RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6631
(704 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 323 bits (829), Expect = e-101
Identities = 99/362 (27%), Positives = 180/362 (49%), Gaps = 44/362 (12%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GVL+SIE ++ ++ +W+G +A+ GA V+ Y + AF TNF
Sbjct: 177 GVLYSIETIASFYLVQAFWKGVLSALSGAIVYE----LLYTTPLVEAFEGTNFDA-SDVS 231
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
+ ++A++G + G GA ++ R R+ + NR+ G+V L A+++
Sbjct: 232 RTQTLLYAILGALMGVLGALFIRCVRSIYELRMRH-----YPGTNRYFLVGVVALFASAL 286
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
+P L L+ ++ LF + + + L
Sbjct: 287 QYPFRLFA-----LDPRATINDLFKAVPLYQT----------------DHFGWTELILMP 325
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ +I ++ +P+P+G F+P F IGA FGR+ GE++ + F + I PG Y
Sbjct: 326 IIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIV---------PGSY 376
Query: 343 ATVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILI 402
A VGAAAF+ VT +S +VI+FE+TGQI H++PV+I+VL++ V SLY++++L+
Sbjct: 377 AVVGAAAFTAGVTRALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLM 436
Query: 403 KKLPYLPDLLPSSSGIYNVYVEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 460
K LPY+P L S + + M + +++ + + +K +L++ + VFP+++
Sbjct: 437 KHLPYMPILRRDRS--PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID 494
Query: 461 SS 462
++
Sbjct: 495 AN 496
Score = 76.7 bits (189), Expect = 1e-14
Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 463 VAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFM--VRDVKYIWNNMTYRDLK 520
V SLY++++L+K LPY+P L S + + M + +++ + + +K
Sbjct: 421 VGNAFNRSLYETLVLMKHLPYMPILRRDRS--PEMTAREIMHPIEGEPHLFPDSEPQHIK 478
Query: 521 NLLKENRSLRVFPLVESSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSASSD 580
+L++ + VFP+++++G I R+E R E P P + A+
Sbjct: 479 GILEKFPNRLVFPVIDANGYLLGA-ISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADL 537
Query: 581 NIPRTENLDG-PQFCPVFGCQPKKSILKKTNSFSL-KNFSPMLTPNVTPYTTV 631
+ +D P + ++L+ T+S + + SP++ + + +
Sbjct: 538 SENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQL 590
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 107 bits (269), Expect = 8e-25
Identities = 49/300 (16%), Positives = 94/300 (31%), Gaps = 48/300 (16%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G+LF IE + R G + ++ F +E + +
Sbjct: 196 GILFIIEE--MRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSD-----AP 248
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
L ++ ++G++ G G + + +++ L G + L
Sbjct: 249 LNTLWLYLILGIIFGIFGPIFNKW---VLGMQDLLHRVHGGNITKWVLMGGAIGGL---- 301
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
GL ++A T G + T L
Sbjct: 302 ---CGLLGFVAPA--------------TSGGGFNLIPI-------ATAGNFSMGMLVFIF 337
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ I +++ + P G F P+ +G G G + FP + G +
Sbjct: 338 VARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQ--------YHLEAGTF 389
Query: 343 ATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYDSII 400
A G A A ++ +++ EMT I+P++I L + +A LY +I+
Sbjct: 390 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAIL 449
Score = 33.9 bits (78), Expect = 0.20
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 17/113 (15%)
Query: 287 IFSIIASTIPVPSGSFI----PVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ G + P +IG GRM+ + R +A G
Sbjct: 129 PVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD--IFRLKGDEARHTLLA----TGA 182
Query: 343 ATVGAAAF----SGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALL 391
A AAAF +G + + + + + I V I V++S + +
Sbjct: 183 AAGLAAAFNAPLAGILF---IIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF 232
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 107 bits (268), Expect = 1e-24
Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 51/300 (17%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
GV E ++ R+ + + + G + ++ + + +
Sbjct: 191 GVALIGEE--MHPRFRSQTLAYHSLLFGCVMATIILRMIRGQSAIISLTEFKR-----VP 243
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
L +F ++G++ G G + + ++ K + G ++ + S+
Sbjct: 244 LDSLWMFIILGILFGVMGYTFNRG---LFKVLDWFDRLPPLATKWKGFLLGSIIGI-LSL 299
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
+ + F+ F +L
Sbjct: 300 FPLPLTD-------GGDNAVLWAFN------SQSH-----------------FSTLILVF 329
