Query psy6631
Match_columns 704
No_of_seqs 426 out of 2381
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:07:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0476|consensus 100.0 6E-102 1E-106 855.3 9.1 448 26-487 175-643 (931)
2 KOG0475|consensus 100.0 3.5E-61 7.5E-66 526.5 21.9 481 27-552 166-693 (696)
3 KOG0474|consensus 100.0 4E-61 8.7E-66 524.0 20.7 490 22-550 172-743 (762)
4 PRK01862 putative voltage-gate 100.0 5.5E-57 1.2E-61 520.6 34.6 417 52-551 143-568 (574)
5 cd03683 ClC_1_like ClC-1-like 100.0 8E-49 1.7E-53 436.5 24.2 325 33-410 87-426 (426)
6 cd03684 ClC_3_like ClC-3-like 100.0 1.8E-48 4E-53 435.6 21.1 350 34-408 71-445 (445)
7 cd01036 ClC_euk Chloride chann 100.0 1.8E-44 3.9E-49 400.7 20.5 292 52-397 113-416 (416)
8 cd03685 ClC_6_like ClC-6-like 100.0 1.3E-43 2.8E-48 398.5 24.4 294 52-411 154-462 (466)
9 PRK01610 putative voltage-gate 100.0 1.3E-42 2.8E-47 385.5 25.3 289 52-403 125-417 (418)
10 PF00654 Voltage_CLC: Voltage 100.0 1.8E-41 3.9E-46 369.8 21.3 283 52-389 66-354 (355)
11 cd01031 EriC ClC chloride chan 100.0 1.1E-40 2.4E-45 369.4 24.7 288 52-401 111-402 (402)
12 cd01033 ClC_like Putative ClC 100.0 1.3E-39 2.7E-44 358.9 24.9 274 52-392 110-387 (388)
13 COG0038 EriC Chloride channel 100.0 3.3E-39 7.2E-44 360.2 24.3 292 52-406 138-434 (443)
14 PRK05277 chloride channel prot 100.0 7.2E-39 1.6E-43 358.5 25.2 294 52-403 118-417 (438)
15 cd01034 EriC_like ClC chloride 100.0 9.4E-39 2E-43 352.5 18.8 281 52-397 105-390 (390)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.3E-35 2.9E-40 327.0 22.6 271 52-385 110-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.1E-34 2.3E-39 319.0 22.6 273 52-397 103-378 (378)
18 PRK03655 putative ion channel 100.0 6.7E-32 1.4E-36 298.8 22.5 263 52-389 125-398 (414)
19 PRK01862 putative voltage-gate 99.5 1.8E-13 4E-18 158.8 19.0 184 165-391 24-219 (574)
20 COG4109 Predicted transcriptio 99.5 7.9E-15 1.7E-19 153.2 2.6 156 373-573 156-313 (432)
21 COG3448 CBS-domain-containing 99.4 1.8E-12 3.8E-17 132.9 15.4 192 339-550 109-368 (382)
22 COG2524 Predicted transcriptio 99.3 5E-12 1.1E-16 127.8 6.2 118 418-550 169-287 (294)
23 cd00400 Voltage_gated_ClC CLC 99.2 1.7E-10 3.7E-15 127.7 17.3 177 173-392 1-187 (383)
24 PRK05277 chloride channel prot 99.2 3.3E-10 7.1E-15 127.6 19.2 182 167-392 2-198 (438)
25 cd01031 EriC ClC chloride chan 99.2 1.6E-10 3.5E-15 128.7 16.3 176 172-391 1-187 (402)
26 PRK10892 D-arabinose 5-phospha 99.2 3.2E-11 7E-16 130.4 9.0 141 393-549 170-320 (326)
27 PRK11543 gutQ D-arabinose 5-ph 99.1 1E-10 2.2E-15 126.2 8.6 142 393-550 165-316 (321)
28 cd04603 CBS_pair_KefB_assoc Th 99.0 2.7E-09 5.9E-14 96.2 9.0 106 430-549 2-108 (111)
29 cd03682 ClC_sycA_like ClC sycA 98.9 3.7E-08 7.9E-13 109.0 18.9 171 169-392 2-181 (378)
30 COG3620 Predicted transcriptio 98.9 2.5E-09 5.3E-14 101.2 7.5 117 420-553 64-183 (187)
31 PRK07807 inosine 5-monophospha 98.9 3.9E-09 8.5E-14 119.4 10.1 122 416-555 84-206 (479)
32 cd04619 CBS_pair_6 The CBS dom 98.8 1.5E-08 3.2E-13 91.8 8.2 105 431-549 3-111 (114)
33 cd03685 ClC_6_like ClC-6-like 98.8 9.6E-08 2.1E-12 108.4 15.6 197 163-390 30-242 (466)
34 PRK07107 inosine 5-monophospha 98.7 2.5E-08 5.3E-13 113.6 9.6 119 422-553 95-219 (502)
35 TIGR00393 kpsF KpsF/GutQ famil 98.7 1.5E-08 3.4E-13 106.3 6.9 109 420-542 154-265 (268)
36 cd04641 CBS_pair_28 The CBS do 98.7 3.6E-08 7.7E-13 90.0 8.4 107 429-549 1-117 (120)
37 TIGR01137 cysta_beta cystathio 98.7 2.7E-08 5.9E-13 112.5 9.0 139 396-551 311-451 (454)
38 cd04600 CBS_pair_HPP_assoc Thi 98.7 4.3E-08 9.3E-13 89.5 8.7 107 429-549 2-121 (124)
39 cd04639 CBS_pair_26 The CBS do 98.7 2.3E-08 4.9E-13 89.5 6.7 106 430-549 2-108 (111)
40 cd04617 CBS_pair_4 The CBS dom 98.7 2.7E-08 5.9E-13 90.6 6.9 105 430-548 2-114 (118)
41 KOG0476|consensus 98.7 1.5E-06 3.2E-11 99.3 22.0 92 461-553 552-646 (931)
42 cd04618 CBS_pair_5 The CBS dom 98.7 6.8E-08 1.5E-12 85.8 9.1 92 430-549 2-95 (98)
43 cd04801 CBS_pair_M50_like This 98.7 2.5E-08 5.4E-13 89.9 6.2 107 429-548 1-110 (114)
44 cd04630 CBS_pair_17 The CBS do 98.7 5.8E-08 1.3E-12 87.6 8.7 107 430-549 2-111 (114)
45 cd04626 CBS_pair_13 The CBS do 98.7 5.5E-08 1.2E-12 87.1 8.4 105 430-548 2-107 (111)
46 PRK15094 magnesium/cobalt effl 98.7 3.4E-08 7.4E-13 105.4 8.1 123 419-555 65-191 (292)
47 TIGR01303 IMP_DH_rel_1 IMP deh 98.7 6E-08 1.3E-12 109.7 10.0 119 418-555 85-204 (475)
48 cd04623 CBS_pair_10 The CBS do 98.7 6.3E-08 1.4E-12 86.5 7.9 106 430-549 2-110 (113)
49 TIGR00400 mgtE Mg2+ transporte 98.7 4.4E-08 9.5E-13 110.8 8.4 118 420-554 130-252 (449)
50 COG3448 CBS-domain-containing 98.7 1.9E-08 4.1E-13 103.8 4.8 121 494-637 242-364 (382)
51 cd04613 CBS_pair_SpoIVFB_EriC_ 98.7 5.1E-08 1.1E-12 87.2 7.0 107 429-549 1-111 (114)
52 cd04608 CBS_pair_PALP_assoc Th 98.7 3.1E-08 6.8E-13 91.6 5.6 108 429-549 2-120 (124)
53 PLN02274 inosine-5'-monophosph 98.6 7.4E-08 1.6E-12 109.9 9.7 117 424-554 103-222 (505)
54 cd04621 CBS_pair_8 The CBS dom 98.6 8.4E-08 1.8E-12 90.2 8.0 106 430-549 2-132 (135)
55 COG0517 FOG: CBS domain [Gener 98.6 1.1E-07 2.4E-12 85.5 8.4 111 424-548 2-115 (117)
56 cd04595 CBS_pair_DHH_polyA_Pol 98.6 1.2E-07 2.5E-12 84.8 7.6 106 429-549 2-107 (110)
57 cd04605 CBS_pair_MET2_assoc Th 98.6 1.3E-07 2.8E-12 84.4 7.9 105 429-549 2-107 (110)
58 cd04629 CBS_pair_16 The CBS do 98.6 8.2E-08 1.8E-12 86.1 6.5 107 429-549 1-111 (114)
59 cd04596 CBS_pair_DRTGG_assoc T 98.6 2E-07 4.3E-12 83.3 8.9 102 430-549 3-105 (108)
60 cd04599 CBS_pair_GGDEF_assoc2 98.6 2.8E-07 6.1E-12 81.4 9.6 101 430-549 2-102 (105)
61 cd04800 CBS_pair_CAP-ED_DUF294 98.6 2E-07 4.3E-12 83.3 8.7 107 429-550 1-109 (111)
62 cd04586 CBS_pair_BON_assoc Thi 98.6 8.9E-08 1.9E-12 89.3 6.6 106 429-548 2-131 (135)
63 cd04624 CBS_pair_11 The CBS do 98.6 1.8E-07 3.8E-12 83.8 8.2 106 430-549 2-109 (112)
64 PTZ00314 inosine-5'-monophosph 98.6 1.4E-07 3E-12 107.6 9.2 116 422-551 97-215 (495)
65 cd04803 CBS_pair_15 The CBS do 98.6 1.5E-07 3.2E-12 85.7 7.6 106 430-549 2-119 (122)
66 cd04601 CBS_pair_IMPDH This cd 98.6 3.9E-07 8.4E-12 81.0 10.1 104 429-549 2-107 (110)
67 cd04588 CBS_pair_CAP-ED_DUF294 98.6 2.2E-07 4.8E-12 82.9 8.4 106 429-549 1-107 (110)
68 cd04593 CBS_pair_EriC_assoc_ba 98.6 1.7E-07 3.7E-12 84.6 7.6 105 430-548 2-111 (115)
69 TIGR03520 GldE gliding motilit 98.6 1.6E-07 3.4E-12 104.9 8.9 122 418-555 188-313 (408)
70 cd04607 CBS_pair_NTP_transfera 98.6 2.5E-07 5.4E-12 83.2 8.6 105 431-549 4-110 (113)
71 PRK05567 inosine 5'-monophosph 98.6 2.1E-07 4.6E-12 106.2 10.1 112 422-550 88-201 (486)
72 cd04582 CBS_pair_ABC_OpuCA_ass 98.5 3.1E-07 6.8E-12 81.3 8.9 101 430-549 2-103 (106)
73 cd04632 CBS_pair_19 The CBS do 98.5 1.6E-07 3.5E-12 86.5 7.3 105 430-548 2-124 (128)
74 cd04615 CBS_pair_2 The CBS dom 98.5 2.1E-07 4.6E-12 83.4 7.8 106 430-549 2-110 (113)
75 cd04636 CBS_pair_23 The CBS do 98.5 1.5E-07 3.4E-12 87.3 7.1 106 430-549 2-129 (132)
76 cd04643 CBS_pair_30 The CBS do 98.5 2E-07 4.4E-12 83.8 7.6 104 430-549 2-113 (116)
77 cd04635 CBS_pair_22 The CBS do 98.5 3.3E-07 7.2E-12 83.3 8.6 106 429-548 1-118 (122)
78 cd04642 CBS_pair_29 The CBS do 98.5 3.1E-07 6.7E-12 84.6 8.4 106 430-549 2-123 (126)
79 cd04640 CBS_pair_27 The CBS do 98.5 2E-07 4.4E-12 85.9 7.2 106 430-549 2-123 (126)
80 cd04611 CBS_pair_PAS_GGDEF_DUF 98.5 3.6E-07 7.8E-12 81.4 8.5 104 430-548 2-107 (111)
81 cd04802 CBS_pair_3 The CBS dom 98.5 3.5E-07 7.6E-12 81.9 8.4 105 429-548 1-108 (112)
82 cd04625 CBS_pair_12 The CBS do 98.5 2.9E-07 6.2E-12 82.4 7.2 105 430-549 2-109 (112)
83 cd04592 CBS_pair_EriC_assoc_eu 98.5 1.4E-07 3.1E-12 88.9 5.5 95 430-538 2-118 (133)
84 TIGR01302 IMP_dehydrog inosine 98.5 3.2E-07 7E-12 103.7 9.2 118 421-552 80-199 (450)
85 cd04589 CBS_pair_CAP-ED_DUF294 98.5 3.7E-07 8E-12 81.7 7.8 105 430-549 2-108 (111)
86 cd04585 CBS_pair_ACT_assoc2 Th 98.5 5.3E-07 1.1E-11 81.5 8.7 105 430-549 2-119 (122)
87 cd04614 CBS_pair_1 The CBS dom 98.5 6.2E-07 1.4E-11 79.1 8.8 92 429-549 1-93 (96)
88 cd04631 CBS_pair_18 The CBS do 98.5 3.4E-07 7.5E-12 83.6 7.4 108 429-549 1-122 (125)
89 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 4.6E-07 1E-11 80.7 7.9 106 429-549 1-108 (111)
90 cd04602 CBS_pair_IMPDH_2 This 98.5 6.3E-07 1.4E-11 80.9 8.8 106 430-549 3-111 (114)
91 cd04622 CBS_pair_9 The CBS dom 98.5 7.1E-07 1.5E-11 79.9 9.0 106 429-549 1-110 (113)
92 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 6E-07 1.3E-11 79.7 8.1 103 429-548 2-105 (109)
93 cd04591 CBS_pair_EriC_assoc_eu 98.4 2.9E-07 6.3E-12 82.5 6.0 100 429-549 2-102 (105)
94 cd04604 CBS_pair_KpsF_GutQ_ass 98.4 4.5E-07 9.7E-12 81.2 7.2 106 430-549 3-111 (114)
95 cd04584 CBS_pair_ACT_assoc Thi 98.4 4.7E-07 1E-11 82.1 7.0 105 430-548 2-117 (121)
96 cd04627 CBS_pair_14 The CBS do 98.4 4.9E-07 1.1E-11 82.8 6.9 108 430-550 2-121 (123)
97 cd04594 CBS_pair_EriC_assoc_ar 98.4 1E-06 2.2E-11 78.3 8.6 98 432-549 4-101 (104)
98 cd04620 CBS_pair_7 The CBS dom 98.4 7.2E-07 1.6E-11 80.3 7.3 105 430-549 2-112 (115)
99 PRK14869 putative manganese-de 98.4 8.4E-08 1.8E-12 111.2 1.3 183 421-637 68-296 (546)
100 cd04590 CBS_pair_CorC_HlyC_ass 98.4 8.1E-07 1.8E-11 79.3 7.4 106 430-549 2-108 (111)
101 cd04633 CBS_pair_20 The CBS do 98.4 1.3E-06 2.8E-11 79.3 8.1 105 430-549 2-118 (121)
102 COG2524 Predicted transcriptio 98.3 2.1E-07 4.5E-12 94.7 2.8 114 494-637 169-283 (294)
103 PRK01610 putative voltage-gate 98.3 2.1E-05 4.6E-10 88.2 18.9 186 165-391 4-200 (418)
104 cd04606 CBS_pair_Mg_transporte 98.3 1.6E-06 3.4E-11 77.6 8.0 98 434-549 2-105 (109)
105 cd04587 CBS_pair_CAP-ED_DUF294 98.3 2E-06 4.4E-11 76.9 8.7 104 430-548 2-109 (113)
106 cd01036 ClC_euk Chloride chann 98.3 4.2E-06 9.2E-11 93.8 12.5 190 173-391 1-202 (416)
107 COG2905 Predicted signal-trans 98.3 1E-06 2.2E-11 98.4 7.2 124 418-555 146-271 (610)
108 cd04610 CBS_pair_ParBc_assoc T 98.3 3.7E-06 7.9E-11 74.4 9.5 101 429-548 2-103 (107)
109 cd04637 CBS_pair_24 The CBS do 98.3 1.5E-06 3.2E-11 79.2 7.0 105 430-549 2-119 (122)
110 cd02205 CBS_pair The CBS domai 98.3 2E-06 4.2E-11 75.6 7.3 105 430-548 2-109 (113)
111 cd04634 CBS_pair_21 The CBS do 98.3 1.8E-06 3.9E-11 81.8 7.0 106 429-549 1-140 (143)
112 cd04609 CBS_pair_PALP_assoc2 T 98.2 3.6E-06 7.7E-11 74.7 7.6 103 430-549 2-107 (110)
113 cd04638 CBS_pair_25 The CBS do 98.2 5.5E-06 1.2E-10 73.5 8.7 102 430-549 2-103 (106)
114 PRK11543 gutQ D-arabinose 5-ph 98.2 5.1E-07 1.1E-11 97.5 2.3 117 496-641 196-319 (321)
115 cd01033 ClC_like Putative ClC 98.2 3.8E-05 8.2E-10 85.4 17.0 175 173-391 1-186 (388)
116 PF00571 CBS: CBS domain CBS d 98.2 8.8E-07 1.9E-11 70.3 2.5 52 423-487 1-52 (57)
117 COG2239 MgtE Mg/Co/Ni transpor 98.2 4.4E-06 9.6E-11 93.6 8.8 116 422-554 133-253 (451)
118 cd04598 CBS_pair_GGDEF_assoc T 98.1 5.7E-06 1.2E-10 74.8 7.1 107 429-549 1-116 (119)
119 PRK10892 D-arabinose 5-phospha 98.0 2.1E-06 4.5E-11 93.1 2.8 114 495-637 200-317 (326)
120 cd03684 ClC_3_like ClC-3-like 98.0 0.00012 2.5E-09 83.0 16.1 176 173-391 1-183 (445)
121 cd03683 ClC_1_like ClC-1-like 98.0 6.4E-05 1.4E-09 84.6 12.6 190 167-391 3-203 (426)
122 PRK11573 hypothetical protein; 97.9 2.6E-05 5.7E-10 87.3 8.8 125 418-556 184-314 (413)
123 COG0038 EriC Chloride channel 97.9 0.00047 1E-08 78.1 18.3 100 282-393 113-217 (443)
124 PRK07807 inosine 5-monophospha 97.9 5.9E-06 1.3E-10 93.8 2.5 110 494-637 86-197 (479)
125 TIGR01303 IMP_DH_rel_1 IMP deh 97.9 7.2E-06 1.6E-10 93.0 2.8 110 494-637 85-195 (475)
126 PRK03655 putative ion channel 97.8 0.001 2.2E-08 74.7 19.3 180 164-392 11-204 (414)
127 cd04618 CBS_pair_5 The CBS dom 97.8 1.5E-05 3.1E-10 70.8 3.8 88 506-637 2-92 (98)
128 cd04641 CBS_pair_28 The CBS do 97.8 3.3E-05 7E-10 70.3 4.9 110 505-637 1-114 (120)
129 cd04619 CBS_pair_6 The CBS dom 97.7 2.3E-05 5E-10 70.7 3.7 104 507-637 3-108 (114)
130 COG3620 Predicted transcriptio 97.7 1.2E-05 2.7E-10 76.5 1.7 112 496-637 64-176 (187)
131 cd04597 CBS_pair_DRTGG_assoc2 97.7 2.4E-05 5.2E-10 71.3 3.6 54 421-487 58-111 (113)
132 COG1253 TlyC Hemolysins and re 97.6 0.00014 3.1E-09 81.9 9.1 123 418-554 203-329 (429)
133 cd04627 CBS_pair_14 The CBS do 97.6 5.1E-05 1.1E-09 69.3 3.9 114 506-639 2-121 (123)
134 TIGR00393 kpsF KpsF/GutQ famil 97.6 3.1E-05 6.7E-10 81.3 2.7 111 496-635 154-267 (268)
135 TIGR00400 mgtE Mg2+ transporte 97.6 1.7E-05 3.7E-10 89.9 0.8 97 421-535 195-291 (449)
136 cd04608 CBS_pair_PALP_assoc Th 97.6 7.1E-05 1.5E-09 69.1 4.7 105 505-637 2-117 (124)
137 cd01034 EriC_like ClC chloride 97.5 0.0026 5.6E-08 70.9 17.0 99 282-391 80-182 (390)
138 cd04614 CBS_pair_1 The CBS dom 97.5 9.3E-05 2E-09 65.1 4.3 89 505-637 1-90 (96)
139 PRK07107 inosine 5-monophospha 97.5 3.3E-05 7.2E-10 88.3 1.7 109 497-637 94-212 (502)
140 COG0517 FOG: CBS domain [Gener 97.5 8E-05 1.7E-09 66.8 3.7 109 500-637 2-113 (117)
141 cd04620 CBS_pair_7 The CBS dom 97.5 8.4E-05 1.8E-09 66.7 3.8 105 506-637 2-109 (115)
142 PRK15094 magnesium/cobalt effl 97.5 8.7E-05 1.9E-09 79.4 4.2 113 495-637 65-181 (292)
143 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00016 3.5E-09 65.7 4.9 115 505-637 2-118 (124)
144 cd04603 CBS_pair_KefB_assoc Th 97.4 0.00018 3.9E-09 64.6 4.9 55 421-488 56-110 (111)
145 cd04617 CBS_pair_4 The CBS dom 97.4 0.00012 2.6E-09 66.5 3.5 103 506-637 2-112 (118)
146 cd04630 CBS_pair_17 The CBS do 97.4 0.00011 2.4E-09 66.0 3.2 103 506-637 2-108 (114)
147 KOG2550|consensus 97.4 0.00015 3.2E-09 78.5 4.4 107 429-550 116-224 (503)
148 cd04801 CBS_pair_M50_like This 97.4 0.00018 3.9E-09 64.6 4.2 104 505-637 1-108 (114)
149 cd04642 CBS_pair_29 The CBS do 97.4 0.00019 4.2E-09 65.9 4.4 117 506-637 2-120 (126)
150 cd04587 CBS_pair_CAP-ED_DUF294 97.3 0.00019 4.1E-09 64.0 4.1 105 506-637 2-107 (113)
151 cd04643 CBS_pair_30 The CBS do 97.3 0.00018 3.8E-09 64.6 3.7 107 506-637 2-110 (116)
152 KOG1764|consensus 97.3 7.8E-05 1.7E-09 82.5 1.2 176 430-637 163-351 (381)
153 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00019 4.1E-09 63.9 3.3 105 505-637 1-108 (114)
154 cd04622 CBS_pair_9 The CBS dom 97.3 0.00024 5.2E-09 63.4 3.8 105 505-637 1-107 (113)
155 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.0003 6.6E-09 63.2 4.1 104 506-637 2-109 (115)
156 PF00654 Voltage_CLC: Voltage 97.2 0.0016 3.5E-08 71.6 10.6 99 281-391 40-143 (355)
157 TIGR03520 GldE gliding motilit 97.2 0.00027 5.9E-09 79.1 4.5 111 495-637 189-303 (408)
158 cd04585 CBS_pair_ACT_assoc2 Th 97.2 0.00036 7.7E-09 62.8 4.4 114 506-637 2-116 (122)
159 cd04590 CBS_pair_CorC_HlyC_ass 97.2 0.00029 6.2E-09 62.7 3.7 102 506-637 2-105 (111)
160 PRK14869 putative manganese-de 97.2 0.00039 8.5E-09 80.8 5.6 103 420-536 245-375 (546)
161 PLN02274 inosine-5'-monophosph 97.2 0.00029 6.3E-09 80.8 4.0 105 500-637 103-214 (505)
162 PTZ00314 inosine-5'-monophosph 97.1 0.0002 4.3E-09 82.0 2.2 107 498-637 97-210 (495)
163 COG4109 Predicted transcriptio 97.1 0.00023 5.1E-09 75.7 2.5 118 496-647 187-310 (432)
164 cd04582 CBS_pair_ABC_OpuCA_ass 97.1 0.00057 1.2E-08 60.3 4.6 97 506-637 2-100 (106)
165 TIGR01302 IMP_dehydrog inosine 97.1 0.00031 6.7E-09 79.7 3.6 107 498-637 81-193 (450)
166 cd04605 CBS_pair_MET2_assoc Th 97.1 0.0004 8.7E-09 61.7 3.7 101 505-637 2-104 (110)
167 cd04631 CBS_pair_18 The CBS do 97.1 0.00034 7.3E-09 63.7 3.1 116 505-637 1-119 (125)
168 TIGR01137 cysta_beta cystathio 97.0 0.00032 6.9E-09 79.5 2.8 113 494-637 332-446 (454)
169 cd04588 CBS_pair_CAP-ED_DUF294 97.0 0.0005 1.1E-08 61.1 3.5 103 505-637 1-104 (110)
170 cd04607 CBS_pair_NTP_transfera 97.0 0.00084 1.8E-08 60.1 4.7 54 421-487 58-111 (113)
171 cd04612 CBS_pair_SpoIVFB_EriC_ 97.0 0.00061 1.3E-08 60.4 3.8 104 505-637 1-105 (111)
172 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.0005 1.1E-08 61.1 3.2 104 505-637 1-105 (111)
173 cd04623 CBS_pair_10 The CBS do 97.0 0.00066 1.4E-08 60.2 3.5 104 506-637 2-107 (113)
174 cd04598 CBS_pair_GGDEF_assoc T 96.9 0.00067 1.5E-08 61.1 3.4 111 505-637 1-113 (119)
175 COG2905 Predicted signal-trans 96.9 0.00058 1.3E-08 76.9 3.4 113 497-637 149-262 (610)
176 cd04589 CBS_pair_CAP-ED_DUF294 96.9 0.00059 1.3E-08 60.8 2.9 103 506-637 2-105 (111)
177 PRK05567 inosine 5'-monophosph 96.9 0.00028 6E-09 80.8 0.9 107 498-637 88-197 (486)
178 COG4536 CorB Putative Mg2+ and 96.9 0.0013 2.8E-08 71.0 5.6 126 418-557 197-328 (423)
179 cd04599 CBS_pair_GGDEF_assoc2 96.9 0.0008 1.7E-08 59.1 3.5 97 506-637 2-99 (105)
180 cd04633 CBS_pair_20 The CBS do 96.9 0.00056 1.2E-08 61.8 2.5 113 506-637 2-115 (121)
181 cd04596 CBS_pair_DRTGG_assoc T 96.8 0.0012 2.7E-08 58.6 4.0 54 421-487 53-106 (108)
182 cd04625 CBS_pair_12 The CBS do 96.8 0.0017 3.8E-08 57.7 4.6 54 421-488 58-111 (112)
183 cd04635 CBS_pair_22 The CBS do 96.7 0.0019 4.1E-08 58.4 4.7 56 420-488 66-121 (122)
184 cd04583 CBS_pair_ABC_OpuCA_ass 96.7 0.0022 4.7E-08 56.6 4.8 54 421-487 54-107 (109)
185 cd04610 CBS_pair_ParBc_assoc T 96.7 0.0021 4.6E-08 56.5 4.7 54 421-487 52-105 (107)
186 cd02205 CBS_pair The CBS domai 96.7 0.0017 3.7E-08 56.6 4.1 104 506-637 2-107 (113)
187 cd04615 CBS_pair_2 The CBS dom 96.7 0.0021 4.6E-08 57.3 4.6 55 420-487 57-111 (113)
188 cd04602 CBS_pair_IMPDH_2 This 96.7 0.0019 4.1E-08 58.0 4.2 54 421-487 57-112 (114)
189 PRK10070 glycine betaine trans 96.7 0.0046 9.9E-08 69.1 8.0 112 421-550 274-389 (400)
190 cd04595 CBS_pair_DHH_polyA_Pol 96.7 0.0026 5.5E-08 56.5 4.8 54 420-487 55-108 (110)
191 PF00571 CBS: CBS domain CBS d 96.6 0.0026 5.7E-08 50.1 4.3 51 499-550 1-52 (57)
192 cd04606 CBS_pair_Mg_transporte 96.6 0.0024 5.3E-08 56.8 4.5 56 420-488 52-107 (109)
193 cd04802 CBS_pair_3 The CBS dom 96.6 0.0033 7.2E-08 55.9 5.4 55 420-488 57-111 (112)
194 cd04639 CBS_pair_26 The CBS do 96.6 0.0022 4.7E-08 57.0 4.1 53 422-487 57-109 (111)
195 cd04611 CBS_pair_PAS_GGDEF_DUF 96.6 0.0033 7.1E-08 55.6 5.0 56 420-488 55-110 (111)
196 cd04609 CBS_pair_PALP_assoc2 T 96.6 0.0019 4E-08 57.0 3.4 102 506-637 2-104 (110)
197 cd04604 CBS_pair_KpsF_GutQ_ass 96.6 0.0024 5.3E-08 56.8 4.2 54 421-487 59-112 (114)
198 cd04803 CBS_pair_15 The CBS do 96.5 0.0027 5.9E-08 57.4 4.3 55 420-487 66-120 (122)
199 cd04601 CBS_pair_IMPDH This cd 96.5 0.0033 7.1E-08 55.5 4.8 55 420-487 53-108 (110)
200 cd04586 CBS_pair_BON_assoc Thi 96.5 0.0027 5.9E-08 58.9 4.4 55 420-488 80-134 (135)
201 TIGR01186 proV glycine betaine 96.4 0.0077 1.7E-07 66.5 8.0 106 427-550 248-354 (363)
202 cd04621 CBS_pair_8 The CBS dom 96.4 0.0043 9.3E-08 58.1 4.8 54 420-487 80-133 (135)
203 cd04632 CBS_pair_19 The CBS do 96.4 0.0046 1E-07 56.6 4.7 57 420-487 70-126 (128)
204 cd04626 CBS_pair_13 The CBS do 96.3 0.0059 1.3E-07 54.3 5.2 53 421-487 57-109 (111)
205 cd04594 CBS_pair_EriC_assoc_ar 96.2 0.0052 1.1E-07 54.3 4.2 52 422-487 51-102 (104)
206 KOG1764|consensus 96.2 0.022 4.8E-07 63.3 9.8 107 430-550 238-355 (381)
207 cd04637 CBS_pair_24 The CBS do 96.2 0.005 1.1E-07 55.7 3.9 54 421-487 67-120 (122)
208 cd04592 CBS_pair_EriC_assoc_eu 96.2 0.0097 2.1E-07 56.0 5.9 114 506-629 2-119 (133)
209 cd04629 CBS_pair_16 The CBS do 96.1 0.0053 1.1E-07 54.7 3.6 54 420-487 59-112 (114)
210 cd04624 CBS_pair_11 The CBS do 96.1 0.0076 1.6E-07 53.5 4.6 54 421-487 57-110 (112)
211 cd04636 CBS_pair_23 The CBS do 96.1 0.0079 1.7E-07 55.5 4.8 53 421-487 78-130 (132)
212 cd04584 CBS_pair_ACT_assoc Thi 96.0 0.0071 1.5E-07 54.4 4.2 55 420-488 66-120 (121)
213 COG2239 MgtE Mg/Co/Ni transpor 96.0 0.0054 1.2E-07 69.2 4.0 124 494-650 129-265 (451)
214 PRK11573 hypothetical protein; 96.0 0.047 1E-06 61.4 11.4 115 495-637 185-303 (413)
215 COG4535 CorC Putative Mg2+ and 96.0 0.0055 1.2E-07 62.3 3.5 115 419-547 65-184 (293)
216 cd04640 CBS_pair_27 The CBS do 96.0 0.0046 1E-07 56.7 2.7 56 420-487 63-124 (126)
217 cd04591 CBS_pair_EriC_assoc_eu 95.9 0.014 3.1E-07 51.9 5.3 48 426-487 56-103 (105)
218 cd04638 CBS_pair_25 The CBS do 95.3 0.024 5.2E-07 49.9 4.5 52 422-487 53-104 (106)
219 KOG0474|consensus 95.0 0.0091 2E-07 68.1 1.3 138 494-637 579-739 (762)
220 COG4536 CorB Putative Mg2+ and 95.0 0.0089 1.9E-07 64.7 1.1 145 441-637 168-316 (423)
221 smart00116 CBS Domain in cysta 94.9 0.027 5.8E-07 41.2 3.3 44 431-487 2-45 (49)
222 cd04634 CBS_pair_21 The CBS do 94.7 0.042 9.1E-07 51.8 4.8 54 420-487 88-141 (143)
223 COG1253 TlyC Hemolysins and re 93.6 0.036 7.9E-07 62.6 2.2 113 495-637 204-320 (429)
224 cd04597 CBS_pair_DRTGG_assoc2 92.9 0.14 2.9E-06 46.5 4.3 52 497-549 58-110 (113)
225 KOG2550|consensus 91.0 0.16 3.6E-06 55.6 3.0 59 420-491 170-228 (503)
226 TIGR01186 proV glycine betaine 90.4 0.21 4.5E-06 55.3 3.2 53 422-488 303-355 (363)
227 PRK10070 glycine betaine trans 85.5 0.61 1.3E-05 52.3 3.0 53 422-488 338-390 (400)
228 smart00116 CBS Domain in cysta 83.7 0.3 6.6E-06 35.3 -0.3 39 597-637 3-41 (49)
229 KOG0475|consensus 82.1 2.3 4.9E-05 49.4 5.7 134 498-637 547-687 (696)
230 COG4175 ProV ABC-type proline/ 80.9 2.6 5.5E-05 45.6 5.2 107 419-551 272-380 (386)
231 TIGR03415 ABC_choXWV_ATP choli 76.0 5.2 0.00011 44.7 6.2 106 418-550 271-376 (382)
232 COG4535 CorC Putative Mg2+ and 63.3 1.7 3.6E-05 44.9 -1.1 74 436-533 30-107 (293)
233 PRK09824 PTS system beta-gluco 48.3 1.9E+02 0.004 34.7 12.3 79 105-190 205-283 (627)
234 TIGR03415 ABC_choXWV_ATP choli 44.4 15 0.00033 41.1 2.4 50 422-487 327-376 (382)
235 PRK10712 PTS system fructose-s 39.9 3.5E+02 0.0075 32.0 12.7 15 209-223 350-364 (563)
236 COG4175 ProV ABC-type proline/ 31.8 31 0.00067 37.6 2.2 48 426-487 332-379 (386)
237 PRK09765 PTS system 2-O-a-mann 31.7 9.7E+02 0.021 28.7 15.9 24 118-141 379-402 (631)
238 PF04982 HPP: HPP family; Int 30.3 3.4E+02 0.0074 25.1 8.7 18 373-390 92-109 (120)
239 KOG4267|consensus 30.0 1.2E+02 0.0025 27.9 5.2 44 303-355 28-71 (110)
240 PF01102 Glycophorin_A: Glycop 29.4 81 0.0018 29.5 4.3 17 167-183 66-82 (122)
241 KOG4112|consensus 28.0 1.2E+02 0.0026 27.0 4.8 18 306-323 32-49 (101)
242 KOG2118|consensus 27.8 55 0.0012 38.0 3.6 97 418-525 201-301 (498)
243 COG1125 OpuBA ABC-type proline 27.3 45 0.00097 35.4 2.4 55 420-487 248-306 (309)
244 COG2205 KdpD Osmosensitive K+ 26.3 1.4E+02 0.003 36.6 6.5 41 96-137 419-459 (890)
245 KOG1278|consensus 23.6 2.6E+02 0.0057 32.8 7.7 22 165-186 368-389 (628)
246 PRK09765 PTS system 2-O-a-mann 22.9 5.7E+02 0.012 30.6 10.9 17 207-223 413-429 (631)
247 PRK09796 PTS system cellobiose 22.4 1.2E+03 0.027 26.8 13.6 78 105-189 207-284 (472)
248 TIGR00844 c_cpa1 na(+)/h(+) an 21.7 1.9E+02 0.0041 35.6 6.5 12 302-313 130-141 (810)
249 COG4129 Predicted membrane pro 21.4 5.5E+02 0.012 28.3 9.5 43 361-403 113-159 (332)
No 1
>KOG0476|consensus
Probab=100.00 E-value=5.8e-102 Score=855.35 Aligned_cols=448 Identities=50% Similarity=0.818 Sum_probs=425.3
Q ss_pred cchhhhHhhhhccccceE--Eeeeeehh-------------hhhhhhccccccccc-CCCcccccccccccccCCCCCcc
Q psy6631 26 TVEEQEVLKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCI-SPSEITGEDSLTKIEKFPEGRAP 89 (704)
Q Consensus 26 ~~~~~~v~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~-~~~~i~g~~~~~~~~~l~~~~ga 89 (704)
||.++++||+|+|.||+| |++|||++ |++++||+.+++... .+++++ +|+-++.++|.+ ||
T Consensus 175 tIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~-enesR~~EmLaa--aC 251 (931)
T KOG0476|consen 175 TILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFF-ENESRNMEMLAA--AC 251 (931)
T ss_pred HHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccc-cCcchHHHHHHH--Hh
Confidence 689999999999999999 99999888 999999999998866 778888 788778888875 89
Q ss_pred cchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccccccCCCCCCChhHHHH
Q psy6631 90 LVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFY-NEETMRAFFPTNFTMDFPFDPQELTV 168 (704)
Q Consensus 90 AAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~-~~~~~~~~F~~~~~~~~~~~~~el~~ 168 (704)
|.||||+|+||+|||||+||+++.||++|||||+||||+|+++++|++..|+. .+.+++++|+++|.+|++|+++|||+
T Consensus 252 AVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~tItA~yqT~F~~d~~F~~~ELp~ 331 (931)
T KOG0476|consen 252 AVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVTITALYQTSFRPDFPFDVQELPF 331 (931)
T ss_pred hhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhhhHHHHhccCCCCCCCCHHHhHH
Confidence 99999999999999999999999999999999999999999999999999877 34568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhc
Q psy6631 169 FALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSN 248 (704)
Q Consensus 169 ~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~ 248 (704)
|+++|++||++|++|++++|++..|+|+|+..+++++++|+++|++++++++.+.||.|+|+|++|+++.+|++.++|+|
T Consensus 332 FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP~GlG~f~aG~l~f~etl~~fF~N 411 (931)
T KOG0476|consen 332 FALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLTFPPGLGQFLAGRLSFRETLVDFFDN 411 (931)
T ss_pred HHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhheecCCcccccccccccHHhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCC--CcchhhHhhhhhcccC--CcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhc
Q psy6631 249 FTWTKG--HFTVEEQEVLKHWTTR--NTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRF 324 (704)
Q Consensus 249 ~~~~~~--~~~~~~~~i~~~~~~~--~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~ 324 (704)
|+|... +-..+...+..+|.++ ...++.+|++|+++||+++++|+++++|+|+|+|.|+|||++||++|+.+..+|
T Consensus 412 ctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lf 491 (931)
T KOG0476|consen 412 CTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLF 491 (931)
T ss_pred CeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeec
Confidence 999765 4444556677789876 667899999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCccCCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhc
Q psy6631 325 PDGITHGKFIAPIIPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKK 404 (704)
Q Consensus 325 p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~ 404 (704)
|+|++.||...++.||.||++|||||.|+||||+|++||+||+|||..+++|+|||+++||++++.+++|+||+.++.|+
T Consensus 492 P~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTHTvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKk 571 (931)
T KOG0476|consen 492 PEGIRGGGITPPIHPGGYAVVGAAAFSGAVTHTVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKK 571 (931)
T ss_pred ccccccCCccCccccchhhhhhhhhhccceeeeeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeecc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCC
Q psy6631 405 LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYL 484 (704)
Q Consensus 405 ~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~ 484 (704)
+||++|++|++...++++|+|+|.+|++++..++|++|+++++..+ ..+.||+||+. +++.|+|.|.++
T Consensus 572 lPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~-~lR~~PlV~s~----------esmiLlGSV~R~ 640 (931)
T KOG0476|consen 572 LPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTT-TLRSFPLVESK----------ESMILLGSVARR 640 (931)
T ss_pred CCcCCCCCCcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhC-ccceeccccCc----------ccceeeehhHHH
Confidence 9999999999999999999999999999999999999999999988 49999999988 779999999998
Q ss_pred CCC
Q psy6631 485 PDL 487 (704)
Q Consensus 485 dll 487 (704)
++.
T Consensus 641 ~L~ 643 (931)
T KOG0476|consen 641 YLT 643 (931)
T ss_pred HHH
Confidence 885
No 2
>KOG0475|consensus
Probab=100.00 E-value=3.5e-61 Score=526.45 Aligned_cols=481 Identities=25% Similarity=0.332 Sum_probs=385.9
Q ss_pred chhhhHhhhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCCCcccc
Q psy6631 27 VEEQEVLKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLV 91 (704)
Q Consensus 27 ~~~~~v~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAA 91 (704)
+.-+.+.+.|+..+|++ -+++..++ |+|.||+..+++++. .+++++.++++.|.+ ++||
T Consensus 166 ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~----~~~~~e~~~reilsA--aaAa 239 (696)
T KOG0475|consen 166 ILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFP----KYRLNEAKKREILSA--AAAA 239 (696)
T ss_pred eeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhh----hhccchhHHHHHHHH--Hhhc
Confidence 45566778899999998 33333333 999999999999884 777899889999985 8999
Q ss_pred hhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHH
Q psy6631 92 VYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFAL 171 (704)
Q Consensus 92 GvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~il 171 (704)
|||++||||||||||++|+++.+|+.+.+|+.|+||.+|.+++|.+.+ |++++. .+|.++| +.+|++.|+++|++
T Consensus 240 GvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i~p-f~~~~~--vLf~V~Y--~~~W~~~EL~pFi~ 314 (696)
T KOG0475|consen 240 GVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSINP-FGNSRL--VLFYVDY--DRPWSLFELLPFIL 314 (696)
T ss_pred cchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeeecc-cCCCce--EEEEEec--cCCcccccchHHHH
Confidence 999999999999999999999999999999999999999999999998 566665 5787776 45799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCcc
Q psy6631 172 IGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTW 251 (704)
Q Consensus 172 lGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~ 251 (704)
+|++||+.|.+|+|++.++.++++.. .+.+++.+++++++++++++.||+.+..+ ++.|.+..||+.|.-
T Consensus 315 LGifgGl~G~~~ir~n~~~~~~rK~~-----~lg~~pv~ev~~vt~iTaiIs~~np~~r~-----~~~e~i~~Lf~~C~~ 384 (696)
T KOG0475|consen 315 LGIFGGLWGAFFIRLNIRFCRFRKSS-----KLGKFPVLEVVFVTLVTAIISLFNPETRF-----NMSELITILFNKCSP 384 (696)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchh-----hccCCcchhHHHHHHHHHHHHhcCHHHHh-----hHHHHHHHHHhhcCC
Confidence 99999999999999999877554322 36778899999999999999998887764 457899999998753
Q ss_pred CCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcC--CCcc
Q psy6631 252 TKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP--DGIT 329 (704)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p--~~~~ 329 (704)
.++.- ..+.. -....+.|+...++|+++|+.|+|+++|+|+|+|||.|||+.||++|.+..++++ +...
