~al~~----~~~~i~I~tDS~~v~~~~~~~~ 80 (126)
T d1mu2a1 6 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLE-QTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQP 80 (126)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTCC
T ss_pred CCcEEEEcCCCCCCCCcEEEEEEecCCCEEEEecC-CCcchHHHHHHHHHHhcc----CCcceEEEechHHHHHHHhcCC
Confidence 44689999996554 4 5566655443 3333444 578999999999999874 4678999999999999999865
Q ss_pred C
Q psy663 255 F 255 (275)
Q Consensus 255 ~ 255 (275)
.
T Consensus 81 ~ 81 (126)
T d1mu2a1 81 T 81 (126)
T ss_dssp S
T ss_pred c
Confidence 4
No 3
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=98.84 E-value=1.6e-09 Score=85.94 Aligned_cols=73 Identities=18% Similarity=0.058 Sum_probs=54.0
Q ss_pred CceEEEecCCCCCC-c-eeEEEEe--Cc-ceeeeecCCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhC
Q psy663 178 NHTICYTDGSKSPD-V-TGCAFSI--GD-MVRSTLLNPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALAN 252 (275)
Q Consensus 178 ~~~~IyTDGSk~~~-~-~G~a~~~--~~-~~~~~~l~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n 252 (275)
..++||||||...+ | .|+|++. .+ ....+.....+|..+||+.|+++||+++. ....+.|++||+.++..+..
T Consensus 2 ~~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~--~~~~i~i~tds~~~~~~~~~ 79 (147)
T d1rila_ 2 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALK--EPCEVDLYTDSHYLKKAFTE 79 (147)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCC--SCCEEEEECCCHHHHHHHHS
T ss_pred CEEEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhcc--CCceEEEecchhhhhccccc
Confidence 35899999998765 3 6788764 22 22222223456899999999999998653 45689999999999988865
No 4
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=98.75 E-value=1.2e-08 Score=79.80 Aligned_cols=73 Identities=19% Similarity=0.053 Sum_probs=54.8
Q ss_pred EEEecCCCCCC-c-eeEEEEeCc--ceeeeecC-CccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhCCC
Q psy663 181 ICYTDGSKSPD-V-TGCAFSIGD--MVRSTLLN-PINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANVK 254 (275)
Q Consensus 181 ~IyTDGSk~~~-~-~G~a~~~~~--~~~~~~l~-~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n~~ 254 (275)
-||||||...+ | .|+|+|... ....++-+ +..|...||+.|+..||+++.+.. .++.|+|||+.++..+.+..
T Consensus 6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~~~-~~i~I~tDS~yvi~wv~~~~ 83 (132)
T d1zbfa1 6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERN-SRKPIYSNSQTAIKWVKDKK 83 (132)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTT-CCCCEEESCHHHHHHHHHTC
T ss_pred eEEEeecCCCCCchheEEEEEEcCCEEEEEEcCcCccchHHHHHHHHHHHHHHhhcCC-ceEEEEeccHHHHHHHHhCc
Confidence 48999997765 3 788877532 22222211 467889999999999999998744 57899999999999997654
No 5
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=98.63 E-value=2.6e-08 Score=78.66 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=53.4
Q ss_pred ceEEEecCCCCCCc--eeEEEEe--Ccceeeeec-CCccchhHHHHHHHHHHHHHHHcCCCCeEEEEeccHHHHHHHhCC
Q psy663 179 HTICYTDGSKSPDV--TGCAFSI--GDMVRSTLL-NPINSIFSAELIAIFLCLEAILENPSDQFLIVSDSRSALAALANV 253 (275)
Q Consensus 179 ~~~IyTDGSk~~~~--~G~a~~~--~~~~~~~~l-~~~~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~sal~al~n~ 253 (275)
.+.||||||...++ .|+|++. ++....+.. .+..|...||+.|+..||+++. ....+.|.+||+.++..+...
T Consensus 2 ~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~--~~~~i~i~tds~~~i~~~~~~ 79 (152)
T d1jl1a_ 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK--EHAEVILSTDSQYVRQGITQW 79 (152)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCC--SCCEEEEEECCHHHHHHHHTT
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEECCeEEEeccccCcccHHHHHHhhhhhhhhhhc--ccceEEEeecceeeEEcccch
Confidence 47999999977653 7888764 333222222 2456889999999999998753 456789999999999888643
No 6
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=36.02 E-value=66 Score=22.57 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=30.9
Q ss_pred ceeEEEEeCcceeeeecCCccchh----HHHHHHHHHHHHHHHcCCCCeEEEEeccH
Q psy663 192 VTGCAFSIGDMVRSTLLNPINSIF----SAELIAIFLCLEAILENPSDQFLIVSDSR 244 (275)
Q Consensus 192 ~~G~a~~~~~~~~~~~l~~~~sif----~AEl~aI~~al~~~~~~~~~~~~I~sDS~ 244 (275)
.||+|+...+.....+..-+..-| =||..||..|+.. -......+.|.+|+.