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
++ ++I G F P+ I + + L FP P
Sbjct: 330 CGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQ--------IPEPAVM 381
Query: 343 ATVGAAAFSGAVTHT-ISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYDSII 400
A G A A ++ ++ EMT I+P+++ L+++ VA L +Y ++
Sbjct: 382 AIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLL 441
Score = 34.3 bits (79), Expect = 0.15
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 20/114 (17%)
Query: 287 IFSIIASTIPVPSGSFI----PVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
++ + + +G P ++G + G+M G + + +I G
Sbjct: 125 PIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGG--WFKATQENQRI-----LIAVG- 176
Query: 343 ATVG-AAAF----SGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALL 391
A G A AF +G + Q ++ +++ + ++
Sbjct: 177 AGAGLATAFNAPLAGVAL---IGEEMHPRFRSQTLAYHSLLFGCVMATIILRMI 227
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 88.2 bits (217), Expect = 1e-19
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 20/225 (8%)
Query: 485 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQM 544
P+L SS+ YN+ V D MVRDV I + TY DL ++L++ + L+ FP V++ +
Sbjct: 1 PELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTK-LKFFPFVDTPDTNTLL 59
Query: 545 EIKRREE------RQRRPSRFEVTPAPDLLRGNPHGVSASSDNIPRTENLDGPQFCPVFG 598
R E R+ R + A + +G + +S + G
Sbjct: 60 GSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEG 119
Query: 599 CQPKKSILKKTNSFSLKNFSPMLTPNVTPYTTVTGAESRIRMAFEAIFHKSATLQDANPD 658
Q + K + + SP+ T + + + + + F + TL++
Sbjct: 120 QQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTLEEIYRW 179
Query: 659 PESGREALLSDHCGQTNTSNVRIVPPSPGPFKKVQLGTGMKLLKI 703
+ + ++ N PF QL G L K
Sbjct: 180 EQREKNVVV----------NFETCRIDQSPF---QLVEGTSLQKT 211
Score = 80.5 bits (197), Expect = 4e-17
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 409 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQ 468
P+L SS+ YN+ V D MVRDV I + TY DL ++L++ + L+ FP V++ L
Sbjct: 1 PELSWSSANKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTK-LKFFPFVDTPDTNTLL 59
Query: 469 PSL 471
S+
Sbjct: 60 GSI 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 102/640 (15%), Positives = 192/640 (30%), Gaps = 210/640 (32%)
Query: 141 FYNEETMRAFF------PT-NFTMDF-PFDPQELTVFALIGVVCGFGGAGYVWSHRQYVL 192
F+ ++ F PT F D P P EL ++ YV
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-------------GKFL----GYVS 69
Query: 193 FMRRNKKMNAFLQKNRFLYPGIVVLLATSVSFPLGLGKYMAGDLNTHDQLSSLFSNFTWT 252
+ K+ F Q VL F Y+ G+ + H + L T
Sbjct: 70 SLVEPSKVGQFDQ----------VLNLCLTEF---ENCYLEGN-DIHALAAKLLQENDTT 115
Query: 253 KGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSGSFIPVF------ 306
V+ +E++K YI + I + P S +F
Sbjct: 116 ----LVKTKELIK-------------------NYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 307 --KIGAAFGRMIG----EIIF--LRFPDGI--THGKFIAPIIPGGYATVGAAAFSGAVTH 356
++ A FG G + F LR + T+ + +I A S +
Sbjct: 153 NAQLVAIFG---GQGNTDDYFEELR---DLYQTYHVLVGDLI-----KFSAETLSELIRT 201
Query: 357 TISVSVIMFEMTGQITHIIPVM-----------IAVLISNAVA----ALLQPSLYDSIIL 401
T+ + T + ++ L+S ++ ++Q + Y ++
Sbjct: 202 TLDAEKV-------FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVT 252
Query: 402 IKKLPYLP-DLLPSSSGIYNVYVEDFMVRDVKYI-----WNNMTYRDLKNLLKE-----N 450
K L + P +L G + + + I W + + ++ +
Sbjct: 253 AKLLGFTPGELRSYLKGA-TGHSQGLVT--AVAIAETDSWESF-FVSVRKAITVLFFIGV 308
Query: 451 RSLRVFPLVESSVAALLQPSLYD---------SII------LIKKLPYLPDLLPSSSGIY 495
R +P ++L+ SL + SI + + LP+ +
Sbjct: 309 RCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 496 ----NVYVEDFMVRDVKYIWNNMT--YRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRR 549
N ++ +V + + L L N +LR ++ +Q I
Sbjct: 368 ISLVNGA-KNLVV----------SGPPQSLYGL---NLTLR---KAKAPSGLDQSRIPF- 409
Query: 550 EERQRRP---SRF-EVTPAP---DLLRGNPHGVSASSDNIPRTENLDGPQF-CPVFGCQP 601
+R+ +RF V +P LL ++ D + + + PV+
Sbjct: 410 --SERKLKFSNRFLPVA-SPFHSHLLVPASDLINK--DLVKNNVSFNAKDIQIPVYD--- 461
Query: 602 KKSILKKTNSFS-LKNFSPMLTPNVTPYTTVTGAESRIRMAFEAIFHKSAT-LQDANPDP 659
T S L+ S ++ + R+ + +E AT + D P
Sbjct: 462 -------TFDGSDLRVLSGSISERIVDCII------RLPVKWETTTQFKATHILDFGPGG 508
Query: 660 ESGREALLSDHCGQTNTSNVRIVPPS---PGP-----FKK 691
SG L + + VR++ P FK+