T Consensus 385 ~~s~~-l~~~~--------~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~ 455 (696)
T KOG0475|consen 385 SSSTS-LPETT--------VYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNL 455 (696)
T ss_pred ccccc-Ccccc--------hHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33211 00000 1123567888899999999999999999999999999999999999988877765 3322
Q ss_pred CCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCCC
Q psy6631 330 HGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLPY 407 (704)
Q Consensus 330 ~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p~ 407 (704)
+| ...+.|+.||++||||.++|+|| |+|.+||+||+||++.+++|+|+|+++|.|+++.+. +++||+.++.+|+||
T Consensus 456 fg--~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~ 533 (696)
T KOG0475|consen 456 FG--LSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPF 533 (696)
T ss_pred cc--hhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCC
Confidence 22 24679999999999999999999 999999999999999999999999999999999885 589999999999999
Q ss_pred CCCCCCCCccccccccccccccc--eEEecCC-CCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCC
Q psy6631 408 LPDLLPSSSGIYNVYVEDFMVRD--VKYIWNN-MTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYL 484 (704)
Q Consensus 408 l~~~~~~~~~l~~~~V~diM~~~--v~~v~~~-~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~ 484 (704)
++....-++-+ ...+-+-|+.+ ...++.+ +|++|+..+++++ .+++||||-++ ++.+++|++.++
T Consensus 534 l~~k~e~~~t~-~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t-~~sgfpvvl~~----------~sq~lvGfv~rr 601 (696)
T KOG0475|consen 534 LDSKSEFSSTL-AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDT-DFSGFPVVLSE----------DSQRLVGFVLRR 601 (696)
T ss_pred cccccccccch-hhhhhchhcCchhheeccccceeHHHHHHHHhhc-ccCCceEEEcc----------ccceeEEEEchH
Confidence 97533222111 12233333333 4555555 9999999999998 78999999666 457999999988
Q ss_pred CCCCC------Cc-------------------ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCC
Q psy6631 485 PDLLP------SS-------------------SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSG 539 (704)
Q Consensus 485 dll~~------~~-------------------~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~ 539 (704)
|+... .+ ........+++|.-.+.++..+++.+-+.+++. .-.+...-|..+++
T Consensus 602 ~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~-~lg~~~~~v~~~G~ 680 (696)
T KOG0475|consen 602 NLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFR-KLGLRQILVTKNGI 680 (696)
T ss_pred HHHHHHhhhccccccceecccccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHH-hhCceEEEEccCCe
Confidence 88511 00 011234568999999999999999999999994 44455667777788
Q ss_pred ceEEeehHHHhhh
Q psy6631 540 KFEQMEIKRREER 552 (704)
Q Consensus 540 ~~~~i~~~~~~~~ 552 (704)
.+|.++++|....
T Consensus 681 l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 681 LLGIITKKDCLRH 693 (696)
T ss_pred eEeeeehHHHHHh
Confidence 8898888876543
No 3
>KOG0474|consensus
Probab=100.00 E-value=4e-61 Score=524.02 Aligned_cols=490 Identities=23% Similarity=0.271 Sum_probs=372.3
Q ss_pred cccccchhhhHhhhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCC
Q psy6631 22 KGHFTVEEQEVLKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEG 86 (704)
Q Consensus 22 ~~~~~~~~~~v~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~ 86 (704)
|+|+|+.. +.+.+..||++ +++..++| |.|+|+|+.++|.-+ ..+ +..++.+..+.+|
T Consensus 172 K~YLNGV~---iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S---~~~-r~~~r~fr~FrnD 244 (762)
T KOG0474|consen 172 KCYLNGVK---IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGS---TSL-RKDWRWFRYFRND 244 (762)
T ss_pred hhhhcCcc---CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCc---cch-hhhhhhhhhhccc
Confidence 67777654 56778888988 44444444 999999999998653 222 2333333333332
Q ss_pred --------CcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccc------cccccc
Q psy6631 87 --------RAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEET------MRAFFP 152 (704)
Q Consensus 87 --------~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~------~~~~F~ 152 (704)
||+||||||+|+||+||+|||+||..++|+...+||.||++++++++.|.+..++..+.. -...|.
T Consensus 245 rdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~ 324 (762)
T KOG0474|consen 245 RDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFD 324 (762)
T ss_pred chhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEec
Confidence 489999999999999999999999999999999999999999999999944433232221 011222
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhh-hccc
Q psy6631 153 TNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLG-LGKY 231 (704)
Q Consensus 153 ~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~-~G~~ 231 (704)
. |+....|+..|+++|+++|+++|++|++|+.++.+...+++++.+ -+..++++.++++++++++.|-.. +..+
T Consensus 325 v-f~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~~~k----~k~~kvlea~~Vs~~ts~~af~l~~l~~C 399 (762)
T KOG0474|consen 325 V-FDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYNYEK----GKIGKVLEALLVSLVTSVLAFGLPFLADC 399 (762)
T ss_pred c-cCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHhccC----chHHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 2 222345788999999999999999999999998887776665432 244578899999999998765322 2221
Q ss_pred cCCCCCcHHHHHHhhhcCccCCCCcc--------hhhHhhhhhcccC-CcchHHHHHHHHHHHHHHHHHHhhCCcccccc
Q psy6631 232 MAGDLNTHDQLSSLFSNFTWTKGHFT--------VEEQEVLKHWTTR-NTDVFVSLACFMLYTYIFSIIASTIPVPSGSF 302 (704)
Q Consensus 232 ~~g~l~~~~~i~~lf~~~~~~~~~~~--------~~~~~i~~~~~~~-~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF 302 (704)
.+++...+.. -+..+.|.+++|+ .+|+++.+.+..+ +++...+|.+|+++.++++++|+|..+|+|+|
T Consensus 400 --~P~~~~~~~~-~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlF 476 (762)
T KOG0474|consen 400 --QPCPPSITEG-QCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVPSGLF 476 (762)
T ss_pred --CCCCCCcccc-cCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhcccccccch
Confidence 1111000000 1111345555553 3566666655433 67788899999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCchhHHHHHHHH
Q psy6631 303 IPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAV 381 (704)
Q Consensus 303 ~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~~~lPimia~ 381 (704)
+|++.+||++||++|.++..++ .++|+.||++||||++||+.| |+|.+||++|+| +..+++|+|++-
T Consensus 477 iP~iL~GAa~GRlvg~~l~~~~-----------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvL 544 (762)
T KOG0474|consen 477 IPVILTGAAYGRLVGMLLGSYT-----------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVL 544 (762)
T ss_pred hHHHHhhHHHHHHHHHHHHHhh-----------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHH
Confidence 9999999999999999998875 369999999999999999876 999999999999 778999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecC
Q psy6631 382 LISNAVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES 461 (704)
Q Consensus 382 ~is~~va~~l~~siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~ 461 (704)
++|.++++.+++++||.++..|++|+++..++ .-+++++++|+|+++++++..-+++....++++.+ +|++|||||+
T Consensus 545 liaK~VGD~FNegiYd~~i~LkgvP~Le~~pe--~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t-~HngFPVvd~ 621 (762)
T KOG0474|consen 545 LIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPE--PYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKST-NHNGFPVVDE 621 (762)
T ss_pred HHHHHHHhhhhhhhHHHhhhccCCccccCCCc--hHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhc-CcCCCccccC
Confidence 99999999999999999999999999997644 45779999999999999999999999999999998 8999999997
Q ss_pred ccccccCCCCcCCeeEEEeecCCCCCC---------C-------------------------------Cccccccccccc
Q psy6631 462 SVAALLQPSLYDSIILIKKLPYLPDLL---------P-------------------------------SSSGIYNVYVED 501 (704)
Q Consensus 462 ~~~~~~~p~~~~~~~LvG~Is~~dll~---------~-------------------------------~~~~~~~~~V~d 501 (704)
. ...+.+++.|.|-+.+++. . .++....+....
T Consensus 622 ~-------~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p 694 (762)
T KOG0474|consen 622 P-------PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHP 694 (762)
T ss_pred C-------CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhcccccc
Confidence 6 1112256778776666640 0 000112245578
Q ss_pred ccccCceEEeCCCCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHh
Q psy6631 502 FMVRDVKYIWNNMTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 502 vM~~~v~tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
+|++.+.+|.++|++..+..++.+ .+++-|+|.. ++.++.++|+|..
T Consensus 695 ~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~--~~~~gilTR~D~~ 743 (762)
T KOG0474|consen 695 FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKT--NRVVGILTRKDLA 743 (762)
T ss_pred ccCCCCcccCcccchHHHHHHHHHhcceeEEEecCC--CceeEEEehhhhh
Confidence 899999999999999999999955 4555455543 3446777777754
No 4
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=5.5e-57 Score=520.62 Aligned_cols=417 Identities=14% Similarity=0.156 Sum_probs=342.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. . . +++ + ..|- .||+|||+||+||||+||++|++|+++++|+.++++++++||++|+
T Consensus 143 ~~ga~~~~~~~~~~~-~---~-~~~--~-r~l~-~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~ 213 (574)
T PRK01862 143 QLAALAASLVGRFAH-F---D-PPR--L-RLLV-ACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVAN 213 (574)
T ss_pred HHHHHHHHHHHHHhC-C---C-HHH--H-HHHH-HHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 999999999999874 1 1 111 1 1122 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+.+ .++ .|.++. ..+++..++++++++|++||++|.+|+++.++..+++++ ++.+++++
T Consensus 214 ~v~~~~~g----~~~---~~~~~~--~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~-------~~~~~~~~ 277 (574)
T PRK01862 214 IVMREFAG----YQP---PYEMPV--FPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR-------LPVPLPVR 277 (574)
T ss_pred HHHHHHcC----CCc---eeeCCC--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCchhHH
Confidence 99998742 333 455432 224678899999999999999999999998877543331 33456788
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
++++|+++|++ ++|..+|.+ ++.+++++.+ ...+..++.++++|+++|
T Consensus 278 ~~~~gl~~g~l~~~~p~~~g~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~~~t 327 (574)
T PRK01862 278 LALGGLLVGVISVWVPEVWGNG-------YSVVNTILHA-----------------------PWTWQALVAVLVAKLIAT 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHHHH
Confidence 89999999976 468777753 6777666542 122345667788999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.|||+|+|++++||++|+++|.+++.++|.. ...|+.|+++||+|++++++| |++++++++|||
T Consensus 328 ~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~--------~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt 399 (574)
T PRK01862 328 AATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGH--------TSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMT 399 (574)
T ss_pred HHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888763 246788999999999999999 899999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHH
Q psy6631 369 GQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLL 447 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l 447 (704)
|++++++|+|+++++||++++.++ +|+|+.++++++.+ .....+..++|+|+|+++..+++++++++|+.+.+
T Consensus 400 ~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~------~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l 473 (574)
T PRK01862 400 LSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE------AERERLRTTQMRELIQPAQTVVPPTASVADMTRVF 473 (574)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc------chhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHH
Confidence 999999999999999999999885 79999999988632 23456788999999999999999999999999999
Q ss_pred HhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC--cccccccccccccccCceEEeCCCCHHHHHHHhHh
Q psy6631 448 KENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE 525 (704)
Q Consensus 448 ~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~ 525 (704)
.++ +.+.+||+|++ ++++|+|+.+|+.+.. +.+..+.+++|+|+++++++++|+++.|+.+.|.
T Consensus 474 ~~~-~~~~~~VvD~~------------g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~- 539 (574)
T PRK01862 474 LEY-PVKYLYVVDDD------------GRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPFPLLTPDMPLGDALEHFM- 539 (574)
T ss_pred HhC-CCceEEEEcCC------------CeEEEEEEHHHHHHHhhcccccccchHHHhccCCCeeECCCCCHHHHHHHHH-
Confidence 887 78899999987 7999999999987532 2222346899999999999999999999999995
Q ss_pred cCCCceeecccCC---CceEEeehHHHhh
Q psy6631 526 NRSLRVFPLVESS---GKFEQMEIKRREE 551 (704)
Q Consensus 526 ~~rl~Vvpvv~~~---~~~~~i~~~~~~~ 551 (704)
..+.+.+||+|++ +.+|.+++.|..+
T Consensus 540 ~~~~~~lpVVd~~~~~~liGvIt~~DIl~ 568 (574)
T PRK01862 540 AFQGERLPVVESEASPTLAGVVYKTSLLD 568 (574)
T ss_pred hcCCCeeeeEeCCCCCeEEEEEEHHHHHH
Confidence 4666677887653 4577777776543
No 5
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=8e-49 Score=436.51 Aligned_cols=325 Identities=53% Similarity=0.902 Sum_probs=257.4
Q ss_pred hhhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhh
Q psy6631 33 LKHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLK 97 (704)
Q Consensus 33 ~~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF 97 (704)
.+++++.|+.+ +++..+++ |+|+++++.++|++... ....++...|+. |- .||+|||+||+|
T Consensus 87 ~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~-~~~~~~~~~rr~-Li-~~GaaAGlaAaF 163 (426)
T cd03683 87 LPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFF-SGIYENESRRME-ML-AAACAVGVACTF 163 (426)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccc-cccccCHHHHHH-HH-HhHhhhhhHHhc
Confidence 35666677666 44444333 99999999999877311 110012111111 22 269999999999
Q ss_pred cccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHH
Q psy6631 98 GALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCG 177 (704)
Q Consensus 98 ~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~G 177 (704)
||||||++|++||++++|+.+++|+++++|++|+++++++..++.+.......|......+.+++..++++++++|++||
T Consensus 164 ~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~G 243 (426)
T cd03683 164 GAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICG 243 (426)
T ss_pred CCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654443321011222111233577899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcc
Q psy6631 178 FGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFT 257 (704)
Q Consensus 178 l~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~ 257 (704)
++|.+|++.+++..+++++.++.+++.+.++++++++++++++++.||.
T Consensus 244 l~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~p~------------------------------- 292 (426)
T cd03683 244 LLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTFPF------------------------------- 292 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999998877765544444456678899999999998777761
Q ss_pred hhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCc
Q psy6631 258 VEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPI 337 (704)
Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~ 337 (704)
..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|++. |..+....
T Consensus 293 ------------------~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~-~~~~~~~~ 353 (426)
T cd03683 293 ------------------LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGI-RGGISNPI 353 (426)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCccc-ccCCCCCc
Confidence 12446788999999999999999999999999999999999999999988432 11122346
Q ss_pred chHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCC
Q psy6631 338 IPGGYATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPD 410 (704)
Q Consensus 338 ~p~~yAlvGmaAf~aav~~~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~ 410 (704)
+|+.||++||+|++++++|++++++|++||||++++++|+|+++++||++++.+++|+||.+++.|++||++|
T Consensus 354 ~~~~~alvGmaa~~a~~~ra~~t~vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 354 GPGGYAVVGAAAFSGAVTHTVSVAVIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHheeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 8999999999999999999877778999999999999999999999999999998999999999999999985
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=1.8e-48 Score=435.62 Aligned_cols=350 Identities=29% Similarity=0.433 Sum_probs=264.0
Q ss_pred hhhccccceE--Eeeeeehh-------------hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhc
Q psy6631 34 KHWTTRNTDV--FVSLACFM-------------LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKG 98 (704)
Q Consensus 34 ~~~~~~~~~i--~~~~~~~~-------------h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~ 98 (704)
+++++.|+.+ +++..+++ |+|+++|+.++|++... . .+...|+..+ .||+|||+||+||
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~---~-~~~~~~r~li--~~GaaAGlaAaF~ 144 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKY---R-RNEAKRREIL--SAAAAAGVAVAFG 144 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHh---c-cCHHHHHHHH--HHHHhhhhHHhcC
Confidence 5556666666 55555554 99999999999876310 0 1221122222 3699999999999
Q ss_pred ccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHH
Q psy6631 99 ALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGF 178 (704)
Q Consensus 99 APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl 178 (704)
|||||++|++||+.++|+.+++|+++++|++|+++++.+..+ +.+.. ..|.+++ ..+++..|+++++++|++||+
T Consensus 145 APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~~-~~~~~--~~f~~~~--~~~~~~~~l~~~i~lGi~~Gl 219 (445)
T cd03684 145 APIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNPF-GTGRL--VLFEVEY--DRDWHYFELIPFILLGIFGGL 219 (445)
T ss_pred CccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhccc-CCCCc--eEEeccC--CCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987542 22121 1343332 235678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHHh--hhhhccccCCCCCcHHHHHHhhhcCccCCCCc
Q psy6631 179 GGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVSF--PLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHF 256 (704)
Q Consensus 179 ~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~f--P~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~ 256 (704)
+|.+|+++++++.+++++.+ .+.++++++++++++++++.+ |+..|. +++.++++|++|...++..
T Consensus 220 ~g~lf~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~l~~~~p~~~~~-------g~~~i~~l~~~~~~~~~~~ 287 (445)
T cd03684 220 YGAFFIKANIKWARFRKKSL-----LKRYPVLEVLLVALITALISFPNPYTRLD-------MTELLELLFNECEPGDDNS 287 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHHHHhChHHHccc-------hhhHHHHHHhcCCCccccc
Confidence 99999999998876655322 134678899999999998765 444443 4788899998754322110
Q ss_pred chhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHh---cCCCccCC--
Q psy6631 257 TVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLR---FPDGITHG-- 331 (704)
Q Consensus 257 ~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~---~p~~~~~~-- 331 (704)
..+ .............+..+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.+ +|+...++
T Consensus 288 ~~~--~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~ 365 (445)
T cd03684 288 LCC--YRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACC 365 (445)
T ss_pred ccc--cccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccc
Confidence 000 00000000111245667778899999999999999999999999999999999999999876 35431000
Q ss_pred -CccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCCCC
Q psy6631 332 -KFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLPYL 408 (704)
Q Consensus 332 -~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p~l 408 (704)
......+|+.||++||+||+++++| |+|+++|++||||++++++|+|+++++||++++.++ +|+||.+++.|++||+
T Consensus 366 ~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 366 TAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred cCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 0001357899999999999999999 899999999999999999999999999999999996 6999999999999986
No 7
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=1.8e-44 Score=400.71 Aligned_cols=292 Identities=30% Similarity=0.445 Sum_probs=230.2
Q ss_pred hhhhhhcccccccccCCCccc------ccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEIT------GEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFF 125 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~------g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~ 125 (704)
|+|+++++.+++++....+.. -.+...|+..+ .+|+|||+||+|||||||++|++||+.++|+.+++|++++
T Consensus 113 ~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll--~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~ 190 (416)
T cd01036 113 HLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFL--VAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFF 190 (416)
T ss_pred HHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHH--HHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHH
Confidence 999999999998663111100 01111122222 2589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccc---ccc--ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy6631 126 TAVCGATVFRLLAVWFYNEETMR---AFF--PTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKM 200 (704)
Q Consensus 126 aav~a~~v~~~l~~~~~~~~~~~---~~F--~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~ 200 (704)
+|++|+++++.+..+........ ..| ..++..+.+++..|+++++++|++||++|.+|+++++++.+++++.++
T Consensus 191 as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~- 269 (416)
T cd01036 191 AALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLF- 269 (416)
T ss_pred HHHHHHHHHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 99999999998865321111000 001 112222345778999999999999999999999999988776654321
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHH
Q psy6631 201 NAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLAC 280 (704)
Q Consensus 201 ~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~ 280 (704)
.+.++++++++++++++++++.|. ..+++
T Consensus 270 -~~~~~~~~~~~~~~~~i~~~~~~~--------------------------------------------------~~l~~ 298 (416)
T cd01036 270 -RKTARYRVLEPVLFTLIYSTIHYA--------------------------------------------------PTLLL 298 (416)
T ss_pred -ccccchhHHHHHHHHHHHHHHHHH--------------------------------------------------HHHHH
Confidence 123556889999999998877550 12446
Q ss_pred HHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhH
Q psy6631 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TIS 359 (704)
Q Consensus 281 ~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is 359 (704)
+++.|+++|++|+++|+|||+|+|+|++||++|+++|.+++.++|...++.+.....+|+.||++||+|++++++| |+|
T Consensus 299 ~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt 378 (416)
T cd01036 299 FLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFS 378 (416)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHh
Confidence 7789999999999999999999999999999999999999999886433322223468999999999999999987 899
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHH
Q psy6631 360 VSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYD 397 (704)
Q Consensus 360 ~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~ 397 (704)
+++|++||||++++++|+|+++++||++++.+++|+||
T Consensus 379 ~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~ 416 (416)
T cd01036 379 ICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416 (416)
T ss_pred hhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999999999999999999996
No 8
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.3e-43 Score=398.51 Aligned_cols=294 Identities=29% Similarity=0.417 Sum_probs=227.1
Q ss_pred hhhhhhcccccccccCCCc----cc--ccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSE----IT--GEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFF 125 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~----i~--g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~ 125 (704)
|+|+++++.+++++...-. .. -+++..++. +- .+|+|||+||+|||||||++|++||+.++|+.+.+|+.++
T Consensus 154 ~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-li-~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~ 231 (466)
T cd03685 154 HIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRD-FV-TCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFF 231 (466)
T ss_pred hHHHHHHHHHhhccccccccchhhhhhccCHHHHHH-HH-HHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHH
Confidence 9999999999974310000 00 001111111 11 2589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccc--------ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6631 126 TAVCGATVFRLLAVWFYNEETMRAFF--------PTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRN 197 (704)
Q Consensus 126 aav~a~~v~~~l~~~~~~~~~~~~~F--------~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~ 197 (704)
+|++|+++++.+...++.... ..| .... ...+++..|+++++++|++||++|.+|++.+++..+++++.
T Consensus 232 ~s~ias~va~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~ 308 (466)
T cd03685 232 SSMIVTFTLNFFLSGCNSGKC--GLFGPGGLIMFDGSS-TKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI 308 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCCc--cccCCccceeccccc-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987654322110 012 2111 12357789999999999999999999999999887655432
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHH
Q psy6631 198 KKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVS 277 (704)
Q Consensus 198 ~~~~~~l~~~~~l~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 277 (704)
+ +.....+.+.+++++++++.+.+ ...
T Consensus 309 ~---~~~~~~~~l~~~lv~~~~~~~~~--------------------------------------------------~~~ 335 (466)
T cd03685 309 N---HKGKLLKVLEALLVSLVTSVVAF--------------------------------------------------PQT 335 (466)
T ss_pred c---cccchhHHHHHHHHHHHHHHHHH--------------------------------------------------HHH
Confidence 1 10112234444444444443322 012
Q ss_pred HHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-
Q psy6631 278 LACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH- 356 (704)
Q Consensus 278 Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~- 356 (704)
+++++++|+++|++|+|+|+|||+|+|+|++||++|+++|.+++.++|.. ..+|+.||++||+||+++++|
T Consensus 336 l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~--------~~~~~~~aliGmaa~lag~~ra 407 (466)
T cd03685 336 LLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFT--------SIDPGLYALLGAAAFLGGVMRM 407 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcccc--------CCCchHHHHHHHHHHHhHHhhh
Confidence 34566789999999999999999999999999999999999999887642 368999999999999999988
Q ss_pred hhHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCCC
Q psy6631 357 TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPDL 411 (704)
Q Consensus 357 ~is~~viv~ElTG~~~~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~~ 411 (704)
|+|+++|++||||++++++|+|+++++||++++.+++|+||.+++.|++||+.+-
T Consensus 408 Plt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 408 TVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 8999999999999999999999999999999999999999999999999999863
No 9
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.3e-42 Score=385.48 Aligned_cols=289 Identities=17% Similarity=0.200 Sum_probs=237.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. . . ++ ++ .+- .||+|||+||+||||++|++|++|++.++++.+++.|+++||++|+
T Consensus 125 ~iGa~~g~~~~~~~~--~--~--~~--~r-~li-~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~ 194 (418)
T PRK01610 125 LLAALAASCFAQRFT--P--R--QE--WK-LWI-ACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVAL 194 (418)
T ss_pred HHHHHHHHHHHHHhC--C--h--HH--HH-HHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999873 1 1 11 11 122 3799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+. +++++ +|.++. ...++..++++++++|++||++|.+|++..++..++++ ..+.+++++
T Consensus 195 ~v~~~~~---g~~~~---~~~i~~--~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~-------~~~~~~~~~ 259 (418)
T PRK01610 195 LTTNLLN---GSDAL---LYNVQL--SVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFV-------SLKLAPPWQ 259 (418)
T ss_pred HHHHHHc---CCCCC---eeecCC--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccccchhHH
Confidence 9999873 22222 455442 22467889999999999999999999999887654332 134467789
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+.++|+++|++ .+|..+|.+ ++.++.++.+ ...+..++.++++|+++|
T Consensus 260 ~~lggli~g~l~~~~p~~~G~G-------~~~i~~~~~~-----------------------~~~~~~l~~l~l~K~~~t 309 (418)
T PRK01610 260 LALGGLIVGLLSLFTPAVWGNG-------YSVVQSFLTA-----------------------PPLLMLIAGIFLCKLLAV 309 (418)
T ss_pred HHHHHHHHHHHHHHhhHHhCCc-------HHHHHHHHcC-----------------------ChhHHHHHHHHHHHHHHH
Confidence 99999999986 468777653 6666655532 122345666789999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.+||+|+|++++||++|.++|.+++.++|+. ...+..|+++||+|++++++| |++++++++|||
T Consensus 310 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~--------~~~~~~~a~vGmaA~laa~~~aPltaivl~~Elt 381 (418)
T PRK01610 310 LASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDG--------EEITLLLGLTGMATLLAATTHAPIMSTLMICEMT 381 (418)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888753 235789999999999999999 899999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhc-CCChHHHHHHHh
Q psy6631 369 GQITHIIPVMIAVLISNAVAALL-QPSLYDSIILIK 403 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l-~~siy~~~l~~r 403 (704)
|++++++|+|+++++||++++.+ ++|+|+.++..+
T Consensus 382 g~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 382 GEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 99999999999999999999988 579999998765
No 10
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.8e-41 Score=369.78 Aligned_cols=283 Identities=28% Similarity=0.395 Sum_probs=223.3
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+.+++.++|++. .. +++..| . +- .+|+|||+||+|||||+|++|++|++.++++.+.++++++||++|+
T Consensus 66 ~iga~i~~~~~~~~~----~~-~~~~~r-~-l~-~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~ 137 (355)
T PF00654_consen 66 QIGAAIGSWLGRRFR----LS-RNETRR-L-LL-AAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVAT 137 (355)
T ss_dssp HHHHHHHHHHHHHTT-------CHHHHH-H-HH-HHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc----cc-chHHHh-H-HH-HHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHH
Confidence 999999999998873 22 111112 2 22 2589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccc-cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFP-TNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFL 210 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~-~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l 210 (704)
++++.+.+ .++ .|. ++. ..++++.|+++++++|++||++|.+|++..++..+++++. + +++.++++
T Consensus 138 ~v~~~~~~----~~~---~f~~~~~--~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~---~-~~~~~~~l 204 (355)
T PF00654_consen 138 LVSRLLFG----NHP---IFGSVPQ--LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKL---K-RLKIPPIL 204 (355)
T ss_dssp HHHHHHHT----SS----SS---TT-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-TTCHHHHH
T ss_pred HHHHHHcC----cCc---ccccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-ccccchHH
Confidence 99999854 232 354 321 2357889999999999999999999999999987665532 2 23445677
Q ss_pred HHHHHHHHHHHHH--hhh--hhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHH
Q psy6631 211 YPGIVVLLATSVS--FPL--GLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTY 286 (704)
Q Consensus 211 ~p~l~gllvg~l~--fP~--~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~ 286 (704)
++++++++++++. +|+ .+|. +++.++.+|++.. .......++.+++.|+
T Consensus 205 ~~~i~gl~~g~l~~~~p~~~~~g~-------G~~~i~~ll~~~~--------------------~~~~~~~l~~~~~~K~ 257 (355)
T PF00654_consen 205 RPVIGGLVIGLLAFFFPEGSVLGS-------GYELIQSLLSGSP--------------------PWFSLGSLLLLFLLKF 257 (355)
T ss_dssp HHHHHHHHHHHHHHSSGG-SGSSS-------STTHHHHHCTT------------------------S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccCC-------cHHHHHHHHcCCc--------------------chhhHHHHHHHHHHHH
Confidence 9999999999875 465 5554 3678888876421 1234668889999999
Q ss_pred HHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHH
Q psy6631 287 IFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMF 365 (704)
Q Consensus 287 ~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ 365 (704)
++|++|+++|+|||+|+|+|+|||++|+++|.+++..+|+.. ..+|..|+++||+|++++++| |++++++++
T Consensus 258 ~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~-------~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~ 330 (355)
T PF00654_consen 258 LATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGIS-------SVDPGVYALVGMAAFLAAVTRAPLTAIVLVL 330 (355)
T ss_dssp HHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG--------T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcC-------CCchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999988532 237999999999999999999 899999999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHh
Q psy6631 366 EMTGQITHIIPVMIAVLISNAVAA 389 (704)
Q Consensus 366 ElTG~~~~~lPimia~~is~~va~ 389 (704)
|+||++++++|+|+++++||.+++
T Consensus 331 Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 331 ELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999986
No 11
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.1e-40 Score=369.39 Aligned_cols=288 Identities=21% Similarity=0.276 Sum_probs=237.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++.. .. . .++. +- .+|+|||++++||||++|++|++|++.++++.+.+++++++|++|+
T Consensus 111 ~iga~ig~~~~~~~~~----~~-~--~~~~-l~-~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~ 181 (402)
T cd01031 111 QIGAAIGQGVSKWFKT----SP-E--ERRQ-LI-AAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAAD 181 (402)
T ss_pred HHHHHHHHHHHHHhcC----CH-H--HHHH-HH-HHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 9999999999987631 10 1 1111 11 3589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+.+ +++ .|..+. ...++..|+++++++|++||++|.+|++..++..+++++ +.+.+++++
T Consensus 182 ~v~~~~~~----~~~---~~~~~~--~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~------~~~~~~~~~ 246 (402)
T cd01031 182 FVSRLFFG----LGP---VLSIPP--LPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRK------LKKLPRELR 246 (402)
T ss_pred HHHHHHcC----CCc---eEecCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cccCChhHH
Confidence 99997632 332 344321 224678999999999999999999999998877654432 124567889
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+.+++++++++ ++|+..|.+ ++.++.++++ ...+..++.+++.|+++|
T Consensus 247 ~~l~gl~~~~~~~~~p~~~g~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~~~t 296 (402)
T cd01031 247 VLLPGLLIGPLGLLLPEALGGG-------HGLILSLAGG-----------------------NFSISLLLLIFVLRFIFT 296 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHHHH
Confidence 99999999876 458777653 6666666532 123456677889999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.+||+|+|++++||++|+++|.+++.++|.. ..+|+.|+++||+|++++++| |++++++++|+|
T Consensus 297 ~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~--------~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Elt 368 (402)
T cd01031 297 MLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIP--------ISAPATFAIAGMAAFFAAVVRAPITAIILVTEMT 368 (402)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcc--------cccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999988853 368999999999999999999 799999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhc-CCChHHHHHH
Q psy6631 369 GQITHIIPVMIAVLISNAVAALL-QPSLYDSIIL 401 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l-~~siy~~~l~ 401 (704)
|++++++|+|+++++||++++.+ ++|+||.++|
T Consensus 369 g~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 369 GNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 99999999999999999999998 5799999874
No 12
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.3e-39 Score=358.88 Aligned_cols=274 Identities=20% Similarity=0.220 Sum_probs=224.3
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. . . ++ .|+ .+- .||+|||+||+|||||+|++|++|+++++++.+.++++++||++|+
T Consensus 110 ~iGa~i~~~~~~~~~-~---~--~~-~~r-~li-~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~ 180 (388)
T cd01033 110 EVGALLAQRFSDWLG-L---T--VA-DRR-LLV-ACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAA 180 (388)
T ss_pred HHHHHHHHHHHHHhC-C---C--HH-HHH-HHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999999998874 1 1 11 111 121 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+. +.++ .|..+ ..++++.++++++++|++||++|.+|++.+++..+++++ .++++++
T Consensus 181 ~v~~~~~----g~~~---~f~~~---~~~~~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~--------~~~~~~~ 242 (388)
T cd01033 181 AVASLLK----GDHP---IYDIP---PMQLSTPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPK--------GKRILWQ 242 (388)
T ss_pred HHHHHhC----CCCc---eeecC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHH
Confidence 9999873 2343 45433 123457899999999999999999999998877643221 1234567
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+.+++++++++ ++|+..|.+ ++.++.++++ ......++.++++|+++|
T Consensus 243 ~~l~gl~~g~~~~~~p~~~G~G-------~~~i~~~~~~-----------------------~~~~~~ll~~~~~K~~~t 292 (388)
T cd01033 243 MPLAFLVIGLLSIFFPQILGNG-------RALAQLAFST-----------------------TLTLSLLLILLVLKIVAT 292 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHHHH
Confidence 88888888875 568777653 6777766653 122345667789999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.+||.|.|++++||++|+++|.+++.++|+ .++..|+++||+|++++++| |++++++++|+|
T Consensus 293 ~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~----------~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Elt 362 (388)
T cd01033 293 LLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP----------LSIAAFALIGAAAFLAATQKAPLTALILVLEFT 362 (388)
T ss_pred HHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc----------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887764 46889999999999999998 899999999999
Q ss_pred C-CchhHHHHHHHHHHHHHHHhhcC
Q psy6631 369 G-QITHIIPVMIAVLISNAVAALLQ 392 (704)
Q Consensus 369 G-~~~~~lPimia~~is~~va~~l~ 392 (704)
| +++.++|+|+++++||.+++.++
T Consensus 363 g~~~~~l~Pl~ia~~~a~~vs~~~~ 387 (388)
T cd01033 363 RQNPLFLIPLMLAVAGAVAVSRFIL 387 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 99999999999999999998664
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-39 Score=360.24 Aligned_cols=292 Identities=23% Similarity=0.315 Sum_probs=234.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccc-cchHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVY-FAIRNYWRGFFTAVCG 130 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~-~~~~~~~~~f~aav~a 130 (704)
|+|+.+++.+++++. ... ++ + ..+- .+|+|||+||+|||||+|++|++|++.+. ++.++++|+++||++|
T Consensus 138 qiga~~g~~~~~~l~-~~~----~~-~--r~Ll-~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va 208 (443)
T COG0038 138 QIGAAIGSLLGRLLK-LSR----ED-R--RILL-AAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVA 208 (443)
T ss_pred HHHHHHHHHHHHHhC-CCH----HH-H--HHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 899998888888774 110 11 1 1111 25899999999999999999999999977 9999999999999999
Q ss_pred HHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhH
Q psy6631 131 ATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFL 210 (704)
Q Consensus 131 ~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l 210 (704)
+.+.+.+.+ ++. .+.+.. ...+++++++.|+++|+++|++|.+|.+.......++ ++.+.++++
T Consensus 209 ~~v~~~~~~----~~~---~~~~~~--~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~-------~~~~~~~~~ 272 (443)
T COG0038 209 LLVAGLFGG----PHF---LLPIVT--TPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFF-------RRLPLPPLL 272 (443)
T ss_pred HHHHHHcCC----CCc---eeeccc--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcchHHH
Confidence 999998642 232 233222 1235689999999999999999999999886553322 234556889
Q ss_pred HHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHH
Q psy6631 211 YPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIF 288 (704)
Q Consensus 211 ~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~ 288 (704)
++++++++++++ .+|..+|.+ +..++..+++ ......++.+++.|+++
T Consensus 273 ~~~~~g~l~g~~~l~~P~~lg~G-------~~~~~~~~~~-----------------------~~~~~~l~~l~~~K~l~ 322 (443)
T COG0038 273 RPALGGLLVGALGLLFPEVLGNG-------YGLIQLALAG-----------------------EGGLLVLLLLFLLKLLA 322 (443)
T ss_pred HHHHHHHHHHHHHHhchhhhCCC-------ccHHHHHHcc-----------------------CccHHHHHHHHHHHHHH
Confidence 999999999976 578888764 4444434322 11111166788999999
Q ss_pred HHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH
Q psy6631 289 SIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM 367 (704)
Q Consensus 289 t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El 367 (704)
|.+|+|+|.|||+|+|++++||++|.++|.+++.++|.. ...+..|+++||+|++++++| |++++++++||
T Consensus 323 t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~--------~~~~~~~al~Gm~a~la~~~~aPlta~vlv~Em 394 (443)
T COG0038 323 TLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPS--------ILEPGLFALLGMAAFLAATTRAPLTAIVLVLEM 394 (443)
T ss_pred HHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCcc--------ccchHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999999999999999999999999999998863 247889999999999999998 89999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHhcCC
Q psy6631 368 TGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIKKLP 406 (704)
Q Consensus 368 TG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r~~p 406 (704)
||+++.++|+|+++++||.+++.+. +++|++.+++++.+
T Consensus 395 Tg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~ 434 (443)
T COG0038 395 TGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAP 434 (443)
T ss_pred hCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCch
Confidence 9999999999999999999999875 69999999998765
No 14
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=358.50 Aligned_cols=294 Identities=19% Similarity=0.242 Sum_probs=231.5
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccc--cchHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVY--FAIRNYWRGFFTAVC 129 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~--~~~~~~~~~f~aav~ 129 (704)
|+|+++++.+++++.. .. .. .++. +- .+|+|||+||+||||++|++|++|++.++ ++.++++++++++++
T Consensus 118 ~iGa~ig~~~~~~~~~---~~--~~-~~~~-li-~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~ 189 (438)
T PRK05277 118 QMGGNIGRMVLDIFRL---RS--DE-ARHT-LL-AAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIM 189 (438)
T ss_pred HHHHHHHHHHHHHccc---CC--HH-HHHH-HH-HHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999987731 01 11 1111 21 26899999999999999999999999874 477889999999999
Q ss_pred HHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh
Q psy6631 130 GATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF 209 (704)
Q Consensus 130 a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~ 209 (704)
|+++++++.. .++ .|..+.. + .++..++++++++|++||++|.+|+++..+..+++++.+ +....+++
T Consensus 190 a~~v~~~~~g----~~~---~~~~~~~-~-~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~---~~~~~~~~ 257 (438)
T PRK05277 190 ATIVFRLFNG----EQA---VIEVGKF-S-APPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLH---GGNKKRWV 257 (438)
T ss_pred HHHHHHHhcC----CCc---eEeccCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccccHHHH
Confidence 9999998742 232 3443211 1 245789999999999999999999999888765544211 11111223
Q ss_pred HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHH
Q psy6631 210 LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYI 287 (704)
Q Consensus 210 l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~ 287 (704)
+...+++++++.+ ++|...|.+ ++.+.+++++ ...+..++.++++|++
T Consensus 258 ~~~~i~gl~~g~l~~~~p~~~g~G-------~~~i~~~~~~-----------------------~~~~~~l~~~~~~K~i 307 (438)
T PRK05277 258 LMGGAVGGLCGLLGLLAPAAVGGG-------FNLIPIALAG-----------------------NFSIGMLLFIFVARFI 307 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCh-------HHHHHHHHcC-----------------------CchHHHHHHHHHHHHH
Confidence 3456777777765 467766653 6777655532 1234456678899999
Q ss_pred HHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy6631 288 FSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE 366 (704)
Q Consensus 288 ~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E 366 (704)
+|++|+|+|.+||.|.|++++||++|+++|.+++.++|.. ..+|..|+++||+|++++++| |++++++++|
T Consensus 308 ~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~--------~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~E 379 (438)
T PRK05277 308 TTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQY--------HIEPGTFAIAGMGALFAATVRAPLTGIVLVLE 379 (438)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcc--------cccHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998863 368999999999999999988 8999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHhhcC-CChHHHHHHHh
Q psy6631 367 MTGQITHIIPVMIAVLISNAVAALLQ-PSLYDSIILIK 403 (704)
Q Consensus 367 lTG~~~~~lPimia~~is~~va~~l~-~siy~~~l~~r 403 (704)
+||++++++|+|+++++||++++.++ +++||.++++.
