RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy663
         (275 letters)



>d3bwuc2 b.7.2.1 (C:122-205) FimC {Escherichia coli [TaxId: 562]}
          Length = 84

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  SPFNPAQKLLYHQDMSGIIFTVNKPKPLYIRFREVANFNNVLESSEVAPY 133
            P   A+KL + +  S    T+  P P Y+   E+     VLE++ V P 
Sbjct: 2   PPDQAAEKLRFRR--SANSLTLINPTPYYLTVTELNAGTRVLENALVPPM 49


>d1p5va2 b.7.2.1 (A:148-233) Caf1m {Yersinia pestis [TaxId: 632]}
          Length = 86

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 84  SPFNPAQKLLYHQDMSGIIFTVNKPKPLYIRFREVANFNNVLESSEVAPY 133
           +P   A+ L +     G       P P Y+   E+      + S  + P 
Sbjct: 3   TPIQFAENLSWKV--DGGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPK 50


>d1l4ia2 b.7.2.1 (A:121-205) SfaE {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 24.3 bits (53), Expect = 6.3
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  SPFNPAQKLLYHQDMSGIIFTVNKPKPLYIRFREVANFNNVLESSEVAPY 133
            P     KL + ++  G+  T+  P P Y+   ++   N  LE++ V P 
Sbjct: 3   PPEQAPGKLEFTRENGGL--TLFNPTPYYLTVTDLKAGNKSLENTMVPPQ 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 979,377
Number of extensions: 42171
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 4
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)