Sbjct: 509 ASGLGVLTHR---NKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 45.8 bits (108), Expect = 5e-05
Identities = 77/462 (16%), Positives = 140/462 (30%), Gaps = 162/462 (35%)
Query: 352 GAVTHTISVSVIMFEMTGQI----THIIPVMIAVLISNAVAALLQPSLYDSII-LIKK-L 405
G++ H + V F + Q+ I+P + AA +P+ + L+ K L
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPE-----PTEGFAADDEPT---TPAELVGKFL 65
Query: 406 PYLPDLL-PSSSGIY----NVYVEDFMVRDVKYIWNNMTYRDL----KNLLKENRSLRVF 456
Y+ L+ PS G + N+ + +F + Y+ N D+ LL+EN +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEF---ENCYLEGN----DIHALAAKLLQENDT---- 114
Query: 457 PLVESSVAALLQPSLYDSIILIKK---LPYLPDLLPSSS-------------GIYNVYVE 500
L++ + + I+ K+ L + G + Y E
Sbjct: 115 --TLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 501 DFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQ-----MEIKR-REERQR 554
+ RD ++ TY L L + + + L+ ++ E+ + I E
Sbjct: 172 EL--RD---LYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 555 RPSR--------------------FEVTP-----APDLLRGNPHGVS------------A 577
P + + VT P LR G + A
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 578 SSDNIPRTENLDGPQFCP--------VF--G--CQ---PKKSILKKTNSFSLKNF----S 618
+D F +F G C P S+ SL+N S
Sbjct: 285 ETD--------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 619 PMLTPNVTPYTTVTGA-----ESRIRMAFEAIFHKSATLQDA--N-PD-------PES-- 661
PML +++ + + + ++ + N P+S
Sbjct: 337 PML--------SISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 662 GREALLSDHCGQTNTSNVRIVPPSPGPFKKVQLGTGMKLLKI 703
G L + RI PF + +L + L +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRI------PFSERKLKFSNRFLPV 423
Score = 43.9 bits (103), Expect = 2e-04
Identities = 97/592 (16%), Positives = 172/592 (29%), Gaps = 241/592 (40%)
Query: 7 THDQLSSLFSNFTW---TKGHFTVEE-QEVLKHWTTRNTDVFVS----------LACFML 52
+H L T F + QE T+ F + + F+
Sbjct: 12 SHGSLE-----HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 53 YTVCCSALKSPQCISPSEITGEDSLTK--IEKFPEGRAPLVVYEFLKG----ALYKGVLF 106
Y + PS++ D + + +F +L+G AL +L
Sbjct: 67 YVS--------SLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGNDIHALAAKLLQ 110
Query: 107 SIEVT--TVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQ 164
+ T I+NY TA R++A +++++ A F
Sbjct: 111 ENDTTLVKTKELIKNY----ITA-------RIMAKRPFDKKSNSALFRAV-------GEG 152
Query: 165 ELTVFALIGVVCGFGGAG----YVWS-----HRQYVLFMRR-NKKMNAFLQ-------KN 207
+ A+ FGG G Y + ++ Y + + K L
Sbjct: 153 NAQLVAI------FGGQGNTDDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 208 RFLYP-GIVVL--------------LATS-VSFPL-GLGKYMAGDLNTHDQLSSLFSNFT 250
++ G+ +L L + +S PL G+ QL+ +
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI-----------QLAH-YVVTA 253
Query: 251 WTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTYIFSIIASTIPVPSG-SFIP----- 304
G E + LK T + + ++A IA T S SF
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVA-----------IAET---DSWESFFVSVRKA 299
Query: 305 ---VFKIGA----AFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYATVGAAAFSGAVTHT 357
+F IG A+ L D + + + G +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILE--DSLENNE-------------------GVPSPM 338
Query: 358 ISVSVIMFEMTGQI-THI------IPVMIAVLIS--NA-----VAALLQP-SLYDSIILI 402
+S+S + E Q+ ++ +P V IS N V+ P SLY + +
Sbjct: 339 LSISNLTQE---QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--PQSLYGLNLTL 393
Query: 403 KKL-----------P-----------YLP-------DLL-PSSSGIYNVYVEDFMVRDVK 432
+K P +LP LL P+S I +D + +V
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI----NKDLVKNNVS 449
Query: 433 Y--------IWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSII 476
+ +++ DL+ L + + + D II
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVL-----------------SGSISERIVDCII 484
Score = 35.0 bits (80), Expect = 0.11
Identities = 39/282 (13%), Positives = 78/282 (27%), Gaps = 104/282 (36%)
Query: 427 MVRD-------VKYIWNNM------TYR-DLKNLLKEN-RSLRV-FPLVES-SVAALLQP 469
M D + +WN TY + +++ N +L + F + +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 470 SLYDSII--LIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWN------NMT------ 515
++++I+ +K ++ S+ Y + + T
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHST---------------SYTFRSEKGLLSATQFTQPA 1735
Query: 516 --------YRDLKN--LLKENR-----SL----------RVFP------LVESSGKFEQM 544