T Consensus 380 ltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 380 MTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999999999985 79999998876
No 15
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=9.4e-39 Score=352.52 Aligned_cols=281 Identities=17% Similarity=0.218 Sum_probs=219.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++. ... +. .++. +- .||+|||+||+|||||+|++|++||+.++++.+.++++++++++|+
T Consensus 105 ~iga~i~~~~~~~~~-~~~----~~-~~r~-li-~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~ 176 (390)
T cd01034 105 QIGAAVMLAIGRRLP-KWG----GL-SERG-LI-LAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAG 176 (390)
T ss_pred HHHHHHHHHHHHHcc-cCc----hH-HHHH-HH-HHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998874 110 01 1111 22 3699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++.+.+. + .++ .|..+... .++..++++++++|++||++|.+|++...+..+++++.+ +++.+.+++++
T Consensus 177 ~~~~~~~---g-~~~---~f~~~~~~--~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~--~~~~~~~~~~~ 245 (390)
T cd01034 177 LVSLAVL---G-NYP---YFGVAAVA--LPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWV--RRFRRRRPVLF 245 (390)
T ss_pred HHHHHHc---C-CCC---ccCCCCCC--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccchhhHHH
Confidence 9988763 2 333 45443211 246788999999999999999999999988776544321 12234456677
Q ss_pred HHHHHHHHHHHHh--h-hhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSVSF--P-LGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIF 288 (704)
Q Consensus 212 p~l~gllvg~l~f--P-~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~ 288 (704)
+.+++++++++.+ | ..+|. +++.+++++++. .. ....++++|+++
T Consensus 246 ~~~~gl~~~~~~~~~~~~~~G~-------G~~~i~~~~~~~---------------------~~----~~~~~~l~K~i~ 293 (390)
T cd01034 246 AALCGLALALIGLVSGGLTFGT-------GYLQARAALEGG---------------------GG----LPLWFGLLKFLA 293 (390)
T ss_pred HHHHHHHHHHHHHhCCCccccC-------cHHHHHHHHhCC---------------------Cc----ccHHHHHHHHHH
Confidence 7888888876643 3 33333 367776665431 00 112457899999
Q ss_pred HHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH
Q psy6631 289 SIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM 367 (704)
Q Consensus 289 t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El 367 (704)
|++|+++|.|||.|.|++++||++|++++.++. . .+|..|+++||+|++++++| |++++++++|+
T Consensus 294 t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----~----------~~~~~~a~~G~aA~laa~~~aPlt~~vl~~El 359 (390)
T cd01034 294 TLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----S----------VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEM 359 (390)
T ss_pred HHHHHHcCCCcceechHHHHHHHHHHHHHHHhc----C----------CCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999999999999999998642 1 37889999999999999999 89999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHhhcC-CChHH
Q psy6631 368 TGQITHIIPVMIAVLISNAVAALLQ-PSLYD 397 (704)
Q Consensus 368 TG~~~~~lPimia~~is~~va~~l~-~siy~ 397 (704)
||++++++|+|+++++||++++.++ +|+||
T Consensus 360 t~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 360 TGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred hCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999885 68885
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.3e-35 Score=326.98 Aligned_cols=271 Identities=24% Similarity=0.326 Sum_probs=221.8
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchHHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGA 131 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~ 131 (704)
|+|+++++.+++++.. . .. .++. +- .+|+|||+||+||||++|++|++|++.++++.+.++++++++++|+
T Consensus 110 ~iGa~~g~~~~~~~~~----~--~~-~~~~-l~-~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~ 180 (383)
T cd00400 110 QIGAAIGSWLGRRLRL----S--RN-DRRI-LV-ACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAA 180 (383)
T ss_pred HHHHHHHHHHHHHhCC----C--HH-HHHH-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999987731 1 01 0111 11 2589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH
Q psy6631 132 TVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY 211 (704)
Q Consensus 132 ~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~ 211 (704)
++++.+.. .+. .|..+. ..+++..++++++++|++||++|.+|++.+++..+++++ .+.+++++
T Consensus 181 ~v~~~~~~----~~~---~~~~~~--~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~-------~~~~~~~~ 244 (383)
T cd00400 181 LVSRLLFG----AEP---AFGVPL--YDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRR-------LPIPPWLR 244 (383)
T ss_pred HHHHHHcC----CCC---eeeCCC--CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcHHHH
Confidence 99998743 232 454432 245788999999999999999999999999887654332 24567889
Q ss_pred HHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 212 PGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 212 p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
+++++++++.+ ++|+..|.+ ++.++..+++ ......++.+++.|+++|
T Consensus 245 ~~i~gll~~~~~~~~p~~~g~G-------~~~~~~~~~~-----------------------~~~~~~l~~~~~~K~~~t 294 (383)
T cd00400 245 PALGGLLLGLLGLFLPQVLGSG-------YGAILLALAG-----------------------ELSLLLLLLLLLLKLLAT 294 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc-------HHHHHHHHcC-----------------------ChhHHHHHHHHHHHHHHH
Confidence 99999998876 458777653 5555444321 223445667889999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+++|+|||.|.|++++||++|+++|.++..++|.. +.+|..|+++||+|++++++| |++++++++|+|
T Consensus 295 ~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~--------~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Elt 366 (383)
T cd00400 295 ALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGL--------VASPGAYALVGMAALLAAVLRAPLTAILLVLELT 366 (383)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcc--------cCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHh
Confidence 99999999999999999999999999999999988742 468999999999999999998 899999999999
Q ss_pred CCchhHHHHHHHHHHHH
Q psy6631 369 GQITHIIPVMIAVLISN 385 (704)
Q Consensus 369 G~~~~~lPimia~~is~ 385 (704)
|+++.++|+|+++++||
T Consensus 367 g~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 367 GDYSLLLPLMLAVVIAY 383 (383)
T ss_pred CChhhHHHHHHHHHhcC
Confidence 99999999999999986
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.1e-34 Score=319.01 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=211.7
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeec-cccchHHHHHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTT-VYFAIRNYWRGFFTAVCG 130 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~-~~~~~~~~~~~f~aav~a 130 (704)
|+|++++.++++++.. . .+ .++. + ..+|+|||++|+||||++|++|++|++. ++++.+.+++++++|+++
T Consensus 103 ~~ga~~~~~~~~~~~~----~--~~-~~r~-l-~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a 173 (378)
T cd03682 103 QMGGSLADAFGRVFKL----P--EE-DRRI-L-LIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVA 173 (378)
T ss_pred HHHHHHHHHHHHHhCC----C--HH-HHHH-H-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999987631 1 11 1111 2 1368999999999999999999999996 788999999999999999
Q ss_pred HHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhH
Q psy6631 131 ATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFL 210 (704)
Q Consensus 131 ~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l 210 (704)
+.+++.+. ..++ .|..+. ..+++..++++++++|++||++|.+|+++.++..+++++ ...++++
T Consensus 174 ~~v~~~~~----~~~~---~~~~~~--~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~-------~~~~~~~ 237 (378)
T cd03682 174 DWVSHALG----LEHT---HYHIVF--IPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKK-------RIKNPYL 237 (378)
T ss_pred HHHHHHhC----CCCC---ccccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCcHH
Confidence 99988753 2222 243322 234678899999999999999999999999887655442 2345788
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCCCCcHHHHHH-hhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHH
Q psy6631 211 YPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSS-LFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFS 289 (704)
Q Consensus 211 ~p~l~gllvg~l~fP~~~G~~~~g~l~~~~~i~~-lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t 289 (704)
++++++++++++.+..+...+.+ .+++.++. ++++ +.. ...++.|+++|
T Consensus 238 ~~~iggl~~g~~~~~~~~~~~~G---~g~~~i~~~~~~~-----------------------~~~----~~~~l~K~~~t 287 (378)
T cd03682 238 RPFVGGLLIILLVYLLGSRRYLG---LGTPLIEDSFFGG-----------------------TVY----PYDWLLKLIFT 287 (378)
T ss_pred HHHHHHHHHHHHHHHhcCCcccc---CCHHHHHHHHhcC-----------------------Cch----HHHHHHHHHHH
Confidence 99999999998754322222211 12455544 3221 111 12358999999
Q ss_pred HHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh
Q psy6631 290 IIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT 368 (704)
Q Consensus 290 ~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT 368 (704)
++|+|+|.|||+|+|++++||++|+++|.+++ .++..|+++||+|++++++| |++++++++|||
T Consensus 288 ~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~---------------~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Elt 352 (378)
T cd03682 288 VITLGAGFKGGEVTPLFFIGATLGNALAPILG---------------LPVSLLAALGFVAVFAGATNTPLACIIMGIELF 352 (378)
T ss_pred HHHHhcCCCCceechHHHHHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999998752 35789999999999999998 899999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcCCChHH
Q psy6631 369 GQITHIIPVMIAVLISNAVAALLQPSLYD 397 (704)
Q Consensus 369 G~~~~~lPimia~~is~~va~~l~~siy~ 397 (704)
| ++.++|+|+++++||.+++ ++|+|+
T Consensus 353 g-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 353 G-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred C-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 9 5778899999999999997 678884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=6.7e-32 Score=298.78 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=194.9
Q ss_pred hhhhhhcccccccccCCCcccccccccccccCCCCCcccchhhhhhcccccccccceeeeccccchH---HHHHHHHHHH
Q psy6631 52 LYTVCCSALKSPQCISPSEITGEDSLTKIEKFPEGRAPLVVYEFLKGALYKGVLFSIEVTTVYFAIR---NYWRGFFTAV 128 (704)
Q Consensus 52 h~~~~~a~~~~~~~~~~~~i~g~~~~~~~~~l~~~~gaAAGvaAaF~APIgGvLFalEv~~~~~~~~---~~~~~f~aav 128 (704)
|+|+.+++.+++++. .. . + + ..+. .+|+|||+||+||||++|++|++||+.+++..+ ...+.+++++
T Consensus 125 qiGa~igs~~~r~~~--~~-~--~---~-~~l~-~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~ 194 (414)
T PRK03655 125 TVNIALAVAIGARLL--PR-V--N---R-MDWT-ILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAA 194 (414)
T ss_pred HHHHHHHHHHHHHhc--cC-C--C---h-hHHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999997662 11 1 1 0 1111 268899999999999999999999999887752 3455667777
Q ss_pred HHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcch
Q psy6631 129 CGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNR 208 (704)
Q Consensus 129 ~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~ 208 (704)
+++.+.+.+. + . .|..++......+..++++++++|++||++|.+|++..++..++++ .++. +
T Consensus 195 ~a~~v~~~~~----~-~----~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~-------~~~~-p 257 (414)
T PRK03655 195 AGALTTGLFF----H-P----HFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMH-------RLKN-P 257 (414)
T ss_pred HHHHHHHHhC----C-C----CcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccc-c
Confidence 8888777652 1 1 2321211112246789999999999999999999988776543322 1233 4
Q ss_pred hHHHHHHHHHHHHHHh---hhhhccccCCCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHH
Q psy6631 209 FLYPGIVVLLATSVSF---PLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYT 285 (704)
Q Consensus 209 ~l~p~l~gllvg~l~f---P~~~G~~~~g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K 285 (704)
+++++++|++++.+.+ |+.+|. +|+.+.++..+ ++.....+++++++|
T Consensus 258 ~~~~~lgGl~vg~l~l~~~~~~~g~-------Gy~~i~~~~~~----------------------~~~~~~~ll~l~l~K 308 (414)
T PRK03655 258 VLVLGIGGFILGILGVIGGPLTLFK-------GLDEMQQMAAN----------------------QAFSASDYFLLAVVK 308 (414)
T ss_pred hHHHHHHHHHHHHHHHHhCCccccC-------CHHHHHHHHhc----------------------CCccHHHHHHHHHHH
Confidence 5678889999987643 444444 36666554422 123355677788999
Q ss_pred HHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-----hhHH
Q psy6631 286 YIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-----TISV 360 (704)
Q Consensus 286 ~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-----~is~ 360 (704)
+++|++|+++|+|||+|+|+|++||++|.+++.+ +|. .++...+++||+|++++++| |+|+
T Consensus 309 ~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l----~p~----------~~~~~~v~~~m~a~la~vtr~p~~sp~ta 374 (414)
T PRK03655 309 LAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH----VPA----------VPAAITVSCAILGIVLVVTRDGWLSLFMA 374 (414)
T ss_pred HHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh----ccC----------CChHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 9999999999999999999999999999888776 443 36788899999999999998 8999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHh
Q psy6631 361 SVIMFEMTGQITHIIPVMIAVLISNAVAA 389 (704)
Q Consensus 361 ~viv~ElTG~~~~~lPimia~~is~~va~ 389 (704)
++|+.||| ++|+|++++++-++.-
T Consensus 375 ~viv~em~-----~~~l~~~~~~~~~~~~ 398 (414)
T PRK03655 375 AVVVPDTT-----LLPLLCIVMLPAWLLL 398 (414)
T ss_pred HHHHhcch-----HHHHHHHHHHHHHHHH
Confidence 99999999 8899999988766553
No 19
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.53 E-value=1.8e-13 Score=158.84 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhhhcch----hHHHHHHHHHHHHHHh---hhhhccccCCCC
Q psy6631 165 ELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNK-KMNAFLQKNR----FLYPGIVVLLATSVSF---PLGLGKYMAGDL 236 (704)
Q Consensus 165 el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~-~~~~~l~~~~----~l~p~l~gllvg~l~f---P~~~G~~~~g~l 236 (704)
-+...+++|++.|+++.+|.+...+...++.... .........+ ++-|+++|++++.+.+ +..-++
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~------ 97 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKG------ 97 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccC------
Confidence 4566799999999999999999888776543210 0001111122 3335566666665532 222111
Q ss_pred CcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHH
Q psy6631 237 NTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMI 316 (704)
Q Consensus 237 ~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~ 316 (704)
+..+.+.....+. +..++. ....|++.+.+|.|+|.+.|--.|+.-+||++|..+
T Consensus 98 g~~~~~~~~~~~~---------------------~~~~~~----~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~ 152 (574)
T PRK01862 98 GKTDYMEAVALGD---------------------GVVPVR----QSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLV 152 (574)
T ss_pred CcHHHHHHHHcCC---------------------CCCChH----HHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHH
Confidence 1234444332210 111121 235699999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh-CCc--hhHHHHHHHHHHHHHHHhhc
Q psy6631 317 GEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT-GQI--THIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 317 G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT-G~~--~~~lPimia~~is~~va~~l 391 (704)
+..+.. + ...--....+||||=++++.+ |++.++..+|.. +++ ..+.|.++++++|+.+++.+
T Consensus 153 ~~~~~~--~----------~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~ 219 (574)
T PRK01862 153 GRFAHF--D----------PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF 219 (574)
T ss_pred HHHhCC--C----------HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 997632 1 112345677899999999988 899999999985 554 56889999999999999875
No 20
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.49 E-value=7.9e-15 Score=153.19 Aligned_cols=156 Identities=18% Similarity=0.292 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCCCCCCCCCCccccccccccccc--cceEEecCCCCHHHHHHHHHhc
Q psy6631 373 HIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMV--RDVKYIWNNMTYRDLKNLLKEN 450 (704)
Q Consensus 373 ~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~ea~~~l~~~ 450 (704)
.-+|++-++--.+.+|..+++.+|+.+++.. -+.|+|+|+ .+..|+.++++++|+.++-+++
T Consensus 156 ~~lPvlstsYDTFTVAtmIN~Al~n~lIKkd----------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt 219 (432)
T COG4109 156 KGLPVLSTSYDTFTVATMINKALSNQLIKKD----------------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKT 219 (432)
T ss_pred cCCceEEecccceeHHHHHHHHHHHhhhhhh----------------eeeHHHhccccccceeccccccHHHHHHHHHHc
Confidence 4569998888888888888889999988764 367999999 7899999999999999999998
Q ss_pred CCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCc
Q psy6631 451 RSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLR 530 (704)
Q Consensus 451 ~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~ 530 (704)
+++.|||||.. ++++|+++.+|+.... ++.+++.+|++++.++.+.++++.+++.| -++.+.
T Consensus 220 -~~sRfPVvn~~------------~kvvGvVt~rDv~~~~----~~t~ieKVMtknp~tv~~~tsVAsvaq~M-iwE~ie 281 (432)
T COG4109 220 -GHSRFPVVNRS------------MKVVGVVTMRDVLDKK----PSTTIEKVMTKNPITVRAKTSVASVAQMM-IWEGIE 281 (432)
T ss_pred -CCCccceeccc------------ceEEEEEEehhhhcCC----CCccHHHHhccCCeeecccchHHHHHHHH-Hhccce
Confidence 89999999987 8999999999997554 45688999999999999999999999999 589999
Q ss_pred eeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 531 VFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 531 Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
++||++++.. +.|.++|++|+++.+..|+||+
T Consensus 282 m~PVv~~n~~-----------llGiitR~dvlk~lq~~q~qpq 313 (432)
T COG4109 282 MLPVVDSNNT-----------LLGIITRQDVLKSLQMIQRQPQ 313 (432)
T ss_pred eeeEEcCCce-----------EEEEEEHHHHHHHHHHhccCCc
Confidence 9999998655 6688888889998888888763
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.44 E-value=1.8e-12 Score=132.93 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHHHHH-hhhhhHHHH-HHHHHhC------Cch-hHHHHHHHHHHHHHHHhhcCCChHHHHHHHhcCCC--
Q psy6631 339 PGGYATVGAAAFSGA-VTHTISVSV-IMFEMTG------QIT-HIIPVMIAVLISNAVAALLQPSLYDSIILIKKLPY-- 407 (704)
Q Consensus 339 p~~yAlvGmaAf~aa-v~~~is~~v-iv~ElTG------~~~-~~lPimia~~is~~va~~l~~siy~~~l~~r~~p~-- 407 (704)
.+.-...+++++++- ..||.|..+ +..-|+| +|. .+.|+.+.+++-...+-.+ +. +.+|.||-
T Consensus 109 ~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~ly-----nn-l~~r~YPh~~ 182 (382)
T COG3448 109 SGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLY-----NN-LTRRTYPHHW 182 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHH-----HH-HhcCCCCCcc
Confidence 344455667776654 567888776 4444553 344 5789988888765555433 33 33444432
Q ss_pred ---------CCCCCCCC----------------------------------------ccccccccccccccceEEecCCC
Q psy6631 408 ---------LPDLLPSS----------------------------------------SGIYNVYVEDFMVRDVKYIWNNM 438 (704)
Q Consensus 408 ---------l~~~~~~~----------------------------------------~~l~~~~V~diM~~~v~~v~~~~ 438 (704)
..|.+|+. ..+..++..|||++|++++.+++
T Consensus 183 ~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrdVvtv~~~t 262 (382)
T COG3448 183 LSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRDVVTVSTDT 262 (382)
T ss_pred CCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCccceecCCcC
Confidence 01111110 12245689999999999999999
Q ss_pred CHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-------ccccccccccccccCceEEe
Q psy6631 439 TYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-------SGIYNVYVEDFMVRDVKYIW 511 (704)
Q Consensus 439 tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-------~~~~~~~V~dvM~~~v~tV~ 511 (704)
++.++.+.+.++ +.+.+||+|++ .+++|+|.+.|+..... ......+|+++|++++.++.
T Consensus 263 s~dhA~~ll~~H-~ikaLPV~d~~------------~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~ 329 (382)
T COG3448 263 SIDHARKLLQEH-RIKALPVLDEH------------RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVR 329 (382)
T ss_pred ChHHHHHHHHHc-Ccccccccccc------------cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeec
Confidence 999999999999 89999999988 79999999999986322 12345789999999999999
Q ss_pred CCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 512 NNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 512 ~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
||++..|+.-.+ ..++...+||+|+ +..+|+++..|+.
T Consensus 330 pdtpa~~lvp~l-ad~g~H~lpvld~~g~lvGIvsQtDli 368 (382)
T COG3448 330 PDTPAVELVPRL-ADEGLHALPVLDAAGKLVGIVSQTDLI 368 (382)
T ss_pred CCCcHHHHHHHh-hcCCcceeeEEcCCCcEEEEeeHHHHH
Confidence 999999999998 5688889999987 4557777666653
No 22
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.26 E-value=5e-12 Score=127.76 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=103.6
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+.+.+|+++|++++.++.+++|++|+.+.|.++ +.++.||+|++ +++|+++..|+..+...+..+.
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~-~i~GaPVvd~d-------------k~vGiit~~dI~~aia~g~~~~ 234 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEK-GIRGAPVVDDD-------------KIVGIITLSDIAKAIANGNLDA 234 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHc-CccCCceecCC-------------ceEEEEEHHHHHHHHHcCCccc
Confidence 346789999999999999999999999999999 89999999876 8999999999998888888999
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~ 550 (704)
+|+|+|+++++++.+|+.+.||.++|. ..++..+-|+| +++.+|+++|-|..
T Consensus 235 kV~~~M~k~vitI~eDe~i~dAir~M~-~~nVGRLlV~ds~gkpvGiITrTDIL 287 (294)
T COG2524 235 KVSDYMRKNVITINEDEDIYDAIRLMN-KNNVGRLLVTDSNGKPVGIITRTDIL 287 (294)
T ss_pred cHHHHhccCCceEcCchhHHHHHHHHH-hcCcceEEEEccCCcEEEEEehHHHH
Confidence 999999999999999999999999995 45555566666 56667777776654
No 23
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.24 E-value=1.7e-10 Score=127.66 Aligned_cols=177 Identities=19% Similarity=0.133 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HhhhcchhHHHHHHHHHHHHHHh--hhhhccccCCCCCcHHHHHHhh
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNKKMN----AFLQKNRFLYPGIVVLLATSVSF--PLGLGKYMAGDLNTHDQLSSLF 246 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~~~~----~~l~~~~~l~p~l~gllvg~l~f--P~~~G~~~~g~l~~~~~i~~lf 246 (704)
|+++|+++.+|.++..+..+++.+..... ..-...+++.+++++++++.+.. |...|. +.+++.+..
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~-------G~~~v~~~~ 73 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGH-------GIPEVIEAI 73 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCC-------ChHHHHHHH
Confidence 68999999999999988776544221000 00011234667777787776643 222232 244443333
Q ss_pred hcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCC
Q psy6631 247 SNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPD 326 (704)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~ 326 (704)
++. . .... .-..+.|++.+.++.++|.++|.+.|++.+||++|..++...+. +
T Consensus 74 ~~~-----------------~---~~~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--~- 126 (383)
T cd00400 74 ALG-----------------G---GRLP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--S- 126 (383)
T ss_pred HhC-----------------C---CCCC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--C-
Confidence 210 0 0011 13567899999999999999999999999999999999987642 1
Q ss_pred CccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHhhcC
Q psy6631 327 GITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQIT---HIIPVMIAVLISNAVAALLQ 392 (704)
Q Consensus 327 ~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~~---~~lPimia~~is~~va~~l~ 392 (704)
..+...+..+||+|.++++.+ |++.+++.+|+++... .++|.++++.+|+.+++.+.
T Consensus 127 ---------~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 187 (383)
T cd00400 127 ---------RNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF 187 (383)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence 135668999999999999998 8999999999998766 78999999999999999764
No 24
>PRK05277 chloride channel protein; Provisional
Probab=99.23 E-value=3.3e-10 Score=127.57 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh--cchhHHHHHHHHHHHHHH-------hhhhhccccCCCCC
Q psy6631 167 TVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQ--KNRFLYPGIVVLLATSVS-------FPLGLGKYMAGDLN 237 (704)
Q Consensus 167 ~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~--~~~~l~p~l~gllvg~l~-------fP~~~G~~~~g~l~ 237 (704)
.+.+++|+++|+++.+|.+...+...++... ...... ...|..+++++.+.+.+. -|...|.
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~Gs------- 72 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGL--LASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGS------- 72 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC-------
Confidence 5678999999999999999999887654322 111111 122333444444443321 1443343
Q ss_pred cHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHH
Q psy6631 238 THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG 317 (704)
Q Consensus 238 ~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G 317 (704)
+.+++...+++.. .... .-....|++.+.++.|+|.++|...|+..+||++|..++
T Consensus 73 Gi~~i~~~l~~~~---------------------~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~ 128 (438)
T PRK05277 73 GIPEIEGALEGLR---------------------PVRW---WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVL 128 (438)
T ss_pred CHHHHHHHHcCCC---------------------ccch---HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH
Confidence 2455655554310 0000 113478999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH-HhCC--ch--hHHHHHHHHHHHHHHHhhc
Q psy6631 318 EIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE-MTGQ--IT--HIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E-lTG~--~~--~~lPimia~~is~~va~~l 391 (704)
..++... +.+...+..+||||-++++.+ |++.+++.+| +++. ++ .+.|+++++++|+.+.+.+
T Consensus 129 ~~~~~~~-----------~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 197 (438)
T PRK05277 129 DIFRLRS-----------DEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF 197 (438)
T ss_pred HHcccCC-----------HHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 8764211 124567899999999999998 8999999999 6763 23 4789999999999999876
Q ss_pred C
Q psy6631 392 Q 392 (704)
Q Consensus 392 ~ 392 (704)
.
T Consensus 198 ~ 198 (438)
T PRK05277 198 N 198 (438)
T ss_pred c
Confidence 3
No 25
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.23 E-value=1.6e-10 Score=128.71 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHH----HHHHHHHHHHH---HhhhhhccccCCCCCcHHHHHH
Q psy6631 172 IGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLY----PGIVVLLATSV---SFPLGLGKYMAGDLNTHDQLSS 244 (704)
Q Consensus 172 lGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~----p~l~gllvg~l---~fP~~~G~~~~g~l~~~~~i~~ 244 (704)
+|+++|+++.+|.+...+...++........ ...+++.. +.+++++++.+ +.|...|.+ .+++.+
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G-------~~~v~~ 72 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA-NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSG-------IPQVEG 72 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC-------HHHHHH
Confidence 4889999999999999988766543211000 01112222 23344555443 245555542 566655
Q ss_pred hhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhc
Q psy6631 245 LFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRF 324 (704)
Q Consensus 245 lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~ 324 (704)
.+++.. ... ..-.++.|++.+++++++|.++|.+.|++.+||++|..++..+...
T Consensus 73 ~l~~~~--------------------~~~----~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~- 127 (402)
T cd01031 73 VLAGLL--------------------PPN----WWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTS- 127 (402)
T ss_pred HHcCCC--------------------Ccc----cHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCC-
Confidence 554310 000 1124679999999999999999999999999999999999875321
Q ss_pred CCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHH-HhCCch--hHHHHHHHHHHHHHHHhhc
Q psy6631 325 PDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFE-MTGQIT--HIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 325 p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~E-lTG~~~--~~lPimia~~is~~va~~l 391 (704)
..+...+..+||+|.++++.+ |++.+++.+| +++++. .+.|+++++++|+.+++.+
T Consensus 128 -----------~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 128 -----------PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred -----------HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 134677999999999999998 8999999999 778755 7899999999999999865
No 26
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.20 E-value=3.2e-11 Score=130.45 Aligned_cols=141 Identities=9% Similarity=0.078 Sum_probs=110.6
Q ss_pred CChHHHHHHHhcCCC---CCCCCCCCccc---ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccc
Q psy6631 393 PSLYDSIILIKKLPY---LPDLLPSSSGI---YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVA 464 (704)
Q Consensus 393 ~siy~~~l~~r~~p~---l~~~~~~~~~l---~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~ 464 (704)
.++|...+.+++.-. .. ......+ ..++|+|+|++ ++.+++++++++++.+.|.++ +...+||+|++
T Consensus 170 dsL~~~~l~~~g~~~~~~~~--~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~-~~~~~vVvd~~-- 244 (326)
T PRK10892 170 DALAVALLKARGFTAEDFAL--SHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRK-NLGMTVICDDN-- 244 (326)
T ss_pred HHHHHHHHHHhCCCHHHHHh--cCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhc-CCCeEEEEcCC--
Confidence 467777777776543 22 1223345 68899999997 899999999999999999877 66777778876
Q ss_pred cccCCCCcCCeeEEEeecCCCCCCCCcc--cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceE
Q psy6631 465 ALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFE 542 (704)
Q Consensus 465 ~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~ 542 (704)
++++|+|+..|+...... .+...+|+|+|++++.++.+++++.|+++.|. .++...+||+++++.+|
T Consensus 245 ----------g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVv~~~~lvG 313 (326)
T PRK10892 245 ----------MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPGGIRVRPGILAVDALNLMQ-SRHITSVLVADGDHLLG 313 (326)
T ss_pred ----------CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHH-HCCCcEEEEeeCCEEEE
Confidence 799999999998643322 34457899999999999999999999999995 57777889998777778
Q ss_pred EeehHHH
Q psy6631 543 QMEIKRR 549 (704)
Q Consensus 543 ~i~~~~~ 549 (704)
.+++.++
T Consensus 314 iit~~di 320 (326)
T PRK10892 314 VLHMHDL 320 (326)
T ss_pred EEEhHHh
Confidence 7777664
No 27
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.13 E-value=1e-10 Score=126.22 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=112.1
Q ss_pred CChHHHHHHHhcCCC---CCCCCCCCcccc---ccccccccccc--eEEecCCCCHHHHHHHHHhcCCccEEEeecCccc
Q psy6631 393 PSLYDSIILIKKLPY---LPDLLPSSSGIY---NVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVA 464 (704)
Q Consensus 393 ~siy~~~l~~r~~p~---l~~~~~~~~~l~---~~~V~diM~~~--v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~ 464 (704)
.++|...+.+++... .. .+....+. .++|+|+|+++ +.+++++++++++.+.+.++ +...+||||++
T Consensus 165 dsL~~~~l~~~g~~~~~~~~--~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~-~~~~~~Vvd~~-- 239 (321)
T PRK11543 165 DALAMAVMQARGFNEEDFAR--SHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRT-GLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHcCCCHHHhcc--CCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHc-CCCEEEEEcCC--
Confidence 367777777776543 22 23345577 78999999998 99999999999999999877 67899999977
Q ss_pred cccCCCCcCCeeEEEeecCCCCCCCC-cccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceE
Q psy6631 465 ALLQPSLYDSIILIKKLPYLPDLLPS-SSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFE 542 (704)
Q Consensus 465 ~~~~p~~~~~~~LvG~Is~~dll~~~-~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~ 542 (704)
++++|+|+..|+.... .......+|+|+|+++++++.+++++.|+++.|. ..+...+||+|+ ++.+|
T Consensus 240 ----------g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~lvG 308 (321)
T PRK11543 240 ----------QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILM-KRKITAAPVVDENGKLTG 308 (321)
T ss_pred ----------CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCeEEE
Confidence 8999999988876432 2223456799999999999999999999999995 577888999985 55577
Q ss_pred EeehHHHh
Q psy6631 543 QMEIKRRE 550 (704)
Q Consensus 543 ~i~~~~~~ 550 (704)
.+++.++.
T Consensus 309 vIt~~di~ 316 (321)
T PRK11543 309 AINLQDFY 316 (321)
T ss_pred EEEHHHHH
Confidence 77776643
No 28
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=2.7e-09 Score=96.21 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=87.4
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++++++++.++.+.+.++ +.+.+||+|++ ++++|+|+..|+.......+...++.++|.+++++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~ 68 (111)
T cd04603 2 QTVSVNCENPLREAIKMINEL-GARAVVVVDEE------------NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPI 68 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CCEEEEEEHHHHHhhccccccccChhheeecCCcE
Confidence 467789999999999999877 78899999877 78999999999876443344456799999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.|+++.|. ..+.+.+||+++ ++.+|.++..+.
T Consensus 69 v~~~~~l~~al~~m~-~~~~~~lpVvd~~~~~~Giit~~di 108 (111)
T cd04603 69 VYCDSKVTDLLRIFR-ETEPPVVAVVDKEGKLVGTIYEREL 108 (111)
T ss_pred ECCCCcHHHHHHHHH-HcCCCeEEEEcCCCeEEEEEEhHHh
Confidence 999999999999995 567778899976 556777766654
No 29
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.93 E-value=3.7e-08 Score=109.00 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchh--HHHHHHHHHHHHH--HhhhhhccccCCCCCcHHHHHH
Q psy6631 169 FALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRF--LYPGIVVLLATSV--SFPLGLGKYMAGDLNTHDQLSS 244 (704)
Q Consensus 169 ~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~--l~p~l~gllvg~l--~fP~~~G~~~~g~l~~~~~i~~ 244 (704)
.+++|+++|+++++|.++..+...+++. ++| +...+++++++.+ .+|...+.+ .+++.+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------~~~~~~~~p~~g~~i~~l~~~~~~~~~~g-------~~~v~~ 64 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------HPWLLPFLPLAGLLIGYLYQKFGKNSEKG-------NNLIIE 64 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHhCcccCCC-------hHHHHH
Confidence 4789999999999999999887654321 122 1122345555533 234332221 333333
Q ss_pred hhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhc
Q psy6631 245 LFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRF 324 (704)
Q Consensus 245 lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~ 324 (704)
..++. + ..... -....|++.+.+++++|.+.|...|+..+||.+|..++..+.
T Consensus 65 ~~~~~---~-----------------~~~~~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~--- 117 (378)
T cd03682 65 EIHGP---E-----------------EGIPL----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFK--- 117 (378)
T ss_pred HHHcc---C-----------------CCCch----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhC---
Confidence 33210 0 00111 124569999999999999999999999999999999998642
Q ss_pred CCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh--C--CchhHHHHHHHHHHHHHHHhhcC
Q psy6631 325 PDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT--G--QITHIIPVMIAVLISNAVAALLQ 392 (704)
Q Consensus 325 p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT--G--~~~~~lPimia~~is~~va~~l~ 392 (704)
.. ..+.-.+...||+|-++++.+ |++.+++.+|++ + ++..++|.++++++++.+++.+.
T Consensus 118 -~~--------~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~ 181 (378)
T cd03682 118 -LP--------EEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG 181 (378)
T ss_pred -CC--------HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 123456899999999999988 899999999997 3 35678899999999999988663
No 30
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.92 E-value=2.5e-09 Score=101.22 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=100.2
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC---cccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS---SSGIYN 496 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~---~~~~~~ 496 (704)
.++++++|+++++.+.+++++.+++++|+++ +.+-+||++++ +++|.|++.++.+.. -+..+.
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~-g~SQlPVi~~~-------------k~VGsItE~~iv~~~le~~e~i~~ 129 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDK-GISQLPVIEED-------------KVVGSITENDIVRALLEGMESIRS 129 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHc-CCccCceeeCC-------------eeeeeecHHHHHHHHhccccchhh
Confidence 5889999999999999999999999999998 89999999875 899999999987442 255677
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhc
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQ 553 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~ 553 (704)
.+|+++|...+++|++|.++..+-+++. . -|-+-|++++..+|+++..|..++.
T Consensus 130 ~~vr~vM~e~fP~Vs~~~~l~vI~~LL~--~-~~AVlV~e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 130 LRVREVMGEPFPTVSPDESLNVISQLLE--E-HPAVLVVENGKVVGIITKADIMKLL 183 (187)
T ss_pred hhHHHHhcCCCCcCCCCCCHHHHHHHHh--h-CCeEEEEeCCceEEEEeHHHHHHHH
Confidence 8999999999999999999999999983 2 3345555888889999988876654
No 31
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.91 E-value=3.9e-09 Score=119.36 Aligned_cols=122 Identities=13% Similarity=0.034 Sum_probs=104.3
Q ss_pred ccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 416 SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 416 ~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+..++++++|.+++.++.++++++|+.+.+.++ +.+.+||+|++ ++++|+|+.+|+.... .
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~-~~s~l~VVD~~------------gklvGIVT~rDL~~~~----~ 146 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKR-AHGAVVVVDEE------------GRPVGVVTEADCAGVD----R 146 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhc-CCceEEEECCC------------CeEEEEEeHHHHhcCc----c
Confidence 45667889999999999999999999999999987 78999999977 7999999999985432 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR 555 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~ 555 (704)
..+|.|+|+++++++++++++.|+++.|. .++.+.+||+|+ ++.+|.+++.++....+.
T Consensus 147 ~~~V~diMt~~~itV~~d~sL~eAl~lM~-~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 147 FTQVRDVMSTDLVTLPAGTDPREAFDLLE-AARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCCHHHhccCCceEECCCCcHHHHHHHHH-hcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 35699999999999999999999999995 577888999984 677899999988664433
No 32
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.80 E-value=1.5e-08 Score=91.77 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=86.6
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---ccccccccccccccCc
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SGIYNVYVEDFMVRDV 507 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~~~~~~V~dvM~~~v 507 (704)
+.++.++++++++.+.+.++ +...+||+|++ ++++|+++..|+..... ......++.++|.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~-~~~~~~Vvd~~------------g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~ 69 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEP-GIDLVVVCDPH------------GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAV 69 (114)
T ss_pred eEEECCCCcHHHHHHHHHhc-CCCEEEEECCC------------CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCC
Confidence 56789999999999999887 78999999877 78999999999874332 2345578999999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+++++++++.++++.|. ..+...+||+++ ++.+|.+++.+.
T Consensus 70 ~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~~Gvi~~~dl 111 (114)
T cd04619 70 VSCRPGDLLHDVWQVMK-QRGLKNIPVVDENARPLGVLNARDA 111 (114)
T ss_pred eeECCCCCHHHHHHHHH-HcCCCeEEEECCCCcEEEEEEhHhh
Confidence 99999999999999995 466777888875 466777766653
No 33
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.77 E-value=9.6e-08 Score=108.39 Aligned_cols=197 Identities=13% Similarity=0.027 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHhhhcch----hHHHHHHHHHHHHHHh---hhhhccccC
Q psy6631 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNK--KMNAFLQKNR----FLYPGIVVLLATSVSF---PLGLGKYMA 233 (704)
Q Consensus 163 ~~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~--~~~~~l~~~~----~l~p~l~gllvg~l~f---P~~~G~~~~ 233 (704)
...+...+++|+++|++|.+|.+...+...++.... .........+ ...+++++++.+.+.. |...|.+
T Consensus 30 ~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsG-- 107 (466)
T cd03685 30 FLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSG-- 107 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC--
Confidence 345667799999999999999999988775533211 0000000011 1344455566665532 6655553
Q ss_pred CCCCcHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHH
Q psy6631 234 GDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFG 313 (704)
Q Consensus 234 g~l~~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G 313 (704)
..++....++... +....+ --++.|++.+.++.|+|.+.|-..|+.-+||++|
T Consensus 108 -----ip~v~~~l~g~~~------------------~~~l~~----r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 108 -----IPEVKGYLNGVKI------------------PHILRL----KTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred -----HHHHHHHHcCcCc------------------cccchH----HHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 4555555442100 000011 1256899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC---CccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhC---CchhHHHHHHHHHHHHH
Q psy6631 314 RMIGEIIFLRFPD---GITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTG---QITHIIPVMIAVLISNA 386 (704)
Q Consensus 314 ~~~G~~~~~~~p~---~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG---~~~~~lPimia~~is~~ 386 (704)
..++......+.. ...+ ..+..+--.+..+||||-++++.+ |++.++..+|.++ ..+...+.++++++|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~ 238 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRY--FRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTF 238 (466)
T ss_pred HHHhhccccccccchhhhhh--ccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHH
Confidence 9999743100000 0000 000123346899999999999988 8999999999876 23455566666666666
Q ss_pred HHhh
Q psy6631 387 VAAL 390 (704)
Q Consensus 387 va~~ 390 (704)
+++.
T Consensus 239 va~~ 242 (466)
T cd03685 239 TLNF 242 (466)
T ss_pred HHHH
Confidence 6654
No 34
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.74 E-value=2.5e-08 Score=113.59 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=96.5
Q ss_pred ccccccc---cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccc
Q psy6631 422 YVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVY 498 (704)
Q Consensus 422 ~V~diM~---~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~ 498 (704)
+|+++|. .+..++++++|++|+++.+.++ ++..+||+|++ .++++++|+|+..|+.... ...+.+
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~-~~~~vpVVD~~---------~~~gkLvGIVT~~DLr~~~--~~~~~~ 162 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKT-GHSTVAVTEDG---------TAHGKLLGIVTSRDYRISR--MSLDTK 162 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhc-CCCeEEEEeCC---------CcCCEEEEEEEcHHhhccc--cCCCCC
Confidence 4777775 3456899999999999999988 88999999862 0127999999999986432 245678
Q ss_pred ccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc
Q psy6631 499 VEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ 553 (704)
Q Consensus 499 V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~ 553 (704)
|+++|++ ++.++++++++.|+++.|. .+++..+||+|+ ++.+|.+++.+.....
T Consensus 163 V~dIMt~~~~~itv~~d~~l~eAl~lM~-e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 163 VKDFMTPFEKLVTANEGTTLKEANDIIW-DHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHhCCCCCeEEECCCCcHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 9999996 7889999999999999995 578889999985 6678888888876533
No 35
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.73 E-value=1.5e-08 Score=106.27 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=91.8
Q ss_pred ccccccccccc-eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-cccccc
Q psy6631 420 NVYVEDFMVRD-VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-SGIYNV 497 (704)
Q Consensus 420 ~~~V~diM~~~-v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-~~~~~~ 497 (704)
.++|+|+|.++ +.+++++++++++.+.+.+. +...+||+|++ ++++|+++..|+..... ......
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~-~~~~~~Vvd~~------------g~~~Givt~~dl~~~~~~~~~~~~ 220 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEK-RLGSAIVCDEN------------NQLVGVFTDGDLRRALLGGGSLKS 220 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhc-CCcEEEEEeCC------------CCEEEEEEcHHHHHHHhcCCcccC
Confidence 47899999998 99999999999999999877 78899999977 78999999999865322 223456
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceE
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFE 542 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~ 542 (704)
+|+|+|.++++++.+++++.|+++.|. ..+.+.+||+|++ +.+|
T Consensus 221 ~v~~im~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~l~G 265 (268)
T TIGR00393 221 EVRDFMTLGPKTFKLDALLLEALEFLE-RRKITSLVVVDDHNKVLG 265 (268)
T ss_pred cHHHhCCCCCeEECCCCcHHHHHHHHH-HcCCcEEEEECCCCeEEE
Confidence 799999999999999999999999995 5777788999764 4444
No 36
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.73 E-value=3.6e-08 Score=89.96 Aligned_cols=107 Identities=11% Similarity=0.168 Sum_probs=82.7
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc---------ccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN---------VYV 499 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~---------~~V 499 (704)
+++.+++++++++++.+.+.++ +.+.+||+|++ ++++|+++.+|++.....++.. ...
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~-~~~~~pVv~~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 67 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVER-RVSALPIVDEN------------GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALER 67 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHc-CCCeeeEECCC------------CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhh
Confidence 3578899999999999999888 78999999877 7899999999987432221111 123
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++|.+++.++.+++++.++++.|. ..+...+||+++ ++.+|.+++.+.