T Consensus 25 ~VGAal~~~~G~i~~G~NvEn~s~~~~~CAEr~Ai~~a~~~-g~~~~~~i~v~~~~~ 80 (124)
T d2d30a1 25 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 80 (124)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEEeeccccCCcccCHHHHHHHHHHhc-CCceeEEEEEEcCCC
Confidence 599999875433222222112222 3999999988753 222445778888764
No 7
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.79 E-value=30 Score=25.19 Aligned_cols=53 Identities=26% Similarity=0.201 Sum_probs=29.7
Q ss_pred ceeEEEEeCcceeeeecCCccchh----HHHHHHHHHHHHHHHcCCCCeEEEEeccH
Q psy663 192 VTGCAFSIGDMVRSTLLNPINSIF----SAELIAIFLCLEAILENPSDQFLIVSDSR 244 (275)
Q Consensus 192 ~~G~a~~~~~~~~~~~l~~~~sif----~AEl~aI~~al~~~~~~~~~~~~I~sDS~ 244 (275)
.||+|+...+.....+.--+..-| =||..||..|+..-.+....-+++..|+.
T Consensus 32 ~VGAAl~t~~G~I~~G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~~~~vv~~~~~ 88 (141)
T d1r5ta_ 32 RVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 88 (141)
T ss_dssp CEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHhcCCccceEEEEeecCC
Confidence 599998864432222221112222 39999998887443333345666777654
No 8
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]}
Probab=29.13 E-value=42 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=24.1
Q ss_pred eeEEEEeCcceeeeecC----CccchhHHHHHHHHHHHHHHHc
Q psy663 193 TGCAFSIGDMVRSTLLN----PINSIFSAELIAIFLCLEAILE 231 (275)
Q Consensus 193 ~G~a~~~~~~~~~~~l~----~~~sif~AEl~aI~~al~~~~~ 231 (275)
||+-+|.++.....+.. .....--||..||..|.+....
T Consensus 25 VGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~ 67 (151)
T d1wwra1 25 VGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNT 67 (151)
T ss_dssp CEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC
T ss_pred EEEEEEECCeeeeeecccccccCcchhhHHHHHHHHHHHhhCc
Confidence 88888876543222211 1123345999999999887643
No 9
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=26.24 E-value=1e+02 Score=21.66 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=29.1
Q ss_pred ceeEEEEeCcceeeeecCCc----cchhHHHHHHHHHHHHHHHcCCCCeEEEEeccH
Q psy663 192 VTGCAFSIGDMVRSTLLNPI----NSIFSAELIAIFLCLEAILENPSDQFLIVSDSR 244 (275)
Q Consensus 192 ~~G~a~~~~~~~~~~~l~~~----~sif~AEl~aI~~al~~~~~~~~~~~~I~sDS~ 244 (275)
.||+|+...+.....+..-+ ..-.-||..||..|+-.- ......+.|.+|+.
T Consensus 25 ~VGAa~~~~~G~i~~G~NvEnas~~~~~CAEr~Ai~~a~~~g-~~~~~~i~v~~~~~ 80 (130)
T d1uwza_ 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEG-DTEFQMLAVAADTP 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEeeeccccccccccceehhhHHHHHhh-hcceeeEEEEcCCC
Confidence 59999886543222222211 112249999999876442 22344666777653
No 10
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.81 E-value=87 Score=19.74 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=40.1
Q ss_pred HHHHHHHhh-hcCCceEEEecCCCCCCceeEEEEeCcceeeeecCCccchhHHHHHHHHHHHHHHHcCC
Q psy663 166 QKFSEAINT-KYANHTICYTDGSKSPDVTGCAFSIGDMVRSTLLNPINSIFSAELIAIFLCLEAILENP 233 (275)
Q Consensus 166 ~~f~~~~~~-~~~~~~~IyTDGSk~~~~~G~a~~~~~~~~~~~l~~~~sif~AEl~aI~~al~~~~~~~ 233 (275)
...+++.+. +..-...+..+|...+...-+.++.++.. +.-+...|-=.||..|...||+.+....
T Consensus 3 s~L~E~~Qk~~~~~~~~~~~~G~~h~~~F~~~v~v~~~~--~~~g~G~sKK~Aeq~AA~~Al~~L~~~~ 69 (76)
T d1x48a1 3 GLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTM--YGTGSGVTKQEAKQLAAKEAYQKLLKSP 69 (76)
T ss_dssp HHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCE--EEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCccccCCcCCCCCCcEEEEEEECCEE--eCCcCccHHHHHHHHHHHHHHHHHHccC
Confidence 345566544 12222344455555444456666665543 3444456788999999999999998653
No 11
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.32 E-value=56 Score=23.02 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=27.2
Q ss_pred eeEEEEeCcceeeeecC----CccchhHHHHHHHHHHHHHHHcCCCCeEEEE
Q psy663 193 TGCAFSIGDMVRSTLLN----PINSIFSAELIAIFLCLEAILENPSDQFLIV 240 (275)
Q Consensus 193 ~G~a~~~~~~~~~~~l~----~~~sif~AEl~aI~~al~~~~~~~~~~~~I~ 240 (275)
||+.+|.++.....+.. ......-||..||..|.+......-...+++
T Consensus 25 VGavIV~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly 76 (130)
T d2a8na1 25 IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLY 76 (130)
T ss_dssp CEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEE
T ss_pred EEEEEEECCeEEEeecccccccccccchhHHHHHHHHHHHhCCcCCCCCEEe
Confidence 78877765533222211 1123346999999999887754433333333
Done!