+ DLK+ L+ + SL V +V G Q+
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 545 EIKRREERQR-------RPSRFEVTPAPDLLRGNPHGVSASS--------DNIP------ 583
+ R E + P R + + + L+ V + N+
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 584 --RTENLDGPQFCPVFGCQPKKSI--LKKTNSFSLKNFSPML 621
LD V + I ++ S SL+ L
Sbjct: 1856 AGDLRALD--TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 53.1 bits (127), Expect = 2e-08
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 409 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 462
P +L + G ++V VE FM + + + ++ ++ + +PLVES+
Sbjct: 1 PRILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTD-VTEYPLVEST 53
Score = 53.1 bits (127), Expect = 2e-08
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 485 PDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
P +L + G ++V VE FM + + + ++ ++ + +PLVES+
Sbjct: 1 PRILGRNIGSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTD-VTEYPLVEST 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 6e-07
Identities = 86/636 (13%), Positives = 175/636 (27%), Gaps = 230/636 (36%)
Query: 12 SSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFMLYTVCCSAL-KSPQCISPSE 70
L N+ + E+++ + T +++ L Q +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ-----PSMMTRMYIE---------QRDRLYNDNQVFAKYN 130
Query: 71 ITGEDSLTKIEKF-----PEGRAPLVVYEFL---KGALYKGVLFSIEVTTVY-FAIRNYW 121
++ K+ + P +++ L K + V S +V F I +W
Sbjct: 131 VSRLQPYLKLRQALLELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FW 186
Query: 122 RGFFTAVCGATVFRLLAVWFYN---EETMRAFFPTNFTMDFPFDPQELTVFALIGVVCGF 178
TV +L Y T R+ +N + EL
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------- 237
Query: 179 GGAGYVWSHRQYV---LFMR--RNKK-MNAFLQKNRFLYPGIVVLLAT---SVSFPLGLG 229
+ Y L + +N K NAF + +LL T V+ L
Sbjct: 238 ------LKSKPYENCLLVLLNVQNAKAWNAFNLSCK-------ILLTTRFKQVTDFLSAA 284
Query: 230 KYMAGDLN------THDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFML 283
L+ T D++ SL + + ++ L
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQD---LPR-----------EVL--- 323
Query: 284 YTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGYA 343
+T P ++ +I E +R DG+ +
Sbjct: 324 ---------TTNP---------RRLS-----IIAE--SIR--DGLATWDN--------WK 348
Query: 344 TVGAAAFSGAVTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQPSLYDSIILIK 403
V +T I S+ +L+P+ Y +
Sbjct: 349 HVNCD----KLTTIIESSL--------------------------NVLEPAEYRK--MFD 376
Query: 404 KLPYLPDLLPSSSGIYNVYV-EDFMVRDVKYIWNNMTYRDLKNLLKE--NRSL------- 453
+L P + ++ + IW ++ D+ ++ + SL
Sbjct: 377 RLSVFPP---------SAHIPTILLSL----IWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 454 RVFPL----VESSVAALLQPSLYDSII----LIKKLPYLPDLLPSSSGIY---------- 495
+ +E V + +L+ SI+ + K DL+P Y
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLK 482
Query: 496 ------------NVYVE-DFM---VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSG 539
V+++ F+ +R WN + N L++ + + + + ++
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG--SILNTLQQLKFYKPY-ICDNDP 539
Query: 540 KFEQM--EIKRREERQRRPSRFEVTPAPDLLRGNPH 573
K+E++ I F +L+ +
Sbjct: 540 KYERLVNAIL----------DFLPKIEENLICS-KY 564
Score = 49.9 bits (118), Expect = 3e-06
Identities = 66/450 (14%), Positives = 130/450 (28%), Gaps = 150/450 (33%)
Query: 133 VFRLLAVWF---YNEETMRAFFPTNFTMDFPF----------DPQELTVFALIGVVCGFG 179
RL W EE ++ F +++ F P +T
Sbjct: 64 TLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---------- 111
Query: 180 GAGYV------WSHRQYV--LFMRRNKKMNAFLQKNRFLY-----PGIVV--LLATSVSF 224
Y+ ++ Q + R + L++ L +++ +L
Sbjct: 112 ---YIEQRDRLYNDNQVFAKYNVSRLQPYLK-LRQA--LLELRPAKNVLIDGVL------ 159
Query: 225 PLGLGK-YMAGD-LNTHDQLSSLFSNFTW-TKGHFTVEEQEVLKHWTTRNTDVFVSLACF 281
G GK ++A D ++ + W + + VL+
Sbjct: 160 --GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLE---------------- 200
Query: 282 MLYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFP------DGITHGKFIA 335
ML ++ I + S +I + + + + + + K
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 336 PIIPGGYATVGAAAFSGA----VTHTISVSVIMFEMTGQITHIIPVMIAVLISNAVAALL 391
AF+ + +T T V F THI + + L
Sbjct: 261 -------------AFNLSCKILLT-TRFKQVTDFLSAATTTHIS-------LDHHSMTLT 299
Query: 392 QPSLYDSIILIKKLPYLPDLLPSS---------SGIYNVYVEDFMVRDVKYIWNNMTYRD 442
+ +L+K L P LP S I E +RD W+N + +