T Consensus 68 ~~~~~~~~~~v~~~~~l~~~~~~m~-~~~~~~l~Vvd~~~~~~Givt~~di 117 (120)
T cd04641 68 RSQDFEGVRTCSPDDCLRTIFDLIV-KARVHRLVVVDENKRVEGIISLSDI 117 (120)
T ss_pred cccCCCCCeEEcCCCcHHHHHHHHH-hcCccEEEEECCCCCEEEEEEHHHh
Confidence 3456677899999999999999995 567778899986 456777766653
No 37
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.72 E-value=2.7e-08 Score=112.51 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCe
Q psy6631 396 YDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSI 475 (704)
Q Consensus 396 y~~~l~~r~~p~l~~~~~~~~~l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~ 475 (704)
++..+..+++-..+ .......+..++|+|+|.+++.++.++++++++++.|.++ +.+.+||+|++ +
T Consensus 311 ~~~w~~~~~~~~~~-~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~-~~~~~~Vvd~~------------~ 376 (454)
T TIGR01137 311 NDEWMKDNGFLDDE-VLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREY-GFDQLPVVTEA------------G 376 (454)
T ss_pred ChHHHHhcCCcccc-cccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------C
Confidence 34445555542222 1223345788999999999999999999999999999887 78899999876 7
Q ss_pred eEEEeecCCCCCCCCc--ccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 476 ILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 476 ~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
+++|+|+..|++.... ....+.+|.++|+++++++++++++.++.+.|.+ .+. .+|+++++.+|.+++.++..
T Consensus 377 ~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~~~~-~~~--~vV~~~g~liGvvt~~dll~ 451 (454)
T TIGR01137 377 KVLGSVTLRELLSALFAGKANPDDAVSKVMSKKFIQIGEGEKLSDLSKFLEK-NSS--AIVTEEGKPIGVVTKIDLLS 451 (454)
T ss_pred eEEEEEEHHHHHHHHhccCCCcCCCHHHhcCCCCeEECCcCcHHHHHHHHHH-CCe--eEEEECCEEEEEEEHHHHHH
Confidence 8999999999865321 1233457999999999999999999999999954 333 33555566678777777544
No 38
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.72 E-value=4.3e-08 Score=89.46 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=86.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc------------ccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG------------IYN 496 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~------------~~~ 496 (704)
+++.++.+++++.++.+.+.+. +++.+||+|++ ++++|+++..|++...... ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRH-RIKALPVVDGD------------RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHc-CCceeeEECCC------------CCEEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence 5778899999999999999887 78899999876 7899999999986432211 234
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.++|+++++++.+++++.++++.|. ..+...+||+++ +..+|.++..+.
T Consensus 69 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~Vv~~~g~~~Gvit~~di 121 (124)
T cd04600 69 ETVGDIMSPPVVTVRPDTPIAELVPLLA-DGGHHHVPVVDEDRRLVGIVTQTDL 121 (124)
T ss_pred ccHHHhccCCCeeeCCCCcHHHHHHHHH-hcCCCceeEEcCCCCEEEEEEhHHh
Confidence 5789999999999999999999999995 466778888874 555666666553
No 39
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.72 E-value=2.3e-08 Score=89.47 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=85.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++.+.+.+. +...+||+|++ ++++|+++..|+...........++.++|.+++++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~-~~~~~~V~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~ 68 (111)
T cd04639 2 HFETLSPADTLDDAADALLAT-TQHEFPVVDGD------------GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPT 68 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHc-CCCcceEECCC------------CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcE
Confidence 567789999999999999876 78899999876 78999999999865433333446799999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+.+.+||+++ +..+|.++..++
T Consensus 69 i~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~G~it~~dl 108 (111)
T cd04639 69 VSPSATLDAVLRLMQ-QGGAPAVPVVDGSGRLVGLVTLENV 108 (111)
T ss_pred ECCCCcHHHHHHHHH-hcCCceeeEEcCCCCEEEEEEHHHh
Confidence 999999999999995 455667888876 566777776654
No 40
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.71 E-value=2.7e-08 Score=90.55 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=83.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--cccccccccccccc--
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVR-- 505 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~-- 505 (704)
++.+++++++++++.+.|.++ +...+||+|++ ++++|+++..|++.... ......+++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~-~~~~~~V~d~~------------~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLE-DVGSLFVVDED------------GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMP 68 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHc-CCCEEEEEcCC------------CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCC
Confidence 467899999999999999877 77899999976 78999999999865432 22335678899985
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHH
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKR 548 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~ 548 (704)
+++++.+++++.+++++|. ..+.+.+||++++ +.+|.+++.+
T Consensus 69 ~~~~v~~~~~l~~~~~~~~-~~~~~~lpVvd~~~~~~~l~Gvit~~~ 114 (118)
T cd04617 69 NITTTTPEESVLEAAKKLI-EHQVDSLPVVEKVDEGLEVIGRITKTN 114 (118)
T ss_pred CcEEECCCCcHHHHHHHHH-HcCCCEeeEEeCCCccceEEEEEEhhh
Confidence 7899999999999999995 4677788998764 4466555544
No 41
>KOG0476|consensus
Probab=98.71 E-value=1.5e-06 Score=99.33 Aligned_cols=92 Identities=52% Similarity=0.729 Sum_probs=77.2
Q ss_pred CccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---
Q psy6631 461 SSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--- 537 (704)
Q Consensus 461 ~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--- 537 (704)
+.++|.||||+||+-+.+.-+++...+.......+.+.|+|+|.+|+.++++|+++.|+.+.+.... ++-+|.||+
T Consensus 552 NAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~-lR~~PlV~s~es 630 (931)
T KOG0476|consen 552 NAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTT-LRSFPLVESKES 630 (931)
T ss_pred HHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCc-cceeccccCccc
Confidence 3389999999999998898888888888888888999999999999999999999999999996543 777787775
Q ss_pred CCceEEeehHHHhhhc
Q psy6631 538 SGKFEQMEIKRREERQ 553 (704)
Q Consensus 538 ~~~~~~i~~~~~~~~~ 553 (704)
.-.+|+++|+.+.++.
T Consensus 631 miLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 631 MILLGSVARRYLTALL 646 (931)
T ss_pred ceeeehhHHHHHHHHH
Confidence 4458888888775443
No 42
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.70 E-value=6.8e-08 Score=85.80 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=74.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
.+.+++++++++++.+.|.++ +.+++||+|++ +++++|+++..|+..... +.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vvd~~-----------~~~~~Givt~~Dl~~~~~---------------~~~ 54 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVEN-GIRSAPLWDSR-----------KQQFVGMLTITDFILILR---------------LVS 54 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHc-CCceEEEEeCC-----------CCEEEEEEEHHHHhhhee---------------eEE
Confidence 467899999999999999888 78999999853 168999999999864221 789
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~~ 549 (704)
++|++++.|+++.|. .++...+||++++ +.+|.+++++.
T Consensus 55 v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~~~giit~~d~ 95 (98)
T cd04618 55 IHPERSLFDAALLLL-KNKIHRLPVIDPSTGTGLYILTSRRI 95 (98)
T ss_pred eCCCCcHHHHHHHHH-HCCCCEeeEEECCCCCceEEeehhhh
Confidence 999999999999995 4677788888753 56676666553
No 43
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.70 E-value=2.5e-08 Score=89.92 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=83.4
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccccccc--C
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVR--D 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~--~ 506 (704)
+++.+++++++++++.+.+.++.+...+||+|++ ++++|+++..|++..........++.++|+. +
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~ 68 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE------------GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAK 68 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCC------------CcEEEEEEHHHHHHHHHhhccccchhhhhccccc
Confidence 3567889999999999988765226889999877 7899999999987554333345678999984 3
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++++.+++++.++++.|. ..+...+||+++ ++.+|.++..+
T Consensus 69 ~~~v~~~~~l~~a~~~~~-~~~~~~l~Vv~~~~~~~Gvl~~~d 110 (114)
T cd04801 69 LVTVLSEESLAEVLKLLE-EQGLDELAVVEDSGQVIGLITEAD 110 (114)
T ss_pred ceEECCCCcHHHHHHHHH-HCCCCeeEEEcCCCcEEEEEeccc
Confidence 679999999999999995 466778888876 55567665554
No 44
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.70 E-value=5.8e-08 Score=87.62 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=85.0
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Ccc-cccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSS-GIYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~-~~~~~~V~dvM~~~ 506 (704)
++.++.++++++++++.+.++ +.+.+||+|++ .++++|+++..|++.. ... .....++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~-----------~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~ 69 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEH-GVSSLVVEKRR-----------ESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKP 69 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCCEEEEEECC-----------CCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCC
Confidence 567899999999999999877 78899999752 1589999999998642 111 22346799999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
++++++++++.|+++.|. ..+.+.+||+++++.+|.++..++
T Consensus 70 ~~~v~~~~~l~~~~~~~~-~~~~~~~~Vvd~~~~~Gvi~~~dl 111 (114)
T cd04630 70 LISVSPDMDIKYCARLME-RTNIRRAPVVENNELIGIISLTDI 111 (114)
T ss_pred CeeECCCCCHHHHHHHHH-HcCCCEeeEeeCCEEEEEEEHHHh
Confidence 999999999999999995 467778888877666777766653
No 45
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.70 E-value=5.5e-08 Score=87.10 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=85.0
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-cccccccccccccCce
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-GIYNVYVEDFMVRDVK 508 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-~~~~~~V~dvM~~~v~ 508 (704)
++..++++++++++.+.+.++ +++.+||+|++ ++++|+++..|+...... .....++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~ 68 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKY-NTNEIIVKDNE------------EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVF 68 (111)
T ss_pred CceEECCCccHHHHHHHHHHh-CCCeEEEEcCC------------CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcE
Confidence 467789999999999999887 78899999876 789999999998754221 2234578899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
++.+++++.++++.|. ....+.+||++++..+|.++..+
T Consensus 69 ~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~G~it~~d 107 (111)
T cd04626 69 YVNEEDTIDEALDIMR-EKQIGRLPVVDDNKLIGVVRTKD 107 (111)
T ss_pred EEcCCCcHHHHHHHHH-HcCCCeeeEeECCEEEEEEEhHH
Confidence 9999999999999995 46677888887655667666655
No 46
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.69 E-value=3.4e-08 Score=105.44 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=98.7
Q ss_pred ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
...+|+|+|++ ++.+++++++++++++.+.++ +++.+||++++ .++++|+|+.+|++.........
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~-~~sr~PV~~~~-----------~d~iiGiv~~kDll~~~~~~~~~ 132 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIES-AHSRFPVISED-----------KDHIEGILMAKDLLPFMRSDAEA 132 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhc-CCcEEEEecCC-----------CCcEEEEEEHHHHHhHhhccCCc
Confidence 35789999997 699999999999999999988 89999999754 14799999999997433222223
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh-hcCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE-RQRR 555 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~-~~~~ 555 (704)
..+.++|++ +.++.+++++.++++.| +.++.+.++|+|+ +..+|.++..++.. ++|.
T Consensus 133 ~~l~~l~r~-~~~V~e~~~l~~~L~~m-~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 133 FSMDKVLRQ-AVVVPESKRVDRMLKEF-RSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred CCHHHHcCC-CcCcCCCCcHHHHHHHH-HhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 458899986 45899999999999999 5678889999986 56688888887644 4453
No 47
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.68 E-value=6e-08 Score=109.74 Aligned_cols=119 Identities=14% Similarity=0.016 Sum_probs=99.9
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+..+++.++|.+++.++.++++++++.+.|.++ +.+.+||+|+ ++++|+|+.+|+.... ...
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~-~~~~~vVvD~-------------gklvGIVT~rDL~~~~----~~~ 146 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKR-AHGAAVVILE-------------DRPVGLVTDSDLLGVD----RFT 146 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHHhc-CCeEEEEEEC-------------CEEEEEEEHHHhhcCC----CCC
Confidence 446889999999999999999999999999887 7788888874 4799999999985432 235
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRR 555 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~ 555 (704)
+|+++|+++++++.+++++.|++++|. ..+.+.+||+|+ ++.+|.+++.++......
T Consensus 147 ~V~dIMt~~litv~~~~sL~eAl~lM~-~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 147 QVRDIMSTDLVTAPADTEPRKAFDLLE-HAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CHHHHccCCceEeCCCCcHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 799999999999999999999999995 577888899974 667899999988664443
No 48
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.67 E-value=6.3e-08 Score=86.47 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=84.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc---ccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG---IYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~---~~~~~V~dvM~~~ 506 (704)
++..+.++++++++.+.+.++ +++.+||+|++ ++++|+++..|++...... ....++.++|.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEK-NIGAVVVVDDG------------GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRN 68 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCeEEEECCC------------CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCC
Confidence 567789999999999999877 78999999876 6899999999987432221 2245799999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.++.+++++.++.+.|.+ .+...+||+++++.+|.++..+.
T Consensus 69 ~~~v~~~~~~~~~l~~~~~-~~~~~~~Vv~~~~~~Gvit~~di 110 (113)
T cd04623 69 VITVTPDDTVDEAMALMTE-RRFRHLPVVDGGKLVGIVSIGDV 110 (113)
T ss_pred cEEECCCCcHHHHHHHHHH-cCCCEeEEEeCCEEEEEEEHHHh
Confidence 9999999999999999954 55567788777666776666653
No 49
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.66 E-value=4.4e-08 Score=110.76 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=97.4
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhc----CCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKEN----RSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~----~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
..+|+++|++++.++++++|++++.+.+++. .+...+||+|++ ++++|+++.+|++... .
T Consensus 130 e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~------------~~l~GvV~l~dLl~a~----~ 193 (449)
T TIGR00400 130 DDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES------------KHLKGVLSIRDLILAK----P 193 (449)
T ss_pred cchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC------------CeEEEEEEHHHHhcCC----C
Confidence 4579999999999999999999999999851 133568889877 7899999999987643 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR 554 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~ 554 (704)
+.+|+++|++++.++++++++.|+++.|. ..+...+||+|+ ++.+|.++..+......
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~-~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQ-KYDFLAVPVVDNEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHH-HcCCCEEeEEcCCCeEEEEEEHHHHHHHHH
Confidence 35799999999999999999999999995 567788999986 56688888887765443
No 50
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.66 E-value=1.9e-08 Score=103.78 Aligned_cols=121 Identities=14% Similarity=0.230 Sum_probs=96.1
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....+-.|+|++||+++++|+++.++.++| ..++++-+||.|+ .+.+|+++..+...... + ..-+.|+-
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll-~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~---~----~p~qrlr~-- 311 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLL-QEHRIKALPVLDEHRRLVGIVTQRDLLKHAR---P----SPFQRLRF-- 311 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHH-HHcCcccccccccccceeeeeeHHHHhhccC---c----chHHHhhc--
Confidence 345678899999999999999999999999 5688999999987 55677777777543322 1 11112221
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ++.+...+|+ ++.+.+|++++-+.-..|..-+.+.+ ||+|.+|+++|||+.
T Consensus 312 ---------~--~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~l--pvld~~g~lvGIvsQ 364 (382)
T COG3448 312 ---------L--RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHAL--PVLDAAGKLVGIVSQ 364 (382)
T ss_pred ---------c--CCCcccccccCcceeecCCCcHHHHHHHhhcCCccee--eEEcCCCcEEEEeeH
Confidence 1 1226788999 99999999999999999999999987 999999999999998
No 51
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.66 E-value=5.1e-08 Score=87.21 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=85.9
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc--ccccccccccccC
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--IYNVYVEDFMVRD 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--~~~~~V~dvM~~~ 506 (704)
|++.++.++++++++.+.+.+. +...+||+|++ ++++|+++..|+....... ....++.++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~ 67 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHS-PENNFPVVDDD------------GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKP 67 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhC-CCcceeEECCC------------CCEEEEEEHHHHHHHHhcccccccEEHHHhccCC
Confidence 4677899999999999999887 78899999877 7899999999997432222 2237899999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~ 549 (704)
+.++.+++++.++++.|. ..+...+|++++ ++.+|.++..++
T Consensus 68 ~~~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~~Gvvt~~di 111 (114)
T cd04613 68 PVVVYPEDSLEDALKKFE-DSDYEQLPVVDDDPGKLLGILSRSDL 111 (114)
T ss_pred CcEEcCCCCHHHHHHHHh-hCCccEeeEEeCCCCEEEEEEEhHHh
Confidence 999999999999999995 466667888765 556776666553
No 52
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.65 E-value=3.1e-08 Score=91.63 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=83.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--ccccccccccccccC
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRD 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~ 506 (704)
+++.++.+++++.++.+.|.++ +...+||+|++ ++++|+++..|++.... ....+.+|+++|+++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~-~~~~~~Vvd~~------------~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~ 68 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEK-GFDQLPVVDES------------GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQ 68 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHc-CCCEEEEEcCC------------CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcc
Confidence 4578899999999999999887 78899999877 78999999999874322 123557899999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcC--------CCceeecccC-CCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENR--------SLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~--------rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.++++++++.++++++...+ +..-+||+++ ++.+|.+++.|.
T Consensus 69 ~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl 120 (124)
T cd04608 69 FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDL 120 (124)
T ss_pred ceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHh
Confidence 999999999999999763321 2333445554 566777776664
No 53
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.65 E-value=7.4e-08 Score=109.87 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=95.7
Q ss_pred ccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccccc
Q psy6631 424 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFM 503 (704)
Q Consensus 424 ~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM 503 (704)
+..|.++++++.+++|++|+.+++.++ +++.+||+|++. .+++++|+|+.+|+.... +.+.+|.++|
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~-~~~~lpVvD~~~---------~~GklvGIVT~~DL~~v~---~~~~~V~eIM 169 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASR-GFSSVCVTETGT---------MGSKLLGYVTKRDWDFVN---DRETKLSEVM 169 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhc-CCceEEEEeCCC---------cCCeEEEEEEHHHHhhcc---ccCCcHHHHh
Confidence 334789999999999999999999887 889999998630 126899999999986443 3467899999
Q ss_pred ccC--ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC
Q psy6631 504 VRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR 554 (704)
Q Consensus 504 ~~~--v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~ 554 (704)
+++ ++++.+++++.|+++.|. ..+.+.+||+|+ ++.+|.+++.++.....
T Consensus 170 t~~~~lvtv~~~~sL~eAl~~m~-~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 170 TSDDDLVTAPAGIDLEEAEAVLK-DSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ccCCCcEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 987 789999999999999995 577888899974 66788888888765443
No 54
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.63 E-value=8.4e-08 Score=90.21 Aligned_cols=106 Identities=12% Similarity=0.152 Sum_probs=85.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc---------------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI--------------- 494 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~--------------- 494 (704)
++.+++++++++++++.|.++ +...+||+|++ ++++|+++..|++.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~-~~~~l~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKN-GVGRVIVVDDN------------GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHc-CCCcceEECCC------------CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhc
Confidence 456789999999999999987 78899999987 79999999999874322110
Q ss_pred ----------cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 495 ----------YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 495 ----------~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
...+|+++|.++++.+.+++++.++++.|.+ .+...+||+++++.+|.++..++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~l~Vv~~~~~~Gvit~~di 132 (135)
T cd04621 69 GQKRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLE-ANISGLPVVDNDNIVGVITKTDI 132 (135)
T ss_pred ccccccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHH-cCCCEEEEEeCCEEEEEEEHHHH
Confidence 1457999999999999999999999999954 56777888877666777766653
No 55
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=85.53 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=93.1
Q ss_pred ccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc-ccccc
Q psy6631 424 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV-YVEDF 502 (704)
Q Consensus 424 ~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~-~V~dv 502 (704)
.++|.+++.++.++.++.++...|.++ +...+||++.. +++|+++..|+........... ++.++
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~-~~~~~~v~~~~-------------~l~Giit~~di~~~~~~~~~~~~~v~~v 67 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSEN-GVSAVPVVDDG-------------KLVGIITERDILRALAAGGKRLLPVKEV 67 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHc-CCCEEEEeeCC-------------EEEEEEEHHHHHHHHhccCCccccHHHh
Confidence 355668899999999999999999998 79999999864 7999999999987765554444 79999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKR 548 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~ 548 (704)
|++++.++++++++.++.+.|.+..+.+.+||++++ +.+|.+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~d 115 (117)
T COG0517 68 MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSD 115 (117)
T ss_pred ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHH
Confidence 999999999999999999999532578899999876 5677666655
No 56
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=1.2e-07 Score=84.80 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=85.4
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.+++.+++++++.+.+.+. +...+||+|++ +++|+++..|+...........++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 67 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRY-GHTALPVVEGG-------------RVVGIISRRDVEKALRHGLGHAPVKDYMSTDVV 67 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHc-CCCeeeEeeCC-------------EEEEEEEHHHHHHHHhcccccCcHHHHhcCCCE
Confidence 4677899999999999999877 77899999854 799999999986543333356789999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
++.+++++.++++.|.+ .....+||++++..+|.++..++
T Consensus 68 ~v~~~~~l~~~~~~~~~-~~~~~~~V~~~~~~~Gvvt~~di 107 (110)
T cd04595 68 TVPPDTPLSEVQELMVE-HDIGRVPVVEDGRLVGIVTRTDL 107 (110)
T ss_pred EECCCCcHHHHHHHHHH-cCCCeeEEEeCCEEEEEEEhHHh
Confidence 99999999999999954 55667777776666776666653
No 57
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=1.3e-07 Score=84.39 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=84.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.++.++++++++.+.+.++ +...+||+|++ ++++|+++..|++...... ..++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~~~--~~~~~~~~~~~~~ 66 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEE-NINHLPVVDED------------GRLVGIVTSWDISKAVARD--KKSVEDIMTRNVI 66 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhC-CCceEEEECCC------------CcEEEEEeHHHHHHHHhhC--ccCHHHhcCCCCe
Confidence 5678899999999999999887 78899999877 7999999999986432211 1348899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.++++.|. ..+...+||+++ +..+|.++..+.
T Consensus 67 ~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~G~v~~~di 107 (110)
T cd04605 67 TATPDEPIDVAARKME-RHNISALPVVDAENRVIGIITSEDI 107 (110)
T ss_pred EECCCCcHHHHHHHHH-HhCCCEEeEECCCCcEEEEEEHHHh
Confidence 9999999999999995 466667888865 456777766654
No 58
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.59 E-value=8.2e-08 Score=86.14 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=84.3
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc----ccccccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS----SGIYNVYVEDFMV 504 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~----~~~~~~~V~dvM~ 504 (704)
+++.++.++++++++.+.+.++ +.+.+||+|++ ++++|+++..|+..... ......++.++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~ 67 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKS-KISGGPVVDDN------------GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMT 67 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhc-CCCCccEECCC------------CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhc
Confidence 3567889999999999999876 67889999877 78999999999864321 1224567899999
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+++.++.+++++.++.+.|.+ .+...+||++++..+|.++..++
T Consensus 68 ~~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Gvit~~di 111 (114)
T cd04629 68 TEVLTVSPDDSIVDLAQLMLK-AKPKRYPVVDDGKLVGQISRRDV 111 (114)
T ss_pred cCceEECCCCcHHHHHHHHHH-hCCCccCEEECCEEEEEEEHHHH
Confidence 999999999999999999965 44456777776666777766654
No 59
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.59 E-value=2e-07 Score=83.28 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=83.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++.+.+.++ ++..+||+|++ ++++|+++..|++... ...++.++|.+++.+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~~ 65 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKET-GHSRFPVVDEK------------NKVVGIVTSKDVAGKD----PDTTIEKVMTKNPIT 65 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHc-CCCceeEECCC------------CeEEEEecHHHHhccc----ccccHHHHhcCCCeE
Confidence 577899999999999999887 77899999877 7999999998886432 245799999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++.+.|. ......+||+++ ++.+|.++..++
T Consensus 66 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~G~it~~di 105 (108)
T cd04596 66 VNPKTSVASVAHMMI-WEGIEMLPVVDDNKKLLGIISRQDV 105 (108)
T ss_pred ECCCCCHHHHHHHHH-HcCCCeeeEEcCCCCEEEEEEHHHh
Confidence 999999999999995 455667888874 555776666553
No 60
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=2.8e-07 Score=81.37 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=82.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++++.+.++ +...+||+| + ++++|+++..|+.... ...++.++|.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d-~------------~~~~Giv~~~~l~~~~----~~~~~~~~~~~~~~~ 63 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKH-RIGGLPVVE-D------------GKLVGIITSRDVRRAH----PNRLVADAMTREVVT 63 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCEEEEEE-C------------CEEEEEEehHHhhccc----ccCCHHHHccCCCEE
Confidence 567789999999999999877 778999997 4 5899999999987643 234688999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+.+.+||+++++.+|.++..++
T Consensus 64 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~G~it~~~l 102 (105)
T cd04599 64 ISPEASLLEAKRLME-EKKIERLPVLRERKLVGIITKGTI 102 (105)
T ss_pred ECCCCCHHHHHHHHH-HcCCCEeeEEECCEEEEEEEHHHh
Confidence 999999999999995 456777888887666776666553
No 61
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.58 E-value=2e-07 Score=83.30 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=84.8
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--CcccccccccccccccC
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIYNVYVEDFMVRD 506 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~~~~V~dvM~~~ 506 (704)
+++.+++++++++++.+.+.++ +.+.+||+|++ +++|+++..|+... ........++.++|.++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~i~V~~~~-------------~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~ 66 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEH-RVSSLLVVDDG-------------RLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAP 66 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHc-CCCeEEEEECC-------------EEEEEEEhHHHHHHHhccCCCccCCHHHHhCCC
Confidence 3567889999999999999877 67899999754 79999999998642 22222346789999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
++.+.+++++.++.+.|.. .+...+|+++++..+|.++..++.
T Consensus 67 ~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 67 PITIPPDATVFEALLLMLE-RGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred CeEECCCCcHHHHHHHHHH-cCCCeeeEeECCEEEEEEEHHHhh
Confidence 9999999999999999954 556678888766667877776643
No 62
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=8.9e-08 Score=89.32 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=83.9
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc----------------
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS---------------- 492 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~---------------- 492 (704)
+++.++.++++++++.+.+.++ +++.+||+|++ ++++|+|+..|+......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vvd~~------------~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDN-HISGLPVVDDD------------GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGA 68 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHc-CCCCceEECCC------------CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence 5677899999999999999987 78899999876 789999999998642111
Q ss_pred --------cccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 493 --------GIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 493 --------~~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
.....++.++|.+++.++.+++++.++.+.|.+ .+...+||++++..+|.++..+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~l~Vvd~g~~~Gvit~~d 131 (135)
T cd04586 69 EELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEE-HRIKRVPVVRGGRLVGIVSRAD 131 (135)
T ss_pred HHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHH-cCCCccCEecCCEEEEEEEhHh
Confidence 113467899999999999999999999999954 5555677777555667666655
No 63
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.58 E-value=1.8e-07 Score=83.80 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=85.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC-cccccccccccccccCce
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS-SSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~-~~~~~~~~V~dvM~~~v~ 508 (704)
++.++.++++++++.+.+.+. +...+||+|++ ++++|+++..|++... ...+....+.++|.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 68 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEE-NVGSVVVVDPD------------ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLV 68 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHc-CCCEEEEECCC------------CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCE
Confidence 466789999999999999877 78899999877 7899999999986432 222345678899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.++.+.|. ..+...+||+++ +...|.++..++
T Consensus 69 ~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~g~~~Gilt~~dl 109 (112)
T cd04624 69 TVDPDEPVAEAAKLMR-KNNIRHHLVVDKGGELVGVISIRDL 109 (112)
T ss_pred EECCCCcHHHHHHHHH-HcCccEEEEEcCCCcEEEEEEHHHh
Confidence 9999999999999995 456678888875 555776666653
No 64
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.57 E-value=1.4e-07 Score=107.56 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=95.4
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVED 501 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~d 501 (704)
++++.|.+++.++++++|++++.+++.++ +++.+||+|++. .+++++|+|+.+|+.... ..+.+|+|
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~-~~s~vpVvd~~~---------~~gkLvGIVt~~DL~~~~---~~~~~V~d 163 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKK-GFSSILITVDGK---------VGGKLLGIVTSRDIDFVK---DKSTPVSE 163 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHc-CCcEEEEEeCCc---------cCCeEEEEEEHHHHhhcc---cCCCCHHH
Confidence 37788999999999999999999999887 899999998630 126899999999986433 23568999
Q ss_pred cccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh
Q psy6631 502 FMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE 551 (704)
Q Consensus 502 vM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~ 551 (704)
+|++ +++++.+++++.|+.++|. ..+.+.+||+|+ +..++.+++.++..
T Consensus 164 iMt~~~~lvtv~~~~sl~eAl~lm~-e~~i~~LPVVd~~g~liGIIT~~DIl~ 215 (495)
T PTZ00314 164 VMTPREKLVVGNTPISLEEANEVLR-ESRKGKLPIVNDNGELVALVSRSDLKK 215 (495)
T ss_pred hhCCcCCceEeCCCCCHHHHHHHHH-HcCCCeEEEEcCCCcEEEEEEehHhhh
Confidence 9998 8999999999999999995 577888899875 55677777777654
No 65
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.57 E-value=1.5e-07 Score=85.67 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=84.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc-----------ccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG-----------IYNVY 498 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~-----------~~~~~ 498 (704)
++.++.++++++++.+.|.+. +.+.+||++++ ++++|+++..|++...... ....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREH-RIRHLPVVNED------------GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVP 68 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHc-CcccccEECCC------------CCEEEEEEHHHHHHHhccccccccccccccccCcC
Confidence 466789999999999999987 78899999876 7899999999986432211 13567
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.++|.+++.++.+++++.++.+.|. ..+.+.+||+++ +..+|.++..++
T Consensus 69 v~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~dl 119 (122)
T cd04803 69 VAEVMKTDVLTVTPDTPLREAAEIMV-ENKIGCLPVVDDKGTLVGIITRSDF 119 (122)
T ss_pred HHHhhCCCCeEeCCCCcHHHHHHHHH-HcCCCeEEEEcCCCCEEEEEEHHHh
Confidence 89999999999999999999999995 455667888876 556776666553
No 66
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.57 E-value=3.9e-07 Score=81.04 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=83.7
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++..+.++++++++.+.+.++ ++..+||+|++ ++++|+++.+|+..... ...++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~---~~~~v~~~~~~~~~ 65 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEY-GISGLPVVDDD------------GKLVGIVTNRDLRFETD---LDKPVSEVMTPENL 65 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHc-CCceEEEEcCC------------CEEEEEEEhhHeeeccc---CCCCHHHhcccCce
Confidence 4567889999999999999877 78899999877 79999999999864322 34678999998888
Q ss_pred EEeC-CCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWN-NMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~-d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.+.+ ++++.++++.|.+ .+.+.+||+++ ++.+|.++..+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~~Gvi~~~di 107 (110)
T cd04601 66 LTTVEGTSLEEALELLHE-HKIEKLPVVDDEGKLKGLITVKDI 107 (110)
T ss_pred EEecCCCCHHHHHHHHHH-hCCCeeeEEcCCCCEEEEEEhhhh
Confidence 8888 9999999999954 55667888875 666776666653
No 67
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.56 E-value=2.2e-07 Score=82.89 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=85.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++..++++++++++.+.+.+. +.+.+||++++ +++|+++..|++..........++.++|.+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~ 66 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTH-HIHGAPVVDDG-------------KLVGIVTLSDIAHAIARGLELAKVKDVMTKDVI 66 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHc-CCCEEEEeeCC-------------EEEEEEEHHHHHHHHhccccccCHHHHhcCCce
Confidence 3567889999999999999887 78899999754 799999999987654433334678999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.|+.+.|. ..+.+.+||+++ ++..|.++..+.
T Consensus 67 ~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~i~~~dl 107 (110)
T cd04588 67 TIDEDEQLYDAIRLMN-KHNVGRLIVTDDEGRPVGIITRTDI 107 (110)
T ss_pred EECCCCCHHHHHHHHH-hcCCCEEEEECCCCCEEEEEEhHHh
Confidence 9999999999999995 456677888876 555676666553
No 68
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.56 E-value=1.7e-07 Score=84.57 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=83.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc--ccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--IYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--~~~~~V~dvM~~~v 507 (704)
++..+.++++++++.+.|.+. +...+||+|++ ++++|+++.+|+....... ....++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIES-KHGSALVVDRD------------GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPL 68 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhC-CCcEEEEEcCC------------CCEEEEEEHHHHHHHHhcccccccccHHHhccCCc
Confidence 456789999999999999887 78899999877 7899999999987543222 23445889999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccCC---CceEEeehHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVESS---GKFEQMEIKR 548 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~---~~~~~i~~~~ 548 (704)
+++.+++++.++++.|. ..+...+||++++ +.+|.++..+
T Consensus 69 ~~v~~~~~l~~~l~~~~-~~~~~~~~Vvd~~~~~~~~Gvit~~d 111 (115)
T cd04593 69 LTVHPDEPLAHALDRMA-SRGLRQLPVVDRGNPGQVLGLLTREN 111 (115)
T ss_pred eEECCCCCHHHHHHHHH-HcCCceeeEEeCCCCCeEEEEEEhHH
Confidence 99999999999999995 4667778888753 4566555554
No 69
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.56 E-value=1.6e-07 Score=104.94 Aligned_cols=122 Identities=12% Similarity=0.073 Sum_probs=99.4
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+.+++|+|+|++ ++.+++.+++++|+.+.+.++ +++.+||++++ ..+++|+|+.+|++...+. .
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~-~~sR~PV~~~~-----------~d~ivGiv~~kDll~~~~~--~ 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIEN-GYSRIPVYKET-----------IDNITGVLYIKDLLPHLNK--K 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhC-CCCEEEEEcCC-----------CCceEEEEEHHHHHhHhcc--C
Confidence 456799999996 799999999999999999998 89999999864 1479999999999743222 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhh-hcCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREE-RQRR 555 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~-~~~~ 555 (704)
...++++|++ +.+|.+++++.++++.| +.++.+..+|+|+ ++..|.++..|... ++|.
T Consensus 254 ~~~l~~~~~~-~~~Vpe~~~l~~ll~~m-~~~~~~~aiVvDE~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 254 NFDWQSLLRE-PYFVPENKKLDDLLRDF-QEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred CCCHHHHcCC-CeEeCCCCcHHHHHHHH-HhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCC
Confidence 3457888874 78999999999999999 5678888999987 66688888877643 4453
No 70
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.56 E-value=2.5e-07 Score=83.20 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=83.7
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC-CcccccccccccccccCceE
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP-SSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~-~~~~~~~~~V~dvM~~~v~t 509 (704)
..++.++++++++.+.+.+. +...+||+|++ ++++|+++.+|+... ........++.++|.+++.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~ 70 (113)
T cd04607 4 QLLVSPDASILDALRKIDKN-ALRIVLVVDEN------------GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPIT 70 (113)
T ss_pred ceEECCCCCHHHHHHHHHhc-CcCEEEEECCC------------CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEE
Confidence 45689999999999999887 78899999877 789999999998642 22223346789999999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+...+||+++ ++.+|.++..+.
T Consensus 71 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~di 110 (113)
T cd04607 71 AKVGSSREEILALMR-ERSIRHLPILDEEGRVVGLATLDDL 110 (113)
T ss_pred EcCCCCHHHHHHHHH-HCCCCEEEEECCCCCEEEEEEhHHh
Confidence 999999999999995 466777888874 555776666553
No 71
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.56 E-value=2.1e-07 Score=106.18 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=94.6
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVED 501 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~d 501 (704)
+++|+|.+++.++.++++++++.+.+.++ +++.+||+|++ ++++|+|+.+|+.... ....++.+
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~-~~~~lpVvd~~------------g~lvGiVt~~DL~~~~---~~~~~V~d 151 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARY-GISGVPVVDEN------------GKLVGIITNRDVRFET---DLSQPVSE 151 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHh-CCCEEEEEccC------------CEEEEEEEHHHhhhcc---cCCCcHHH
Confidence 47899999999999999999999999988 89999999977 7999999999986432 23467999
Q ss_pred ccc-cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 502 FMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 502 vM~-~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
+|+ ++++++.+++++.++.+.|. ..+...+||+|+ +..+|.++..++.
T Consensus 152 im~~~~~v~v~~~~sl~eal~~m~-~~~~~~lpVVDe~g~lvGiIT~~DLl 201 (486)
T PRK05567 152 VMTKERLVTVPEGTTLEEALELLH-EHRIEKLPVVDDNGRLKGLITVKDIE 201 (486)
T ss_pred HcCCCCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEEEhHHhh
Confidence 999 78999999999999999995 567778999976 4556666666543
No 72
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.55 E-value=3.1e-07 Score=81.34 Aligned_cols=101 Identities=10% Similarity=0.042 Sum_probs=82.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.+++++++++++.+.+.++ +...+||+|++ ++++|+++..|++.... .++.++|.+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~-~~~~~~v~d~~------------g~~~Giv~~~dl~~~~~-----~~~~~~~~~~~~~ 63 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDS-DLRALTVVDAD------------GQPLGFVTRREAARASG-----GCCGDHAEPFKVT 63 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhc-CCCEEEEECCC------------CCEEEEEeHHHHHHhcc-----cchhhhcccCCEE
Confidence 567889999999999999877 67899999876 78999999999875321 3478999998899
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++++.|. ..+.+.+||+++ ++.+|.++..+.
T Consensus 64 ~~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvi~~~~l 103 (106)
T cd04582 64 VSVDDDLRIVLSRMF-AHDMSWLPCVDEDGRYVGEVTQRSI 103 (106)
T ss_pred ECCCCCHHHHHHHHH-HCCCCeeeEECCCCcEEEEEEHHHh
Confidence 999999999999995 467788899876 456777766653
No 73
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.55 E-value=1.6e-07 Score=86.49 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---------------ccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---------------SGI 494 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---------------~~~ 494 (704)
++.++.++++++++.+++.+. +.+.+||+|++ ++++|+++..|+..... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd04632 2 DVITVREDDSVGKAINVLREH-GISRLPVVDDN------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERM 68 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHc-CCCEEEEECCC------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhh
Confidence 567889999999999999987 78999999987 78999999988863210 012
Q ss_pred cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC---CCceEEeehHH
Q psy6631 495 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---SGKFEQMEIKR 548 (704)
Q Consensus 495 ~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~---~~~~~~i~~~~ 548 (704)
...++.++|.++++++.+++++.|+++.|.+. +.+.+||++. ++.+|.++..+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~-~~~~~~V~~~~~~~~~~Gvit~~d 124 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLEN-DDSSVVVVTPDDDTKVVGILTKKD 124 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhC-CCCeEeEeccCCCCcEEEEEEhHh
Confidence 23578899999999999999999999999653 4567777643 55677666655
No 74
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=2.1e-07 Score=83.42 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=84.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--CcccccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~~~~V~dvM~~~v 507 (704)
++.++.+++++.++.+.+.+. +...+||+|++ ++++|+++.+|+... ........++.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvd~~------------~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~ 68 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTS-GSRALPVVDDK------------KRLVGIITRYDVLSYALESEELKDAKVREVMNSPV 68 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHc-CCceEeEEcCC------------CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCc
Confidence 356789999999999999887 78899999876 789999999998753 222234567899999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.+++++.|+++.|. ..+...+|++++ ++.+|.++..++
T Consensus 69 ~~v~~~~~l~~~~~~~~-~~~~~~~~Vvd~~g~~~Gvvt~~dl 110 (113)
T cd04615 69 ITIDANDSIAKARWLMS-NNNISRLPVLDDKGKVGGIVTEDDI 110 (113)
T ss_pred eEECCCCcHHHHHHHHH-HcCCCeeeEECCCCeEEEEEEHHHh
Confidence 99999999999999994 455566788875 455776666654
No 75
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=1.5e-07 Score=87.32 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=83.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc--cc------------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--IY------------ 495 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--~~------------ 495 (704)
++.++.++++++++.+.+.+. +.+.+||+|++ ++++|+++..|+....... ..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTG-KISGVPVVDNE------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHh-CCCccceECCC------------CCEEEEEeHHHHHHHHhccCCcccccccccccccc
Confidence 467889999999999999887 78899999877 7899999999886432111 11
Q ss_pred --------ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 496 --------NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 496 --------~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
..++.++|.+++..+.+++++.++.+.|.+ .+...+||+++++.+|.++..++
T Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~V~~~~~~iGvit~~dl 129 (132)
T cd04636 69 ESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSK-KNIKRLPVVDDGKLVGIISRGDI 129 (132)
T ss_pred hHHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHH-CCCCeeEEEECCEEEEEEEHHHh
Confidence 127889999999999999999999999954 55667788877666676666653
No 76
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=2e-07 Score=83.84 Aligned_cols=104 Identities=16% Similarity=0.256 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc----cc---cccccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS----GI---YNVYVEDF 502 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~----~~---~~~~V~dv 502 (704)
++.++++++++.++.+.+.++ +...+||+|++ ++++|+++..|+...... .. ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKH-GYSAIPVLDKE------------GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHC-CCceeeeECCC------------CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH
Confidence 467899999999999999887 78899999876 789999999998643221 11 15679999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
|.+++.++.+++++.++++.|.+.+ .+||+++ ++.+|.++..+.
