RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6631
(704 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 115 bits (288), Expect = 6e-28
Identities = 51/300 (17%), Positives = 93/300 (31%), Gaps = 48/300 (16%)
Query: 103 GVLFSIEVTTVYFAIRNYWRGFFTAVCGATVFRLLAVWFYNEETMRAFFPTNFTMDFPFD 162
G+LF IE F R G + ++ F +E A D P +
Sbjct: 180 GILFIIEEMRPQF--RYTLISIKAVFIGVIMSTIMYRIFNHE---VALIDVGKLSDAPLN 234
Query: 163 PQELTVFALIGVVCGFGGAGYVWSHRQYVLFMRRNKKMNAFLQKNRFLYPGIVVLLATSV 222
L ++ ++G++ G G + +++ L G + L +
Sbjct: 235 --TLWLYLILGIIFGIFGPIFNKWVLG---MQDLLHRVHGGNITKWVLMGGAIGGLCGLL 289
Query: 223 SFPLGLGKYMAGDLNTHDQLSSLFSNFTWTKGHFTVEEQEVLKHWTTRNTDVFVSLACFM 282
F + T G + T L
Sbjct: 290 GF---------------------VAPATSGGGFNLI-------PIATAGNFSMGMLVFIF 321
Query: 283 LYTYIFSIIASTIPVPSGSFIPVFKIGAAFGRMIGEIIFLRFPDGITHGKFIAPIIPGGY 342
+ I +++ + P G F P+ +G G G + FP + G +
Sbjct: 322 VARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY--------HLEAGTF 373
Query: 343 ATVGAAAFSGAVTH-TISVSVIMFEMTGQITHIIPVMIAVLISNAVAALLQP-SLYDSII 400
A G A A ++ +++ EMT I+P++I L + +A LY +I+
Sbjct: 374 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAIL 433
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 38.9 bits (89), Expect = 6e-04
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 419 YNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENR-SLRVFPLVESSVAALLQPSLYDSIIL 477
YN+ V D MVRDV I + TY DL ++L++ + F + L + L
Sbjct: 9 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGL 68
Query: 478 IKK---------------LPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNL 522
+++ L + + + + + + + + L
Sbjct: 69 LQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTL 128
Query: 523 LKENRSLRVFPLVE 536
L +
Sbjct: 129 FSLLG-LDRAYVTS 141
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 35.0 bits (79), Expect = 0.008
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
+E M+++ + + E R+ E L L ++ K
Sbjct: 3 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDS 62
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
L I + D+M + ++N N++ P+V+ + K
Sbjct: 63 CSQGDLYH---ISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN-FGSLPVVDINDKP 117
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 35.4 bits (80), Expect = 0.009
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 420 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE------------------- 460
V +E + R V +W + L + P+V+
Sbjct: 3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSN-SMALPVVDSEGNLVGIVDETDLLRDSE 61
Query: 461 -SSVAALLQPSLYDSIILIKKLPYLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDL 519
+ + + I + + N V + M RDV +MT ++
Sbjct: 62 IVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEV 121
Query: 520 KNLLKENRSLRVFPLVESSGKF 541
+ + + P++ G
Sbjct: 122 ALKMAKYS-IEQLPVIRGEGDL 142
Score = 33.4 bits (75), Expect = 0.035
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 496 NVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKFEQMEIKRREERQRR 555
V +E + R V +W + L + P+V+S G + + R
Sbjct: 3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSN-SMALPVVDSEGNLVGIVDETDLLRDSE 61
Query: 556 PSRF 559
R
Sbjct: 62 IVRI 65
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 34.9 bits (79), Expect = 0.009
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 4/114 (3%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
VED M R + T D K+L++ + + L + +L +
Sbjct: 4 VEDMMTRHPHTLLRTHTLNDAKHLMEAL---DIRHVPIVDANKKLLGIVSQRDLLAAQES 60
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
L S + + + M DV + ++ +++++ + P+V
Sbjct: 61 SLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHK-IGCLPVVA 113
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 31.0 bits (69), Expect = 0.19
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
VED MV DV I + D+ EN +V+ + I
Sbjct: 2 VEDVMVTDVDTIDITASLEDVLRNYVENA-KGSSVVVK-----------EGVRVGIVTTW 49
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
+ + + + V V + M RD+ I T ++ + +N + + E
Sbjct: 50 DVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNV-VWRLLVEE 102
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 30.6 bits (68), Expect = 0.21
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 14/119 (11%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
V+++M V + + D+ ++ E V + + + D + I K
Sbjct: 6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG--IITERDIVKAIGKGK 63
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
E+FM + I + L+++ +R P+V+ G
Sbjct: 64 S-----------LETKAEEFMTASLITIREDSPITGALALMRQFN-IRHLPVVDDKGNL 110
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 30.8 bits (68), Expect = 0.29
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
V+ FM V+ I+ + L+ R+ + + + + + L K +
Sbjct: 4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVD 63
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPL 534
L Y V+D MV ++ I + + R + L
Sbjct: 64 KLDP-----DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL 110
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 29.5 bits (65), Expect = 0.55
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 18/119 (15%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
V+ M ++ I T L K+ + + KL
Sbjct: 3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPV-----------------VNKEGKLV 45
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
+ + + + RDV + N T + L+ E R +V+S GK
Sbjct: 46 GIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYD-YRRVVVVDSKGKP 103
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 28.6 bits (63), Expect = 1.4
Identities = 12/114 (10%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
++ +M + + + + + ++ L+ E + + + +++
Sbjct: 7 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-----------DGNVVGFFTKS 55
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
+ + Y++ VE M R++ N ++ + E+R ++ + E
Sbjct: 56 DIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHR-IKHILIEE 108
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 28.3 bits (62), Expect = 1.6
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
VE M + K + N T D ++ EN + ++ L + I+ + +P
Sbjct: 5 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGN---DVGLLSERSIIKRFIP 61
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
V + M + + + ++ +D+ L EN L +V+ G+
Sbjct: 62 RNKK-------PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENG-LERCAVVDDPGRV 112
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 25.9 bits (56), Expect = 9.0
Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 427 MVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLPYLPD 486
+ D + RD+ + + + + L + I D
Sbjct: 2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDI---------D 52
Query: 487 LLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSGKF 541
L + D+ +T ++ +L+ ++ P+V + +
Sbjct: 53 FLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSK-KGKLPIVNENDEL 106
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 26.0 bits (56), Expect = 9.7
Identities = 13/114 (11%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 423 VEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVESSVAALLQPSLYDSIILIKKLP 482
D M V + + T ++E+ + P+ +
Sbjct: 3 ARDIMNAGVTCVGEHETLTAAAQYMREHD-IGALPICGDDDRLHGM---------LTDRD 52
Query: 483 YLPDLLPSSSGIYNVYVEDFMVRDVKYIWNNMTYRDLKNLLKENRSLRVFPLVE 536
+ L + + + Y+ N + +++ N+++E++ +R P++
Sbjct: 53 IVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQ-VRRVPVIS 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,713,299
Number of extensions: 133388
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 23
Length of query: 704
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 612
Effective length of database: 1,144,436
Effective search space: 700394832
Effective search space used: 700394832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.1 bits)