Sbjct: 300 PDEVKS--LLLKYLDCRPQDLPREVLTTNPRRLSII----AE--SIRDGLATWDNWKHVN 351
Query: 443 LKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYV-ED 501
L ++ESS+ L+P+ Y + +L P + ++
Sbjct: 352 CDKLTT---------IIESSLNV-LEPAEYRK--MFDRLSVFPP---------SAHIPTI 390
Query: 502 FMVRDVKYIWNNMTYRDLKNLLKE--NRSL 529
+ IW ++ D+ ++ + SL
Sbjct: 391 LLSL----IWFDVIKSDVMVVVNKLHKYSL 416
Score = 47.5 bits (112), Expect = 2e-05
Identities = 48/386 (12%), Positives = 108/386 (27%), Gaps = 130/386 (33%)
Query: 365 FEMTGQITH----IIPVMIAVLISN----AVAALLQPSL----YDSIIL----IKKLPYL 408
FE G+ + I+ V + N V + + L D II+ + L
Sbjct: 9 FET-GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 409 PDLLPSS-SGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALL 467
L S + +VE+ + + K++ + + E R
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--------EQR---------------- 103
Query: 468 QPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR 527
QPS+ + +Y+E RD
Sbjct: 104 QPSM----------------------MTRMYIE---------------QRD--------- 117
Query: 528 SLRVFPLVESSGKFEQMEIKRREE-RQRRPSRFEVTPAPDLLRGNPHG---------VSA 577
L + F + + R + + R + E+ PA ++L G
Sbjct: 118 -----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALD 169
Query: 578 SSDNIPRTENLDGPQFCPVFG-CQPKKSILKKTNSFSL---KNFSPMLTPNVTPYTTVTG 633
+ +D F C +++L+ N++ + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 634 AESRIRMAFEAIFHKSA--TLQDANPDPE-------------SGREALLSDHCGQTNTSN 678
++ +R ++ +++ L + + + + R ++D T++
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 679 VRIVPPSPGPFKKVQLGTGMKLLKIW 704
+ + S + LL +
Sbjct: 289 ISLDHHSMT-LTPDE---VKSLLLKY 310
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 49.0 bits (117), Expect = 2e-06
Identities = 20/161 (12%), Positives = 49/161 (30%), Gaps = 11/161 (6%)
Query: 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIK 479
+ +E M+++ + + E + + + LL + D L+
Sbjct: 19 GMNIETLMIKNPPILSKEDRLGSAFKKINEGG-IGRIIVANEKIEGLL--TTRD---LLS 72
Query: 480 KLPYLPDLLPSSSGIY---NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
+ S +Y + D+M + ++N N++ P+V+
Sbjct: 73 TVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN-FGSLPVVD 131
Query: 537 SSGKFEQMEIKRREERQRRPSRFEVTPAPDLLRGNPHGVSA 577
+ K + + RE E+ P + +
Sbjct: 132 INDKPVGI-VTEREFLLLYKDLDEIFPVKVFMSTKVQTIYK 171
Score = 46.7 bits (111), Expect = 1e-05
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 17/143 (11%)
Query: 401 LIKKLPYLPDLLPSSSGIY---NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFP 457
L+ + S +Y + D+M + ++N N++ P
Sbjct: 70 LLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN-FGSLP 128
Query: 458 LVESSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYR 517
+V+ + + + + + L ++ P V+ FM V+ I+ +
Sbjct: 129 VVDINDKPVGIVTERE---FLLLYKDLDEIFP---------VKVFMSTKVQTIYKEVRLD 176
Query: 518 DLKNLLKENRSLRVFPLVESSGK 540
L+ R P+++ K
Sbjct: 177 QAVKLMLRRG-FRRLPVIDDDNK 198
Score = 39.0 bits (91), Expect = 0.004
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 10/120 (8%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILIKK 480
V+ FM V+ I+ + L+ R P+++ V ++ ++ + K
Sbjct: 158 VKVFMSTKVQTIYKEVRLDQAVKLMLRRG-FRRLPVIDDDNKVVGIV--TVVN----AIK 210
Query: 481 LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540
Y V+D MV ++ I + + R + ++
Sbjct: 211 QLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKR-IGSLLILNKDNT 269
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 43.9 bits (104), Expect = 3e-05
Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 16/123 (13%)
Query: 423 VEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILI 478
E F+ +++ + + LL + P+V + L D +
Sbjct: 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMT-YTRVPVVTDEKQFVGTI--GLRDIMAYQ 73
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
+ +++ + + DV + + T ++ + L + P+V++
Sbjct: 74 MEHDLSQEIMA------DTDIVHMTKTDVAVVSPDFTITEVLHKLVDE---SFLPVVDAE 124
Query: 539 GKF 541
G F
Sbjct: 125 GIF 127
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 45.1 bits (107), Expect = 3e-05
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES-SVAALLQPSLYDSIILIKKL 481
++D++ RDV +D+ + N R P+V + ++ + D I L+
Sbjct: 150 IDDYITRDVIVATPGERLKDVARTMVRNG-FRRLPVVSEGRLVGII--TSTDFIKLLGSD 206
Query: 482 PYLPDLLPSSSG-IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540