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~---~~~Vv~~~~~~~Gvit~~di 113 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP---FLPVVDDDGIFIGIITRREI 113 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC---ceeEEeCCCeEEEEEEHHHh
Confidence 9999999999999999999996533 4677765 556776666653
No 77
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=3.3e-07 Score=83.34 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=83.3
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc-----cc------cccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS-----SG------IYNV 497 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~-----~~------~~~~ 497 (704)
+++.+++++++++++.+.+.++ +++.+||+|++ ++++|+++..|++.... .. ....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLES-GFTGLPVVQKA------------GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASP 67 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHc-CCCcccEECCC------------CcEEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence 3567899999999999999877 78899999877 79999999999874311 11 2356
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++.++|.+++..+.+++++.++.+.|. ..+...+||+++ ++.+|.++..+
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~Vvd~~g~~~Gvit~~d 118 (122)
T cd04635 68 TVEKIMSTPVYSVTPDDSIATAVELML-EHDIGRLPVVNEKDQLVGIVDRHD 118 (122)
T ss_pred cHHHHhcCCCeeECCCCCHHHHHHHHH-HcCCCeeeEEcCCCcEEEEEEhHH
Confidence 788999999999999999999999995 455666777775 45566555544
No 78
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=3.1e-07 Score=84.60 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=82.6
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc--c-----------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY--N----------- 496 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~--~----------- 496 (704)
++.+++++++++++.+.|.++ +.+.+||+|++ ++++|+++..|++........ .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~-~~~~i~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKN-NISGLPVVDEK------------GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSE 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHh-CCCcccEECCC------------CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhh
Confidence 567899999999999999877 78899999877 789999999998754322221 1
Q ss_pred --cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 497 --VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 497 --~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
....+.|.+++.++.+++++.|+.+.|. ..+...+||+++ ++.+|.++..++
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~-~~~~~~l~Vvd~~~~~~Giit~~di 123 (126)
T cd04642 69 KFTDSDGVKSRPLITCTPSSTLKEVITKLV-ANKVHRVWVVDEEGKPIGVITLTDI 123 (126)
T ss_pred hcccccccccCCCeEECCCCcHHHHHHHHH-HhCCcEEEEECCCCCEEEEEEHHHH
Confidence 1233578888999999999999999995 456677888876 566777776653
No 79
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.52 E-value=2e-07 Score=85.89 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC------c--cccccccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS------S--SGIYNVYVED 501 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~------~--~~~~~~~V~d 501 (704)
++.++.++++++++++.|.++ +...+||+|++ ++++|+++..|+.... . ..+...++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~ 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKH-GVRLLLVVDSD------------DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVAD 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHc-CCcEEEEEcCC------------CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHH
Confidence 356789999999999999877 77899999977 7899999999987421 1 1234567999
Q ss_pred ccccCceEE------eCCCCHHHHHHHhHhcCCCceeecccCC--CceEEeehHHH
Q psy6631 502 FMVRDVKYI------WNNMTYRDLKNLLKENRSLRVFPLVESS--GKFEQMEIKRR 549 (704)
Q Consensus 502 vM~~~v~tV------~~d~sl~ea~~~m~~~~rl~Vvpvv~~~--~~~~~i~~~~~ 549 (704)
+|+++...+ .+++++.|+++.|. ..+.+.+||++++ ..+|.++..++
T Consensus 69 im~~~~~~~~~~~~~~~~~~l~~~l~~m~-~~~~~~lpVvd~~~~~~~G~it~~di 123 (126)
T cd04640 69 VMTPKEDLKALDLEELENASVGDVVETLK-ASGRQHALVVDREHHQIRGIISTSDI 123 (126)
T ss_pred hcCchhhhccccHHHhccCcHHHHHHHHH-HCCCceEEEEECCCCEEEEEEeHHHH
Confidence 998776544 37899999999995 5667788888764 55777776664
No 80
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.52 E-value=3.6e-07 Score=81.40 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=83.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-cccccccccccCce
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI-YNVYVEDFMVRDVK 508 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~-~~~~V~dvM~~~v~ 508 (704)
++.++.++++++++.+.+.++ +...+||+|+ ++++|+++..|+......+. ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 67 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRER-RISSIVVVDD-------------GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLL 67 (111)
T ss_pred CceEECCCCcHHHHHHHHHHc-CCCEEEEeeC-------------CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCce
Confidence 456789999999999999887 6889999975 48999999999875443333 46779999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
.+.+++++.++++.|. ..+.+.++|+++ +...|.++..+
T Consensus 68 ~~~~~~~l~~~l~~~~-~~~~~~~~Vv~~~~~~~Gvi~~~d 107 (111)
T cd04611 68 TVPADTSLYDARQLMR-EHGIRHLVVVDDDGELLGLLSQTD 107 (111)
T ss_pred EECCCCCHHHHHHHHH-HcCCeEEEEECCCCcEEEEEEhHH
Confidence 9999999999999995 466677888876 45567666554
No 81
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.52 E-value=3.5e-07 Score=81.86 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=82.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCC--c-cccccccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPS--S-SGIYNVYVEDFMVR 505 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~--~-~~~~~~~V~dvM~~ 505 (704)
|++.+++++++++++.+.+.+. +.+.+||+|++ +++|+++..|++... . ......++.++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTEN-NIGRLIVVDNE-------------KPVGIITERDLVKKVVSRNLKPREVPVGEVMST 66 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHC-CCCEEEEEECC-------------EEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC
Confidence 3567789999999999999887 78899999854 799999999987532 1 12345678999999
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
+++.+.+++++.++++.|.+ .+...+||+++++.+|.++..+
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Gvi~~~d 108 (112)
T cd04802 67 PLITIDPNASLNEAAKLMAK-HGIKRLPVVDDDELVGIVTTTD 108 (112)
T ss_pred CcEEECCCCCHHHHHHHHHH-cCCCeeEEeeCCEEEEEEEhhh
Confidence 99999999999999999954 5565678887655566665554
No 82
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=2.9e-07 Score=82.41 Aligned_cols=105 Identities=13% Similarity=0.204 Sum_probs=81.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc---ccccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS---SGIYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~---~~~~~~~V~dvM~~~ 506 (704)
++.++.++++++++.+.+.++ +...++|.+ + ++++|+++..|++.... ..+...++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~~-~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~ 67 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQ-DLGSLVVME-R------------GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPE 67 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCCeEEEee-C------------CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCC
Confidence 467789999999999999776 566666654 4 58999999999874322 123346799999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.++.+++++.++++.|. ..+.+.+||+++++.+|.++..++
T Consensus 68 ~~~v~~~~~l~~a~~~m~-~~~~~~l~Vv~~~~~~Gvvt~~dl 109 (112)
T cd04625 68 PIVASPDDSIDEVRRLMV-ERHLRYLPVLDGGTLLGVISFHDV 109 (112)
T ss_pred CeEECCCCCHHHHHHHHH-HcCCCeeeEEECCEEEEEEEHHHh
Confidence 999999999999999995 455667788876666777776654
No 83
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.49 E-value=1.4e-07 Score=88.85 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=73.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc-c------------
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY-N------------ 496 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~-~------------ 496 (704)
++.++.++++++++++.|.++ +...+||+|++ ++++|+|+..|++........ .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~-~~~~~~VvD~~------------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDE-KQSCVLVVDSD------------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT 68 (133)
T ss_pred CceEECCCCCHHHHHHHHHHc-CCCEEEEECCC------------CeEEEEEEHHHHHHHHhhccccccccchhhccccc
Confidence 567899999999999999877 78899999987 799999999998743221111 0
Q ss_pred ccccccc---------ccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC
Q psy6631 497 VYVEDFM---------VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538 (704)
Q Consensus 497 ~~V~dvM---------~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~ 538 (704)
..+.++| +++++++.+++++.|+++.|. ..+.+.+||++++
T Consensus 69 ~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~-~~~~~~lPVvd~~ 118 (133)
T cd04592 69 CLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLME-AKGVKQLPVVKRG 118 (133)
T ss_pred ccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHH-HcCCCcCCEecCC
Confidence 1133454 577999999999999999995 4677777887753
No 84
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.49 E-value=3.2e-07 Score=103.68 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=96.6
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+.++.|.+++.++.++++++|+++.+.++ +++.+||+|++. ..++++|+|+.+|++... ....+++
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~-~~s~lpVvd~~~---------~~~~lvGIVt~rDL~~~~---~~~~~V~ 146 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLELMERK-GISGIPVVEDGD---------MTGKLVGIITKRDIRFVK---DKGKPVS 146 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHHHHHHc-CCCEEEEEeCCC---------CCCeEEEEEEHHHHhhhh---cCCCCHH
Confidence 457888999999999999999999999988 899999998650 114899999999996432 2356899
Q ss_pred cccc-cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhh
Q psy6631 501 DFMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREER 552 (704)
Q Consensus 501 dvM~-~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~ 552 (704)
++|+ ++++++.+++++.++.+.|. .++.+.+||+|+ +..+|.++..++...
T Consensus 147 dvm~~~~~~~V~~~~sl~eal~~m~-~~~~~~lpVVDe~G~lvGiVT~~DIl~~ 199 (450)
T TIGR01302 147 EVMTREEVITVPEGIDLEEALKVLH-EHRIEKLPVVDKNGELVGLITMKDIVKR 199 (450)
T ss_pred HhhCCCCCEEECCCCcHHHHHHHHH-HcCCCeEEEEcCCCcEEEEEEhHHhhhc
Confidence 9999 59999999999999999994 577788899886 556777777776543
No 85
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.49 E-value=3.7e-07 Score=81.68 Aligned_cols=105 Identities=9% Similarity=-0.034 Sum_probs=83.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--ccccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--SGIYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--~~~~~~~V~dvM~~~v 507 (704)
++.+++++++++++.+.+.+. +...+||+|++ +++|+++..|++.... ......++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~-------------~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 67 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREH-GADALLVRDGD-------------PRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPL 67 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCEEEEecCC-------------eEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCc
Confidence 466789999999999999877 77889999754 6899999988864321 1234567899999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
..+.+++++.++++.|. ..+.+.+||+++++.+|.++..++
T Consensus 68 ~~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~G~it~~dl 108 (111)
T cd04589 68 ITVDPDDFLFNALLLMT-RHRIHRVVVREGGEVVGVLEQTDL 108 (111)
T ss_pred EEECCCCcHHHHHHHHH-HhCccEEEEeeCCEEEEEEEhHHh
Confidence 99999999999999995 466778888877666776666553
No 86
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.48 E-value=5.3e-07 Score=81.47 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=83.2
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc------------cccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG------------IYNV 497 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~------------~~~~ 497 (704)
++.++.++++++++.+.+.+. +...+||+|++ +++|+++..|+....... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~~-------------~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKEN-SIRRLPVVDRG-------------KLVGIVTDRDLKLASPSKATTLDIWELYYLLSKI 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhC-CcceeeEecCC-------------eEEEEEeHHHHHHhhhcccccccchhhhhhhccc
Confidence 467889999999999999887 67899999854 799999999987543211 1235
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.++|.++++++.+++++.++.+.|. ..+.+.+||+++ +..+|.++..++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvvt~~di 119 (122)
T cd04585 68 KVSDIMTRDPITVSPDASVEEAAELML-ERKISGLPVVDDQGRLVGIITESDL 119 (122)
T ss_pred CHHHhccCCCeEeCCCCcHHHHHHHHH-HcCCCceeEECCCCcEEEEEEHHHh
Confidence 788999999999999999999999995 455667788876 566777666654
No 87
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=6.2e-07 Score=79.09 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=75.3
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.++.++++++++.+.|.++ +.+.+||+|++ ++++|+++..|+.... .+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~d~~------------~~~~Giv~~~dl~~~~---------------~~~ 52 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELA-NVKALPVLDDD------------GKLSGIITERDLIAKS---------------EVV 52 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHc-CCCeEEEECCC------------CCEEEEEEHHHHhcCC---------------CcE
Confidence 3577899999999999999877 78899999877 7899999999986532 178
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.+++++.++.+.|. ..+...+||+++ ++.+|.++..+.
T Consensus 53 ~v~~~~~l~~a~~~m~-~~~~~~lpVv~~~~~~~Giit~~di 93 (96)
T cd04614 53 TATKRTTVSECAQKMK-RNRIEQIPIINGNDKLIGLLRDHDL 93 (96)
T ss_pred EecCCCCHHHHHHHHH-HhCCCeeeEECCCCcEEEEEEHHHh
Confidence 9999999999999995 467778888876 555676666553
No 88
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=3.4e-07 Score=83.59 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=84.8
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-------------c
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI-------------Y 495 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~-------------~ 495 (704)
+++.++.+++++.++++.|.+. +...+||+|++ .++++|+|+..|+.....+.. .
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~i~V~d~~-----------~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRN-GFRRLPVVDEG-----------TGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAI 68 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHc-CcccceeEeCC-----------CCEEEEEEEHHHHHHHhhccchhccccccccchhh
Confidence 3567889999999999999887 78899999863 168999999999864322111 2
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
..++.++|.++++++.+++++.++++.|. ..+.+.++|+++ ++.+|.++..++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~~~~~~~~Gvit~~di 122 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELML-EKRVGGLPVVDDDGKLVGIVTERDL 122 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHH-HcCCceEEEEcCCCcEEEEEEHHHh
Confidence 35788999999999999999999999995 455667888876 566777766653
No 89
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.47 E-value=4.6e-07 Score=80.70 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=83.9
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc-ccccccccccCc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY-NVYVEDFMVRDV 507 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~-~~~V~dvM~~~v 507 (704)
+++.++.++++++++.+.|.+. +.+.+||+|++ +++|+++..|+......... ...+.++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGE-RHRGYPVVDDG-------------RLVGIVTLADIRRVPAEGREATVLVGDVMTRDP 66 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHc-CCCcceEeeCC-------------eEEEEEEHHHHHHHHhcCcccccCHHHhccCCC
Confidence 3567899999999999999887 67899999754 79999999998754332221 136789999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.+++++.++++.|. ..+...+||.++ +..+|.++..++
T Consensus 67 ~~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~it~~di 108 (111)
T cd04612 67 VTASPDETLRDALKRMA-ERDIGRLPVVDDSGRLVGIVSRSDL 108 (111)
T ss_pred eEECCCCCHHHHHHHHH-hCCCCeeeEEcCCCCEEEEEEHHHh
Confidence 99999999999999995 456667888875 666777766654
No 90
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.47 E-value=6.3e-07 Score=80.92 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=82.4
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++++.+.+. +...+||+|+. .++++++|+++.+|+..... ...+++++|.++..+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~V~d~~---------~~~~~~~G~v~~~dl~~~~~---~~~~v~~~~~~~~~~ 69 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKK-GFSGIPVTEDG---------KSGGKLLGIVTSRDIDFLTD---SETPLSEVMTPREVL 69 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHc-CCCceEEeeCC---------CcCCEEEEEEEhHHhhhhhc---cCCCHHHhcCCCceE
Confidence 456789999999999999876 77899999862 00278999999988864322 235689999998888
Q ss_pred EeC--CCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWN--NMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~--d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.. ++++.++++.|. ..+.+.+||+++ ++.+|.+++.+.
T Consensus 70 ~~~~~~~~l~~~l~~~~-~~~~~~~pVv~~~~~~~Gvit~~di 111 (114)
T cd04602 70 VVAPTGITLEEANEILR-ESKKGKLPIVNDDGELVALVTRSDL 111 (114)
T ss_pred EECCCCCCHHHHHHHHH-hcCCCceeEECCCCeEEEEEEHHHh
Confidence 877 999999999995 577778888875 556776666653
No 91
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.47 E-value=7.1e-07 Score=79.87 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=82.7
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Cccc-cccccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSG-IYNVYVEDFMVR 505 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~-~~~~~V~dvM~~ 505 (704)
+++.++.++++++++.+.+.++ +.+.+||+|+ ++++|+++..|++.. .+.. ....++.++|.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~~~-------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREH-DVGALPVCEN-------------DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR 66 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHc-CCCEEEEeeC-------------CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC
Confidence 3567899999999999999887 7889999975 489999999987521 1112 222359999999
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.++.+++++.++.+.|. ..+...+||+++ ++.+|.++..++
T Consensus 67 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~it~~di 110 (113)
T cd04622 67 GVVTVTEDDDVDEAARLMR-EHQVRRLPVVDDDGRLVGIVSLGDL 110 (113)
T ss_pred CccEECCCCCHHHHHHHHH-HcCCCeeeEECCCCcEEEEEEHHHh
Confidence 9999999999999999994 466667788875 555776666654
No 92
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.45 E-value=6e-07 Score=79.69 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=82.8
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++..+.++.+++++.+.+.++ +...+||+|++ ++++|+++..|++.... ...++.++|.++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~dl~~~~~---~~~~v~~~~~~~~~ 65 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDK-KVDSLLVVDKD------------NKLLGIVSLESLEQAYK---EAKSLEDIMLEDVF 65 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHC-CCceEEEEcCC------------CcEEEEEEHHHHHHHhh---cCCcHhHhhcCCce
Confidence 3567789999999999999887 78899999876 78999999999865332 12468899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++++++++.++.+.|. ..+...+|++++ ++.+|.++..+
T Consensus 66 ~v~~~~~~~~~~~~~~-~~~~~~~~vv~~~g~~~Gvit~~~ 105 (109)
T cd04583 66 TVQPDASLRDVLGLVL-KRGPKYVPVVDEDGKLVGLITRSS 105 (109)
T ss_pred EECCCCcHHHHHHHHH-HcCCceeeEECCCCeEEEEEehHH
Confidence 9999999999999995 456667888875 45566666554
No 93
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.45 E-value=2.9e-07 Score=82.53 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=80.5
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcC-CeeEEEeecCCCCCCCCcccccccccccccccCc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYD-SIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDV 507 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~-~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v 507 (704)
.+..++.++++++++.+.+.+. +.+.+||+|+. . .++++|+++.+|+...... +|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~----------~~~~~~~G~v~~~dl~~~~~~---------~m~~~~ 61 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTT-SHNGFPVVDST----------EESPRLVGYILRSQLVVALKN---------YIDPSP 61 (105)
T ss_pred CceEEecccccHHHHHHHHHhC-CCCCcceEcCC----------CCCCEEEEEEeHHHHHHHHHH---------hccCCC
Confidence 3567889999999999999887 67889999872 0 1789999999888543221 899999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
.++++++++.++.+.|. ..+...+||+++++.+|.+++.++
T Consensus 62 ~~v~~~~~l~~~~~~~~-~~~~~~~pVv~~~~~~Gvvt~~dl 102 (105)
T cd04591 62 FTVSPRTSLEKVHQLFR-KLGLRHLLVVDEGRLVGIITRKDL 102 (105)
T ss_pred ceECCCCcHHHHHHHHH-HcCCCEEEEEECCeEEEEEEhhhh
Confidence 99999999999999995 567778888877766777766654
No 94
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.44 E-value=4.5e-07 Score=81.19 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=83.4
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--cccccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~V~dvM~~~v 507 (704)
+..+++++++++++.+.+.+. +.+.+||+|++ ++++|+++..++...... .....++.++|.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~d~~------------~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~ 69 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRK-GLGMTAVVDED------------GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNP 69 (114)
T ss_pred cccccCCCCcHHHHHHHHHhc-CccEEEEEcCC------------CCEEEEechHHHHHHHhccCccccCCHHHhhccCC
Confidence 456689999999999999876 67899999877 789999998887643221 222357999999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.++.+++++.++++.|. ......+||+++ +..+|.++..++
T Consensus 70 ~~v~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~iG~it~~di 111 (114)
T cd04604 70 KTIDPDALAAEALELME-ENKITALPVVDDNGRPVGVLHIHDL 111 (114)
T ss_pred eEECCCCcHHHHHHHHH-HcCCCEEEEECCCCCEEEEEEHHHh
Confidence 99999999999999995 466667888874 555776666553
No 95
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.43 E-value=4.7e-07 Score=82.07 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=83.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-----------cccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-----------GIYNVY 498 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-----------~~~~~~ 498 (704)
++.+++++++++++.+.+.++ +.+.+||+|++ ++++|+++..|+...... .....+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~-~~~~~~V~d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04584 2 DVVTITPTTTIAEALELMREH-KIRHLPVVDEE------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP 68 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHc-CCCcccEECCC------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC
Confidence 467789999999999999877 78899999987 789999999988643210 233467
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHH
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKR 548 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~ 548 (704)
+.++|.++++++.+++++.++++.|. ..+...+||++++..+|.++..+
T Consensus 69 v~~~~~~~~~~i~~~~~l~~~~~~~~-~~~~~~~~V~~~~~~~Gvv~~~d 117 (121)
T cd04584 69 VKEIMTKDVITVHPLDTVEEAALLMR-EHRIGCLPVVEDGRLVGIITETD 117 (121)
T ss_pred HHHHhhCCCeEECCCCcHHHHHHHHH-HcCCCeEEEeeCCEEEEEEEHHH
Confidence 89999999999999999999999995 45566778877666677666654
No 96
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.42 E-value=4.9e-07 Score=82.81 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=82.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-----------cccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI-----------YNVY 498 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~-----------~~~~ 498 (704)
++.++.+++++.++++.+.+. +...+||+|++ .++++|+|+..|++....... ....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~-~~~~~~V~d~~-----------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 69 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSG-GIHRVAVTEEE-----------SGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLR 69 (123)
T ss_pred CceecCCCCCHHHHHHHHhhC-CcceEEEEeCC-----------CCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhh
Confidence 467789999999999999876 68899999863 157999999999864311110 1122
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
+.++|.+++.++.+++++.++++.|. ..+.+.+||+++ ++.+|.++..+++
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMH-NEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHH-HcCCceEEEECCCCcEEEEEeHHHhh
Confidence 34678999999999999999999995 477778999976 5567888777654
No 97
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.42 E-value=1e-06 Score=78.33 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=79.9
Q ss_pred EEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceEEe
Q psy6631 432 KYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIW 511 (704)
Q Consensus 432 ~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~tV~ 511 (704)
.++.++++++++++.+.+. +...+||+|+ ++++|+++..|+.... ..++.++|.++..++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~-~~~~~~V~d~-------------~~~~G~v~~~~l~~~~-----~~~~~~~~~~~~~~v~ 64 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIEN-DLLSLPVVDY-------------NKFLGAVYLKDIENAT-----YGDVVDYIVRGIPYVR 64 (104)
T ss_pred eEECCCCCHHHHHHHHHHc-CCcEEEEEEC-------------CEEEEEEEHHHHhhhc-----ccchhhhhhcCCcEEc
Confidence 4578999999999999887 7889999974 4799999998886432 2357889999999999
Q ss_pred CCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 512 NNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 512 ~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+++++.|+++.|. ..+.+.+||+++++.+|.++..+.
T Consensus 65 ~~~~l~~a~~~~~-~~~~~~~~Vv~~~~~iGvit~~dl 101 (104)
T cd04594 65 LTSTAEEAWEVMM-KNKTRWCPVVDDGKFKGIVTLDSI 101 (104)
T ss_pred CCCCHHHHHHHHH-HcCcceEEEEECCEEEEEEEHHHh
Confidence 9999999999995 466677888887666777776653
No 98
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.40 E-value=7.2e-07 Score=80.33 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=80.1
Q ss_pred ceEEecCCCCHHHHHHHHHhcCC-ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc--cccccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRS-LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS--GIYNVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~-~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~--~~~~~~V~dvM~~~ 506 (704)
++..++++++++++.+.+.++ + ...+||+| + ++++|+++..|++..... .....++.++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~-~------------~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~ 67 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQ-GDSSCVLVVE-K------------GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQP 67 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhc-CCCceEEEcC-C------------CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCC
Confidence 456789999999999999876 5 56677776 4 589999999998743222 12346789999999
Q ss_pred ceEEeCC--CCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 507 VKYIWNN--MTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 507 v~tV~~d--~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++++.++ +++.++++.|. ..+...+||+++ +..+|.+++.+.
T Consensus 68 ~~~v~~~~~~~l~~a~~~~~-~~~~~~~pVvd~~~~~~Gvit~~dl 112 (115)
T cd04620 68 VVTLQESEIQDIFTALSLFR-QHQIRHLPVLDDQGQLIGLVTAESI 112 (115)
T ss_pred cEEEecccccCHHHHHHHHH-HhCCceEEEEcCCCCEEEEEEhHHh
Confidence 9999998 78999999995 466677888875 455676666553
No 99
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.39 E-value=8.4e-08 Score=111.16 Aligned_cols=183 Identities=12% Similarity=0.097 Sum_probs=109.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc------
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI------ 494 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~------ 494 (704)
.+|+|+|.+++.+++++++++++++.|.++ +.+.+||+|++ ++++|+|+..|+.....+.+
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~-~~~~lpVvd~~------------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDEN-NVKTLPVVDEE------------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHc-CCCEEEEEcCC------------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999999999999999999999999988 78999999977 79999999999863211100
Q ss_pred -cccc-----------------------------------cccccccC-ceEEeCCCCHHHHHHHhHhcCCCceeecccC
Q psy6631 495 -YNVY-----------------------------------VEDFMVRD-VKYIWNNMTYRDLKNLLKENRSLRVFPLVES 537 (704)
Q Consensus 495 -~~~~-----------------------------------V~dvM~~~-v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~ 537 (704)
...+ +.+.|.++ ++.+....+ ....+. .....++.+.+.
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai-~~~~~~lIlt~g 210 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAI-EAGVRLLIITGG 210 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHH-HcCCCEEEECCC
Confidence 0011 11123322 222211111 111111 233444444333
Q ss_pred CCceEEeehHHHhhhcCCCcccccccCc-hhhcCCCCCCCCCCCCCCCCCCCCCCccc--CccccCCCchhhhccccccc
Q psy6631 538 SGKFEQMEIKRREERQRRPSRFEVTPAP-DLLRGNPHGVSASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSL 614 (704)
Q Consensus 538 ~~~~~~i~~~~~~~~~~~~sr~~v~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~ 614 (704)
... ++. ...+.+ .+...++..+ |..+. ....+ ...+..++|+ .+.++.|++++.++.+.|..
T Consensus 211 ~~~----~~~-v~~la~-~~~i~ii~t~~dt~~t------~~~l~---~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~ 275 (546)
T PRK14869 211 APV----SED-VLELAK-ENGVTVISTPYDTFTT------ARLIN---QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLK 275 (546)
T ss_pred CCC----CHH-HHHHHH-hCCCeEEEecccHHHH------HHHhh---cCCCHHHhccCCCcEEECCCCcHHHHHHHHHh
Confidence 111 111 011111 1122233222 11111 00000 1124667786 57888999999999999988
Q ss_pred ccCCCCcCcccCCCCCcchHHHH
Q psy6631 615 KNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 615 ~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.++..+ ||||++|+++|++++
T Consensus 276 ~~~~~~--PVvd~~g~lvGiit~ 296 (546)
T PRK14869 276 SRYRSY--PVVDEDGKVVGVISR 296 (546)
T ss_pred cCCCce--EEEcCCCCEEEEEEH
Confidence 888877 999999999999998
No 100
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.39 E-value=8.1e-07 Score=79.35 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=81.8
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
++.++.++++++++.+.|.+. +...+||++++ .++++|+++..|+...........++.++|. ++++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~-~~~~~~v~~~~-----------~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 68 (111)
T cd04590 2 DIVALDADDTLEEILELIAES-GHSRFPVYDGD-----------LDNIIGVVHVKDLLRALAEGEEDLDLRDLLR-PPLF 68 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhC-CCceEEEECCC-----------CceEEEEEEHHHHHHHHHcCCCcCCHHHHhc-CCee
Confidence 577899999999999999877 67899999753 1589999999998754332222245677664 6899
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
+.+++++.++.+.|. ..+.+.+||+++ ++.+|.++..+.
T Consensus 69 v~~~~~l~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~di 108 (111)
T cd04590 69 VPESTPLDDLLEEMR-KERSHMAIVVDEYGGTAGLVTLEDI 108 (111)
T ss_pred cCCCCcHHHHHHHHH-hcCCcEEEEEECCCCEEEEeEHHHh
Confidence 999999999999995 567788998876 556776666553
No 101
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.36 E-value=1.3e-06 Score=79.30 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=81.9
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------------ccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------------GIYNV 497 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------------~~~~~ 497 (704)
++..+.+++++.++.+.+.++ +...+||+|+ ++++|+++..|+...... .....
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~-~~~~i~V~~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDH-DISRLPVIEG-------------GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNL 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHc-CCCeeEEEEC-------------CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhcc
Confidence 567889999999999999887 7889999984 489999999998643221 11345
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
++.++|.+++.++.+++++.++.+.|.+ .+...+||+++++.+|.++..++
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~~~~Gvi~~~dl 118 (121)
T cd04633 68 PVSDIMTRPVITIEPDTSVSDVASLMLE-NNIGGLPVVDDGKLVGIVTRTDI 118 (121)
T ss_pred CHHHHccCCceEECCCCcHHHHHHHHHH-cCCCcccEEECCEEEEEEEHHHh
Confidence 7889999999999999999999999954 44455677666666776666653
No 102
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.35 E-value=2.1e-07 Score=94.74 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=95.3
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
.+..+|+++|++++.++.+|+++.|+++.|. .+++.-.||+|+++.+|.++-.+...... .
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~-~~~i~GaPVvd~dk~vGiit~~dI~~aia------------~------ 229 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFY-EKGIRGAPVVDDDKIVGIITLSDIAKAIA------------N------ 229 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHH-HcCccCCceecCCceEEEEEHHHHHHHHH------------c------
Confidence 4567899999999999999999999999995 57888899999888888777776543321 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.++-. ...++|. .+++...++.|+.|..+|+..+..++ -|+|+.|+++|++||
T Consensus 230 ------g~~~~---kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRL--lV~ds~gkpvGiITr 283 (294)
T COG2524 230 ------GNLDA---KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRL--LVTDSNGKPVGIITR 283 (294)
T ss_pred ------CCccc---cHHHHhccCCceEcCchhHHHHHHHHHhcCcceE--EEEccCCcEEEEEeh
Confidence 11111 4678888 89999999999999999999999998 789999999999999
No 103
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.34 E-value=2.1e-05 Score=88.20 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHhhhcc---hhHHHHHHHHHHHHHHhhh-hhccccCCCCC
Q psy6631 165 ELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRN---KKMNAFLQKN---RFLYPGIVVLLATSVSFPL-GLGKYMAGDLN 237 (704)
Q Consensus 165 el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~---~~~~~~l~~~---~~l~p~l~gllvg~l~fP~-~~G~~~~g~l~ 237 (704)
.+...+++|+++|+.+.+|.+.+.+...+.-.. .........+ +++-|+++|++++.+.+-. ..+.-... .
T Consensus 4 ~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~--g 81 (418)
T PRK01610 4 RLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPH--A 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCC--C
Confidence 456678999999999999999987765422110 0000001122 3455667788887664321 11110000 0
Q ss_pred cHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHH
Q psy6631 238 THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG 317 (704)
Q Consensus 238 ~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G 317 (704)
..+.++ ...+. +...+. ....|++.+.++.++|.+.|-=-|+.-+||++|..++
T Consensus 82 ~~~vi~-av~~~---------------------g~~~~~----~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~ 135 (418)
T PRK01610 82 PTDYME-ALQTD---------------------GQFDYA----ASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFA 135 (418)
T ss_pred cHHHHH-HHHcC---------------------CCCCcc----HHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH
Confidence 122222 21110 111111 2468999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH-hCC--chhHHHHHHHHHHHHHHHhhc
Q psy6631 318 EIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM-TGQ--ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El-TG~--~~~~lPimia~~is~~va~~l 391 (704)
..+. +. .+--.+..+|+||=++++-+ |++.++..+|. .++ +..+.|+++++++++.+++.+
T Consensus 136 ~~~~---~~----------~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~ 200 (418)
T PRK01610 136 QRFT---PR----------QEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL 200 (418)
T ss_pred HHhC---Ch----------HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 11 23456889999998888888 89999999997 444 456889999999999999876
No 104
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1.6e-06 Score=77.58 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=78.1
Q ss_pred ecCCCCHHHHHHHHHhcCC-----ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 434 IWNNMTYRDLKNLLKENRS-----LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 434 v~~~~tl~ea~~~l~~~~~-----~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+.++++++++++.+.++ + ...+||+|++ ++++|+++.+|++... .+.++.++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvd~~------------~~~~G~v~~~~l~~~~----~~~~v~~~~~~~~~ 64 (109)
T cd04606 2 VREDWTVGEALEYLRRN-ADDPETIYYIYVVDEE------------GRLLGVVSLRDLLLAD----PDTPVSDIMDTDVI 64 (109)
T ss_pred ccccCcHHHHHHHHHhc-cCcccceeEEEEECCC------------CCEEEEEEHHHHhcCC----CcchHHHHhCCCCe
Confidence 57899999999999876 4 3679999876 7899999998887532 24578999999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.+.+++++.++++.|. ..+...+||+++ ++.+|.++..++
T Consensus 65 ~i~~~~~~~~~~~~~~-~~~~~~~~Vv~~~~~~~Gvit~~dl 105 (109)
T cd04606 65 SVSADDDQEEVARLFE-KYDLLALPVVDEEGRLVGIITVDDV 105 (109)
T ss_pred EEcCCCCHHHHHHHHH-HcCCceeeeECCCCcEEEEEEhHHh
Confidence 9999999999999995 455667888874 555676666554
No 105
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.33 E-value=2e-06 Score=76.88 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=80.0
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Cccccc-ccccccccccC
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIY-NVYVEDFMVRD 506 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~-~~~V~dvM~~~ 506 (704)
++.++.++++++++.+.+.++ +.+.+||+++ ++++|+|+..|++.. ...... ..++.++|.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~-------------~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~ 67 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREK-RVSCVLVMDG-------------NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPN 67 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHc-CCCeEEEEEC-------------CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC
Confidence 467789999999999999877 6788999974 479999999998631 111112 25789999999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
+.++.+++++.++++.|.+ .+...+||+++ ++.+|.++..+
T Consensus 68 ~~~v~~~~~l~~~~~~~~~-~~~~~l~Vv~~~~~~~Gvvs~~d 109 (113)
T cd04587 68 PVCATSDTPVLEALHLMVQ-GKFRHLPVVDKSGQVVGLLDVTK 109 (113)
T ss_pred CeEEcCCCCHHHHHHHHHH-cCCCcccEECCCCCEEEEEEHHH
Confidence 9999999999999999954 55556677765 55567666554
No 106
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.31 E-value=4.2e-06 Score=93.82 Aligned_cols=190 Identities=16% Similarity=0.129 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH--hhhc-chhHHHHHHHHHHHHH---HhhhhhccccCCCCCcHHHHHHh
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNK-KMNA--FLQK-NRFLYPGIVVLLATSV---SFPLGLGKYMAGDLNTHDQLSSL 245 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~-~~~~--~l~~-~~~l~p~l~gllvg~l---~fP~~~G~~~~g~l~~~~~i~~l 245 (704)
|++.|+++.+|.+...+...++...- +.+. +... -+.+.+++.+++.+.+ ..|...|.+ .+++...
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsG-------Ip~v~~~ 73 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSG-------IPEVMAY 73 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-------HHHHHHH
Confidence 56778888888888777665433110 0000 0001 1234445554444433 246555543 3445544
Q ss_pred hhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcC
Q psy6631 246 FSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP 325 (704)
Q Consensus 246 f~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p 325 (704)
.++.. .++...+ --++.|++.+.++.|+|.+.|--.|+.-+||++|..++.....+.-
T Consensus 74 l~g~~------------------~~~~l~~----~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~ 131 (416)
T cd01036 74 LNGVH------------------LPMYLSI----RTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLG 131 (416)
T ss_pred HcCCc------------------ccccccH----HHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccc
Confidence 43210 0011111 2356899999999999999999999999999999999997643210
Q ss_pred CCccCCC-ccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCCc---hhHHHHHHHHHHHHHHHhhc
Q psy6631 326 DGITHGK-FIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQI---THIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 326 ~~~~~~~-~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~~---~~~lPimia~~is~~va~~l 391 (704)
-...... ..+..+--.+...|+||-++++-+ |++.++..+|.+..+ ..+.|.+++++++..+++.+
T Consensus 132 ~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 132 CHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred cccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 000124456888999999998888 899999999987542 46789999999999998765
No 107
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.30 E-value=1e-06 Score=98.39 Aligned_cols=124 Identities=8% Similarity=0.025 Sum_probs=107.5
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCC--Cccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLP--SSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~--~~~~~~ 495 (704)
...-+|.++|+.+++++++..++.++.+.|.+. +.+..-|++++ +.++|+|+++|+... .+....
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~-gv~s~v~l~~~------------~~~~GIvT~~dl~~~v~~~g~~~ 212 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDE-GVSSLVVLDDS------------GPLLGIVTRKDLRSRVIADGRSK 212 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhc-CCCeEEEEcCC------------CCccceeehHHHHHHHHhcCCCc
Confidence 345679999999999999999999999999998 78888888876 789999999999743 445567
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRR 555 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~ 555 (704)
..+|.++|+.++.+|.+.+-+.||.-.|. .+|+.-+||.++++.+|.++..|+..+-..
T Consensus 213 ~~~V~evmT~p~~svd~~~~~feAml~m~-r~~I~hl~V~e~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 213 TQKVSEVMTSPVISVDRGDFLFEAMLMML-RNRIKHLPVTEDGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ccchhhhhccCceeecCcchHHHHHHHHH-HhCCceeeeecCCeeeEEeeHHHHHHhhCC
Confidence 78999999999999999999999999995 588999999999999998888887655543
No 108
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.30 E-value=3.7e-06 Score=74.44 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=80.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
+++.+++.+.+++++.+.+.+. +...+||+|+ ++++|+++..|++... ....+.++|.+++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~v~d~-------------~~~~g~v~~~~l~~~~----~~~~~~~~~~~~~~ 63 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKET-GHDGFPVVDN-------------GKVVGIVSARDLLGKD----PDETVEEIMSKDLV 63 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHc-CCCeeeEeEC-------------CEEEEEEEHHHhhccC----ccccHHHhCCCCCe
Confidence 5677899999999999999876 6778999974 4899999999987532 23468899999999
Q ss_pred EEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 509 YIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
++.+++++.++++.|.+ .+...+||+++ +..+|.++..+
T Consensus 64 ~v~~~~~l~~~~~~~~~-~~~~~~~Vv~~~g~~~Gvi~~~d 103 (107)
T cd04610 64 VAVPEMDIMDAARVMFR-TGISKLPVVDENNNLVGIITNTD 103 (107)
T ss_pred EECCCCCHHHHHHHHHH-hCCCeEeEECCCCeEEEEEEHHH
Confidence 99999999999999954 44556777765 45567665554
No 109
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=1.5e-06 Score=79.18 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------------ccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------------GIYNV 497 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------------~~~~~ 497 (704)
++.++.++++++++.+.+.++ +...+||+|+ ++++|+++..|+...... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~d~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKH-KFHHLLVVED-------------NELVGVISDRDYLKAISPFLGTAGETEKDLATLNR 67 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhC-CCCEEEEEeC-------------CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 467789999999999999887 7889999985 479999999998642110 01235
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
++.++|.++++.+.+++++.++++.|.+ .+...+|++++ +..+|.++..+.
T Consensus 68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~vv~~~~~~~Gvit~~dl 119 (122)
T cd04637 68 RAHQIMTRDPITVSPDTPVDEASKLLLE-NSISCLPVVDENGQLIGIITWKDL 119 (122)
T ss_pred HHHHhhcCCCeeeCCCCcHHHHHHHHHH-cCCCeEeEECCCCCEEEEEEHHHh
Confidence 7899999999999999999999999954 55567788765 566777766654
No 110
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.28 E-value=2e-06 Score=75.62 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=82.3
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc--cccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI--YNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~--~~~~V~dvM~~~v 507 (704)
++.++.++++++++.+.+.++ +...+||++++ ++++|+++..|+........ ....+.++|.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEH-GISGLPVVDDD------------GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDV 68 (113)
T ss_pred CceEecCCCCHHHHHHHHHhc-CCceEEEECCC------------CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCc
Confidence 466789999999999999887 68899999876 78999999999875433221 1122678999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKR 548 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~ 548 (704)
..+.+++++.++.+.|. ..+...++++++ +..+|.++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~G~i~~~d 109 (113)
T cd02205 69 VTVSPDTSLEEAAELML-EHGIRRLPVVDDEGRLVGIVTRSD 109 (113)
T ss_pred eecCCCcCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEEEHHH
Confidence 99999999999999995 455677888876 55566666554
No 111
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=1.8e-06 Score=81.77 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=81.6
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccc---------------
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSG--------------- 493 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~--------------- 493 (704)
+++.++.+++++.++.+.+.++ +...+||+|+ ++++|+++..|++......
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vvd~-------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 1 KNPITCNADDTISDAARLLREN-KISGAPVLDG-------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHc-CCCcceEeEC-------------CeEEEEecHHHHHHHHHhccCccccccCCcceee
Confidence 3567899999999999999987 7899999974 4799999998876321110
Q ss_pred -------------------ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 494 -------------------IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 494 -------------------~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
....++.++|.++++++.+++++.++.+.|.+ .+...+||++++..+|.++..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~-~~~~~~~Vv~~~~~~Gvvt~~dl 140 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVR-HKIKRLPVVEDGRLVGIVTRGDI 140 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHh
Confidence 12456889999999999999999999999954 45556777766555676666553
No 112
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.22 E-value=3.6e-06 Score=74.66 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=78.7
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc--cccccccccccCc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI--YNVYVEDFMVRDV 507 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~--~~~~V~dvM~~~v 507 (704)
+..++.++++++++.+.+.++ +...+||+|++ +++|+++..|+........ ...++.++|.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~V~~~~-------------~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 67 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREY-GVSQLPVVDDG-------------RVVGSIDESDLLDALIEGKAKFSLPVREVMGEPL 67 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHc-CCceeeEeeCC-------------eeEEEEeHHHHHHHHhccccccCcCHHHHhcCCC
Confidence 456789999999999999987 78899999754 7999999999875432221 2467899999999
Q ss_pred eEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHH
Q psy6631 508 KYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRR 549 (704)
Q Consensus 508 ~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~ 549 (704)
.++++++++.++.+.|.+ . .. +++++ +++.+|.++..+.