+ + I NV +E+ M RDV + + ++ N + P+V+ + +
Sbjct: 207 WAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTND-IGALPVVDENLR 265
Score = 42.1 bits (99), Expect = 4e-04
Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
Query: 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES---------SVAALLQ 468
++ ++ + + ++ T R + EN+ R+ P+V + + ++
Sbjct: 1 MFVRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRL-PVVNAGNNKVVGIITSMDIVD 59
Query: 469 PSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRS 528
S + + + + L + N V + M +V + N +
Sbjct: 60 FMGGGSKYNLIREKHERNFLAAI----NEPVREIMEENVITLKENADIDEAIETFLTKN- 114
Query: 529 LRVFPLVESSGK 540
+ P+V +
Sbjct: 115 VGGAPIVNDENQ 126
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/123 (13%), Positives = 46/123 (37%), Gaps = 15/123 (12%)
Query: 423 VEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILI 478
V+ F++ V ++ +L + P++++S + L+ S+ ++
Sbjct: 13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTG-YSAIPVLDTSYKLHGLI--SMTM---MM 66
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
+ L + + + VE+ M R++ + + + L+ + + +
Sbjct: 67 DAILGLERI--EFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPFV---CVENDD 121
Query: 539 GKF 541
G F
Sbjct: 122 GYF 124
Score = 28.9 bits (65), Expect = 3.7
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRV 455
+ + VE+ M R++ + + + L+ + + V
Sbjct: 80 LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPFVCV 117
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/120 (9%), Positives = 39/120 (32%), Gaps = 18/120 (15%)
Query: 422 YVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKL 481
V+ ++ +D + + T R+ + +++ + + + + ++ + L
Sbjct: 14 KVKKWVTQDFPMVEESATVRECLHRMRQYQ-TNECIVKDRE-------GHFRGVVNKEDL 65
Query: 482 PYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
L + V + + ++ L E++ P+V+ +
Sbjct: 66 LDLDL---------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQ-EPYLPVVDEEMRL 115
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 40.9 bits (96), Expect = 3e-04
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 15/123 (12%)
Query: 423 VEDFMV--RDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILI 478
V FM+ V ++ +L + P+++ S + L+ ++
Sbjct: 16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTG-YTAIPVLDPSYRLHGLI--GTNM---IM 69
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
+ L + + + VE+ M+ D+ + N ++ N + +
Sbjct: 70 NSIFGLERI--EFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFV---CVENDE 124
Query: 539 GKF 541
F
Sbjct: 125 QVF 127
Score = 29.0 bits (65), Expect = 2.9
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRV 455
+ + VE+ M+ D+ + N ++ N + V
Sbjct: 83 LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCV 120
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 38.9 bits (91), Expect = 0.001
Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 15/126 (11%)
Query: 420 NVYVEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV--ESSVAALLQPSLYDSI 475
++V+D M V ++ +L ++ P++ + L+ S
Sbjct: 14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSG-YSAIPVLDPMYKLHGLI--STAM-- 68
Query: 476 ILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLV 535
++ + L + + + VE M +D+ + ++ + ++ V
Sbjct: 69 -ILDGILGLERI--EFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDH---PFICAV 122
Query: 536 ESSGKF 541
G F
Sbjct: 123 NEDGYF 128
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 37.3 bits (87), Expect = 0.005
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILIKK 480
VED M R + T D K+L++ +R P+V+++ + ++ S D +L +
Sbjct: 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALD-IRHVPIVDANKKLLGIV--SQRD--LLAAQ 61
Query: 481 LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
L S + + + M DV + ++ +++++ + P+V
Sbjct: 62 ESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHK-IGCLPVVA 116
Score = 33.8 bits (78), Expect = 0.069
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 499 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540
VED M R + T D K+L++ +R P+V+++ K
Sbjct: 7 VEDMMTRHPHTLLRTHTLNDAKHLMEALD-IRHVPIVDANKK 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.012
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 602 KKSILKKTNSFSLKNFSPMLTP----NVT 626
K+++ KK + SLK ++ P T
Sbjct: 19 KQAL-KKLQA-SLKLYADDSAPALAIKAT 45
Score = 35.3 bits (80), Expect = 0.027
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 402 IKKL-----PYLPDLLPSSSGIYNVYVE 424
+KKL Y D P+ + I +E
Sbjct: 22 LKKLQASLKLYADDSAPALA-I-KATME 47
Score = 35.3 bits (80), Expect = 0.027
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 478 IKKL-----PYLPDLLPSSSGIYNVYVE 500
+KKL Y D P+ + I +E
Sbjct: 22 LKKLQASLKLYADDSAPALA-I-KATME 47
Score = 30.3 bits (67), Expect = 1.1
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 15/40 (37%)
Query: 542 EQMEIKRREERQRRPSRFEV-TP--APDLLRGNPHGVSAS 578
E+ +K+ + + ++ AP L + A+
Sbjct: 18 EKQALKKLQ------ASLKLYADDSAPAL------AIKAT 45
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 35.3 bits (82), Expect = 0.019
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 27/133 (20%)
Query: 418 IYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS------VAALLQPSL 471
+ N+ V+D M ++V + + + + + + P+++ V +
Sbjct: 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYK-ISSLPVIDDENKVIGIV------TT 57
Query: 472 YDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLL----KENR 527
D + L + D M +DV I + + + + K+
Sbjct: 58 TD---IGYN-------LIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEE 107
Query: 528 SLRVFPLVESSGK 540
+ P+V+ + K
Sbjct: 108 IINQLPVVDKNNK 120
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 35.9 bits (83), Expect = 0.030
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 18/118 (15%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
V+ M ++ I T L K+ + +R FP+V II +K
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYK-VRSFPVVNKE-------GKLVGIISVK--- 51
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540
+L + + + RDV + N T + L+ E R +V+S GK
Sbjct: 52 ---RILVNPD---EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYD-YRRVVVVDSKGK 102
Score = 32.8 bits (75), Expect = 0.27
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS--VAALLQPSLYDSIILIKK 480
+ + RDV + N T + L+ E R +V+S +L ++ D +I++
Sbjct: 62 LAMLVKRDVPVVKENDTLKKAAKLMLEYD-YRRVVVVDSKGKPVGIL--TVGD---IIRR 115
Query: 481 LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGK 540
+ +E + R V +W + L + P+V+S G
Sbjct: 116 YFAKSEKYKGVE------IEPYYQRYVSIVWEGTPLKAALKALLLSN-SMALPVVDSEGN 168
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 35.1 bits (81), Expect = 0.036
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 21/137 (15%)
Query: 423 VEDFM--VRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE-----------------SSV 463
V DFM +++ + + + D LL E + + P+++ S+
Sbjct: 6 VGDFMTPRQNLHVVKPSTSVDDALELLVEKK-VTGLPVIDDNWTLVGVVSDYDLLALDSI 64
Query: 464 AALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLL 523
+ Q + +L S Y V D M + ++ D LL
Sbjct: 65 SGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLL 124
Query: 524 KENRSLRVFPLVESSGK 540
E + R P+V++ GK
Sbjct: 125 LETK-FRRLPVVDADGK 140
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 34.0 bits (79), Expect = 0.038
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 40/130 (30%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
V+D + + +N++ + +L ++ + P+V+ KL
Sbjct: 3 VKDILSKPPITAHSNISIMEAAKILIKHN-INHLPIVDEH----------------GKL- 44
Query: 483 YLPDLLPSSSGI------------YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLR 530
GI +E+ M R+V + + + + +
Sbjct: 45 ---------VGIITSWDIAKALAQNKKTIEEIMTRNVITAHEDEPVDHVAIKMSKYN-IS 94
Query: 531 VFPLVESSGK 540
P+V+ +
Sbjct: 95 GVPVVDDYRR 104
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 34.1 bits (79), Expect = 0.038
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 28/128 (21%)
Query: 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSII--- 476
V+++M V + + D+ ++ E + +V+ + +
Sbjct: 3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKN-IGSVIVVDG-----------NKPVGII 50
Query: 477 ----LIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVF 532
++K + L E+FM + I + L+++ +R
Sbjct: 51 TERDIVKAIGKGKSL--------ETKAEEFMTASLITIREDSPITGALALMRQFN-IRHL 101
Query: 533 PLVESSGK 540
P+V+ G
Sbjct: 102 PVVDDKGN 109
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 34.6 bits (80), Expect = 0.047
Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 14/126 (11%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVES--------SVAALLQPSLYDS 474