T Consensus 68 ~~v~~~~~l~~~~~~~~~-~-~~-~~vv~~~~~~~Gvvt~~di 107 (110)
T cd04609 68 PTVDPDAPIEELSELLDR-G-NV-AVVVDEGGKFVGIITRADL 107 (110)
T ss_pred ceeCCCCcHHHHHHHHHh-C-Cc-eeEEecCCeEEEEEeHHHh
Confidence 999999999999999965 2 23 45554 3555676666653
No 113
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=5.5e-06 Score=73.49 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=80.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCceE
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKY 509 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~t 509 (704)
+..++.++++++++.+.+.+. ++..+||++++ ++++|+++..+++.... ...+.++|.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~g~v~~~~l~~~~~----~~~~~~~~~~~~~~ 64 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEY-KVSGVPVVKKS------------GELVGIITRKDLLRNPE----EEQLALLMTRDPPT 64 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHc-CCCeEEEEcCC------------CcEEEEEEHHHHHhccc----cchHHHHhcCCCce
Confidence 456788999999999999877 67899999876 78999999888864321 23578889999999
Q ss_pred EeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHH
Q psy6631 510 IWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549 (704)
Q Consensus 510 V~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~ 549 (704)
+.+++++.++.+.|.+ .+...+||+++++.+|.++..+.
T Consensus 65 v~~~~~l~~~~~~~~~-~~~~~~~Vvd~~~~~G~it~~d~ 103 (106)
T cd04638 65 VSPDDDVKEAAKLMVE-NNIRRVPVVDDGKLVGIVTVADI 103 (106)
T ss_pred ECCCCCHHHHHHHHHH-cCCCEEEEEECCEEEEEEEHHHh
Confidence 9999999999999954 55556777766555676665543
No 114
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.21 E-value=5.1e-07 Score=97.47 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=89.3
Q ss_pred ccccccccccC--ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~~~--v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
..+|+|+|+++ ++++++++++.|+++.|. ......+||+|+ ++.+|.++..++.........
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~-~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-------------- 260 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELS-RTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-------------- 260 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHH-HcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC--------------
Confidence 57899999998 999999999999999994 455668888875 567888887775432210000
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH---HHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR---IRMA 641 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr---~r~a 641 (704)
. +.+..++|. ++..+.|++++.++.+.|...+...+ ||||++|+++|+|++ +|++
T Consensus 261 ----~--------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~lvGvIt~~di~~~~ 319 (321)
T PRK11543 261 ----L--------TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAA--PVVDENGKLTGAINLQDFYQAG 319 (321)
T ss_pred ----c--------CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEHHHHHhcc
Confidence 0 002335555 66678999999999999999999887 999999999999998 5554
No 115
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=98.21 E-value=3.8e-05 Score=85.44 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhhh---cchhHHHHHHHHHHHHHHh-hhhhccccCCCCCcHHHHHHh
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNK---KMNAFLQ---KNRFLYPGIVVLLATSVSF-PLGLGKYMAGDLNTHDQLSSL 245 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~---~~~~~l~---~~~~l~p~l~gllvg~l~f-P~~~G~~~~g~l~~~~~i~~l 245 (704)
|+++|+.+.+|.+..++...++.... +...... ..+++-|.+++++++++.+ +...|.+ -.++.+.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~g~g-------i~~v~~~ 73 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLRRKGKK-------LVSIKQA 73 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHhccCCC-------cccHHHH
Confidence 68899999999999988776543211 0001111 1345556777888776643 2223332 1223222
Q ss_pred hhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcC
Q psy6631 246 FSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP 325 (704)
Q Consensus 246 f~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p 325 (704)
.++. ..... .-.+.|++.+.+|.|+|.+.|-=-|+.-+||++|..++..++. +
T Consensus 74 ~~~~---------------------~~~~~----~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~--~ 126 (388)
T cd01033 74 VRGK---------------------KRMPF----WETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL--T 126 (388)
T ss_pred hcCC---------------------CCCCH----HHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC--C
Confidence 2211 00111 1234699999999999999999999999999999999887532 1
Q ss_pred CCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHhhc
Q psy6631 326 DGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTG---QITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 326 ~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG---~~~~~lPimia~~is~~va~~l 391 (704)
..+--....+|++|=++++-+ |++.++..+|... .+..+.|+++++++|+.+++.+
T Consensus 127 ----------~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 186 (388)
T cd01033 127 ----------VADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL 186 (388)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 123446788899998888888 8999999999864 3556889999999999999865
No 116
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.18 E-value=8.8e-07 Score=70.31 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred cccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 423 V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
|+|+|++++.++++++++.++.+.|.++ +.+.+||+|++ ++++|+|+.+|++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~d~~------------~~~~G~is~~dl~ 52 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKN-GISRLPVVDED------------GKLVGIISRSDLL 52 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHH-TSSEEEEESTT------------SBEEEEEEHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHc-CCcEEEEEecC------------CEEEEEEEHHHHH
Confidence 6899999999999999999999999999 89999999887 8999999988874
No 117
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.18 E-value=4.4e-06 Score=93.62 Aligned_cols=116 Identities=13% Similarity=0.161 Sum_probs=96.6
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCC----ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRS----LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~----~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+++.+|+.+.+.+++++|++++++.+++..+ ...+.|||.+ ++++|+++.++++... .+.
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~------------~~L~Gvvsl~~Ll~a~----~~~ 196 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK------------GKLLGVVSLRDLLTAE----PDE 196 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc------------cceEEEeeHHHHhcCC----cHh
Confidence 5999999999999999999999999996422 3468899988 7999999999997654 366
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQR 554 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~ 554 (704)
+++++|.+++..|.++++.+|+++.+. ...+..+||+|+ ++.+|.++..+.....+
T Consensus 197 ~i~~im~~~~~~V~~~~dqeevA~~~~-~ydl~a~PVVd~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 197 LLKDLMEDDVVSVLADDDQEEVARLFE-KYDLLAVPVVDEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred HHHHHhcccceeecccCCHHHHHHHHH-HhCCeecceECCCCceeeeeeHHHHHHHHH
Confidence 899999999999999999999999995 455669999987 56688777766544443
No 118
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=5.7e-06 Score=74.79 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=79.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCC-ccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc-----cccccccccc
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRS-LRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS-----GIYNVYVEDF 502 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~-~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~-----~~~~~~V~dv 502 (704)
+++.++.++++++++.+.+.+. + +..+||+|+ ++++|+++..|+...... ...+.++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vvd~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~ 66 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERD-PDLSALAVVDD-------------GRPVGLIMREALMELLSTPYGRALYGKKPVSEV 66 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhC-CCccEEEEEEC-------------CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHh
Confidence 3566789999999999999876 5 789999985 379999999888632111 1234679999
Q ss_pred cccCceEEeCCCCHHHHHHHhHhcC--CCceeecc-cCCCceEEeehHHH
Q psy6631 503 MVRDVKYIWNNMTYRDLKNLLKENR--SLRVFPLV-ESSGKFEQMEIKRR 549 (704)
Q Consensus 503 M~~~v~tV~~d~sl~ea~~~m~~~~--rl~Vvpvv-~~~~~~~~i~~~~~ 549 (704)
|.+++.++.+++++.++.+.|.+.+ ++...+++ ++++.+|.++..+.
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di 116 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDL 116 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHH
Confidence 9999999999999999999996532 22333444 44556776666553
No 119
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.05 E-value=2.1e-06 Score=93.06 Aligned_cols=114 Identities=8% Similarity=0.004 Sum_probs=86.8
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeeccc-CCCceEEeehHHHhhhcCCCcccccccCchhhcCC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~-~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~ 571 (704)
...+|+|+|++ +++++.+++++.|+++.|.+ .+...++|++ +++.+|.+++.+........
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~-~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~--------------- 263 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITR-KNLGMTVICDDNMKIEGIFTDGDLRRVFDMG--------------- 263 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHh-cCCCeEEEEcCCCcEEEEEecHHHHHHHhcC---------------
Confidence 45679999997 89999999999999999954 4456777766 46778888888764321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+ ..+..++|+ ++.++.|++++.++...|...+..++ ||++ .|+++|+++|
T Consensus 264 --------~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVv~-~~~lvGiit~ 317 (326)
T PRK10892 264 --------IDLR--QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSV--LVAD-GDHLLGVLHM 317 (326)
T ss_pred --------CCcc--cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEE--EEee-CCEEEEEEEh
Confidence 0000 013556777 78889999999999999999999887 9997 5899999998
No 120
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.01 E-value=0.00012 Score=82.98 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcchhHHHHHHHHHHHHHH---hhhhhccccCCCCCcHHHHHHhhhcC
Q psy6631 173 GVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSVS---FPLGLGKYMAGDLNTHDQLSSLFSNF 249 (704)
Q Consensus 173 Gi~~Gl~g~lF~~~~~~~~~~~r~~~~~~~~l~~~~~l~p~l~gllvg~l~---fP~~~G~~~~g~l~~~~~i~~lf~~~ 249 (704)
|++.|+++.++.+...|....+... . .+ .-+.+.+++++++++.+. .|..-|.+ -.++....++.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsG-------Ip~v~~~l~g~ 68 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGY--C-NY--IIYVLLALLFAFIAVLLVKVVAPYAAGSG-------IPEIKTILSGF 68 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhH--H-HH--HHHHHHHHHHHHHHHHHHHhcCccccCCC-------HHHHHHHHcCc
Confidence 6888999999988887765443311 0 00 012233344555555442 35555543 45555444431
Q ss_pred ccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCcc
Q psy6631 250 TWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGIT 329 (704)
Q Consensus 250 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~ 329 (704)
. . ++...+. -.+.|++.+.++.++|.+-|-=-|+.-+||++|..++.++..+-.+
T Consensus 69 ~------~------------~~~~~~~----~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~--- 123 (445)
T cd03684 69 I------I------------RGFLGKW----TLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRN--- 123 (445)
T ss_pred c------c------------cccccHH----HHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccC---
Confidence 0 0 0111122 2568999999999999999999999999999999999876532111
Q ss_pred CCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHh-CC--chhHHHHHHHHHHHHHHHhhc
Q psy6631 330 HGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMT-GQ--ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 330 ~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElT-G~--~~~~lPimia~~is~~va~~l 391 (704)
..+--....+|+||=++++-+ |+..++..+|.. .. ...++|.++++++|+.+++.+
T Consensus 124 ------~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 124 ------EAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred ------HHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 123345678899998888887 899999999854 43 346789999999999988865
No 121
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=97.95 E-value=6.4e-05 Score=84.64 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH--hhh-cchhHHHHHHHHHHHHHH---hhhhhccccCCCCCcH
Q psy6631 167 TVFALIGVVCGFGGAGYVWSHRQYVLFMRRNK-KMNA--FLQ-KNRFLYPGIVVLLATSVS---FPLGLGKYMAGDLNTH 239 (704)
Q Consensus 167 ~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~-~~~~--~l~-~~~~l~p~l~gllvg~l~---fP~~~G~~~~g~l~~~ 239 (704)
...+++|++.|+++.+|....++...++...- .... +.. ..+.+.|++++++.+.+. .|..-|.+ -
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsG-------I 75 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSG-------I 75 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC-------H
Confidence 45679999999999999998887765443210 0000 000 112344555555555442 35555543 3
Q ss_pred HHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHH
Q psy6631 240 DQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEI 319 (704)
Q Consensus 240 ~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~ 319 (704)
.++....++.. .++...+ --+..|++.+.++.|+|.+-|-=-|+.-+||++|..++..
T Consensus 76 p~v~~~l~g~~------------------~~~~l~~----r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~ 133 (426)
T cd03683 76 PEMKTILRGVV------------------LPEYLTF----KTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKL 133 (426)
T ss_pred HHHHHHHcCCC------------------ccccccH----HHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh
Confidence 44544443210 0011112 2256899999999999999999999999999999999987
Q ss_pred HHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhCC---chhHHHHHHHHHHHHHHHhhc
Q psy6631 320 IFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEMTGQ---ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~ElTG~---~~~~lPimia~~is~~va~~l 391 (704)
.....-.. .+...--.....|+||=++++-+ |+..++..+|.... ...+.|.+++++++..+++.+
T Consensus 134 ~~~~~~~~------~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~ 203 (426)
T cd03683 134 TTFFSGIY------ENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLL 203 (426)
T ss_pred cccccccc------cCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 64210000 00011224778888888888877 89999999997543 346679999999998877653
No 122
>PRK11573 hypothetical protein; Provisional
Probab=97.93 E-value=2.6e-05 Score=87.31 Aligned_cols=125 Identities=13% Similarity=0.028 Sum_probs=95.5
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccc-
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGI- 494 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~- 494 (704)
+.+.+|+|+|++ ++.+++.+++++|+.+.+.++ +++.+||.+++. ..++|+++.+|++.....+.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~-~~SR~PVy~~~~-----------D~IiGiv~~kDll~~~~~~~~ 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHS-PHGRIVLYRDSL-----------DDAISMLRVREAYRLMTEKKE 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhC-CCceEEEEcCCC-----------CceEEEEEHHHHHHHhhccCc
Confidence 346789999985 699999999999999999988 899999997651 47999999999974322111
Q ss_pred -cccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcCCC
Q psy6631 495 -YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQRRP 556 (704)
Q Consensus 495 -~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~~~ 556 (704)
....+.++|+ ++..|.+++++.++++.| +.++.+..-|+|+ ++..|.++-.|+ +.++|.+
T Consensus 252 ~~~~~l~~~~r-~~~~Vpe~~~l~~lL~~~-~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 252 FTKENMLRAAD-EIYFVPEGTPLSTQLVKF-QRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred CCHHHHHhhcc-CCeEeCCCCcHHHHHHHH-HhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 1123345554 578999999999999999 5677777778877 566787777776 4466655
No 123
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00047 Score=78.05 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHH
Q psy6631 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISV 360 (704)
Q Consensus 282 ~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~ 360 (704)
..+|++.+.++.++|.+.|-=-|+.-+||.+|..++..+..- ..+--...+.|+||=+|++.+ |++.
T Consensus 113 ~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~------------~~~~r~Ll~~GaAaGlaaaF~aPlag 180 (443)
T COG0038 113 LPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS------------REDRRILLAAGAAAGLAAAFNAPLAG 180 (443)
T ss_pred HHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345999999999999999999999999999999999987421 124456788899999999988 8999
Q ss_pred HHHHHHHhCC----chhHHHHHHHHHHHHHHHhhcCC
Q psy6631 361 SVIMFEMTGQ----ITHIIPVMIAVLISNAVAALLQP 393 (704)
Q Consensus 361 ~viv~ElTG~----~~~~lPimia~~is~~va~~l~~ 393 (704)
+++++|.-.. +..+.|+++++++|+.+.+.++.
T Consensus 181 vlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~~ 217 (443)
T COG0038 181 ALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFGG 217 (443)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999997543 46789999999999999997753
No 124
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.87 E-value=5.9e-06 Score=93.80 Aligned_cols=110 Identities=11% Similarity=0.016 Sum_probs=87.5
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....++.++|.+++.++.+++++.|+++.|. ..+...+||+|+ ++.+|.++++++.... +
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~-~~~~s~l~VVD~~gklvGIVT~rDL~~~~---------~--------- 146 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLP-KRAHGAVVVVDEEGRPVGVVTEADCAGVD---------R--------- 146 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHH-hcCCceEEEECCCCeEEEEEeHHHHhcCc---------c---------
Confidence 3457889999999999999999999999994 466678888875 4567888777752110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+..++|+ .+.+..|++++.++...|...+...+ ||||++|+++|+||+
T Consensus 147 -------~------~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~L--PVVD~~g~lvGIIT~ 197 (479)
T PRK07807 147 -------F------TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLA--PVVDADGRLVGVLTR 197 (479)
T ss_pred -------C------CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEE--EEEcCCCeEEEEEEH
Confidence 0 02345566 77888999999999999999988887 999999999999998
No 125
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.85 E-value=7.2e-06 Score=93.03 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=88.1
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
....++.++|.+++.++.+++++.|+++.|. ..+...++|+|+++.+|.++++++... . .
T Consensus 85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~-~~~~~~~vVvD~gklvGIVT~rDL~~~---~------~---------- 144 (475)
T TIGR01303 85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIH-KRAHGAAVVILEDRPVGLVTDSDLLGV---D------R---------- 144 (475)
T ss_pred HhhcchhhccccCCeEECCCCCHHHHHHHHH-hcCCeEEEEEECCEEEEEEEHHHhhcC---C------C----------
Confidence 3467788999999999999999999999995 455678888887777888888875210 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. .+..++|+ ++.++.|++++.++...|...+..++ ||||++|+++|+||+
T Consensus 145 ------~------~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~L--PVVD~~g~LvGIIT~ 195 (475)
T TIGR01303 145 ------F------TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVA--PLVDADGTLAGILTR 195 (475)
T ss_pred ------C------CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEH
Confidence 0 02445566 77888999999999999999888887 999999999999998
No 126
>PRK03655 putative ion channel protein; Provisional
Probab=97.83 E-value=0.001 Score=74.73 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHhhhc-ch--hHHHHHHHHHHHHHH--hhhhhccccCCCCC
Q psy6631 164 QELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKK-MNAFLQK-NR--FLYPGIVVLLATSVS--FPLGLGKYMAGDLN 237 (704)
Q Consensus 164 ~el~~~illGi~~Gl~g~lF~~~~~~~~~~~r~~~~-~~~~l~~-~~--~l~p~l~gllvg~l~--fP~~~G~~~~g~l~ 237 (704)
.-+...+++|+++|+++.+|.++..+...++..... ....... ++ ++-+.++|+++|.+. +| +. +| +
T Consensus 11 ~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~---~~--~G--~ 83 (414)
T PRK03655 11 LLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSP---GH--AG--P 83 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcC---CC--CC--C
Confidence 345678999999999999999999887755432110 0000011 11 233556777777653 22 11 11 1
Q ss_pred cHHHHHHhhhcCccCCCCcchhhHhhhhhcccCCcchHHHHHHHHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHH
Q psy6631 238 THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIG 317 (704)
Q Consensus 238 ~~~~i~~lf~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Ll~~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G 317 (704)
+.++. .+.+ + .. . . -....|++.+.++.++|.+-|-=-|+.-+||++|..+|
T Consensus 84 -~~~~~-~~~~-----~-----------~~----~--~----~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~ 135 (414)
T PRK03655 84 -DPATE-PLIG-----A-----------PV----P--P----SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIG 135 (414)
T ss_pred -hHHHH-HHhc-----C-----------CC----C--c----cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 12221 1111 0 00 0 0 23467888999999999999999999999999999999
Q ss_pred HHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHHHHHHHHH-hCCchh------HHHHHHHHHHHHHHHh
Q psy6631 318 EIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISVSVIMFEM-TGQITH------IIPVMIAVLISNAVAA 389 (704)
Q Consensus 318 ~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~~viv~El-TG~~~~------~lPimia~~is~~va~ 389 (704)
..+. +. .+.-...+.|+||=++++-+ |++.++..+|. .+++.. +.|+ ++++++..++.
T Consensus 136 r~~~---~~----------~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~ 201 (414)
T PRK03655 136 ARLL---PR----------VNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTG 201 (414)
T ss_pred HHhc---cC----------CChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 7651 11 12234566788886777777 89999999995 665542 4444 45555777666
Q ss_pred hcC
Q psy6631 390 LLQ 392 (704)
Q Consensus 390 ~l~ 392 (704)
.+.
T Consensus 202 ~~~ 204 (414)
T PRK03655 202 LFF 204 (414)
T ss_pred HhC
Confidence 543
No 127
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.83 E-value=1.5e-05 Score=70.81 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=69.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
.+.++++++++.|+.+.| ..++...+||+++ ++.+|.++..+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~-~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNAL-VENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHH-HHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence 368899999999999999 4566778888875 34566666655322110
Q ss_pred CCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCC-CCcchHHHH
Q psy6631 584 RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY-TTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~-g~l~G~vtr 637 (704)
+.+++|++++.++...|...+..++ ||++++ |+++|++|+
T Consensus 52 ------------~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~~~~giit~ 92 (98)
T cd04618 52 ------------LVSIHPERSLFDAALLLLKNKIHRL--PVIDPSTGTGLYILTS 92 (98)
T ss_pred ------------eEEeCCCCcHHHHHHHHHHCCCCEe--eEEECCCCCceEEeeh
Confidence 3457899999999999999999998 999998 999999987
No 128
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.75 E-value=3.3e-05 Score=70.32 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=76.8
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccc--cccCchhhcCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFE--VTPAPDLLRGNPHGVSASSDN 581 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~--v~~~~~~l~~~~~~~~~~~~~ 581 (704)
+++.++.+++++.|+.+.|. ..+...+||+++ ++.+|.++.+++....... +.+ ..+..+..
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~-~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~-~~~~~~~~~~~~~------------- 65 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLV-ERRVSALPIVDENGKVVDVYSRFDVINLAKEG-AYNNLDLTVGEAL------------- 65 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHH-HcCCCeeeEECCCCeEEEEEeHHHHHHHHhcC-ccccccCCHHHHH-------------
Confidence 35789999999999999994 456677888864 5678888888765432110 000 00000000
Q ss_pred CCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 582 IPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 582 ~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....|. ++..+.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 66 ------~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l--~Vvd~~~~~~Givt~ 114 (120)
T cd04641 66 ------ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRL--VVVDENKRVEGIISL 114 (120)
T ss_pred ------hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEE--EEECCCCCEEEEEEH
Confidence 0112233 56788999999999999999888887 999999999999987
No 129
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.74 E-value=2.3e-05 Score=70.70 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=75.3
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
+.++.+++++.|+.+.|. ..+...++|+++ ++.+|.++..+.......... . + +
T Consensus 3 ~~~v~~~~~l~~a~~~~~-~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~-----------~-------~----~-- 57 (114)
T cd04619 3 LAKIDVNATLQRAAKILG-EPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG-----------P-------G----C-- 57 (114)
T ss_pred eEEECCCCcHHHHHHHHH-hcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC-----------C-------c----c--
Confidence 678999999999999994 466778898865 566787777765432210000 0 0 0
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+++. .+..+.|++++.++++.|...+...+ ||+|++|+++|++++
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~~~Gvi~~ 108 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNI--PVVDENARPLGVLNA 108 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeE--EEECCCCcEEEEEEh
Confidence 002333444 56678999999999999999999887 999999999999987
No 130
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.73 E-value=1.2e-05 Score=76.53 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=77.1
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
..+.+++|++++..++||+++.+++++| +......+||.+++..+|++++.+.......- .+-+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM-~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~--------~e~i~~----- 129 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLM-RDKGISQLPVIEEDKVVGSITENDIVRALLEG--------MESIRS----- 129 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHH-HHcCCccCceeeCCeeeeeecHHHHHHHHhcc--------ccchhh-----
Confidence 3566788999999999999999999999 56777789999998889999988865433110 011111
Q ss_pred CCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.++|. +.-+..|+.++.-+-.+ +++... =.|...|+++|+||+
T Consensus 130 -----------~~vr~vM~e~fP~Vs~~~~l~vI~~L--L~~~~A---VlV~e~G~~vGIITk 176 (187)
T COG3620 130 -----------LRVREVMGEPFPTVSPDESLNVISQL--LEEHPA---VLVVENGKVVGIITK 176 (187)
T ss_pred -----------hhHHHHhcCCCCcCCCCCCHHHHHHH--HhhCCe---EEEEeCCceEEEEeH
Confidence 03455666 44466788877766222 222222 234588999999998
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=2.4e-05 Score=71.28 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=49.6
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+|+|+|.+++.++.+++++.++++.|.++ ++..+||+|++ ++++|+|+..|+.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~-~~~~lpVvd~~------------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEH-NIRTLPVVDDD------------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHc-CCCEEEEECCC------------CeEEEEEEHHHhh
Confidence 789999999999999999999999999987 78999999987 7999999988774
No 132
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.65 E-value=0.00014 Score=81.94 Aligned_cols=123 Identities=14% Similarity=0.117 Sum_probs=92.8
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+.+.+|+++|++ ++.+++.+.+++++.+.+.++ +++.+||.+++ ...++|+++.+|++........
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~-~~SR~PV~~~~-----------~D~iiGiv~~Kdll~~~~~~~~ 270 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILES-GHSRIPVYDGD-----------LDNIIGIVHVKDLLRALLDGQS 270 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhC-CCCeeeEEcCC-----------CCcEEEEEEHHHHHHHHhcCcc
Confidence 456789999985 688999999999999999998 79999999933 2579999999999855332221
Q ss_pred ccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcC
Q psy6631 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQR 554 (704)
Q Consensus 496 ~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~ 554 (704)
.......+. ++..|.+.+++.++++.| +.++.+..-|+|+ +...|.++..|+ +..+|
T Consensus 271 ~~~~~~~~~-~~~~Vpet~~~~~lL~~~-r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 271 DLDLRVLVR-PPLFVPETLSLSDLLEEF-REERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ccchhhccc-CCeEecCCCcHHHHHHHH-HHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 111112222 789999999999999999 5577777778877 566677776665 34555
No 133
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.61 E-value=5.1e-05 Score=69.34 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=76.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHGVSASSDNI 582 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~~~~~~~~~ 582 (704)
++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++.... .......... ...+ .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~-~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~--~~~~------------~ 66 (123)
T cd04627 2 PFIPVPSTASLFQAIEILG-SGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLD--PLYP------------I 66 (123)
T ss_pred CceecCCCCCHHHHHHHHh-hCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchh--hhhh------------h
Confidence 4678999999999999994 455667888876 3557888877754321 1100000000 0000 0
Q ss_pred CCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HH
Q psy6631 583 PRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IR 639 (704)
Q Consensus 583 ~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r 639 (704)
+. ...+.+. ++..+.|++++.++...|...+.+.+ ||+|++|+++|+||+ +|
T Consensus 67 ~~---~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 67 PL---RDLTIGTSDVISINGDQPLIDALHLMHNEGISSV--AVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hh---hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceE--EEECCCCcEEEEEeHHHhh
Confidence 00 1112334 66678999999999999999999887 999999999999988 65
No 134
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.60 E-value=3.1e-05 Score=81.34 Aligned_cols=111 Identities=10% Similarity=0.019 Sum_probs=83.5
Q ss_pred ccccccccccC-ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 496 NVYVEDFMVRD-VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 496 ~~~V~dvM~~~-v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..+|+|+|+++ ++++.+++++.++.+.|. ..+...++|+|+ ++.+|.++..++....... +
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~-~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~-~--------------- 216 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMS-EKRLGSAIVCDENNQLVGVFTDGDLRRALLGG-G--------------- 216 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHh-hcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcC-C---------------
Confidence 36899999999 999999999999999994 456678888875 5668888877754321100 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAE 635 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~v 635 (704)
. + ..+..++|. ++..+.+++++.++...|...+...+ ||+|++|+++|+|
T Consensus 217 ---~-----~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l--pVvd~~g~l~GvI 267 (268)
T TIGR00393 217 ---S-----L--KSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSL--VVVDDHNKVLGVL 267 (268)
T ss_pred ---c-----c--cCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEE--EEECCCCeEEEEE
Confidence 0 0 002334455 56677899999999999999888887 9999999999987
No 135
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.60 E-value=1.7e-05 Score=89.87 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=79.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccc
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVE 500 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~ 500 (704)
.+++++|++++.++.++++++|+.+.|+++ ++..+||||++ ++++|+|+.+|++....++ ..+
T Consensus 195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~-~~~~lpVVD~~------------g~lvGiIt~~Dil~~l~~~----~~e 257 (449)
T TIGR00400 195 EILSSIMRSSVFSIVGVNDQEEVARLIQKY-DFLAVPVVDNE------------GRLVGIVTVDDIIDVIQSE----ATE 257 (449)
T ss_pred CcHHHHhCCCCeeECCCCCHHHHHHHHHHc-CCCEEeEEcCC------------CeEEEEEEHHHHHHHHHhh----hHH
Confidence 369999999999999999999999999988 78999999987 7999999999997544322 237
Q ss_pred cccccCceEEeCCCCHHHHHHHhHhcCCCceeecc
Q psy6631 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 535 (704)
Q Consensus 501 dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv 535 (704)
|+|+....+..+++.+.++...|. .+|.+.+++.
T Consensus 258 d~~~~~gv~~~~~~~l~~~~~~~~-~~R~~wL~v~ 291 (449)
T TIGR00400 258 DFYMIAAVKPLDDSYFDTSILVMA-KNRIIWLLVL 291 (449)
T ss_pred HHHHhcCCCCCcchhhhchHHHHH-HhccchHHHH
Confidence 888877666556788888888884 5888888775
No 136
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.59 E-value=7.1e-05 Score=69.13 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=72.4
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++...... .. .+ +
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~-~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~--------------~~-----~~----~ 57 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILK-EKGFDQLPVVDESGKILGMVTLGNLLSSLSS--------------GK-----VQ----P 57 (124)
T ss_pred CCCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH--------------hc-----cC----C
Confidence 35788999999999999994 456668888875 566787777764322100 00 00 0
Q ss_pred CCCCCCCCccc-CccccCCCchhhhccccccc---------ccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSL---------KNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~---------~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.|++++.+++..+.. ...+++ ||++++|+++|+||+
T Consensus 58 --~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~Givt~ 117 (124)
T cd04608 58 --SDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAA--IGKEKQEKPIGIVTK 117 (124)
T ss_pred --CCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccc--cccccccceEEEEeh
Confidence 014566777 78889999999988774432 133443 899999999999998
No 137
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=97.54 E-value=0.0026 Score=70.94 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhhh-hhHH
Q psy6631 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTH-TISV 360 (704)
Q Consensus 282 ~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~~-~is~ 360 (704)
...|++.+.+|.++|.+-|-=-|+.-+||++|..++..+.... ..+--.....|+||=++++.+ |+..
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~-----------~~~~r~li~~GaaAGlaa~F~aPlaG 148 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWG-----------GLSERGLILAGGAAGLAAAFNTPLAG 148 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCc-----------hHHHHHHHHHHHHHhHHHHhCCcchh
Confidence 5689999999999999999999999999999999998764311 123456888899998888888 8999
Q ss_pred HHHHHHHhCC---chhHHHHHHHHHHHHHHHhhc
Q psy6631 361 SVIMFEMTGQ---ITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 361 ~viv~ElTG~---~~~~lPimia~~is~~va~~l 391 (704)
++..+|.... .....|++++++++.+++..+
T Consensus 149 ~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 149 IVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987653 346778889999988887653
No 138
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=9.3e-05 Score=65.13 Aligned_cols=89 Identities=9% Similarity=0.223 Sum_probs=69.8
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
++++++.+++++.++.+.| ...+...+||+|+ ++.+|.++..++....
T Consensus 1 ~~~~~v~~~~~i~~a~~~~-~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------------------ 49 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIM-ELANVKALPVLDDDGKLSGIITERDLIAKS------------------------------ 49 (96)
T ss_pred CCccEeCCCCcHHHHHHHH-HHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------------------
Confidence 3578899999999999999 4566778898875 4557766655532210
Q ss_pred CCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.++.+.|++++.++...|...+...+ ||+++.|+++|++++
T Consensus 50 -----------~~~~v~~~~~l~~a~~~m~~~~~~~l--pVv~~~~~~~Giit~ 90 (96)
T cd04614 50 -----------EVVTATKRTTVSECAQKMKRNRIEQI--PIINGNDKLIGLLRD 90 (96)
T ss_pred -----------CcEEecCCCCHHHHHHHHHHhCCCee--eEECCCCcEEEEEEH
Confidence 04566889999999999998888877 999999999999987
No 139
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.52 E-value=3.3e-05 Score=88.26 Aligned_cols=109 Identities=8% Similarity=0.043 Sum_probs=84.0
Q ss_pred cccccccc---cCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhc
Q psy6631 497 VYVEDFMV---RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLR 569 (704)
Q Consensus 497 ~~V~dvM~---~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~ 569 (704)
..|+++|. .+.++++|++++.|+++.|. ..+...+||+|+ ++.+|.++++++.... . ..
T Consensus 94 ~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~-~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~---------~---~~- 159 (502)
T PRK07107 94 RRVKNYKAGFVVSDSNLTPDNTLADVLDLKE-KTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR---------M---SL- 159 (502)
T ss_pred HHHHHHhcCCcCCCCEeCCCCcHHHHHHHHH-hcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc---------c---CC-
Confidence 45777776 45679999999999999995 566778899885 4678888888853210 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 570 GNPHGVSASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|+ ++.++.|+.++.++...|...+...+ ||||++++++|+||+
T Consensus 160 ----------------~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~L--PVVD~~g~LvGIIT~ 212 (502)
T PRK07107 160 ----------------DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTL--PIVDKNGNLVYLVFR 212 (502)
T ss_pred ----------------CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEh
Confidence 013445555 56778999999999999999999887 999999999999999
No 140
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.51 E-value=8e-05 Score=66.80 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=82.0
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCC
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASS 579 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~ 579 (704)
.+.|.++++++.++.++.++.+.|. ..+...+|+.+.++.+|.++..+............
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~-~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~------------------- 61 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMS-ENGVSAVPVVDDGKLVGIITERDILRALAAGGKRL------------------- 61 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHH-HcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCcc-------------------
Confidence 3456688999999999999999995 45677888888766778777777544331110000
Q ss_pred CCCCCCCCCCCCccc-CccccCCCchhhhccccccc-ccCCCCcCcccCCCC-CcchHHHH
Q psy6631 580 DNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSL-KNFSPMLTPNVTPYT-TVTGAESR 637 (704)
Q Consensus 580 ~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~-~~~~~~~~Pvv~~~g-~l~G~vtr 637 (704)
.+...+|+ ++.+..|+.++.++...|.. .+..++ ||+++++ +++|++++
T Consensus 62 -------~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~l--pVv~~~~~~lvGivt~ 113 (117)
T COG0517 62 -------LPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRL--PVVDDDGGKLVGIITL 113 (117)
T ss_pred -------ccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeE--EEEECCCCeEEEEEEH
Confidence 02445666 77888899999999999998 588887 9999996 99999986
No 141
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.50 E-value=8.4e-05 Score=66.74 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=70.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.++.+.|...+....+++.++++.+|.++..+........ ... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~--~~~------------------~----- 56 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIG--KDL------------------S----- 56 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcC--CCc------------------c-----
Confidence 467899999999999999543325567777766678888777754322100 000 0
Q ss_pred CCCCCCccc-CccccCCC--chhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPK--KSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~--~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+.|. ++..+.|+ .++.++...|...+...+ ||+|++|+++|++||
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~--pVvd~~~~~~Gvit~ 109 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHL--PVLDDQGQLIGLVTA 109 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceE--EEEcCCCCEEEEEEh
Confidence 001223333 34445555 678888888888887776 999999999999998
No 142
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.48 E-value=8.7e-05 Score=79.40 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=82.3
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+++|++ ++.++.+++++.|+.+.+.. .+...+||+++ +..+|.+..+++........+
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~-~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------------ 131 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIE-SAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------------ 131 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHh-cCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------------
Confidence 34589999997 68999999999999999954 44556777764 356777776665421100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
. ....++|.+++...+.+++.++...|...+.+.+ ||||.||.++|+||+
T Consensus 132 ----------~-----~~l~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a--~VvDe~G~viGiVTl 181 (292)
T PRK15094 132 ----------A-----FSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMA--IVIDEFGGVSGLVTI 181 (292)
T ss_pred ----------c-----CCHHHHcCCCcCcCCCCcHHHHHHHHHhcCCEEE--EEEeCCCCEEEEeEH
Confidence 0 0123445555678889999999999998888766 999999999999998
No 143
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.44 E-value=0.00016 Score=65.69 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=78.0
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.|+.+.|.+ .+...+||+++ ++.+|.++..++.............. .+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~---~~~----------~~~- 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRR-HRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRG---RLR----------GRD- 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHH-cCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhh---hhh----------ccc-
Confidence 568899999999999999954 45556787765 56688888777644322111110000 000 000
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+..++|. .+..+.|++++.++...|...+...+ ||+|++|+++|++++
T Consensus 67 -~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 67 -KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHV--PVVDEDRRLVGIVTQ 118 (124)
T ss_pred -ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCce--eEEcCCCCEEEEEEh
Confidence 0012344454 66778999999999999988888877 999999999999987
No 144
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.42 E-value=0.00018 Score=64.61 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=49.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++++|..++.++.+++++.++++.|.++ +...+||+|++ ++++|+|+..|+++
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~-~~~~lpVvd~~------------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRET-EPPVVAVVDKE------------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHc-CCCeEEEEcCC------------CeEEEEEEhHHhhc
Confidence 358899999999999999999999999998 78999999977 78999999999864
No 145
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.40 E-value=0.00012 Score=66.46 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=73.6
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
++.++.+++++.++.+.|. ..+...++|+++ ++.+|.++..++.... +.. ..+ .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~-~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-~~~--------------------~-- 57 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLF-LEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQ--------------------K-- 57 (118)
T ss_pred CCEEECCCCCHHHHHHHHH-HcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-Ccc--------------------C--
Confidence 4678999999999999994 456678888876 5568878777644322 100 000 0
Q ss_pred CCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCC---CCcchHHHH
Q psy6631 584 RTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY---TTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~---g~l~G~vtr 637 (704)
....++|. .+.++.|++++..+...|...++..+ ||||++ |+++|++|+
T Consensus 58 ---~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--pVvd~~~~~~~l~Gvit~ 112 (118)
T cd04617 58 ---VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSL--PVVEKVDEGLEVIGRITK 112 (118)
T ss_pred ---CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEe--eEEeCCCccceEEEEEEh
Confidence 01122332 45678999999999999999888877 999998 799999987
No 146
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00011 Score=66.04 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=73.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhc-CCCcccccccCchhhcCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQ-RRPSRFEVTPAPDLLRGNPHGVSASSDNI 582 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~-~~~sr~~v~~~~~~l~~~~~~~~~~~~~~ 582 (704)
++.++.+++++.++.+.|. ..+...++|+++ ++.+|.++..++.... ... .. + ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~-------------~~------~-~~~ 60 (114)
T cd04630 2 NVVTIDGLATVAEALQLMK-EHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG-------------RD------P-DRV 60 (114)
T ss_pred CcEEECCCCcHHHHHHHHH-HcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC-------------CC------C-Ccc
Confidence 5788999999999999994 455667888775 4668888877754421 100 00 0 000
Q ss_pred CCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 583 PRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 583 ~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..++|. ++..+.|++++.++...|...+...+ ||+|+ |+++|++++
T Consensus 61 -----~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vvd~-~~~~Gvi~~ 108 (114)
T cd04630 61 -----NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRA--PVVEN-NELIGIISL 108 (114)
T ss_pred -----CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEe--eEeeC-CEEEEEEEH
Confidence 1223343 56788999999999999988787776 99998 999999987
No 147
>KOG2550|consensus
Probab=97.39 E-value=0.00015 Score=78.51 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=83.0
Q ss_pred cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccCce
Q psy6631 429 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVK 508 (704)
Q Consensus 429 ~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~v~ 508 (704)
.+++++.|+.|+.++++...++ +..++||.++.. -+.+|+|+|+.+|+-.. +.....+.|+|+++..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~-gF~g~pvTe~g~---------~~~KLvG~vtsrdi~f~---~~~~~~~~~vmt~~~~ 182 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKH-GFSGIPVTEDGK---------RGSKLVGIITSRDIQFL---EDNSLLVSDVMTKNPV 182 (503)
T ss_pred cCCcccCCcccchhhhhhcccc-cccccccccCCc---------ccceeEEEEehhhhhhh---hcccchhhhhcccccc
Confidence 4678899999999999999888 899999997651 34689999999998544 4566789999999999
Q ss_pred EEeCCCCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHh
Q psy6631 509 YIWNNMTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 509 tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
+...+.+++|+-+.+.+ ..++||++. ++..+-.+.+.|++
T Consensus 183 ~~~~gi~l~~~neiL~~~kkGkl~iv~~--~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 183 TGAQGITLKEANEILKKIKKGKLPVVDD--KGELVAMLSRTDLM 224 (503)
T ss_pred cccccccHHHHHHHHHhhhcCCcceecc--CCceeeeeehhhhh
Confidence 99999999999999965 444444332 24445555565554
No 148
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00018 Score=64.57 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=72.9
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++++++++.++.+.|...+....++|+++ ++.+|.++..++....... .. . .
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~--~~-------------~--~------ 57 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ--WA-------------Q--T------ 57 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh--cc-------------c--c------
Confidence 357889999999999999843323677888876 5667888777754322100 00 0 0
Q ss_pred CCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..++|. .+..+.|++++.++...|...+...+ ||+|++|+++|++++
T Consensus 58 ----~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l--~Vv~~~~~~~Gvl~~ 108 (114)
T cd04801 58 ----TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDEL--AVVEDSGQVIGLITE 108 (114)
T ss_pred ----chhhhhcccccceEECCCCcHHHHHHHHHHCCCCee--EEEcCCCcEEEEEec
Confidence 1122222 24567889999999999988888776 999999999999976
No 149
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.36 E-value=0.00019 Score=65.85 Aligned_cols=117 Identities=11% Similarity=0.123 Sum_probs=76.4
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|. ..+...+|++++ ++.+|.++..++........ .....+....... ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~-~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~--~~~~~~~~~~~~~------~~~~-- 70 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMR-KNNISGLPVVDEKGKLIGNISASDLKGLLLSPD--DLLLYRTITFKEL------SEKF-- 70 (126)
T ss_pred CeEEECCCccHHHHHHHHH-HhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc--hhhcccchhhhhh------hhhc--
Confidence 5788999999999999994 455667787765 56688888887654331110 0000000000000 0000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
....+.+. ++..+.|++++.++...|...+.+.+ ||+|++|+++|++|+
T Consensus 71 --~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l--~Vvd~~~~~~Giit~ 120 (126)
T cd04642 71 --TDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRV--WVVDEEGKPIGVITL 120 (126)
T ss_pred --ccccccccCCCeEECCCCcHHHHHHHHHHhCCcEE--EEECCCCCEEEEEEH
Confidence 01122343 67788999999999999988888776 999999999999987
No 150
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.35 E-value=0.00019 Score=64.03 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=72.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++++++++.++.+.|.+ .....++|+++++.+|.++..+.....-...+.+ .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~-------------------~~---- 57 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMRE-KRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDP-------------------ES---- 57 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHH-cCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCc-------------------Cc----
Confidence 57889999999999999954 3455677777666688888777542110000000 00
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..+++. ++..+.|++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 58 -~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l--~Vv~~~~~~~Gvvs~ 107 (113)
T cd04587 58 -TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHL--PVVDKSGQVVGLLDV 107 (113)
T ss_pred -CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcc--cEECCCCCEEEEEEH
Confidence 01223333 45567889999999999988888776 999999999999986
No 151
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00018 Score=64.55 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=71.9
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++++++++.++.+.|. ..+...+||+++ ++.+|.++.++...........+.. .+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~----~~~~-------------- 62 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLT-KHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLE----RLVD-------------- 62 (116)
T ss_pred CcEEECCCCcHHHHHHHHH-HCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHH----HHhC--------------
Confidence 4788999999999999995 455667888875 5678888887764432111000000 0000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. .+..+.|++++.++.+.|...+. +||+|++|+++|++|+
T Consensus 63 --~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~----~~Vv~~~~~~~Gvit~ 110 (116)
T cd04643 63 --LKVIDVMNTDVPVIIDDADIEEILHLLIDQPF----LPVVDDDGIFIGIITR 110 (116)
T ss_pred --CcHHHHhcCCCceecCCCCHHHHHHHHhcCCc----eeEEeCCCeEEEEEEH
Confidence 02233444 55667889999999888876543 3999999999999987
No 152
>KOG1764|consensus
Probab=97.30 E-value=7.8e-05 Score=82.49 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=120.1
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc--------cccccccccc
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS--------SGIYNVYVED 501 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~--------~~~~~~~V~d 501 (704)
+..++.+..++-++...+.++ +++..||.|.+ .+.++.+++++-++.... ......++.|
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~-~~~rvpv~d~~-----------~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~d 230 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKS-RIHRVPVIDPE-----------TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSD 230 (381)
T ss_pred CceeecCcHHHHHHHHHHHhC-Cccceeeeccc-----------ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHH
Confidence 338899999999999999988 89999999944 257888888877763211 1112223322
Q ss_pred c---cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCC
Q psy6631 502 F---MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577 (704)
Q Consensus 502 v---M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~ 577 (704)
. +..++..+..++++.++.+.| ..+++--+|++|+ ++.++.++..|...+..... ..-..-. .++.
T Consensus 231 l~ig~~~~i~~i~~~~~v~~al~~m-~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~-~~~~~~~-~l~~------- 300 (381)
T KOG1764|consen 231 LGIGTWSNIASISEDTPVIEALKIM-SERRISALPVVDENGKKVGNYSRFDVIHLAREGT-YNNLDLS-CLSE------- 300 (381)
T ss_pred hCcchhhhheeecCCCcHHHHHHHH-HhcCcCcceEEcCCCceecceehhhhhhhhhcCc-cCccchh-HHHH-------
Confidence 2 223578899999999999999 4688888899886 44466666666554432111 0000000 0000
Q ss_pred CCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 578 SSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 578 ~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
......... ++++|+|..++.++.+.+.....+++ .|||+.|+++|+|+-
T Consensus 301 --------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl--~VVd~~~~l~GvvSL 351 (381)
T KOG1764|consen 301 --------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRL--WVVDEDGVLVGVISL 351 (381)
T ss_pred --------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEE--EEEcCCCcEEEEeeH
Confidence 001111112 58999999999999999999999998 999999999999986
No 153
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.28 E-value=0.00019 Score=63.94 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=74.5
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
|+++++.+++++.++.+.|.+ .....+|+.++ ++.+|.+++.++..........+ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~--------------------~-- 57 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAH-SPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYD--------------------L-- 57 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHh-CCCcceeEECCCCCEEEEEEHHHHHHHHhcccccc--------------------c--
Confidence 467889999999999999953 44556788776 45678788777654221100000 0
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCC-CCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTP-YTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~-~g~l~G~vtr 637 (704)
.+..+++. .+..+.|++++.++.+.|...+...+ ||+++ +|+++|++++
T Consensus 58 ---~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~Vv~~~~~~~~Gvvt~ 108 (114)
T cd04613 58 ---VVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQL--PVVDDDPGKLLGILSR 108 (114)
T ss_pred ---EEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEe--eEEeCCCCEEEEEEEh
Confidence 02233343 56777899999999999988888776 99998 8999999987
No 154
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.27 E-value=0.00024 Score=63.35 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=73.5
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh-hhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE-ERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~-~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.|+.+.|.+ .....++|+++++.+|.++..+.. ..... . . .+ ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~--------------~----~-~~-~~-- 57 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMRE-HDVGALPVCENDRLVGIVTDRDIVVRAVAE--------------G----R-DP-DT-- 57 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHH-cCCCEEEEeeCCEEEEEEEhHHHHHHHhhc--------------c----C-Cc-cc--
Confidence 357889999999999999954 445678888776667877776643 11100 0 0 00 00
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. .+..+.+++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 58 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~it~ 107 (113)
T cd04622 58 ---TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRL--PVVDDDGRLVGIVSL 107 (113)
T ss_pred ---CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCee--eEECCCCcEEEEEEH
Confidence 01333443 56667889999999998988777776 999999999999987
No 155
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.23 E-value=0.0003 Score=63.18 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|.+ .+...++|.++ ++.+|.++.+++........... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~--------------------~--- 57 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIE-SKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE--------------------P--- 57 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHh-CCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccc--------------------c---
Confidence 46789999999999999953 55667788775 56688787777543221100000 0
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCC--CCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPY--TTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~--g~l~G~vtr 637 (704)
....+.|. .+..+.+++++.++...|...+...+ ||+|++ |+++|++++
T Consensus 58 --~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~--~Vvd~~~~~~~~Gvit~ 109 (115)
T cd04593 58 --SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQL--PVVDRGNPGQVLGLLTR 109 (115)
T ss_pred --ccHHHhccCCceEECCCCCHHHHHHHHHHcCCcee--eEEeCCCCCeEEEEEEh
Confidence 01222333 56677899999999999988888776 999998 899999987
No 156
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=97.23 E-value=0.0016 Score=71.61 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhCCccccccchhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcc-hHHHHHHHHHHHHHHhhh-hh
Q psy6631 281 FMLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPII-PGGYATVGAAAFSGAVTH-TI 358 (704)
Q Consensus 281 ~~~~K~~~t~lt~g~g~pGGiF~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~-p~~yAlvGmaAf~aav~~-~i 358 (704)
-.+.|++.+.++.++|.+-|-=-|+.-+||++|..++..+..- ..+ --.+...|++|-++++-+ |+
T Consensus 40 ~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~------------~~~~~r~l~~~g~aAglaa~F~aPl 107 (355)
T PF00654_consen 40 TLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLS------------RNETRRLLLAAGAAAGLAAAFNAPL 107 (355)
T ss_dssp HHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhccc------------chHHHhHHHHHHHHHHHHHHhcCCc
Confidence 3578999999999999999999999999999999999875321 112 334899999999999888 89
Q ss_pred HHHHHHHHHhC---CchhHHHHHHHHHHHHHHHhhc
Q psy6631 359 SVSVIMFEMTG---QITHIIPVMIAVLISNAVAALL 391 (704)
Q Consensus 359 s~~viv~ElTG---~~~~~lPimia~~is~~va~~l 391 (704)
..++..+|... +...++|.++++++++.+.+.+
T Consensus 108 aG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 108 AGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp HHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceehhheeeccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999865 4678999999999999999987
No 157
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.23 E-value=0.00027 Score=79.12 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=81.6
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+|+|++ ++.+++.+++++|+.+.+.+ .+..-+||.++ ++.+|.+..+|....... .
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~-~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~------- 253 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIE-NGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------K------- 253 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHh-CCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------C-------
Confidence 34589999996 78999999999999999965 44445666654 466787777765321110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ....+++.+++...+.+++.+..+.|...+.+.. +|||+||.++|+||.
T Consensus 254 ----------~-----~~l~~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~a--iVvDE~G~~~GiVT~ 303 (408)
T TIGR03520 254 ----------N-----FDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLA--IVVDEYGGTSGLVTL 303 (408)
T ss_pred ----------C-----CCHHHHcCCCeEeCCCCcHHHHHHHHHhcCceEE--EEEcCCCCEEEEEEH
Confidence 0 0123445566778889999999888988777655 999999999999998
No 158
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.22 E-value=0.00036 Score=62.80 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=76.0
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++++++++.++.+.|.. .+...+||+++++.+|.++..+.........+.. ...+... .. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~--~~~~~~~-----------~~--~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKE-NSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTL--DIWELYY-----------LL--S 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHh-CCcceeeEecCCeEEEEEeHHHHHHhhhcccccc--cchhhhh-----------hh--c
Confidence 57789999999999999954 4556788887766688888777654321110000 0000000 00 0
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....++|. .+..+.+++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGL--PVVDDQGRLVGIITE 116 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCce--eEECCCCcEEEEEEH
Confidence 002233444 56678899999999999988888776 999999999999987
No 159
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.22 E-value=0.00029 Score=62.72 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=72.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
++.++.+++++.++.+.|. ..+...++++++ ++.+|.++..++........ .+ .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~-~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-~~-~--------------------- 57 (111)
T cd04590 2 DIVALDADDTLEEILELIA-ESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-ED-L--------------------- 57 (111)
T ss_pred ceEEEcCCCCHHHHHHHHh-hCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-Cc-C---------------------
Confidence 5788999999999999995 455667888765 45688888777554321100 00 0
Q ss_pred CCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.....+.++..+.++.++.++...|...+...+ ||+|+.|+++|++|+
T Consensus 58 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 58 ----DLRDLLRPPLFVPESTPLDDLLEEMRKERSHMA--IVVDEYGGTAGLVTL 105 (111)
T ss_pred ----CHHHHhcCCeecCCCCcHHHHHHHHHhcCCcEE--EEEECCCCEEEEeEH
Confidence 011122244556889999999899998888776 999999999999987
No 160
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.19 E-value=0.00039 Score=80.77 Aligned_cols=103 Identities=14% Similarity=0.205 Sum_probs=76.6
Q ss_pred ccccccccc-cceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcc------
Q psy6631 420 NVYVEDFMV-RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSS------ 492 (704)
Q Consensus 420 ~~~V~diM~-~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~------ 492 (704)
..+|+++|+ +++.+++++++++++.+.|.++ +++.+||||++ ++++|+|++.|++.....
T Consensus 245 ~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~-~~~~~PVvd~~------------g~lvGiit~~dl~~~~~~~~iLVD 311 (546)
T PRK14869 245 SIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKS-RYRSYPVVDED------------GKVVGVISRYHLLSPVRKKVILVD 311 (546)
T ss_pred CCCHHHhccCCCcEEECCCCcHHHHHHHHHhc-CCCceEEEcCC------------CCEEEEEEHHHhhccccCceEEEc
Confidence 467999999 8999999999999999999988 78999999987 799999999999743211
Q ss_pred -------------c-----ccccccccccccCceEEe---CCCCHHHHHHHhHhcCCCceeeccc
Q psy6631 493 -------------G-----IYNVYVEDFMVRDVKYIW---NNMTYRDLKNLLKENRSLRVFPLVE 536 (704)
Q Consensus 493 -------------~-----~~~~~V~dvM~~~v~tV~---~d~sl~ea~~~m~~~~rl~Vvpvv~ 536 (704)
. .+..+++++|++++..+. ...+...+.+.|. ..+.+..|+..
T Consensus 312 ~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~-~~~i~~~~~ia 375 (546)
T PRK14869 312 HNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYR-ENGIEPSPEIA 375 (546)
T ss_pred CccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHH-HcCCCCCHHHH
Confidence 0 123467788988876552 2444456777774 45555555553
No 161
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.17 E-value=0.00029 Score=80.76 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=80.9
Q ss_pred ccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCC
Q psy6631 500 EDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGV 575 (704)
Q Consensus 500 ~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~ 575 (704)
+.-|.+++.++++|+++.|+.+.| ...+...+||+|+ ++.+|.++.+++.... . .
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm-~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~----------~- 161 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELK-ASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------D----------R- 161 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHH-HhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------c----------c-
Confidence 444889999999999999999999 4566778888876 4567877777753211 0 0
Q ss_pred CCCCCCCCCCCCCCCCccc-C--ccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 576 SASSDNIPRTENLDGPQFC-P--VFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~--v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..++|+ . +.+..|+.++.++...|...+...+ ||||++++++|+|||
T Consensus 162 ----------~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~L--PVVD~~g~LvGvITr 214 (505)
T PLN02274 162 ----------ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKL--PLVNEDGELVDLVTR 214 (505)
T ss_pred ----------CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCeEEEEEEH
Confidence 012445555 3 6688999999999999998888887 999999999999999
No 162
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.13 E-value=0.0002 Score=82.01 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=82.1
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC----CCceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES----SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~----~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..++.|.+++.++++++++.|+.++|. ..+...+||+++ ++.+|.++.+++..... .
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~-~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~--------~---------- 157 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKE-KKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD--------K---------- 157 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHH-HcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc--------C----------
Confidence 456789999999999999999999994 466778888876 45678777777541100 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc---CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC---PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|+ ++.+..|+.++.++.+.|...+...+ ||||++++++|+|||
T Consensus 158 ------------~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~L--PVVd~~g~liGIIT~ 210 (495)
T PTZ00314 158 ------------STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKL--PIVNDNGELVALVSR 210 (495)
T ss_pred ------------CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeE--EEEcCCCcEEEEEEe
Confidence 002334454 46777899999999999999888887 999999999999998
No 163
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.13 E-value=0.00023 Score=75.75 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=85.9
Q ss_pred ccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccCC-CceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 496 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 496 ~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~-~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
-.+|+|+|+ .+.-++.++++++|-.++-. ..+...+||++.. ..+| ++..-|.+.+.|
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~-kt~~sRfPVvn~~~kvvG------------------vVt~rDv~~~~~ 247 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVE-KTGHSRFPVVNRSMKVVG------------------VVTMRDVLDKKP 247 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHH-HcCCCccceecccceEEE------------------EEEehhhhcCCC
Confidence 468899999 77888999999999888874 4455578888864 3344 334344444422
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH--HHHHHHHHhc
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR--IRMAFEAIFH 647 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr--~r~a~e~~~~ 647 (704)
. .+...+|+ -+++..|.+++..+-.-|---++.-+ ||+|+..+++||||| +=++..-+.|
T Consensus 248 ~-------------t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~--PVv~~n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 248 S-------------TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEML--PVVDSNNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred C-------------ccHHHHhccCCeeecccchHHHHHHHHHhccceee--eEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence 1 14677899 69999999999998666666666544 999999999999999 5555555554
No 164
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.12 E-value=0.00057 Score=60.25 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=70.7
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++++++++++.++.+.|. ..+...++++++ ++.+|.++..++......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~-~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~----------------------------- 51 (106)
T cd04582 2 EPITVRPDDPLSDALGLMD-DSDLRALTVVDADGQPLGFVTRREAARASGG----------------------------- 51 (106)
T ss_pred CCcEecCCCcHHHHHHHHH-hcCCCEEEEECCCCCEEEEEeHHHHHHhccc-----------------------------
Confidence 5788999999999999994 455667888874 566887877765432100
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+.+. .+..+.+++++..+...|...+...+ ||+|++|+++|++++
T Consensus 52 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Vv~~~~~~~Gvi~~ 100 (106)
T cd04582 52 ---CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWL--PCVDEDGRYVGEVTQ 100 (106)
T ss_pred ---chhhhcccCCEEECCCCCHHHHHHHHHHCCCCee--eEECCCCcEEEEEEH
Confidence 0111222 33456888998888888888888776 999999999999987
No 165
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.12 E-value=0.00031 Score=79.68 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=82.0
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCC----CceEEeehHHHhhhcCCCcccccccCchhhcCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS----GKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPH 573 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~----~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~ 573 (704)
..++.|.+++.++.+++++.|+.+.|. ..+...+||+|++ +.+|.++.+++..... + .
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~-~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~--------~------~--- 142 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELME-RKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD--------K------G--- 142 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHH-HcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc--------C------C---
Confidence 456778899999999999999999995 4566678888764 5678777776532110 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCccc--CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 574 GVSASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..++|. ++..+.+++++.++...|...+.+.+ ||||++|+++|+||+
T Consensus 143 -------------~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~l--pVVDe~G~lvGiVT~ 193 (450)
T TIGR01302 143 -------------KPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKL--PVVDKNGELVGLITM 193 (450)
T ss_pred -------------CCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeE--EEEcCCCcEEEEEEh
Confidence 02233443 56778899999999999998888876 999999999999998
No 166
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.12 E-value=0.0004 Score=61.65 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=72.2
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP 583 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~ 583 (704)
+++.++.+++++.++.+.|. ..+...++|.++ ++.+|.++.+++........+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~----~-------------------- 56 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMI-EENINHLPVVDEDGRLVGIVTSWDISKAVARDKK----S-------------------- 56 (110)
T ss_pred CCCEEECCCCCHHHHHHHHH-hCCCceEEEECCCCcEEEEEeHHHHHHHHhhCcc----C--------------------
Confidence 56789999999999999994 355667888776 566888887775432211100 0
Q ss_pred CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 584 RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 584 ~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.+. ++..+.+++++.++...|...+...+ ||++++|+++|++++
T Consensus 57 -----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~~~~~~G~v~~ 104 (110)
T cd04605 57 -----VEDIMTRNVITATPDEPIDVAARKMERHNISAL--PVVDAENRVIGIITS 104 (110)
T ss_pred -----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEE--eEECCCCcEEEEEEH
Confidence 111122 45567888899999888887776666 999999999999988
No 167
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.00034 Score=63.69 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=76.6
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNI 582 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~ 582 (704)
+++.++.+++++.|+.+.|.+ .+...+||+++ ++.+|.+++.++........+.+..+.. . ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~-----------~-~~~~ 67 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVR-NGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTG-----------N-GLEA 67 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHH-cCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcccccc-----------c-cchh
Confidence 357889999999999999954 45557788766 5668888888875433222111111100 0 0000
Q ss_pred CCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 583 PRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 583 ~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.. .+..+++. .+..+.+++++.++...|...+...+ ||++++|+++|+|++
T Consensus 68 ~~--~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~V~~~~~~~~Gvit~ 119 (125)
T cd04631 68 IN--EPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGL--PVVDDDGKLVGIVTE 119 (125)
T ss_pred hh--cCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceE--EEEcCCCcEEEEEEH
Confidence 00 02223333 56778899999999888888777766 999999999999987
No 168
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.05 E-value=0.00032 Score=79.54 Aligned_cols=113 Identities=11% Similarity=0.102 Sum_probs=78.9
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCC
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNP 572 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~ 572 (704)
....+|+++|.+++.++.+++++.|+.+.|. ..+...+||+|+ ++.+|.++..++........
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~-~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~--------------- 395 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILR-EYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK--------------- 395 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHH-HcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC---------------
Confidence 4457899999999999999999999999995 355667888875 45678887777543221000
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 573 HGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+. ..+..++|. ++..+.|++++.++...|...+. |+|+++|+++|+||+
T Consensus 396 ----~~~------~~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~~-----~vV~~~g~liGvvt~ 446 (454)
T TIGR01137 396 ----ANP------DDAVSKVMSKKFIQIGEGEKLSDLSKFLEKNSS-----AIVTEEGKPIGVVTK 446 (454)
T ss_pred ----CCc------CCCHHHhcCCCCeEECCcCcHHHHHHHHHHCCe-----eEEEECCEEEEEEEH
Confidence 000 002233444 45567888888888877765443 778888999999998
No 169
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.04 E-value=0.0005 Score=61.06 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=71.5
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++.++++++++.|+.+.|.+ .+...+++.++++.+|.+...++...... +.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~G~v~~~~l~~~~~~--~~~~~---------------------- 55 (110)
T cd04588 1 KPLITLNPNATLREAARLFNT-HHIHGAPVVDDGKLVGIVTLSDIAHAIAR--GLELA---------------------- 55 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHH-cCCCEEEEeeCCEEEEEEEHHHHHHHHhc--ccccc----------------------
Confidence 357889999999999999954 45667888776555777776664332110 00000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+..+.+. ++..+.++.++.++...|...+...+ ||++++|++.|++++
T Consensus 56 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~i~~ 104 (110)
T cd04588 56 ---KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRL--IVTDDEGRPVGIITR 104 (110)
T ss_pred ---CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEE--EEECCCCCEEEEEEh
Confidence 1222333 55667889999998888887777766 999999999999987
No 170
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.00084 Score=60.09 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=49.0
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+++++|.++..++.+++++.++++.|.++ +.+.+||+|++ ++++|+|+.+|++
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRER-SIRHLPILDEE------------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHC-CCCEEEEECCC------------CCEEEEEEhHHhc
Confidence 468899999999999999999999999988 78999999876 7899999998885
No 171
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.01 E-value=0.00061 Score=60.36 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=72.4
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++.++.+++++.++.+.|.+ .....+|++++++.+|.++..++....... +.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~-~~~~~---------------------- 56 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFG-ERHRGYPVVDDGRLVGIVTLADIRRVPAEG-REATV---------------------- 56 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHH-cCCCcceEeeCCeEEEEEEHHHHHHHHhcC-ccccc----------------------
Confidence 357789999999999999954 345677887776667877777754322110 00000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+.+. ++..+.+++++.++.+.|...+...+ ||++++|+++|++++
T Consensus 57 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~it~ 105 (111)
T cd04612 57 ---LVGDVMTRDPVTASPDETLRDALKRMAERDIGRL--PVVDDSGRLVGIVSR 105 (111)
T ss_pred ---CHHHhccCCCeEECCCCCHHHHHHHHHhCCCCee--eEEcCCCCEEEEEEH
Confidence 1122233 55667888998888888888777766 999999999999986
No 172
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.01 E-value=0.0005 Score=61.15 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=72.7
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
+++.++++++++.++.+.|.+ .+...+||+++++.+|.++..++....-..+.. . .
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~---~-----------------~--- 56 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTE-HRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD---P-----------------D--- 56 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHH-cCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC---c-----------------c---
Confidence 357889999999999999954 445567887776668888877754321000000 0 0
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
.+..+++. .+..+.|++++.++...|...+...+ ||+++ |+++|++++
T Consensus 57 --~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~Giit~ 105 (111)
T cd04800 57 --TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHL--PVVDD-GRLVGVISA 105 (111)
T ss_pred --CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCee--eEeEC-CEEEEEEEH
Confidence 01223333 55567899999999999998888776 99988 999999987
No 173
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.96 E-value=0.00066 Score=60.24 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=71.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|. ..+...+||.++ ++.+|.+..++.........+. ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-------------------~~---- 57 (113)
T cd04623 2 DVITVRPDATVAEAAKLMA-EKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGAS-------------------AL---- 57 (113)
T ss_pred CCEEECCCCcHHHHHHHHH-HcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCC-------------------cc----
Confidence 5678999999999999994 455667888865 5667877777754322110000 00
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++..+.++.++.++...|...+...+ ||+++ |+++|++++
T Consensus 58 -~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~--~Vv~~-~~~~Gvit~ 107 (113)
T cd04623 58 -DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHL--PVVDG-GKLVGIVSI 107 (113)
T ss_pred -ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEe--EEEeC-CEEEEEEEH
Confidence 002333443 56667888888888888887777766 99998 999999987
No 174
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.93 E-value=0.00067 Score=61.11 Aligned_cols=111 Identities=10% Similarity=0.017 Sum_probs=72.8
Q ss_pred cCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 505 RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 505 ~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++++++.+++++.++.+.|...++...++++++++.+|.++..++.......-.. +....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~~------~~~~~-------------- 60 (119)
T cd04598 1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYGR------ALYGK-------------- 60 (119)
T ss_pred CCcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhhH------HHHcC--------------
Confidence 3577899999999999999543336678888776667878777654322110000 00000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCc-CcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPML-TPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~-~Pvv~~~g~l~G~vtr 637 (704)
.+..+.|. ++..+.|+.++.++.+.|...+..++. .|+|+++|+++|++++
T Consensus 61 --~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~ 113 (119)
T cd04598 61 --KPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTV 113 (119)
T ss_pred --CcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEH
Confidence 02334444 566778899988888888776643221 2799999999999987
No 175
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.92 E-value=0.00058 Score=76.94 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=88.9
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
.+|.++|+.+.++++|+.++.+|++.|...+---++-+.+++...|++++++....+ +-+ .+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v-------~~~------g~----- 210 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRV-------IAD------GR----- 210 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHH-------Hhc------CC-----
Confidence 678999999999999999999999999652222356666777778888888865543 111 10
Q ss_pred CCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
++.+++.++|+ +|....+.+.+..||..|+-....|+ +|+.+|+++|++|-
T Consensus 211 -------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl---~V~e~gq~~Gilt~ 262 (610)
T COG2905 211 -------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHL---PVTEDGQPLGILTL 262 (610)
T ss_pred -------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCcee---eeecCCeeeEEeeH
Confidence 01236888999 99999999999999999999999997 56677999999987
No 176
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.92 E-value=0.00059 Score=60.77 Aligned_cols=103 Identities=9% Similarity=0.057 Sum_probs=71.5
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
+++++++++++.|+.+.|.+ .+...++++++++.+|.++..++..........+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~------------------------- 55 (111)
T cd04589 2 PPLIVDASTSIRDAARLMRE-HGADALLVRDGDPRLGIVTRTDLLDAVLLDGLPS------------------------- 55 (111)
T ss_pred CCEEECCCCcHHHHHHHHHH-cCCCEEEEecCCeEEEEEEHHHHHHHHHcCCCCC-------------------------
Confidence 46789999999999999954 4555678777666678787776543221000000
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+.|. .+..+.|++++.++...|...+...+ ||+++ |+++|++++
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~G~it~ 105 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRV--VVREG-GEVVGVLEQ 105 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEE--EEeeC-CEEEEEEEh
Confidence 001223444 56677899999999888988888766 99886 899999987
No 177
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.92 E-value=0.00028 Score=80.84 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=82.6
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCC
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVS 576 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~ 576 (704)
.++++|.+++.++.+++++.|+.+.|. ..+...+||+++ ++.+|.++.+++.... . .
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~-~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------~------~------ 145 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMA-RYGISGVPVVDENGKLVGIITNRDVRFET---------D------L------ 145 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHH-HhCCCEEEEEccCCEEEEEEEHHHhhhcc---------c------C------
Confidence 568899999999999999999999995 456668888875 5567877777653210 0 0
Q ss_pred CCCCCCCCCCCCCCCccc--CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 577 ASSDNIPRTENLDGPQFC--PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~--~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..++|. ++.++.+++++.++...|...+...+ ||+|++|+++|++|+
T Consensus 146 ---------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~l--pVVDe~g~lvGiIT~ 197 (486)
T PRK05567 146 ---------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKL--PVVDDNGRLKGLITV 197 (486)
T ss_pred ---------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEE--EEEcCCCcEEEEEEh
Confidence 002334443 67788999999999999988888776 999999999999998
No 178
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0013 Score=70.99 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=95.3
Q ss_pred cccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIY 495 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~ 495 (704)
+++++|+|+|.+ ++..+..|++.++.++.+..+ .|+.+||-.++. ...+|+++.+|+++...++..
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s-~HtRiplyr~~~-----------DnIiGvlh~r~llr~l~e~~~ 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHS-PHTRIPLYRDDL-----------DNIIGVLHVRDLLRLLNEKNE 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhC-CCCceeeecCCh-----------hHhhhhhhHHHHHHHhhccCc
Confidence 568999999984 588899999999999999988 799999997663 359999999999876554443
Q ss_pred ccccccccc--cCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH-hhhcCCCc
Q psy6631 496 NVYVEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR-EERQRRPS 557 (704)
Q Consensus 496 ~~~V~dvM~--~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~-~~~~~~~s 557 (704)
.+-.|+++ .++..|...+++.+-+..|.+ ++..+--|+|+ +...|-++..|. +..+|-..
T Consensus 265 -~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~-~k~hialVVDEYG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 265 -FTKEDILRAADEPYFVPEGTPLSDQLVAFQR-NKKHIALVVDEYGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred -ccHhHHHHHhcCCeecCCCCcHHHHHHHHHH-hcceEEEEEeccCcEEeeeeHHHHHHHHhcccc
Confidence 44456663 568889999999999999954 55555667776 555565555554 45666554
No 179
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.90 E-value=0.0008 Score=59.09 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=69.4
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.++.+.|.+ .....+||+++++.+|.++..+...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~d~~~~~Giv~~~~l~~~~~---~~-------------------------- 51 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEK-HRIGGLPVVEDGKLVGIITSRDVRRAHP---NR-------------------------- 51 (105)
T ss_pred CCEEECCCCcHHHHHHHHHH-cCCCEEEEEECCEEEEEEehHHhhcccc---cC--------------------------
Confidence 56789999999999999954 4455677777666677777665432110 00
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+++. .+..+.+++++.++.+.|...+...+ ||+|+ |+++|++|+
T Consensus 52 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~G~it~ 99 (105)
T cd04599 52 --LVADAMTREVVTISPEASLLEAKRLMEEKKIERL--PVLRE-RKLVGIITK 99 (105)
T ss_pred --CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEe--eEEEC-CEEEEEEEH
Confidence 0112222 55667889999999999998888877 99998 999999987
No 180
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.89 E-value=0.00056 Score=61.83 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=74.7
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.|+.+.|.+ .+...++|+++++.+|.++..++..........+-.. ..+. ...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~-~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~---~~~~----------~~~-- 65 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLD-HDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDR---HQER----------RIR-- 65 (121)
T ss_pred CCEEECCCCcHHHHHHHHHH-cCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccch---hhhh----------hhh--
Confidence 57789999999999999854 5566788887766688787776543221100000000 0000 000
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+..+.|. +...+.|++++.++.+.|...+...+ ||+|. |+++|++++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~--~Vv~~-~~~~Gvi~~ 115 (121)
T cd04633 66 NLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGL--PVVDD-GKLVGIVTR 115 (121)
T ss_pred ccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcc--cEEEC-CEEEEEEEH
Confidence 002223343 66778999999999999988888877 99998 999999987
No 181
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.81 E-value=0.0012 Score=58.58 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=48.9
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.+++.++.++++++++.+.|.++ +...+||++++ ++++|+++..|++
T Consensus 53 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------~~~~G~it~~di~ 106 (108)
T cd04596 53 TTIEKVMTKNPITVNPKTSVASVAHMMIWE-GIEMLPVVDDN------------KKLLGIISRQDVL 106 (108)
T ss_pred ccHHHHhcCCCeEECCCCCHHHHHHHHHHc-CCCeeeEEcCC------------CCEEEEEEHHHhh
Confidence 468999999999999999999999999988 78999999876 7899999988875
No 182
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.76 E-value=0.0017 Score=57.73 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=47.8
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++++|.+++.++.++++++++++.|.++ +...+||++ + ++++|+++.+|++.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-~~~~l~Vv~-~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNPEPIVASPDDSIDEVRRLMVER-HLRYLPVLD-G------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCCCCeEECCCCCHHHHHHHHHHc-CCCeeeEEE-C------------CEEEEEEEHHHhhc
Confidence 469999999999999999999999999988 788899998 4 58999999988853
No 183
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.74 E-value=0.0019 Score=58.39 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=50.1
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..++.++|.+++..+.++++++++.+.|.++ +.+.+||+|++ ++++|+++..|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vvd~~------------g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEH-DIGRLPVVNEK------------DQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHc-CCCeeeEEcCC------------CcEEEEEEhHHhhc
Confidence 4668899999999999999999999999988 78899999877 78999999988853
No 184
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.71 E-value=0.0022 Score=56.60 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=48.6
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.++..+++++++++++.+.+.++ +...+||++++ ++++|+++.+|++
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~vv~~~------------g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKR-GPKYVPVVDED------------GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHc-CCceeeEECCC------------CeEEEEEehHHhh
Confidence 358899999999999999999999999987 78899999977 7899999998875
No 185
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.70 E-value=0.0021 Score=56.54 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=48.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.+++.++.++++++++++.+.++ +...+||++++ ++++|+|+..|++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------g~~~Gvi~~~di~ 105 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRT-GISKLPVVDEN------------NNLVGIITNTDVI 105 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHh-CCCeEeEECCC------------CeEEEEEEHHHhh
Confidence 458899999999999999999999999987 67899999977 7899999988875
No 186
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.70 E-value=0.0017 Score=56.64 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=70.9
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPR 584 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~ 584 (704)
++.++.+++++.++.+.|.. .+...++++++ ++.+|.++..++..........+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~---------------------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLE-HGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLV---------------------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHh-cCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccc----------------------
Confidence 46789999999999999954 45667888876 5667777766654322111110000
Q ss_pred CCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 585 TENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 585 ~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+.+. ++..+.+++++.++.+.|...+...+ ||+|++|+++|++++
T Consensus 59 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~~~G~i~~ 107 (113)
T cd02205 59 ---TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRL--PVVDDEGRLVGIVTR 107 (113)
T ss_pred ---cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEE--EEEcCCCcEEEEEEH
Confidence 0111222 45566788999999888887777766 999999999999987
No 187
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.69 E-value=0.0021 Score=57.28 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=49.0
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.++|.+++.++.+++++.++++.+.++ +...+||+|++ ++++|+++..|++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vvd~~------------g~~~Gvvt~~dl~ 111 (113)
T cd04615 57 DAKVREVMNSPVITIDANDSIAKARWLMSNN-NISRLPVLDDK------------GKVGGIVTEDDIL 111 (113)
T ss_pred CCcHHHhccCCceEECCCCcHHHHHHHHHHc-CCCeeeEECCC------------CeEEEEEEHHHhh
Confidence 4568899999999999999999999999987 67889999877 7999999988874
No 188
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.67 E-value=0.0019 Score=58.03 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=47.4
Q ss_pred cccccccccceEEecC--CCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWN--NMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~--~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.++...+.. +++++++++.|.++ +...+||||++ ++++|+|+++|++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~pVv~~~------------~~~~Gvit~~di~ 112 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRES-KKGKLPIVNDD------------GELVALVTRSDLK 112 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhc-CCCceeEECCC------------CeEEEEEEHHHhh
Confidence 3588999988888866 99999999999998 78899999877 7899999998875
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0046 Score=69.13 Aligned_cols=112 Identities=8% Similarity=-0.008 Sum_probs=85.5
Q ss_pred cccccccccce---EEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 421 VYVEDFMVRDV---KYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 421 ~~V~diM~~~v---~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
+++.++|.+.. ....++.+..++++.+... +.....|+|++ ++++|.++.+++....+. ..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~---~~ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDE-DREYGYVIERG------------NKFVGAVSIDSLKTALTQ---QQ 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhc-CCceEEEEcCC------------CcEEEEEeHHHHHhhhhc---CC
Confidence 45677775432 2234677899999999988 78999999988 899999999888644332 23
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
.+.+.|.+++.++.+++++.|++..+.. ...+ +||+|+ ++.+|.+++..+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~g~~~~~~~~ 389 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQ-APCA-VPVVDEDQQYVGIISKGMLL 389 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHh-CCCc-EEEECCCCcEEEEEEHHHHH
Confidence 5788888889999999999999999965 5555 788875 6667777776654
No 190
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.65 E-value=0.0026 Score=56.53 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=48.6
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+++++.+++++|.++ +.+.+||++ + ++++|+|+..|++
T Consensus 55 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~~-~------------~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMSTDVVTVPPDTPLSEVQELMVEH-DIGRVPVVE-D------------GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcCCCEEECCCCcHHHHHHHHHHc-CCCeeEEEe-C------------CEEEEEEEhHHhh
Confidence 4568899999999999999999999999988 788999998 5 6899999998875
No 191
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=96.64 E-value=0.0026 Score=50.11 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=42.5
Q ss_pred cccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 499 V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
|+|+|+++++++++++++.|+.+.|. ..+...+||+++ ++.+|.++..++.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~d~~~~~~G~is~~dl~ 52 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMR-KNGISRLPVVDEDGKLVGIISRSDLL 52 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHH-HHTSSEEEEESTTSBEEEEEEHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHH-HcCCcEEEEEecCCEEEEEEEHHHHH
Confidence 57899999999999999999999995 466778999965 5667888777754
No 192
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.63 E-value=0.0024 Score=56.76 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=49.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
+.+++++|.++...+.+++++.++.+.+.++ +...+||+|++ ++++|+|+..|++.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKY-DLLALPVVDEE------------GRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHc-CCceeeeECCC------------CcEEEEEEhHHhhh
Confidence 3568899999999999999999999999988 77889999876 78999999998853
No 193
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.62 E-value=0.0033 Score=55.88 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=48.2
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++..+.++++++++++.+.++ +...+||+|++ +++|+|++.|++.
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~-------------~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKH-GIKRLPVVDDD-------------ELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCCCcEEECCCCCHHHHHHHHHHc-CCCeeEEeeCC-------------EEEEEEEhhhhhc
Confidence 3568899999999999999999999999988 77889999754 7999999998853
No 194
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0022 Score=57.01 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=48.1
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+.++|.+++.++.++++++++.+.|.++ +...+||++++ ++++|+++..|+.
T Consensus 57 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~G~it~~dl~ 109 (111)
T cd04639 57 PVRGVMRRDFPTVSPSATLDAVLRLMQQG-GAPAVPVVDGS------------GRLVGLVTLENVG 109 (111)
T ss_pred cHHHHhcCCCcEECCCCcHHHHHHHHHhc-CCceeeEEcCC------------CCEEEEEEHHHhh
Confidence 58899999999999999999999999987 78899999876 6899999998874
No 195
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.57 E-value=0.0033 Score=55.63 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=49.3
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++.++.+++++.++++.+.+. +...+||+|++ ++++|+|+..|++.
T Consensus 55 ~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~Vv~~~------------~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSPLLTVPADTSLYDARQLMREH-GIRHLVVVDDD------------GELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCCceEECCCCCHHHHHHHHHHc-CCeEEEEECCC------------CcEEEEEEhHHhhc
Confidence 4568999999999999999999999999987 67889999976 78999999988853
No 196
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.57 E-value=0.0019 Score=57.04 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=65.7
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCC
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRT 585 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~ 585 (704)
++.++.+++++.|+.+.|.+ .....+||+++++.+|.++..++...........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~-~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~------------------------- 55 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMRE-YGVSQLPVVDDGRVVGSIDESDLLDALIEGKAKF------------------------- 55 (110)
T ss_pred CcEEECCCCcHHHHHHHHHH-cCCceeeEeeCCeeEEEEeHHHHHHHHhcccccc-------------------------
Confidence 46789999999999999954 4456778777666678777776544321100000
Q ss_pred CCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 586 ENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 586 ~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+..+.+. .+....+++++.++...|.. . ..+ |||+++|+++|++++
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~--~vv~~~~~~~Gvvt~ 104 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVA--VVVDEGGKFVGIITR 104 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-Cce--eEEecCCeEEEEEeH
Confidence 001222333 34456777877777777766 2 233 899999999999987
No 197
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.57 E-value=0.0024 Score=56.77 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=48.5
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.++.++|.++..++.++++++++++.+.++ +...+||++++ ++++|+|+..|++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~iG~it~~di~ 112 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEEN-KITALPVVDDN------------GRPVGVLHIHDLL 112 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHc-CCCEEEEECCC------------CCEEEEEEHHHhh
Confidence 359999999999999999999999999987 77899999876 7899999998875
No 198
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.54 E-value=0.0027 Score=57.40 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=49.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.++|.+++.++.+++++.++++.|.++ +...+||+|++ ++++|+++..|++
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvit~~dl~ 120 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVEN-KIGCLPVVDDK------------GTLVGIITRSDFL 120 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHc-CCCeEEEEcCC------------CCEEEEEEHHHhh
Confidence 5679999999999999999999999999987 77889999876 6899999998874
No 199
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.54 E-value=0.0033 Score=55.53 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=47.5
Q ss_pred ccccccccccceEEecC-CCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWN-NMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~-~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+ ++++.++++.+.++ +...+||+|++ ++++|+|+..|++
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~Vv~~~------------~~~~Gvi~~~dil 108 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEH-KIEKLPVVDDE------------GKLKGLITVKDIE 108 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHh-CCCeeeEEcCC------------CCEEEEEEhhhhh
Confidence 35688999887777777 99999999999998 78899999876 6899999999885
No 200
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.54 E-value=0.0027 Score=58.90 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=49.3
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++..+.+++++.++++.|.+. +.+.+||+| + ++++|+|++.|++.