V + + + ++ + + E+ + V V LL+ S +
Sbjct: 18 VCKLISLKPTVVEEDTPIEEIVDRILEDP-VTRTVYVARDNKLVGMIPVMHLLKVSGFHF 76
Query: 475 IILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPL 534
I K + + + + M+ V Y+ + + L+ +N ++ P+
Sbjct: 77 FGFIPKEELIRSSM---KRLIAKNASEIMLDPV-YVHMDTPLEEALKLMIDNN-IQEMPV 131
Query: 535 VESSGK 540
V+ G+
Sbjct: 132 VDEKGE 137
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 34.3 bits (79), Expect = 0.060
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSII----LI 478
VE M + K + N T D ++ EN L + + + + ++ +I
Sbjct: 11 VEKIMNSNFKTVNWNTTVFDAVKIMNENH-LYGLVVKDDNGNDV-------GLLSERSII 62
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
K+ +P + V + M + + + ++ +D+ L EN L +V+
Sbjct: 63 KR------FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG-LERCAVVDDP 115
Query: 539 GK 540
G+
Sbjct: 116 GR 117
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 31.7 bits (73), Expect = 0.24
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSII----LI 478
VED MV DV I + D+ EN +V+ V I+ ++
Sbjct: 3 VEDVMVTDVDTIDITASLEDVLRNYVENA-KGSSVVVKEGVRV--------GIVTTWDVL 53
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
+ + DL V V + M RD+ I T ++ + +N + + E
Sbjct: 54 EAIAEGDDLA-------EVKVWEVMERDLVTISPRATIKEAAEKMVKNV-VWRLLVEE 103
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 31.8 bits (71), Expect = 0.64
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 11/126 (8%)
Query: 417 GIYNVY--VEDFMVRDVKYIWNNMTYRDLKNLLKEN--RSL-------RVFPLVESSVAA 465
G + V VED + + + ++ + N++++ +S+ + ++ +S
Sbjct: 1 GSHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNIT 60
Query: 466 LLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKE 525
++DS IL K L ++L + S E+ V K + M LK + E
Sbjct: 61 ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120
Query: 526 NRSLRV 531
Sbjct: 121 GDIAIA 126
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 28.5 bits (64), Expect = 3.0
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 16/123 (13%)
Query: 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS-VAALLQPSLYDSIILI 478
+V D + D L + P+++ ++ L L+
Sbjct: 4 SVTFSYLAETDYPVFTLGGSTADAARRLAASG-CACAPVLDGERYLGMV--HLSR---LL 57
Query: 479 KKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESS 538
+ P + + + ++ V+ D + + V PL +
Sbjct: 58 EGRKGWPTV--------KEKLGEELLETVRSYRPGEQLFDNLISVAAAK-CSVVPLADED 108
Query: 539 GKF 541
G++
Sbjct: 109 GRY 111
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 29.3 bits (66), Expect = 4.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 337 IIPGGYATVGAAAFSGA-VTH---TISVSVIM 364
+IPG A A+ G+ + H IS+S ++
Sbjct: 127 VIPGVTAANAVASLLGSPLAHDTCLISLSDLL 158
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 28.8 bits (65), Expect = 7.8
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 108 IEVTTVYFAIRNYWRGFFTAVCGAT-VFRLLAVWFYNEETMRAFFPTNFTMDFPFDPQEL 166
+ I G A + FR++ + F+ +E + A T P L
Sbjct: 403 LAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKGVTHSLP-----L 457
Query: 167 TVFALIGVVCGFGGAGYV 184
V ++ G +
Sbjct: 458 IVLLILSTFVGALIVPPL 475
>2h4u_A Thioesterase superfamily member 2; structural genomics, structural
genomics consortium, SGC, hydrolase; 2.20A {Homo
sapiens} SCOP: d.38.1.5
Length = 145
Score = 27.4 bits (61), Expect = 9.0
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 325 PDGITHGKFIAPII--PGGYATVGAAAFSGAVTHTISVSVI 363
G HG A ++ A + + V+ ++++ +
Sbjct: 56 AIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYM 96
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino
acid biosynthesis, lyase; 1.7A {Actinobacillus
pleuropneumoniae} SCOP: c.23.13.1
Length = 154
Score = 27.5 bits (62), Expect = 9.1
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 172 IGVVCGFGGAGYVWSHRQYVLFMRRNKK 199
GV+CG G GY ++ + +++ +
Sbjct: 121 KGVICGLGAKGYDYALDFAISELQKIQL 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,005,588
Number of extensions: 682205
Number of successful extensions: 1473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 73
Length of query: 704
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 604
Effective length of database: 3,909,693
Effective search space: 2361454572
Effective search space used: 2361454572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.5 bits)