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~l~Vvd-~------------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEH-RIKRVPVVR-G------------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHc-CCCccCEec-C------------CEEEEEEEhHhhhc
Confidence 3569999999999999999999999999998 788999998 6 78999999998853
No 201
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.45 E-value=0.0077 Score=66.49 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=80.7
Q ss_pred cccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccC
Q psy6631 427 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRD 506 (704)
Q Consensus 427 M~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~ 506 (704)
|........++.+..++.+.+... +.....|+|++ +++.|.++.+++...... ...+.+.|.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ 311 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDE-RVDSLYVVDRQ------------NKLVGVVDVESIKQARKK---AQGLQDVLIDD 311 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhc-CCceEEEEcCC------------CCEEEEEeHHHHHHHhhc---CCchhhhhccC
Confidence 444444566788899999999877 67788899877 789999998877533222 23578889999
Q ss_pred ceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 507 VKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 507 v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
++++.+|+++.|++..|. ....+ +||+|+ ++.+|.+++..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~g~i~~~~~~ 354 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVL-KAGIK-VPVVDEDQRLVGIVTRGSLV 354 (363)
T ss_pred CceECCCCcHHHHHHHHH-hCCCC-EEEECCCCcEEEEEEHHHHH
Confidence 999999999999999995 45566 888875 5667777776643
No 202
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.39 E-value=0.0043 Score=58.15 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=48.1
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..+++++|.+++..+.+++++.++.+.+.++ +...+||++++ +++|+|+..|++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~l~Vv~~~-------------~~~Gvit~~di~ 133 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEA-NISGLPVVDND-------------NIVGVITKTDIC 133 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHc-CCCEEEEEeCC-------------EEEEEEEHHHHh
Confidence 4579999999999999999999999999988 78899999754 799999998875
No 203
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.35 E-value=0.0046 Score=56.65 Aligned_cols=57 Identities=23% Similarity=0.123 Sum_probs=48.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+++++.++++.|.++ +...+||++++ ++++++|+|+..|++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~-~~~~~~V~~~~----------~~~~~~Gvit~~di~ 126 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLEN-DDSSVVVVTPD----------DDTKVVGILTKKDVL 126 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhC-CCCeEeEeccC----------CCCcEEEEEEhHhhh
Confidence 3568899999999999999999999999988 67889998642 227899999999875
No 204
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.33 E-value=0.0059 Score=54.26 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=47.4
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++++|.+++.++.+++++.++++.|.++ +...+||++++ +++|+|+..|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~~-------------~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREK-QIGRLPVVDDN-------------KLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHc-CCCeeeEeECC-------------EEEEEEEhHHhc
Confidence 358899999999999999999999999998 78899999754 799999999885
No 205
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.24 E-value=0.0052 Score=54.28 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=46.0
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+.++|.++..++.++++++++++.|.++ +...+||+| + ++++|+++..|+.
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vv~-~------------~~~iGvit~~dl~ 102 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKN-KTRWCPVVD-D------------GKFKGIVTLDSIL 102 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHc-CcceEEEEE-C------------CEEEEEEEHHHhh
Confidence 36778988899999999999999999988 788899997 4 5899999998875
No 206
>KOG1764|consensus
Probab=96.20 E-value=0.022 Score=63.26 Aligned_cols=107 Identities=10% Similarity=0.139 Sum_probs=81.5
Q ss_pred ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc---cc-cccc---
Q psy6631 430 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN---VY-VEDF--- 502 (704)
Q Consensus 430 ~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~---~~-V~dv--- 502 (704)
++.++..++++.+++++|.+. +.+++||||+. ++.+|.++..|+.....+..+. .. ++..
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~-~is~lpvV~~~------------g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~ 304 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSER-RISALPVVDEN------------GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSH 304 (381)
T ss_pred hheeecCCCcHHHHHHHHHhc-CcCcceEEcCC------------CceecceehhhhhhhhhcCccCccchhHHHHHhhh
Confidence 688899999999999999998 89999999987 6779999999998554433222 11 2111
Q ss_pred ---cccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHh
Q psy6631 503 ---MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRRE 550 (704)
Q Consensus 503 ---M~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~ 550 (704)
-...+.+.++++++.++.+.|. .++..-+-|+|+ +..+|.++..+..
T Consensus 305 ~~~~~~~vvtc~~~ssL~~vi~~lv-~~~vHRl~VVd~~~~l~GvvSLsDil 355 (381)
T KOG1764|consen 305 RPIRFEGVVTCRPTSTLAEVIDKLV-AHRVHRLWVVDEDGVLVGVISLSDIL 355 (381)
T ss_pred cccccCccEEEeecchHHHHHHHHH-hcCceEEEEEcCCCcEEEEeeHHHHH
Confidence 1234789999999999999995 466777777776 5667777777653
No 207
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.17 E-value=0.005 Score=55.74 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=48.5
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+++++|.+++.++.+++++.++++.+.++ +...+||+|++ ++++|+++..|++
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~vv~~~------------~~~~Gvit~~dll 120 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLEN-SISCLPVVDEN------------GQLIGIITWKDLL 120 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHc-CCCeEeEECCC------------CCEEEEEEHHHhh
Confidence 468899999999999999999999999987 77889999876 6899999988875
No 208
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.17 E-value=0.0097 Score=56.00 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=70.8
Q ss_pred CceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCC-
Q psy6631 506 DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIP- 583 (704)
Q Consensus 506 ~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~- 583 (704)
++.++.+++++.|+++.|. ..+...+||+|+ ++.+|.++..++..........+....-+.+.. ......
T Consensus 2 ~~~~v~~~~~l~ea~~~m~-~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~ 73 (133)
T cd04592 2 KYIKVSPTTTLKEALNLML-DEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQT-------NTCLVSS 73 (133)
T ss_pred CceEECCCCCHHHHHHHHH-HcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhccc-------ccccHHH
Confidence 5789999999999999994 455678898876 566888988886553321111100000000000 000000
Q ss_pred -CCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCC
Q psy6631 584 -RTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYT 629 (704)
Q Consensus 584 -~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g 629 (704)
.....+.++|+ ++.++.|++++.++...|...++..+ ||+|+.+
T Consensus 74 i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~l--PVvd~~~ 119 (133)
T cd04592 74 VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQL--PVVKRGV 119 (133)
T ss_pred HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcC--CEecCCc
Confidence 00001122344 67889999999999999999999887 9998764
No 209
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.11 E-value=0.0053 Score=54.68 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=47.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.++|.+++.++.+++++.++.+.|.++ +...+||+|+ ++++|+|+.+|++
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vv~~-------------~~~~Gvit~~di~ 112 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKA-KPKRYPVVDD-------------GKLVGQISRRDVL 112 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHh-CCCccCEEEC-------------CEEEEEEEHHHHh
Confidence 3468899999999999999999999999998 6788999975 4799999998875
No 210
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.09 E-value=0.0076 Score=53.54 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..+.++|.+++..+.+++++.++++.+.++ +....||++++ ++++|+++..|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~Vv~~~------------g~~~Gilt~~dl~ 110 (112)
T cd04624 57 TPVSEIMTRDLVTVDPDEPVAEAAKLMRKN-NIRHHLVVDKG------------GELVGVISIRDLV 110 (112)
T ss_pred cCHHHhccCCCEEECCCCcHHHHHHHHHHc-CccEEEEEcCC------------CcEEEEEEHHHhc
Confidence 358899999999999999999999999987 67889999876 7899999998875
No 211
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.08 E-value=0.0079 Score=55.54 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=47.3
Q ss_pred cccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 421 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 421 ~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.++.++|.+++.++.+++++.++++.|.+. +.+.+||+|+ ++++|+++..|++
T Consensus 78 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~V~~~-------------~~~iGvit~~dl~ 130 (132)
T cd04636 78 KKVEEIMTKKVITVDEDTTIEDVARIMSKK-NIKRLPVVDD-------------GKLVGIISRGDII 130 (132)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHHC-CCCeeEEEEC-------------CEEEEEEEHHHhh
Confidence 368899999999999999999999999988 7889999975 4899999998875
No 212
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.05 E-value=0.0071 Score=54.42 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=48.2
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
..+++++|.+++.++.++++++++++.|.++ +...+||++++ +++|+++.+|++.
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~-~~~~~~V~~~~-------------~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREH-RIGCLPVVEDG-------------RLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHc-CCCeEEEeeCC-------------EEEEEEEHHHhhc
Confidence 4568999999999999999999999999988 78899999754 7999999888753
No 213
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0054 Score=69.16 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=86.1
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHh----cCCCceeecccC-CCceEEeehHHHhhhcCCCcccccccCchhh
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE----NRSLRVFPLVES-SGKFEQMEIKRREERQRRPSRFEVTPAPDLL 568 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~----~~rl~Vvpvv~~-~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l 568 (704)
....+++..|+++..++.++.|+.++...+.+ .++...+-|+|. ++.+|.++.++ .+
T Consensus 129 y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~------------------Ll 190 (451)
T COG2239 129 YPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRD------------------LL 190 (451)
T ss_pred CChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHH------------------Hh
Confidence 34568899999999999999999999999964 344556666665 44566555554 22
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH-------HHH
Q psy6631 569 RGNPHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR-------IRM 640 (704)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr-------~r~ 640 (704)
..+| ..+..++|. .+....|++....+-..|.-.++-.+ ||||+.++++|++|- -..
T Consensus 191 ~a~~-------------~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~--PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 191 TAEP-------------DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAV--PVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cCCc-------------HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeec--ceECCCCceeeeeeHHHHHHHHHHH
Confidence 1111 012344555 55666777777666666666666554 999999999999997 556
Q ss_pred HHHHHhcccc
Q psy6631 641 AFEAIFHKSA 650 (704)
Q Consensus 641 a~e~~~~~~~ 650 (704)
|=||+.|-..
T Consensus 256 a~eDi~~~~G 265 (451)
T COG2239 256 ATEDILRMAG 265 (451)
T ss_pred HHHHHHHhcC
Confidence 7778888555
No 214
>PRK11573 hypothetical protein; Provisional
Probab=96.01 E-value=0.047 Score=61.43 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=74.9
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHhcCCCceeecccC--CCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--SGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~--~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+|+|++ ++..++.++++.|+.+.+.+ .+..-+||.++ ++.+|.+.-+|.........+.+.
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~-~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~--------- 254 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTH-SPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTK--------- 254 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHh-CCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCH---------
Confidence 34589999984 57889999999999999964 33334455433 556777766665322110000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+ ...+.+.+++...+.+++.+..+.|.-...+-. -|||.||...|+||.
T Consensus 255 --------------~--~l~~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~A--iVvDEyG~~~GiVTl 303 (413)
T PRK11573 255 --------------E--NMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVG--LVVDEYGDIQGLVTV 303 (413)
T ss_pred --------------H--HHHhhccCCeEeCCCCcHHHHHHHHHhcCCeEE--EEEecCCCeEEEeeH
Confidence 0 111233356667788899998888887666543 689999999999997
No 215
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0055 Score=62.35 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=84.4
Q ss_pred ccccccccccc--ceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~~--~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
..++|+|+|.+ ..++++.+.++.+.++.+.++ .|+.|||+.++. ..+.|++..+|++..-......
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iies-aHSRfPVi~edk-----------D~v~GIL~AKDLL~~~~~~~~~ 132 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIES-AHSRFPVISEDK-----------DHVEGILLAKDLLPFMRSDAEP 132 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHh-ccccCCcccCCc-----------hhhhhhhhHHHHHHHhcCCccc
Confidence 45789999985 478899999999999999998 899999997652 4799999999998643333233
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-C--CceEEeehH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-S--GKFEQMEIK 547 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~--~~~~~i~~~ 547 (704)
-.++++.+ +...|.+.-.+.-.++-+ +.+|-...-|+|+ + ..+.+++|.
T Consensus 133 F~i~~lLR-Pav~VPESKrvd~lLkeF-R~~RnHMAIViDEfGgVsGLVTIEDi 184 (293)
T COG4535 133 FDIKELLR-PAVVVPESKRVDRLLKEF-RSQRNHMAIVIDEFGGVSGLVTIEDI 184 (293)
T ss_pred ccHHHhcc-cceecccchhHHHHHHHH-HhhcCceEEEEeccCCeeeeEEHHHH
Confidence 33444444 466778877788788887 5667767777776 2 335555554
No 216
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.99 E-value=0.0046 Score=56.72 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=45.3
Q ss_pred ccccccccccceEEe------cCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYI------WNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v------~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..+++++|+++...+ .+++++.++++.|.++ +.+.+||+|++ +++++|+|+..|++
T Consensus 63 ~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~-~~~~lpVvd~~-----------~~~~~G~it~~di~ 124 (126)
T cd04640 63 ELTVADVMTPKEDLKALDLEELENASVGDVVETLKAS-GRQHALVVDRE-----------HHQIRGIISTSDIA 124 (126)
T ss_pred heEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHC-CCceEEEEECC-----------CCEEEEEEeHHHHh
Confidence 456899998765443 3689999999999988 78899999863 15899999998875
No 217
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=95.87 E-value=0.014 Score=51.93 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=43.5
Q ss_pred ccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 426 FMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 426 iM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
+|.+++.++++++++.++.+.|.++ +...+||++ + ++++|+|+++|+.
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~-~~~~~pVv~-~------------~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKL-GLRHLLVVD-E------------GRLVGIITRKDLL 103 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHc-CCCEEEEEE-C------------CeEEEEEEhhhhh
Confidence 8989999999999999999999988 789999995 4 5899999999885
No 218
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.27 E-value=0.024 Score=49.92 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=45.5
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.++++|.+++.++.++++++++.+.+.++ +...+||+|+ ++++|+++..|++
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-~~~~~~Vvd~-------------~~~~G~it~~d~~ 104 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVEN-NIRRVPVVDD-------------GKLVGIVTVADIV 104 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHc-CCCEEEEEEC-------------CEEEEEEEHHHhh
Confidence 46788988999999999999999999988 7789999984 4799999988874
No 219
>KOG0474|consensus
Probab=95.04 E-value=0.0091 Score=68.12 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=84.0
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHh--cCCCceeecccCC---CceEEeehHHHhhhc-------CCCccccc
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE--NRSLRVFPLVESS---GKFEQMEIKRREERQ-------RRPSRFEV 561 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~---~~~~~i~~~~~~~~~-------~~~sr~~v 561 (704)
..+.+++|+|++++.+++.-+.+..+.+.+.. .+..||++-.+.+ +..+-+-|+++..+. .++++.+.
T Consensus 579 mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~ 658 (762)
T KOG0474|consen 579 MRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL 658 (762)
T ss_pred hhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence 35678999999999999999999999999965 4445555444432 222333333332211 11111111
Q ss_pred ccCchhhcCCCCCC---C-CCCCC--CCCC-C---CCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCC
Q psy6631 562 TPAPDLLRGNPHGV---S-ASSDN--IPRT-E---NLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTT 630 (704)
Q Consensus 562 ~~~~~~l~~~~~~~---~-~~~~~--~~~~-~---~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~ 630 (704)
.. .+.+.-++ | ++.++ +..+ . -+....|+ .+.+..+.+|+.|+-.+|...+++|+ -||++..+
T Consensus 659 ~~----~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhL--lVv~~~~~ 732 (762)
T KOG0474|consen 659 PV----RRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHL--LVVPKTNR 732 (762)
T ss_pred ch----hhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeE--EEecCCCc
Confidence 11 11110000 0 00010 1100 0 12334555 88899999999999999999999998 79999999
Q ss_pred cchHHHH
Q psy6631 631 VTGAESR 637 (704)
Q Consensus 631 l~G~vtr 637 (704)
++|++||
T Consensus 733 ~~gilTR 739 (762)
T KOG0474|consen 733 VVGILTR 739 (762)
T ss_pred eeEEEeh
Confidence 9999999
No 220
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.0089 Score=64.68 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccc--cCceEEeCCCCHHH
Q psy6631 441 RDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMV--RDVKYIWNNMTYRD 518 (704)
Q Consensus 441 ~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~--~~v~tV~~d~sl~e 518 (704)
+|+.-+.... ++..|+...+ + ..|.|++..+ +.+|+|+|+ .++..+.-|++.++
T Consensus 168 EElR~~v~~~--~~e~~~~~~~----------r-dmL~gvLDLe-----------~~tV~DIMvpR~~i~~id~d~~~e~ 223 (423)
T COG4536 168 EELRTAVNES--GSEGSVNKID----------R-DMLLGVLDLE-----------NLTVSDIMVPRNEIIGIDIDDPWEE 223 (423)
T ss_pred HHHHHHHHHh--hccccccccc----------H-HHHhcccccc-----------cceeeeeeccccceeeecCCCCHHH
Confidence 4555555544 5667776533 1 3578877543 459999997 45788999999999
Q ss_pred HHHHhHh--cCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcCCCCCCCCCCCCCCCCCCCCCCcccCc
Q psy6631 519 LKNLLKE--NRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGPQFCPV 596 (704)
Q Consensus 519 a~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 596 (704)
+.+.+.. ..|+|++-..- ++.+|.+--++..+......-+. + ....+.-.++
T Consensus 224 iv~ql~~s~HtRiplyr~~~-DnIiGvlh~r~llr~l~e~~~~~------------------------k-~d~~~~a~ep 277 (423)
T COG4536 224 IVRQLLHSPHTRIPLYRDDL-DNIIGVLHVRDLLRLLNEKNEFT------------------------K-EDILRAADEP 277 (423)
T ss_pred HHHHHhhCCCCceeeecCCh-hHhhhhhhHHHHHHHhhccCccc------------------------H-hHHHHHhcCC
Confidence 9988866 56665554432 22445333333222221110000 0 0111111244
Q ss_pred cccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 597 FGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 597 ~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
|-....+++..-.+.|....-+-- -|||.||.+.|+||-
T Consensus 278 yFVPe~Tpl~~QL~~F~~~k~hia--lVVDEYG~i~GLVTL 316 (423)
T COG4536 278 YFVPEGTPLSDQLVAFQRNKKHIA--LVVDEYGDIQGLVTL 316 (423)
T ss_pred eecCCCCcHHHHHHHHHHhcceEE--EEEeccCcEEeeeeH
Confidence 555555666656566655222211 499999999999997
No 221
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=94.95 E-value=0.027 Score=41.16 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=38.0
Q ss_pred eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 431 VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 431 v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
+.++.+++++.++.+.+.++ +...+||++++ ++++|+++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~------------~~~~g~i~~~~l~ 45 (49)
T smart00116 2 VVTVSPDTTLEEALELLREH-GIRRLPVVDEE------------GRLVGIVTRRDII 45 (49)
T ss_pred ceEecCCCcHHHHHHHHHHh-CCCcccEECCC------------CeEEEEEEHHHHH
Confidence 46789999999999999987 78999999876 6899999877763
No 222
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.72 E-value=0.042 Score=51.75 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=47.5
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
...+.++|.+++.++.+++++.++.+.|.++ +...+||++++ +++|+++..|++
T Consensus 88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-~~~~~~Vv~~~-------------~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTKKVITISPDASIEDAAELMVRH-KIKRLPVVEDG-------------RLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCCCCeEECCCCcHHHHHHHHHHc-CCCEEEEEECC-------------EEEEEEEHHHhh
Confidence 4568899999999999999999999999988 78889999754 799999988875
No 223
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=93.62 E-value=0.036 Score=62.61 Aligned_cols=113 Identities=16% Similarity=0.068 Sum_probs=75.2
Q ss_pred ccccccccccc--CceEEeCCCCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHhhhcCCCcccccccCchhhcC
Q psy6631 495 YNVYVEDFMVR--DVKYIWNNMTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRG 570 (704)
Q Consensus 495 ~~~~V~dvM~~--~v~tV~~d~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~~~~~~~sr~~v~~~~~~l~~ 570 (704)
.+.+|+++|++ ++..+..+++++++.+.+.+ ..|.||+. .+.+..+|.+.-+++....
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~----------------- 265 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRAL----------------- 265 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHH-----------------
Confidence 45689999984 57778889999999999965 45666666 3335667766555543322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 571 NPHGVSASSDNIPRTENLDGPQFCPVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
...+. .. .......+++...+.+++.++...|....-+-. -|+|.||...|+||.
T Consensus 266 -~~~~~--~~-------~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmA--iVvDEyG~~~GlVTl 320 (429)
T COG1253 266 -LDGQS--DL-------DLRVLVRPPLFVPETLSLSDLLEEFREERTHMA--IVVDEYGGVEGLVTL 320 (429)
T ss_pred -hcCcc--cc-------chhhcccCCeEecCCCcHHHHHHHHHHhCCeEE--EEEEcCCCeEEEeEH
Confidence 11110 00 001111256666788999999888887666543 699999999999997
No 224
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.87 E-value=0.14 Score=46.46 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=42.7
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccC-CCceEEeehHHH
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SGKFEQMEIKRR 549 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~-~~~~~~i~~~~~ 549 (704)
.+|.|+|.+++.++.+++++.++++.|. ..+...+||+++ ++.+|.++..++
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~-~~~~~~lpVvd~~~~l~Givt~~dl 110 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMH-EHNIRTLPVVDDDGTPAGIITLLDL 110 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHH-HcCCCEEEEECCCCeEEEEEEHHHh
Confidence 5689999999999999999999999994 466778999976 455777776654
No 225
>KOG2550|consensus
Probab=91.03 E-value=0.16 Score=55.63 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=51.7
Q ss_pred ccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCc
Q psy6631 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSS 491 (704)
Q Consensus 420 ~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~ 491 (704)
..-+.|+|+++.++.+.+.+++++-++|+++ +.--+||||++ +++|-+|++.|+.++.+
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~-kkGkl~iv~~~------------gelva~~~rtDl~k~~~ 228 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKI-KKGKLPVVDDK------------GELVAMLSRTDLMKNRD 228 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhh-hcCCcceeccC------------CceeeeeehhhhhhhcC
Confidence 3458999999999999999999999999998 56679999988 89999999999976543
No 226
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=90.42 E-value=0.21 Score=55.30 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=46.3
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++.|.+++.++.+++++++++..+.++ .+. +||||++ ++++|+|++.+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~------------~~~~g~i~~~~~~~ 355 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKA-GIK-VPVVDED------------QRLVGIVTRGSLVD 355 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhC-CCC-EEEECCC------------CcEEEEEEHHHHHH
Confidence 47788888889999999999999999987 566 9999988 89999999887753
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=85.45 E-value=0.61 Score=52.33 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=45.3
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLL 488 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~ 488 (704)
.+++.|.++..++.+++++++++..+.++ . ..+||||++ ++++|+|++.+++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~------------~~~~g~~~~~~~~~ 390 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQA-P-CAVPVVDED------------QQYVGIISKGMLLR 390 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhC-C-CcEEEECCC------------CcEEEEEEHHHHHH
Confidence 47777888889999999999999999876 4 449999987 89999999888754
No 228
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=83.69 E-value=0.3 Score=35.31 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=31.8
Q ss_pred cccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 597 FGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 597 ~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
..+.|..++.++.+.|.....+.+ |+++++++++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~g~i~~ 41 (49)
T smart00116 3 VTVSPDTTLEEALELLREHGIRRL--PVVDEEGRLVGIVTR 41 (49)
T ss_pred eEecCCCcHHHHHHHHHHhCCCcc--cEECCCCeEEEEEEH
Confidence 345677888888888877777776 999999999999987
No 229
>KOG0475|consensus
Probab=82.08 E-value=2.3 Score=49.43 Aligned_cols=134 Identities=11% Similarity=0.007 Sum_probs=78.2
Q ss_pred ccccccccC--ceEEeCC-CCHHHHHHHhHh--cCCCceeecccCCCceEEeehHHHhh-hcCCCcccccccCchhhcCC
Q psy6631 498 YVEDFMVRD--VKYIWNN-MTYRDLKNLLKE--NRSLRVFPLVESSGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGN 571 (704)
Q Consensus 498 ~V~dvM~~~--v~tV~~d-~sl~ea~~~m~~--~~rl~Vvpvv~~~~~~~~i~~~~~~~-~~~~~sr~~v~~~~~~l~~~ 571 (704)
++.+.|..+ ..++..+ ++++|+..+|.. ....||+-..|++..+|-+.++++.- .....+.++-...-+..-..
T Consensus 547 ~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~ 626 (696)
T KOG0475|consen 547 PVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFND 626 (696)
T ss_pred hhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCC
Confidence 343444433 4556665 899999999965 34455555556677788888665532 11111111111111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCccc-CccccCCCchhhhcccccccccCCCCcCcccCCCCCcchHHHH
Q psy6631 572 PHGVSASSDNIPRTENLDGPQFC-PVFGCQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESR 637 (704)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~p~~si~k~~~~~~~~~~~~~~~Pvv~~~g~l~G~vtr 637 (704)
+.+...+..+.+ -.-.++++ .+++.+-++|..-..+.|...++++. .|++.|++.|+||.
T Consensus 627 ~~~~~~~~~~~~---~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~---~v~~~G~l~Giitk 687 (696)
T KOG0475|consen 627 PSPSAVAGIPSR---LDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQI---LVTKNGILLGIITK 687 (696)
T ss_pred CCccccCCCCCC---cCceeeccCCcccccccCcHHHHHHHHHhhCceEE---EEccCCeeEeeeeh
Confidence 101001111111 12446676 88888888999889999998898885 89999999999987
No 230
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.86 E-value=2.6 Score=45.61 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=68.5
Q ss_pred cccccccccccc--eEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccc
Q psy6631 419 YNVYVEDFMVRD--VKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYN 496 (704)
Q Consensus 419 ~~~~V~diM~~~--v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~ 496 (704)
.-++++++|.+. ...-.+...-..+.+.+.+. ....+-+++.. ++.+|++...+....
T Consensus 272 ~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~------------~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 272 RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDE-GREYGYAVDRG------------NKFVGVVSIDSLVKA------- 331 (386)
T ss_pred heeeHHHhhcccccccccccccccchhhhhhhhc-cchhhHHHhcc------------CceeeEEeccchhcc-------
Confidence 346788888742 11112223333556666655 44445555544 679999987776432
Q ss_pred cccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHhh
Q psy6631 497 VYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREE 551 (704)
Q Consensus 497 ~~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~~ 551 (704)
.+.+++.++.+|+++.+...... ....|+.-+.|+++.+|.+++.....
T Consensus 332 -----~~~~~~~~v~~d~~~~~~~~~~~-~~~~p~aVvde~~r~vG~i~~~~vl~ 380 (386)
T COG4175 332 -----ALIDDVLTVDADTPLSEILARIR-QAPCPVAVVDEDGRYVGIISRGELLE 380 (386)
T ss_pred -----cccccccccCccchHHHHHHHHh-cCCCceeEEcCCCcEEEEecHHHHHH
Confidence 46677899999999999998884 45555555555677788887776544
No 231
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=76.03 E-value=5.2 Score=44.67 Aligned_cols=106 Identities=9% Similarity=-0.089 Sum_probs=65.8
Q ss_pred ccccccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCccccccc
Q psy6631 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNV 497 (704)
Q Consensus 418 l~~~~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~ 497 (704)
..-++++++|.+.......+.. .++ +++ ......|+|+ |+++..+....... ....
T Consensus 271 ~~~l~a~~~m~~~~~~~~~~~~--~~~---~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~ 326 (382)
T TIGR03415 271 LNVLTARSLMRPLTDLEHVDGG--WCV---SDR-RDTWLFTIDK-----------------QVRRRDAKLPVQAW-AAEQ 326 (382)
T ss_pred ccceeHHHHhcccccccccCcc--hhh---hhc-ccceeEeecc-----------------ceecccchHhHhhc-cccc
Confidence 3457899999544444343322 332 234 5677778863 45655554322111 1122
Q ss_pred ccccccccCceEEeCCCCHHHHHHHhHhcCCCceeecccCCCceEEeehHHHh
Q psy6631 498 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRRE 550 (704)
Q Consensus 498 ~V~dvM~~~v~tV~~d~sl~ea~~~m~~~~rl~Vvpvv~~~~~~~~i~~~~~~ 550 (704)
.+.+ +.+++.++++|+++.|+...+. ....| ++|+|+++.+|++++..+.
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~~~~~g~~~~~~~~ 376 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARH-RTGGA-ILLVENGRIVGVIGDDNIY 376 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHh-cCCCC-eEEeeCCeEEEEEeHHHHH
Confidence 4666 7778999999999999999884 34455 5566667778888777653
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=63.31 E-value=1.7 Score=44.87 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCCCCCcccccccccccccccC--ceEEeCC
Q psy6631 436 NNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRD--VKYIWNN 513 (704)
Q Consensus 436 ~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll~~~~~~~~~~~V~dvM~~~--v~tV~~d 513 (704)
+..+.+|+++++++. .++. ++|.+.- ..+-|++.-.|+ .|+|+|.+. ..+++.+
T Consensus 30 Epknr~eLl~liRds-e~n~--LiD~dt~----------~mlEGvm~iadl-----------~vrDiMIPRSQM~~l~~~ 85 (293)
T COG4535 30 EPKNREELLELIRDS-EQNE--LIDADTL----------DMLEGVMDIADL-----------RVRDIMIPRSQMITLKRN 85 (293)
T ss_pred CCcCHHHHHHHHHHh-hhcc--ccChhHH----------HHHHHHHHHHHh-----------hHhhhcccHHHheecccc
Confidence 455778999999987 4444 3554410 235566554444 789999744 6889999
Q ss_pred CCHHHHHHHhHh--cCCCceee
Q psy6631 514 MTYRDLKNLLKE--NRSLRVFP 533 (704)
Q Consensus 514 ~sl~ea~~~m~~--~~rl~Vvp 533 (704)
+++.+....+.+ ..|.||+-
T Consensus 86 ~~l~~~l~~iiesaHSRfPVi~ 107 (293)
T COG4535 86 QTLDECLDVIIESAHSRFPVIS 107 (293)
T ss_pred CCHHHHHHHHHHhccccCCccc
Confidence 999999999976 45555543
No 233
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=48.31 E-value=1.9e+02 Score=34.70 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=45.7
Q ss_pred ccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy6631 105 LFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYV 184 (704)
Q Consensus 105 LFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~ 184 (704)
+|.+.+....|+. ..+|++++..+.+.+-|++..+..+. +..+| +++ ..+-..-.+.++++|-++..+|-...
T Consensus 205 ~fGipv~~~~Y~~-sViPiil~v~~~s~iEk~l~K~iP~~--l~~i~-~P~---ltlli~~pl~l~viGPig~~i~~~l~ 277 (627)
T PRK09824 205 FLGIPVTLLNYSS-SVIPIIFSAWLCSILERRLNAWLPSA--IKNFF-TPL---LCLMVIVPLTFLLIGPLATWLSELLA 277 (627)
T ss_pred ecceeeeecCCcc-chHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHH---HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3666665544443 36899999999999999987653221 00111 111 01111233456778888888777666
Q ss_pred HHHHHH
Q psy6631 185 WSHRQY 190 (704)
Q Consensus 185 ~~~~~~ 190 (704)
..+.|.
T Consensus 278 ~~i~~l 283 (627)
T PRK09824 278 AGYQWL 283 (627)
T ss_pred HHHHHH
Confidence 555543
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=44.42 E-value=15 Score=41.05 Aligned_cols=50 Identities=16% Similarity=0.001 Sum_probs=40.1
Q ss_pred ccccccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 422 ~V~diM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+++ +.++..+++++++++|++....++ ...+||+|+ ++++|+|++.+++
T Consensus 327 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~-------------~~~~g~~~~~~~~ 376 (382)
T TIGR03415 327 EVES-LEAAPTVINPDTLMRDVLAARHRT--GGAILLVEN-------------GRIVGVIGDDNIY 376 (382)
T ss_pred chhh-hcccCcccCCCCcHHHHHHHHhcC--CCCeEEeeC-------------CeEEEEEeHHHHH
Confidence 3555 667788999999999999987765 366899874 5899999987775
No 235
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=39.90 E-value=3.5e+02 Score=32.02 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy6631 209 FLYPGIVVLLATSVS 223 (704)
Q Consensus 209 ~l~p~l~gllvg~l~ 223 (704)
++.|++..++++.+.
T Consensus 350 liiPllt~li~~~l~ 364 (563)
T PRK10712 350 LIIPLISSLVVGLAM 364 (563)
T ss_pred eehhHHHHHHHHHHH
Confidence 557887777777554
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=31.83 E-value=31 Score=37.61 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=40.5
Q ss_pred ccccceEEecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 426 FMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 426 iM~~~v~~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
.+..++..+.+++.+.+.+....+. ...+||||++ ++++|+|++.+++
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~--~~p~aVvde~------------~r~vG~i~~~~vl 379 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQA--PCPVAVVDED------------GRYVGIISRGELL 379 (386)
T ss_pred cccccccccCccchHHHHHHHHhcC--CCceeEEcCC------------CcEEEEecHHHHH
Confidence 5667888899999999998887765 4679999988 8999999987764
No 237
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=31.74 E-value=9.7e+02 Score=28.73 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy6631 118 RNYWRGFFTAVCGATVFRLLAVWF 141 (704)
Q Consensus 118 ~~~~~~f~aav~a~~v~~~l~~~~ 141 (704)
..+++++++..++.++.+++..+.
T Consensus 379 sgflg~Ii~~~l~gyv~~~l~k~i 402 (631)
T PRK09765 379 SGFLGAVVGGLIAGYLMRWVKNHL 402 (631)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHC
Confidence 456788888888888888776654
No 238
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=30.28 E-value=3.4e+02 Score=25.11 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy6631 373 HIIPVMIAVLISNAVAAL 390 (704)
Q Consensus 373 ~~lPimia~~is~~va~~ 390 (704)
.+.|+++.+++-..++-.
T Consensus 92 ~~~pVl~g~~il~~~a~~ 109 (120)
T PF04982_consen 92 VLIPVLLGSLILVVVALL 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888877776666643
No 239
>KOG4267|consensus
Probab=30.04 E-value=1.2e+02 Score=27.89 Aligned_cols=44 Identities=27% Similarity=0.189 Sum_probs=30.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCccCCCccCCcchHHHHHHHHHHHHHHhh
Q psy6631 303 IPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVT 355 (704)
Q Consensus 303 ~Psl~IGA~~G~~~G~~~~~~~p~~~~~~~~~~~~~p~~yAlvGmaAf~aav~ 355 (704)
.|||.-|..+|.++|..-...+-+. -.-..+++.|.+++++++.
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~---------~~~~~~~l~~~s~~L~gvm 71 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDK---------KGGSLVALGGTSAALLGVM 71 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCC---------CcCchhHHHHHHHHHHHHH
Confidence 6999999999999998876654331 1134566666666666654
No 240
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.36 E-value=81 Score=29.55 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6631 167 TVFALIGVVCGFGGAGY 183 (704)
Q Consensus 167 ~~~illGi~~Gl~g~lF 183 (704)
...|++|++||++|..+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46788999999998765
No 241
>KOG4112|consensus
Probab=28.04 E-value=1.2e+02 Score=26.97 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy6631 306 FKIGAAFGRMIGEIIFLR 323 (704)
Q Consensus 306 l~IGA~~G~~~G~~~~~~ 323 (704)
+.|||..|.++|-..+.+
T Consensus 32 lti~aiVg~i~Gf~~Qql 49 (101)
T KOG4112|consen 32 LTIGAIVGFIYGFAQQQL 49 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367889999988887654
No 242
>KOG2118|consensus
Probab=27.77 E-value=55 Score=37.95 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=64.4
Q ss_pred cccccccccccc--ceEEecCCCCHH-HHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC-CCCccc
Q psy6631 418 IYNVYVEDFMVR--DVKYIWNNMTYR-DLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL-LPSSSG 493 (704)
Q Consensus 418 l~~~~V~diM~~--~v~~v~~~~tl~-ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll-~~~~~~ 493 (704)
+....++|+|++ ++..+..+..+. +.+....++ +++.+||.+.+ ...++.|.+....+. ......
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~-g~sripv~~~~----------~~~~i~~~L~~~~~~~~~~~~~ 269 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKH-GYSRIPVYEQE----------PKNKIGGLLVMNLLRLLQVEVP 269 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhc-CcceeeeccCc----------ccchhhHHHHhhhhhhhccccc
Confidence 445679999985 455566677766 444444556 89999999876 212333333222221 111124
Q ss_pred ccccccccccccCceEEeCCCCHHHHHHHhHh
Q psy6631 494 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE 525 (704)
Q Consensus 494 ~~~~~V~dvM~~~v~tV~~d~sl~ea~~~m~~ 525 (704)
....++.++|.+..+-+.++++..+..+.+..
T Consensus 270 ~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~ 301 (498)
T KOG2118|consen 270 LEPLPVSESALLRLPLVPENMPLLDLLNEFQK 301 (498)
T ss_pred cccccchhhhccccccCCCcccHHHHHHHHhh
Confidence 45678899999999999999999999999943
No 243
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=27.25 E-value=45 Score=35.43 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=35.7
Q ss_pred ccccccccccceE----EecCCCCHHHHHHHHHhcCCccEEEeecCccccccCCCCcCCeeEEEeecCCCCC
Q psy6631 420 NVYVEDFMVRDVK----YIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDL 487 (704)
Q Consensus 420 ~~~V~diM~~~v~----~v~~~~tl~ea~~~l~~~~~~~~~PVVd~~~~~~~~p~~~~~~~LvG~Is~~dll 487 (704)
..++.|.|.+... .+.....-++++..+... +...+||||++ ++++|.|++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~-~~~~~~Vvd~~------------g~~~G~vt~~~l~ 306 (309)
T COG1125 248 LVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR-GRSVLPVVDED------------GRPLGTVTRADLL 306 (309)
T ss_pred hhhHHHhhcccccccCCccccchhhHHHHHHHHhc-CCceeEEECCC------------CcEeeEEEHHHHh
Confidence 4556666654321 233344444555555555 56889999988 8999999988774
No 244
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=26.33 E-value=1.4e+02 Score=36.56 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=31.1
Q ss_pred hhcccccccccceeeeccccchHHHHHHHHHHHHHHHHHHHH
Q psy6631 96 LKGALYKGVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLL 137 (704)
Q Consensus 96 aF~APIgGvLFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l 137 (704)
.|....-..+|-+=|+....-. .+||+++||+++.+++..+
T Consensus 419 ~~~~~ni~mvFllgVlv~av~~-g~~pa~~aailsvl~fNyF 459 (890)
T COG2205 419 FFDLANIVMLFLLGVLVVAVLT-GRWPAVLAALLSVLVFNYF 459 (890)
T ss_pred hccchhHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHhhe
Confidence 5677777788888777644433 6899999999998888764
No 245
>KOG1278|consensus
Probab=23.62 E-value=2.6e+02 Score=32.75 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy6631 165 ELTVFALIGVVCGFGGAGYVWS 186 (704)
Q Consensus 165 el~~~illGi~~Gl~g~lF~~~ 186 (704)
.+.+|+++|+++|.+++-.-|.
T Consensus 368 ~~~l~v~~G~~agY~s~rlyk~ 389 (628)
T KOG1278|consen 368 MVLLFVFMGFVAGYVSARLYKT 389 (628)
T ss_pred HHHHHHHHHHhhhhhhhhhHhh
Confidence 5778999999999998855443
No 246
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=22.95 E-value=5.7e+02 Score=30.64 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHHHH
Q psy6631 207 NRFLYPGIVVLLATSVS 223 (704)
Q Consensus 207 ~~~l~p~l~gllvg~l~ 223 (704)
+-++.|++..++++.+.
T Consensus 413 ~~~~~Pllt~li~~~l~ 429 (631)
T PRK09765 413 TFYLYPVLGTLGAGSLM 429 (631)
T ss_pred CEEeehHHHHHHHHHHH
Confidence 34666777666666553
No 247
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=22.39 E-value=1.2e+03 Score=26.84 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=43.4
Q ss_pred ccceeeeccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy6631 105 LFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGFGGAGYV 184 (704)
Q Consensus 105 LFalEv~~~~~~~~~~~~~f~aav~a~~v~~~l~~~~~~~~~~~~~F~~~~~~~~~~~~~el~~~illGi~~Gl~g~lF~ 184 (704)
+|.+-+....|+ .+.+|.+++..+.+.+-|++..+..+ .+..+|. ++ ..+-..-...++++|-++..+|-...
T Consensus 207 ~~Gipi~~~~Y~-ssViPiil~v~~~s~vek~~~K~~P~--~l~~i~~-P~---ltlli~~pl~l~viGPig~~i~~~i~ 279 (472)
T PRK09796 207 FALIPVTAVKYT-YTVIPALVMTWCLSYIERWVDRITPA--VTKNFLK-PM---LIVLIAAPLAILLIGPIGIWIGSAIS 279 (472)
T ss_pred ecCceeeecCCC-cchHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHH-HH---HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444433344 34789999999999999998765321 1111111 11 01112234456777888887777666
Q ss_pred HHHHH
Q psy6631 185 WSHRQ 189 (704)
Q Consensus 185 ~~~~~ 189 (704)
....|
T Consensus 280 ~~i~~ 284 (472)
T PRK09796 280 ALVYT 284 (472)
T ss_pred HHHHH
Confidence 55443
No 248
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=21.67 E-value=1.9e+02 Score=35.60 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=7.9
Q ss_pred cchhhHHHHHHH
Q psy6631 302 FIPVFKIGAAFG 313 (704)
Q Consensus 302 F~Psl~IGA~~G 313 (704)
+..++.+||++.
T Consensus 130 ~~~ALLLGAILA 141 (810)
T TIGR00844 130 FPASLLMGACIT 141 (810)
T ss_pred HHHHHHHHhhhc
Confidence 556777777654
No 249
>COG4129 Predicted membrane protein [Function unknown]
Probab=21.38 E-value=5.5e+02 Score=28.26 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=25.8
Q ss_pred HHHHHHHhCCc----hhHHHHHHHHHHHHHHHhhcCCChHHHHHHHh
Q psy6631 361 SVIMFEMTGQI----THIIPVMIAVLISNAVAALLQPSLYDSIILIK 403 (704)
Q Consensus 361 ~viv~ElTG~~----~~~lPimia~~is~~va~~l~~siy~~~l~~r 403 (704)
.-++.+.+++. .-++-+++.+.+|..+.-.+-++=|+.....+
T Consensus 113 ~~ii~~~~~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~ 159 (332)
T COG4129 113 LHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPDYELKLYRA 159 (332)
T ss_pred HHHHHHcccchhHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 34666666643 34567788888888877766443355444444
Done!